Query 028172
Match_columns 212
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 11:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf4_B Protein (activated P21C 68.3 2.9 9.9E-05 28.4 2.2 19 176-194 15-38 (44)
2 1tm9_A GI3844938, hypothetical 34.0 20 0.00068 28.7 2.1 63 115-186 52-117 (137)
3 2rdd_B UPF0092 membrane protei 30.4 29 0.00098 21.6 2.0 11 154-164 4-14 (37)
4 2l16_A SEC-independent protein 25.1 38 0.0013 24.5 2.2 22 152-177 3-24 (78)
5 1x8b_A WEE1HU, WEE1-like prote 19.3 37 0.0013 25.5 1.1 29 174-202 178-206 (289)
6 1vf5_B Subunit IV; photosynthe 16.5 1.7E+02 0.0057 23.5 4.4 24 172-196 55-78 (160)
7 2k8j_X P7TM2; P7 polypeptide, 16.1 36 0.0012 21.3 0.3 13 153-165 10-22 (29)
8 3fyr_A Sporulation inhibitor S 15.6 45 0.0015 22.7 0.7 15 66-80 29-43 (48)
9 3dez_A OPRT, oprtase, orotate 15.2 29 0.00099 29.2 -0.4 65 136-204 12-82 (243)
10 3vw7_A Proteinase-activated re 15.1 93 0.0032 25.5 2.6 24 142-165 389-412 (484)
No 1
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=68.34 E-value=2.9 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=13.0
Q ss_pred CccccCCCCCCC-----CCCCCCC
Q 028172 176 PTFVHDASNSPM-----SPAQYGD 194 (212)
Q Consensus 176 ~~FiH~g~~~~~-----~pp~Yid 194 (212)
-||||-|+..+. .+|.|||
T Consensus 15 ~SFiHtgHGd~~~~~sWG~P~~id 38 (44)
T 1cf4_B 15 NSFIHTGHGDSDPRHCWGFPDRID 38 (44)
T ss_dssp SCCCCCCCCCCCCSSCCCSSCCCC
T ss_pred ccceecCCCCCCcccccCChhHHh
Confidence 489999987544 3455665
No 2
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=33.97 E-value=20 Score=28.74 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=38.3
Q ss_pred hhccchhHHHHH-hhhhhccCccCcchhHHHHHhhcc--eeehhhhHHHHHHHHHHHHhhhhccCccccCCCCCC
Q 028172 115 EIDKSLADQRER-SMALNSEGLEGLVPRAKLLLTLGG--TFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSP 186 (212)
Q Consensus 115 e~~r~~~~QReR-SmALNSEGLEGLiPRAk~LL~lG~--tfFl~F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~~ 186 (212)
|+-+++.+|-|- -.|.|+ -|-|-+.|. -+.-.|.-----....||++||++-=.|+||..+..
T Consensus 52 ei~k~e~~q~ei~k~ai~n---------iktlssvgasgqy~as~fst~~e~aiifci~yflyhf~fl~d~nkkq 117 (137)
T 1tm9_A 52 EITKDENQQIEITKIAVNN---------IKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQ 117 (137)
T ss_dssp TTSCSHHHHHHHHHHHHHH---------HHHHTTCCSSCCCSTHHHHSCHHHHHHHHHHHHHHHTTCSCCCCCSS
T ss_pred HHhhCcchhhhHHHHHHhh---------hhhHhhcCcchhhHHHHhccCCCceehhhHHHHHHHhcccccccHHH
Confidence 344567777773 344443 466666673 233344322222234689999999999999998754
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=30.36 E-value=29 Score=21.64 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=5.4
Q ss_pred hhhhHHHHHHH
Q 028172 154 LGFWPLILVTV 164 (212)
Q Consensus 154 l~F~PlI~v~~ 164 (212)
..++|++++++
T Consensus 4 ~~~l~~v~~~~ 14 (37)
T 2rdd_B 4 SLILMLVVFGL 14 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556554443
No 4
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=25.07 E-value=38 Score=24.49 Aligned_cols=22 Identities=36% Similarity=0.461 Sum_probs=14.4
Q ss_pred eehhhhHHHHHHHHHHHHhhhhccCc
Q 028172 152 FFLGFWPLILVTVGFFSALYFYFGPT 177 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F~a~Y~~fG~~ 177 (212)
|-+|+|-+|++.+++ .++|||.
T Consensus 3 f~ig~~ElliIlvVa----LlvfGpk 24 (78)
T 2l16_A 3 SNIGIPGLILIFVIA----LIIFGPS 24 (78)
T ss_dssp SSSCHHHHHHHHHHH----HHHSCTT
T ss_pred CCCCHHHHHHHHHHH----hheeCcc
Confidence 346777777665543 5688985
No 5
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=19.31 E-value=37 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=19.7
Q ss_pred ccCccccCCCCCCCCCCCCCCcccccccc
Q 028172 174 FGPTFVHDASNSPMSPAQYGDPYALLEDE 202 (212)
Q Consensus 174 fG~~FiH~g~~~~~~pp~YidP~~LLede 202 (212)
||.+...+......+++.|++|+.+....
T Consensus 178 fg~~~~~~~~~~~~gt~~y~aPE~~~~~~ 206 (289)
T 1x8b_A 178 LGHVTRISSPQVEEGDSRFLANEVLQENY 206 (289)
T ss_dssp CTTCEETTCSCCCCCCGGGCCHHHHTTCC
T ss_pred cccccccCCccccCCCccccChhHhcCCC
Confidence 55444444445566889999999987653
No 6
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=16.47 E-value=1.7e+02 Score=23.50 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.5
Q ss_pred hhccCccccCCCCCCCCCCCCCCcc
Q 028172 172 FYFGPTFVHDASNSPMSPAQYGDPY 196 (212)
Q Consensus 172 ~~fG~~FiH~g~~~~~~pp~YidP~ 196 (212)
.+|.|+..-| ...|..+|..|-||
T Consensus 55 ~~f~P~~Lgd-pAnPl~TP~hI~PE 78 (160)
T 1vf5_B 55 SVLDPAMVGE-PANPFATPLEILPE 78 (160)
T ss_dssp HHHSCCBCCC-BCCSSCCCSCCCCT
T ss_pred HhcCcHHHHh-cccccCCCCCCCCc
Confidence 3455555544 34577888888885
No 7
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=16.09 E-value=36 Score=21.29 Aligned_cols=13 Identities=38% Similarity=1.129 Sum_probs=10.2
Q ss_pred ehhhhHHHHHHHH
Q 028172 153 FLGFWPLILVTVG 165 (212)
Q Consensus 153 Fl~F~PlI~v~~~ 165 (212)
+++.|||.+...+
T Consensus 10 ~~g~WpllLllLa 22 (29)
T 2k8j_X 10 LYGVWPLLLLLLA 22 (29)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHh
Confidence 5789999887654
No 8
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=15.62 E-value=45 Score=22.69 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=10.5
Q ss_pred hhhHHHHHHcCCCCC
Q 028172 66 SLFMKELKRRGMTPT 80 (212)
Q Consensus 66 SlF~KELkRRGmap~ 80 (212)
.+..+|+.||++.+.
T Consensus 29 ~LL~~Ei~RR~L~~~ 43 (48)
T 3fyr_A 29 ELIENEIKRRSLGHI 43 (48)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCccc
Confidence 567899999999775
No 9
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=15.23 E-value=29 Score=29.17 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=27.6
Q ss_pred cCcchhHHHHHhhcceeehhhhHHH---HHHHHHHHHhhhhccC--ccc-cCCCCCCCCCCCCCCcccccccccc
Q 028172 136 EGLVPRAKLLLTLGGTFFLGFWPLI---LVTVGFFSALYFYFGP--TFV-HDASNSPMSPAQYGDPYALLEDERI 204 (212)
Q Consensus 136 EGLiPRAk~LL~lG~tfFl~F~PlI---~v~~~~F~a~Y~~fG~--~Fi-H~g~~~~~~pp~YidP~~LLederi 204 (212)
.||+||..-|-..-|.-=.+=+|.- .+.-.++-.--+.||+ .|. |+|... |-|+|=..++.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~L~~~gav~~~~~g~F~L~SG~~S----p~Y~d~~~~l~~p~~ 82 (243)
T 3dez_A 12 SGLVPRGSHMASMTGGQQMGRGSMTLAKDIARDLLDIKAVYLKPEEPFTWASGIKS----PIYTDNRITLSYPET 82 (243)
T ss_dssp ------------------CEESCHHHHHHHHHHHHHHTSEEECTTSCEEC---CEE----SEEECTTGGGGCHHH
T ss_pred CCcccCCccCCCCCCccccCCCccHHHHHHHHHHHHCCCEEEcCCCcEEeCCCCCC----CEEEeCHHhccCHHH
Confidence 4788888877776665566666652 1233344444567887 787 888653 678998888877653
No 10
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=15.08 E-value=93 Score=25.49 Aligned_cols=24 Identities=17% Similarity=0.168 Sum_probs=18.6
Q ss_pred HHHHHhhcceeehhhhHHHHHHHH
Q 028172 142 AKLLLTLGGTFFLGFWPLILVTVG 165 (212)
Q Consensus 142 Ak~LL~lG~tfFl~F~PlI~v~~~ 165 (212)
+|.|+-+=++|++...|+.++.+.
T Consensus 389 ~k~l~~v~~~F~icwlP~~i~~l~ 412 (484)
T 3vw7_A 389 LFLSAAVFCIFIICFGPTNVLLIA 412 (484)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456677888999999998876553
Done!