Query 028172
Match_columns 212
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 07:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14472 F0F1 ATP synthase sub 76.7 2 4.2E-05 35.1 2.3 33 144-176 6-42 (175)
2 PF09188 DUF1951: Domain of un 54.6 7.2 0.00016 32.8 1.4 60 117-185 54-116 (137)
3 PF00430 ATP-synt_B: ATP synth 53.8 9.5 0.00021 28.6 1.9 21 156-176 3-23 (132)
4 PF06024 DUF912: Nucleopolyhed 52.8 12 0.00027 28.8 2.4 42 148-193 60-101 (101)
5 PRK13453 F0F1 ATP synthase sub 49.6 12 0.00025 30.8 1.9 25 152-176 18-42 (173)
6 PF09451 ATG27: Autophagy-rela 49.4 14 0.0003 32.5 2.4 22 162-183 208-229 (268)
7 TIGR00869 sec62 protein transl 47.7 14 0.0003 33.2 2.2 34 145-178 149-183 (232)
8 PRK07352 F0F1 ATP synthase sub 46.3 19 0.00041 29.4 2.6 20 157-176 24-43 (174)
9 PF04799 Fzo_mitofusin: fzo-li 44.6 7.3 0.00016 33.6 0.0 19 155-173 44-62 (171)
10 PRK09173 F0F1 ATP synthase sub 39.6 21 0.00046 28.5 1.9 18 155-172 4-21 (159)
11 PRK14473 F0F1 ATP synthase sub 36.1 25 0.00054 28.3 1.8 25 152-176 8-32 (164)
12 PRK13454 F0F1 ATP synthase sub 35.4 29 0.00062 28.9 2.1 23 154-176 33-55 (181)
13 COG3966 DltD Protein involved 34.9 25 0.00054 34.2 1.9 25 154-181 5-29 (415)
14 PRK13460 F0F1 ATP synthase sub 34.4 29 0.00062 28.4 1.9 22 155-176 19-40 (173)
15 PF12273 RCR: Chitin synthesis 34.2 23 0.0005 27.8 1.3 16 152-167 4-19 (130)
16 PRK13460 F0F1 ATP synthase sub 31.8 35 0.00076 27.8 2.1 27 149-175 7-34 (173)
17 PF06210 DUF1003: Protein of u 30.7 39 0.00084 26.8 2.1 35 155-193 2-36 (108)
18 PRK13455 F0F1 ATP synthase sub 28.0 52 0.0011 27.0 2.5 20 156-175 30-49 (184)
19 CHL00118 atpG ATP synthase CF0 27.0 44 0.00096 26.9 1.9 20 157-176 27-46 (156)
20 KOG4452 Predicted membrane pro 26.9 37 0.0008 26.3 1.3 25 144-171 54-78 (79)
21 PRK06569 F0F1 ATP synthase sub 26.6 54 0.0012 27.7 2.4 19 156-174 9-27 (155)
22 PF06692 MNSV_P7B: Melon necro 25.7 75 0.0016 23.7 2.7 28 159-186 18-47 (61)
23 PF14162 YozD: YozD-like prote 25.3 49 0.0011 24.4 1.6 16 66-81 15-30 (57)
24 PRK08476 F0F1 ATP synthase sub 24.5 55 0.0012 26.2 2.0 22 155-176 10-31 (141)
25 COG3462 Predicted membrane pro 24.5 55 0.0012 27.1 2.0 30 156-185 52-81 (117)
26 COG2886 Uncharacterized small 24.4 48 0.001 25.9 1.5 17 65-81 55-71 (88)
27 PRK14471 F0F1 ATP synthase sub 24.1 55 0.0012 26.3 1.9 23 154-176 10-32 (164)
28 PRK07021 fliL flagellar basal 24.0 89 0.0019 25.5 3.1 16 161-176 27-42 (162)
29 PRK14475 F0F1 ATP synthase sub 23.2 56 0.0012 26.6 1.8 19 156-174 12-30 (167)
30 PRK06568 F0F1 ATP synthase sub 23.2 62 0.0013 27.1 2.1 22 155-176 7-28 (154)
31 PF09753 Use1: Membrane fusion 23.0 88 0.0019 27.0 3.1 46 126-173 202-247 (251)
32 COG4736 CcoQ Cbb3-type cytochr 23.0 84 0.0018 23.1 2.5 24 154-177 10-33 (60)
33 PLN03156 GDSL esterase/lipase; 22.9 73 0.0016 29.0 2.7 33 152-184 5-43 (351)
34 PF02416 MttA_Hcf106: mttA/Hcf 22.6 81 0.0018 21.9 2.3 20 154-177 1-20 (53)
35 PRK13461 F0F1 ATP synthase sub 22.3 59 0.0013 26.0 1.7 22 155-176 8-29 (159)
36 KOG2927 Membrane component of 22.0 57 0.0012 31.5 1.9 20 156-175 232-251 (372)
37 COG1972 NupC Nucleoside permea 21.9 80 0.0017 30.8 2.8 25 148-172 86-110 (404)
38 PF12955 DUF3844: Domain of un 21.7 82 0.0018 25.3 2.4 25 151-175 67-91 (103)
39 PRK09174 F0F1 ATP synthase sub 21.6 72 0.0016 27.4 2.2 14 159-172 55-68 (204)
40 PF03918 CcmH: Cytochrome C bi 21.6 31 0.00067 28.5 0.0 26 148-173 98-123 (148)
41 TIGR03147 cyt_nit_nrfF cytochr 21.5 72 0.0016 26.3 2.1 21 149-169 99-119 (126)
42 PRK03625 tatE twin arginine tr 21.2 81 0.0018 23.5 2.1 21 153-177 3-23 (67)
43 PRK12785 fliL flagellar basal 21.1 44 0.00095 27.7 0.8 9 168-176 41-49 (166)
44 MTH00119 CYTB cytochrome b; Pr 21.0 1.4E+02 0.003 28.1 4.1 24 173-196 245-272 (380)
45 PF14257 DUF4349: Domain of un 20.7 84 0.0018 27.0 2.4 23 134-156 210-232 (262)
46 TIGR00998 8a0101 efflux pump m 20.3 93 0.002 26.8 2.7 31 153-183 4-35 (334)
47 KOG2365 Uncharacterized membra 20.2 72 0.0016 33.3 2.2 32 145-176 740-776 (808)
48 PRK08476 F0F1 ATP synthase sub 20.0 90 0.0019 25.0 2.3 19 157-175 7-25 (141)
49 COG1862 YajC Preprotein transl 20.0 83 0.0018 24.8 2.1 18 151-168 7-24 (97)
No 1
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=76.71 E-value=2 Score=35.10 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=18.2
Q ss_pred HHHhhcceeehh----hhHHHHHHHHHHHHhhhhccC
Q 028172 144 LLLTLGGTFFLG----FWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 144 ~LL~lG~tfFl~----F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
+.|.-||.|.+- ||-+|...+++|...||+|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kp 42 (175)
T PRK14472 6 IILLSGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGP 42 (175)
T ss_pred hhhhcCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445667755443 455555555555555666655
No 2
>PF09188 DUF1951: Domain of unknown function (DUF1951); InterPro: IPR015271 Members of this family of Mycoplasma hypothetical proteins adopt a multi-helical structure that contains a buried central helix. Their function has not, as yet, been determined. ; PDB: 1TM9_A.
Probab=54.62 E-value=7.2 Score=32.81 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=30.5
Q ss_pred ccchhHHHH-HhhhhhccCccCcchhHHHHHhhc--ceeehhhhHHHHHHHHHHHHhhhhccCccccCCCCC
Q 028172 117 DKSLADQRE-RSMALNSEGLEGLVPRAKLLLTLG--GTFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNS 185 (212)
Q Consensus 117 ~r~~~~QRe-RSmALNSEGLEGLiPRAk~LL~lG--~tfFl~F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~ 185 (212)
-.++.+|-+ |-.+.|+ .+-|.+.| |-..++|.--=--+...||..||+|--+|.||.++.
T Consensus 54 ~~nE~~q~~~~k~~inn---------~~T~~tv~~~~q~v~S~Fstn~e~~~~FC~~YfLy~~~F~~D~nkk 116 (137)
T PF09188_consen 54 IKNEPTQHEIRKFAINN---------IKTLSTVGEEGQYVASLFSTNKEIAIIFCLYYFLYHFSFLFDDNKK 116 (137)
T ss_dssp S-SHHHHHHHHHHHHHH---------HHHHTT--SS---STHHHHS-HHHHHHHHHHHHHHHTT-S-----S
T ss_pred HhcCchHHHHHHHHHHH---------HHHHHHhhhhHHHHHHHHhcCchHHHHHHHHHHHHHhhccccchHH
Confidence 335666665 6666665 46666666 334455543222233469999999999999999875
No 3
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=53.77 E-value=9.5 Score=28.64 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHhhhhccC
Q 028172 156 FWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
||-+|..++++|+.-||+|+|
T Consensus 3 ~~~~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 3 FWQLINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888876
No 4
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=52.82 E-value=12 Score=28.79 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=27.3
Q ss_pred hcceeehhhhHHHHHHHHHHHHhhhhccCccccCCCCCCCCCCCCC
Q 028172 148 LGGTFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSPMSPAQYG 193 (212)
Q Consensus 148 lG~tfFl~F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~~~~pp~Yi 193 (212)
.+...+++...+++++|++++..||+. +-+..+.....|.||
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVI----LRer~~~~~~~p~~~ 101 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVI----LRERQKSIRNQPSFM 101 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEE----EecccccccCCCCcC
Confidence 355667777788888888877777653 445555555566664
No 5
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.65 E-value=12 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=15.9
Q ss_pred eehhhhHHHHHHHHHHHHhhhhccC
Q 028172 152 FFLGFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.+..||-+|..++++|..-||+|+|
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~p 42 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGP 42 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666777765
No 6
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=49.41 E-value=14 Score=32.49 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhccCccccCCC
Q 028172 162 VTVGFFSALYFYFGPTFVHDAS 183 (212)
Q Consensus 162 v~~~~F~a~Y~~fG~~FiH~g~ 183 (212)
+++.+|.++||.||.-+=|-.-
T Consensus 208 i~~~l~~~~Y~i~g~~~n~~~~ 229 (268)
T PF09451_consen 208 IILFLFLAAYLIFGSWYNYNRY 229 (268)
T ss_pred HHHHHHHHHHhhhhhheeeccC
Confidence 3445556999999998876553
No 7
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=47.65 E-value=14 Score=33.22 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=23.9
Q ss_pred HHhhcceeehh-hhHHHHHHHHHHHHhhhhccCcc
Q 028172 145 LLTLGGTFFLG-FWPLILVTVGFFSALYFYFGPTF 178 (212)
Q Consensus 145 LL~lG~tfFl~-F~PlI~v~~~~F~a~Y~~fG~~F 178 (212)
-|+.|+..|+| |.=++++=..+|+++|+..|..|
T Consensus 149 YlS~~~lgll~~~~~laivRlilF~i~~~~~g~~f 183 (232)
T TIGR00869 149 YLSLGALGIIGGFFAVAILRLILFVLTLIVVKPGI 183 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 35666666665 44555666789999999988665
No 8
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=46.29 E-value=19 Score=29.36 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHhhhhccC
Q 028172 157 WPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 157 ~PlI~v~~~~F~a~Y~~fG~ 176 (212)
|-+|-.++++|...||+|.|
T Consensus 24 ~~iinflIl~~lL~~fl~kp 43 (174)
T PRK07352 24 TNLINLAIVIGLLYYFGRGF 43 (174)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555555554
No 9
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.59 E-value=7.3 Score=33.61 Aligned_cols=19 Identities=32% Similarity=0.719 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhh
Q 028172 155 GFWPLILVTVGFFSALYFY 173 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~ 173 (212)
.=|++|+++.++|.++|+|
T Consensus 44 vGWrvIa~~~~~Yg~lYlY 62 (171)
T PF04799_consen 44 VGWRVIAVSGSLYGGLYLY 62 (171)
T ss_dssp -------------------
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3499999999999999998
No 10
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=39.61 E-value=21 Score=28.52 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHhhh
Q 028172 155 GFWPLILVTVGFFSALYF 172 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~ 172 (212)
.||-+|..++.+|+..||
T Consensus 4 ~~w~~i~f~i~l~~l~~~ 21 (159)
T PRK09173 4 TFWAFVGLVLFLALVVYL 21 (159)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 477777766666666666
No 11
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.08 E-value=25 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=17.1
Q ss_pred eehhhhHHHHHHHHHHHHhhhhccC
Q 028172 152 FFLGFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.++.||=+|..++++|..-||+|+|
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~kp 32 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLYRP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777776
No 12
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.38 E-value=29 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhccC
Q 028172 154 LGFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
..||-+|..++++|..-+|+|.|
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~P 55 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPR 55 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676666666666666776664
No 13
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=34.86 E-value=25 Score=34.24 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCccccC
Q 028172 154 LGFWPLILVTVGFFSALYFYFGPTFVHD 181 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~~FiH~ 181 (212)
+.|||||+++++|+.+++ +|+=+|.
T Consensus 5 ~~fGPlliA~alf~~~if---~Pss~~~ 29 (415)
T COG3966 5 MIFGPLLIAFALFILLIF---LPSSWFT 29 (415)
T ss_pred cchhHHHHHHHHHHHHHH---hhhHHhh
Confidence 579999999988877665 4544443
No 14
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=34.39 E-value=29 Score=28.37 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHhhhhccC
Q 028172 155 GFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.||-+|...+++|..-||+|+|
T Consensus 19 ~~~~~i~Flil~~iL~~~~~kp 40 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWDV 40 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3444454555555555666654
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.22 E-value=23 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=7.2
Q ss_pred eehhhhHHHHHHHHHH
Q 028172 152 FFLGFWPLILVTVGFF 167 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F 167 (212)
+|+.|.-+|++++++|
T Consensus 4 l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLF 19 (130)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 16
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.78 E-value=35 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=17.5
Q ss_pred cceeehhhhH-HHHHHHHHHHHhhhhcc
Q 028172 149 GGTFFLGFWP-LILVTVGFFSALYFYFG 175 (212)
Q Consensus 149 G~tfFl~F~P-lI~v~~~~F~a~Y~~fG 175 (212)
||.=.|.|+| .+++.++.|+.+|+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~i~Flil~~iL~ 34 (173)
T PRK13460 7 KGLSLLDVNPGLVVWTLVTFLVVVLVLK 34 (173)
T ss_pred CCCCccCCcHhHHHHHHHHHHHHHHHHH
Confidence 4433444454 77777888888887653
No 17
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.70 E-value=39 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccCccccCCCCCCCCCCCCC
Q 028172 155 GFWPLILVTVGFFSALYFYFGPTFVHDASNSPMSPAQYG 193 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~~~~pp~Yi 193 (212)
|=|+||++.+++| ++|+....-++.. .+..|+|||
T Consensus 2 GS~~Fi~~~~~~~-~~Wi~~N~~~~~~---~~fDpyPFi 36 (108)
T PF06210_consen 2 GSWTFIIIFTVFL-AVWILLNILAPPR---PAFDPYPFI 36 (108)
T ss_pred CcHHHHHHHHHHH-HHHHHHHhhcccc---CCCCCccHH
Confidence 4588888776655 4555555443333 234666654
No 18
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=28.02 E-value=52 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.070 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHhhhhcc
Q 028172 156 FWPLILVTVGFFSALYFYFG 175 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~fG 175 (212)
||-.|..++++|...||+++
T Consensus 30 ~~~~inflil~~iL~~f~~~ 49 (184)
T PRK13455 30 FVVTLAFLLFIGILVYFKVP 49 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35555555555555555444
No 19
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.02 E-value=44 Score=26.89 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhhhhccC
Q 028172 157 WPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 157 ~PlI~v~~~~F~a~Y~~fG~ 176 (212)
|=+|...+.+|..-+|+|+|
T Consensus 27 ~~~inFliL~~lL~k~l~~P 46 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYKP 46 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555666665
No 20
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=26.91 E-value=37 Score=26.32 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=15.4
Q ss_pred HHHhhcceeehhhhHHHHHHHHHHHHhh
Q 028172 144 LLLTLGGTFFLGFWPLILVTVGFFSALY 171 (212)
Q Consensus 144 ~LL~lG~tfFl~F~PlI~v~~~~F~a~Y 171 (212)
+|+++-...|+||+- ++..+.+++|
T Consensus 54 LlIsl~aSvFlGFG~---vFLLLwVGIY 78 (79)
T KOG4452|consen 54 LLISLTASVFLGFGS---VFLLLWVGIY 78 (79)
T ss_pred HHHHHHHHHHHhhhH---HHHHHHHhhc
Confidence 456677777888774 3344555555
No 21
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.65 E-value=54 Score=27.71 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHhhhhc
Q 028172 156 FWPLILVTVGFFSALYFYF 174 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~f 174 (212)
|+..|+.+++.|+++|+++
T Consensus 9 ~~sqifw~iI~FlILy~ll 27 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFV 27 (155)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4445555555556655554
No 22
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=25.70 E-value=75 Score=23.73 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhh--ccCccccCCCCCC
Q 028172 159 LILVTVGFFSALYFY--FGPTFVHDASNSP 186 (212)
Q Consensus 159 lI~v~~~~F~a~Y~~--fG~~FiH~g~~~~ 186 (212)
||++++.+|..+|++ =|++++|.-++..
T Consensus 18 Liliis~~f~lI~~l~qq~~~y~HH~d~Ss 47 (61)
T PF06692_consen 18 LILIISFVFFLITSLGQQGNTYVHHFDNSS 47 (61)
T ss_pred HHHHHHHHHHHHhhhccCCCeeEEeecCcc
Confidence 344555556555554 3678999877653
No 23
>PF14162 YozD: YozD-like protein
Probab=25.34 E-value=49 Score=24.39 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.6
Q ss_pred hhhHHHHHHcCCCCCC
Q 028172 66 SLFMKELKRRGMTPTS 81 (212)
Q Consensus 66 SlF~KELkRRGmap~S 81 (212)
.-|-+||.|||.-|+-
T Consensus 15 efFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 15 EFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHccCCCcH
Confidence 4689999999998864
No 24
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.50 E-value=55 Score=26.20 Aligned_cols=22 Identities=5% Similarity=0.100 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHhhhhccC
Q 028172 155 GFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.+|=+|...+++|..-.|+|+|
T Consensus 10 ~~~qli~Flil~~~l~kfl~kP 31 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKP 31 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666665
No 25
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.46 E-value=55 Score=27.14 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHhhhhccCccccCCCCC
Q 028172 156 FWPLILVTVGFFSALYFYFGPTFVHDASNS 185 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~ 185 (212)
+-|+..++|.+|..++.|+=--=+|+|+.+
T Consensus 52 ImpI~~~vvli~lvvfm~~~~g~~r~~~~~ 81 (117)
T COG3462 52 IMPIFWAVVLIFLVVFMFYILGAVRRGSDD 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 558888888877777777655567778764
No 26
>COG2886 Uncharacterized small protein [Function unknown]
Probab=24.37 E-value=48 Score=25.91 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.7
Q ss_pred hhhhHHHHHHcCCCCCC
Q 028172 65 ESLFMKELKRRGMTPTS 81 (212)
Q Consensus 65 ESlF~KELkRRGmap~S 81 (212)
--.|++||++||..+-+
T Consensus 55 l~ef~~eL~~R~i~l~~ 71 (88)
T COG2886 55 LNEFEEELRKRGIPLYD 71 (88)
T ss_pred HHHHHHHHHHhCCCccc
Confidence 35799999999996654
No 27
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.07 E-value=55 Score=26.27 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhccC
Q 028172 154 LGFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
..||=+|..++++|..-+|+|+|
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~p 32 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555565566666666666665
No 28
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.00 E-value=89 Score=25.50 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhccC
Q 028172 161 LVTVGFFSALYFYFGP 176 (212)
Q Consensus 161 ~v~~~~F~a~Y~~fG~ 176 (212)
++..+.+.+.|||++.
T Consensus 27 ~l~~~g~gg~~~~~~~ 42 (162)
T PRK07021 27 LLAAAAGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344457788888876
No 29
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.23 E-value=56 Score=26.59 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHhhhhc
Q 028172 156 FWPLILVTVGFFSALYFYF 174 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~f 174 (212)
||-+|..++++|..+|+.|
T Consensus 12 ~w~~i~f~il~~iL~~~k~ 30 (167)
T PRK14475 12 FWVGAGLLIFFGILIALKV 30 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6766655555555554544
No 30
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=23.17 E-value=62 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHhhhhccC
Q 028172 155 GFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.||-+|..++++|..-.|.|||
T Consensus 7 ~fwq~I~FlIll~ll~kfawkP 28 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKA 28 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4787777777777766666665
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=23.05 E-value=88 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=30.4
Q ss_pred HhhhhhccCccCcchhHHHHHhhcceeehhhhHHHHHHHHHHHHhhhh
Q 028172 126 RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALYFY 173 (212)
Q Consensus 126 RSmALNSEGLEGLiPRAk~LL~lG~tfFl~F~PlI~v~~~~F~a~Y~~ 173 (212)
..+.=|..+|..-=-|.+...+.++. ..+|=+|++++++|.+.|++
T Consensus 202 ~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 202 EGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777788888876666 34444666666667777665
No 32
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.95 E-value=84 Score=23.09 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCc
Q 028172 154 LGFWPLILVTVGFFSALYFYFGPT 177 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~~ 177 (212)
.-+|=+|+.+..|.+++|+.|.+.
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 446677888888889999999885
No 33
>PLN03156 GDSL esterase/lipase; Provisional
Probab=22.91 E-value=73 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=26.2
Q ss_pred eehhhhHHHHHHHHHHHH------hhhhccCccccCCCC
Q 028172 152 FFLGFWPLILVTVGFFSA------LYFYFGPTFVHDASN 184 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F~a------~Y~~fG~~FiH~g~~ 184 (212)
.||.|.-+|+.++....+ -.|.||.|.+--|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~aifvFGDSl~D~GN~ 43 (351)
T PLN03156 5 LFLIFFLLLAQLLVLVAETCAKVPAIIVFGDSSVDAGNN 43 (351)
T ss_pred hhhHHHHHHHHHHHHHhcccCCCCEEEEecCcCccCCCc
Confidence 477888888888887763 268999999999974
No 34
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=22.62 E-value=81 Score=21.94 Aligned_cols=20 Identities=35% Similarity=0.756 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCc
Q 028172 154 LGFWPLILVTVGFFSALYFYFGPT 177 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~~ 177 (212)
+|+|=++++.++++ ++|||+
T Consensus 1 ig~~El~iI~vval----llfGp~ 20 (53)
T PF02416_consen 1 IGFPELLIILVVAL----LLFGPK 20 (53)
T ss_dssp S-HHHHHHHHHHHH----HHS-TT
T ss_pred CCHHHHHHHHHHHH----HHhCch
Confidence 35666666655443 478875
No 35
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.29 E-value=59 Score=25.97 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHhhhhccC
Q 028172 155 GFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 155 ~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
.||=+|..++++|..-||+|+|
T Consensus 8 ~~~~~inF~il~~iL~~f~~kp 29 (159)
T PRK13461 8 IIATIINFIILLLILKHFFFDK 29 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4555565566666666777765
No 36
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=57 Score=31.48 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHhhhhcc
Q 028172 156 FWPLILVTVGFFSALYFYFG 175 (212)
Q Consensus 156 F~PlI~v~~~~F~a~Y~~fG 175 (212)
|.-|.+|=..+|+++|++.|
T Consensus 232 IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 232 ILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44444555678999999888
No 37
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=21.93 E-value=80 Score=30.81 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.9
Q ss_pred hcceeehhhhHHHHHHHHHHHHhhh
Q 028172 148 LGGTFFLGFWPLILVTVGFFSALYF 172 (212)
Q Consensus 148 lG~tfFl~F~PlI~v~~~~F~a~Y~ 172 (212)
-|..||+--+|-|+.++++++.+|-
T Consensus 86 ~gf~Fa~~VL~~IiF~saLi~iLyy 110 (404)
T COG1972 86 AGFIFAFRVLPPIIFISALISILYY 110 (404)
T ss_pred CceeeeHHhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999984
No 38
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=21.68 E-value=82 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=20.3
Q ss_pred eeehhhhHHHHHHHHHHHHhhhhcc
Q 028172 151 TFFLGFWPLILVTVGFFSALYFYFG 175 (212)
Q Consensus 151 tfFl~F~PlI~v~~~~F~a~Y~~fG 175 (212)
-|+|.+|=-|++++++-.++.++|.
T Consensus 67 ~F~L~~~~ti~lv~~~~~~I~lL~s 91 (103)
T PF12955_consen 67 PFWLFAGFTIALVVLVAGAIGLLFS 91 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888874
No 39
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.60 E-value=72 Score=27.43 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhhh
Q 028172 159 LILVTVGFFSALYF 172 (212)
Q Consensus 159 lI~v~~~~F~a~Y~ 172 (212)
-|+.+++.|.++|+
T Consensus 55 ~l~w~~I~FliL~~ 68 (204)
T PRK09174 55 QLLWLAITFGLFYL 68 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 40
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=21.58 E-value=31 Score=28.53 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=0.0
Q ss_pred hcceeehhhhHHHHHHHHHHHHhhhh
Q 028172 148 LGGTFFLGFWPLILVTVGFFSALYFY 173 (212)
Q Consensus 148 lG~tfFl~F~PlI~v~~~~F~a~Y~~ 173 (212)
-|.|.+|-++|++++.++++.+.+..
T Consensus 98 ~~~~~~lW~~P~~~l~~g~~~~~~~~ 123 (148)
T PF03918_consen 98 KGFTWLLWLGPFLLLLLGGALLFRRL 123 (148)
T ss_dssp --------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988887766543
No 41
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.49 E-value=72 Score=26.29 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=16.9
Q ss_pred cceeehhhhHHHHHHHHHHHH
Q 028172 149 GGTFFLGFWPLILVTVGFFSA 169 (212)
Q Consensus 149 G~tfFl~F~PlI~v~~~~F~a 169 (212)
|.|.+|-++|++++.++++..
T Consensus 99 ~~t~~LW~~P~lll~~G~~~~ 119 (126)
T TIGR03147 99 WQTLLLWLLPVLLLLLAFVLL 119 (126)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 678999999999987766543
No 42
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=21.17 E-value=81 Score=23.46 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=13.4
Q ss_pred ehhhhHHHHHHHHHHHHhhhhccCc
Q 028172 153 FLGFWPLILVTVGFFSALYFYFGPT 177 (212)
Q Consensus 153 Fl~F~PlI~v~~~~F~a~Y~~fG~~ 177 (212)
-+++|=+++|.+++ .++|||.
T Consensus 3 ~ig~~elliIlvI~----lllFGpk 23 (67)
T PRK03625 3 EISITKLLVVAALV----VLLFGTK 23 (67)
T ss_pred CCcHHHHHHHHHHH----HHHcCcc
Confidence 46777666655443 3678885
No 43
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.07 E-value=44 Score=27.66 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=6.2
Q ss_pred HHhhhhccC
Q 028172 168 SALYFYFGP 176 (212)
Q Consensus 168 ~a~Y~~fG~ 176 (212)
.+.||+|+.
T Consensus 41 ~g~~f~~~~ 49 (166)
T PRK12785 41 GGGFFFFFS 49 (166)
T ss_pred hheEEEEEe
Confidence 567777765
No 44
>MTH00119 CYTB cytochrome b; Provisional
Probab=21.00 E-value=1.4e+02 Score=28.06 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=15.4
Q ss_pred hccCccccCC----CCCCCCCCCCCCcc
Q 028172 173 YFGPTFVHDA----SNSPMSPAQYGDPY 196 (212)
Q Consensus 173 ~fG~~FiH~g----~~~~~~pp~YidP~ 196 (212)
.|.|.++++- ...|..+|..|.||
T Consensus 245 ~~~P~~l~~p~n~~panp~~TP~~i~PE 272 (380)
T MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPE 272 (380)
T ss_pred HhCCCcccCccccccCCCCCCCCCCCcc
Confidence 4557777764 22456677778775
No 45
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.69 E-value=84 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=16.4
Q ss_pred CccCcchhHHHHHhhcceeehhh
Q 028172 134 GLEGLVPRAKLLLTLGGTFFLGF 156 (212)
Q Consensus 134 GLEGLiPRAk~LL~lG~tfFl~F 156 (212)
.-.++..+...-++-|...|..|
T Consensus 210 ~~~~~~~~~~~al~~~~~~~~~~ 232 (262)
T PF14257_consen 210 ESPSFGSRFRDALKNGWNALVSF 232 (262)
T ss_pred CCCCcchHHHHHHHHHHHHHHHH
Confidence 55688888887777777666555
No 46
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.34 E-value=93 Score=26.79 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=16.1
Q ss_pred ehhhhHHHHHHHHHHH-HhhhhccCccccCCC
Q 028172 153 FLGFWPLILVTVGFFS-ALYFYFGPTFVHDAS 183 (212)
Q Consensus 153 Fl~F~PlI~v~~~~F~-a~Y~~fG~~FiH~g~ 183 (212)
|+.+|+++++++++++ ++|++++.+++-.+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 35 (334)
T TIGR00998 4 FLLLLVVLLIVVAGAYAIYWFLVLRDYESTDD 35 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCceeeccc
Confidence 4444555555554444 555556666554433
No 47
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.15 E-value=72 Score=33.28 Aligned_cols=32 Identities=41% Similarity=0.780 Sum_probs=27.0
Q ss_pred HHhhcceeehh-----hhHHHHHHHHHHHHhhhhccC
Q 028172 145 LLTLGGTFFLG-----FWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 145 LL~lG~tfFl~-----F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
|--+||.++|| +||+|+-++.+|+-+|+..|-
T Consensus 740 LAIiGG~y~lgl~gaiiGpiilc~~~v~snIyl~~~~ 776 (808)
T KOG2365|consen 740 LAIIGGVYLLGLVGAIIGPIILCFVMVFSNIYLLQGA 776 (808)
T ss_pred ehhhccchhhhhhhhhhhhhHHHHHHHHHHHHHHhcc
Confidence 44578888876 799999999999999998764
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.04 E-value=90 Score=24.98 Aligned_cols=19 Identities=26% Similarity=0.189 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhhhhcc
Q 028172 157 WPLILVTVGFFSALYFYFG 175 (212)
Q Consensus 157 ~PlI~v~~~~F~a~Y~~fG 175 (212)
|+.+++.++.|.++|+++.
T Consensus 7 ~~~~~~qli~Flil~~~l~ 25 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILN 25 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777888877764
No 49
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.04 E-value=83 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=8.6
Q ss_pred eeehhhhHHHHHHHHHHH
Q 028172 151 TFFLGFWPLILVTVGFFS 168 (212)
Q Consensus 151 tfFl~F~PlI~v~~~~F~ 168 (212)
.++..+.||+++++.||.
T Consensus 7 ~~~~~ll~~vl~~~ifyF 24 (97)
T COG1862 7 SGLVLLLPLVLIFAIFYF 24 (97)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 444445555554444443
Done!