BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028172
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3IZI5|RLMH_RHOS4 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=rlmH PE=3 SV=1
Length = 155
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 76 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSR---------RNTVSTEIDKSLADQRE- 125
G+ P LLE R G++ + L + + R S E LA R+
Sbjct: 35 GLPPVQLLEFEDRKGGGMEAEADLIAKAVAPGAALVVLDERGRTLSSPEFADHLAHWRDS 94
Query: 126 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 171
R +AL G +GL PR + L +F WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLAMSFGRMVWPHMLVRVMLAEQLY 141
>sp|A3PMR2|RLMH_RHOS1 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmH PE=3
SV=1
Length = 155
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 76 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSR---------RNTVSTEIDKSLADQRE- 125
G+ P LLE R G++ + L + + R S E LA R+
Sbjct: 35 GLPPVQLLELEDRKGGGMEAEADLIAKAVAPGAALVILDERGRTLSSPEFADHLAHWRDS 94
Query: 126 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 171
R +AL G +GL PR + L + WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLAMSLGRMVWPHMLVRVMLAEQLY 141
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 22/152 (14%)
Query: 11 PSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMK 70
PS +S + S F LD + K +C EG G + P + ++
Sbjct: 2 PSSSNSAAFSLDEFAKALDKHDYHAEKGQTVHGK--ICQHANEGVYVDFGGKSPGFVPVQ 59
Query: 71 ELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIG---FSRRNTVSTEIDKSLADQRERS 127
EL G+ P + +EDS DS D ++ D G SRR + ++LA+ E
Sbjct: 60 EL---GLRPHAEIEDSFPLDSAWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESG 116
Query: 128 MAL--------------NSEGLEGLVPRAKLL 145
L + EGL G +PR+ L+
Sbjct: 117 KTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLM 148
>sp|A4WNV2|RLMH_RHOS5 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmH PE=3
SV=1
Length = 155
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 76 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIG--------FSRRNTVST-EIDKSLADQRE- 125
G+ LLE R G++ + L + R T+S+ E + LA R+
Sbjct: 35 GLPAVQLLEVEDRKGGGMEAEADLLARAMAPGAVLAILDERGRTLSSPEFAEQLARWRDA 94
Query: 126 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 171
R +AL G +GL PR + L +F WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLALSFGRMVWPHMLVRVMLAEQLY 141
>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus
norvegicus GN=Nfkb1 PE=2 SV=1
Length = 522
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 16/52 (30%)
Query: 55 DKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGF 106
+K++ GE P SLFM K + P S +ED KEED+GF
Sbjct: 8 EKETQGEGP--SLFMASTKTEAIAPASTMED--------------KEEDVGF 43
>sp|Q05202|FCUA_YEREN Ferrichrome receptor FcuA OS=Yersinia enterocolitica GN=fcuA PE=1
SV=1
Length = 758
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 71 ELKRRGMTPTSLLE----DSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRER 126
E KR G TP + + +S+ LD + ++D R N + E + ++ DQ+ER
Sbjct: 214 EPKRAGDTPLTRVTVDYGSASQVGGALDVGRRYGDDDQFGVRVNVLHREGESAIHDQKER 273
Query: 127 SMALNSEGLEGLVPRAKLLLTLG 149
+ A+ S GL+ RA+ L +G
Sbjct: 274 TTAV-STGLDYRGDRARTSLDVG 295
>sp|A1WIG8|SYA_VEREI Alanine--tRNA ligase OS=Verminephrobacter eiseniae (strain EF01-2)
GN=alaS PE=3 SV=1
Length = 872
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 90 DSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGLVPRAKLLLTLG 149
D+ LD KL D+ F +T +D S RER +A++ G + R K
Sbjct: 378 DAALDGGAKLLPGDVAFKLHDTYGFPLDLSADMCRERGVAVDEAGFHLAMERQKTQARAA 437
Query: 150 GTF 152
G F
Sbjct: 438 GKF 440
>sp|P50845|KDGK_BACSU 2-dehydro-3-deoxygluconokinase OS=Bacillus subtilis (strain 168)
GN=kdgK PE=2 SV=1
Length = 324
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 16 SVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQE-----GDKQSNGEEPPESLFMK 70
S+++ +N G L F S+ L + V CG+ G G + + ++
Sbjct: 11 SMAMFYANEYGGLHEVSTF--SKGLAGAESNVACGLARLGFRMGWMSKVGNDQLGTFILQ 68
Query: 71 ELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEED--IGFSRRNTVSTEI 116
ELK+ G+ + ++ +GL K+K+KE D + + R+N+ ++ +
Sbjct: 69 ELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTL 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,247,133
Number of Sequences: 539616
Number of extensions: 3153538
Number of successful extensions: 7973
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7961
Number of HSP's gapped (non-prelim): 28
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)