Query 028172
Match_columns 212
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 11:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028172.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028172hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tm9a_ a.225.1.1 (A:) Hypothe 34.0 9.4 0.00068 28.7 2.1 63 115-186 52-117 (137)
2 d1u5ra_ d.144.1.7 (A:) Serine/ 19.8 18 0.0013 28.1 1.4 18 183-200 168-185 (309)
3 d2enda_ a.18.1.1 (A:) T4 endon 17.7 24 0.0018 26.6 1.7 15 67-81 72-86 (137)
4 d1qf8a_ g.41.4.1 (A:) Casein k 16.2 15 0.0011 28.3 0.0 8 173-180 152-159 (173)
5 d1jb0i_ f.23.17.1 (I:) Subunit 15.6 22 0.0016 21.9 0.8 31 150-180 3-33 (38)
6 d2axti1 f.23.37.1 (I:1-35) Pho 15.0 40 0.0029 20.3 1.9 16 160-175 7-22 (35)
7 d1jb0x_ f.23.20.1 (X:) Subunit 14.2 60 0.0044 18.6 2.4 21 152-172 4-24 (29)
8 d1fota_ d.144.1.7 (A:) cAMP-de 13.5 38 0.0027 26.2 1.8 21 180-200 155-175 (316)
9 d1pv0a_ a.2.12.1 (A:) Sporulat 12.7 45 0.0033 21.1 1.7 15 66-80 27-41 (46)
10 d1xl4a2 f.14.1.1 (A:23-138) In 11.3 73 0.0053 21.1 2.6 23 154-176 29-51 (116)
No 1
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=33.97 E-value=9.4 Score=28.74 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=38.3
Q ss_pred hhccchhHHHHH-hhhhhccCccCcchhHHHHHhhcc--eeehhhhHHHHHHHHHHHHhhhhccCccccCCCCCC
Q 028172 115 EIDKSLADQRER-SMALNSEGLEGLVPRAKLLLTLGG--TFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSP 186 (212)
Q Consensus 115 e~~r~~~~QReR-SmALNSEGLEGLiPRAk~LL~lG~--tfFl~F~PlI~v~~~~F~a~Y~~fG~~FiH~g~~~~ 186 (212)
|+-+++.+|-|- -.|.|+ -|-|-+.|. -+.-.|.-----....||++||++-=.|+||..+..
T Consensus 52 ei~k~e~~q~ei~k~ai~n---------iktlssvgasgqy~as~fst~~e~aiifci~yflyhf~fl~d~nkkq 117 (137)
T d1tm9a_ 52 EITKDENQQIEITKIAVNN---------IKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQ 117 (137)
T ss_dssp TTSCSHHHHHHHHHHHHHH---------HHHHTTCCSSCCCSTHHHHSCHHHHHHHHHHHHHHHTTCSCCCCCSS
T ss_pred HHhhCcchhhhHHHHHHhh---------hhhHhhcCcchhhHHHHhccCCCceehhhHHHHHHHhcccccccHHH
Confidence 344567777773 344443 466666673 233344322222234689999999999999998754
No 2
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.84 E-value=18 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCcccccc
Q 028172 183 SNSPMSPAQYGDPYALLE 200 (212)
Q Consensus 183 ~~~~~~pp~YidP~~LLe 200 (212)
....+++|.|++|+.+..
T Consensus 168 ~~~~~GT~~Y~APE~~~~ 185 (309)
T d1u5ra_ 168 ANSFVGTPYWMAPEVILA 185 (309)
T ss_dssp BCCCCSCGGGCCHHHHTT
T ss_pred CCccccCccccCHHHHhc
Confidence 345578999999999874
No 3
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=17.74 E-value=24 Score=26.59 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.6
Q ss_pred hhHHHHHHcCCCCCC
Q 028172 67 LFMKELKRRGMTPTS 81 (212)
Q Consensus 67 lF~KELkRRGmap~S 81 (212)
.-++||+|||+.|.-
T Consensus 72 ~L~~Em~~RGy~~~~ 86 (137)
T d2enda_ 72 ELIAECLKRGFNIKD 86 (137)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCCCCh
Confidence 468999999998773
No 4
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.18 E-value=15 Score=28.33 Aligned_cols=8 Identities=63% Similarity=1.314 Sum_probs=4.8
Q ss_pred hccCcccc
Q 028172 173 YFGPTFVH 180 (212)
Q Consensus 173 ~fG~~FiH 180 (212)
|||++|.|
T Consensus 152 ~FG~sFph 159 (173)
T d1qf8a_ 152 YFGTGFPH 159 (173)
T ss_dssp GTCSSHHH
T ss_pred hccCchHH
Confidence 45666665
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.63 E-value=22 Score=21.88 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred ceeehhhhHHHHHHHHHHHHhhhhccCcccc
Q 028172 150 GTFFLGFWPLILVTVGFFSALYFYFGPTFVH 180 (212)
Q Consensus 150 ~tfFl~F~PlI~v~~~~F~a~Y~~fG~~FiH 180 (212)
|.+--+|+|-|++-++-...--...|--|||
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHhee
Confidence 4566788999988776555544555555555
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.03 E-value=40 Score=20.31 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhcc
Q 028172 160 ILVTVGFFSALYFYFG 175 (212)
Q Consensus 160 I~v~~~~F~a~Y~~fG 175 (212)
.+-+++.|.+..|.||
T Consensus 7 ~Vy~vV~fFv~lFiFG 22 (35)
T d2axti1 7 TVYIVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHh
Confidence 3445555666666777
No 7
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=14.21 E-value=60 Score=18.65 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=15.8
Q ss_pred eehhhhHHHHHHHHHHHHhhh
Q 028172 152 FFLGFWPLILVTVGFFSALYF 172 (212)
Q Consensus 152 fFl~F~PlI~v~~~~F~a~Y~ 172 (212)
.|-.||-+++..+-|.++-|.
T Consensus 4 ~frt~wa~lllainflvaayy 24 (29)
T d1jb0x_ 4 AFRTFWAVLLLAINFLVAAYY 24 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366799988888777777764
No 8
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.49 E-value=38 Score=26.15 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCCCcccccc
Q 028172 180 HDASNSPMSPAQYGDPYALLE 200 (212)
Q Consensus 180 H~g~~~~~~pp~YidP~~LLe 200 (212)
++...+..+.|.|++|+.|..
T Consensus 155 ~~~~~~~~Gt~~Y~APE~l~~ 175 (316)
T d1fota_ 155 PDVTYTLCGTPDYIAPEVVST 175 (316)
T ss_dssp SSCBCCCCSCTTTCCHHHHTT
T ss_pred ccccccccCcccccCHHHHcC
Confidence 334445668899999998754
No 9
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=12.68 E-value=45 Score=21.14 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.3
Q ss_pred hhhHHHHHHcCCCCC
Q 028172 66 SLFMKELKRRGMTPT 80 (212)
Q Consensus 66 SlF~KELkRRGmap~ 80 (212)
.|+++|+.||.++-.
T Consensus 27 ~Lie~Ei~RRsL~hk 41 (46)
T d1pv0a_ 27 ELIENEIKRRSLGHI 41 (46)
T ss_dssp HHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhhhhh
Confidence 578999999998644
No 10
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=11.32 E-value=73 Score=21.12 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhccC
Q 028172 154 LGFWPLILVTVGFFSALYFYFGP 176 (212)
Q Consensus 154 l~F~PlI~v~~~~F~a~Y~~fG~ 176 (212)
+.+.-+.+++..+|+++|++.+.
T Consensus 29 ~~~~~~~~~~~~~fa~~y~~~~~ 51 (116)
T d1xl4a2 29 TLITGLYLVTNALFALAYLACGD 51 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445566778888887654
Done!