BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028174
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 343 bits (881), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/191 (85%), Positives = 177/191 (92%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVTFGLFLARKVSL+RA+ YM+AQCLGAICGVGLVKAFMK YN GG
Sbjct: 91 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 150
Query: 82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 151 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 210
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA AAAYHQY+LRAAAIK
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
Query: 202 ALGSFRSNPSN 212
ALGSFRSNP+N
Sbjct: 271 ALGSFRSNPTN 281
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 342 bits (878), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 164/191 (85%), Positives = 177/191 (92%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVTFGLFLARKVSL+RA+ YM+AQCLGAICGVGLVKAFMK YN GG
Sbjct: 91 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 150
Query: 82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 151 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 210
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA AAAYHQY+LRAAAIK
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
Query: 202 ALGSFRSNPSN 212
ALGSFRSNP+N
Sbjct: 271 ALGSFRSNPTN 281
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/191 (85%), Positives = 176/191 (92%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVTFGLFLARKV L+RA+ YM+AQCLGAICGVGLVKAFMK YN GG
Sbjct: 110 CTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 169
Query: 82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 170 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 229
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA AAAYHQY+LRAAAIK
Sbjct: 230 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 289
Query: 202 ALGSFRSNPSN 212
ALGSFRSNP+N
Sbjct: 290 ALGSFRSNPTN 300
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 341 bits (874), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/191 (85%), Positives = 176/191 (92%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVTFGLFLARKVSL+RA+ YM+AQCLGAICGVGLVKAFMK YN GG
Sbjct: 114 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 173
Query: 82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 233
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA AAAYHQY+LRAAAIK
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
Query: 202 ALGSFRSNPSN 212
ALG FRSNP+N
Sbjct: 294 ALGEFRSNPTN 304
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 340 bits (871), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 162/191 (84%), Positives = 175/191 (91%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVTFGLFLARKV L+RA+ YM+AQCLGAICGVGLVKAFMK YN GG
Sbjct: 114 CTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 173
Query: 82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 233
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA AAAYHQY+LRAAAIK
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
Query: 202 ALGSFRSNPSN 212
ALG FRSNP+N
Sbjct: 294 ALGEFRSNPTN 304
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 10/171 (5%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGAN 84
+ G H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI ++ NSL G N
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSL--GLN 129
Query: 85 TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAT 144
+A G N G LG EIIGT LV V + TD +R RD + PL IGF+V + HL
Sbjct: 130 ALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHLLA 185
Query: 145 IPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
I TG GINPARSFG++VI +N + DHWIFWVGPF+GA A + +IL
Sbjct: 186 IDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 106/171 (61%), Gaps = 10/171 (5%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGAN 84
+ G H+NPAVT GL L+ ++S+ RA+ Y++AQC+GAI ++ NSL G N
Sbjct: 70 ISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSL--GRN 127
Query: 85 TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAT 144
+A G N G LG EIIGT LV V + TD +R RD + APL IG +V + HL
Sbjct: 128 DLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLA 183
Query: 145 IPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
I TG GINPARSFG+AVI +N + +HWIFWVGPF+G A + +IL
Sbjct: 184 IDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG
Sbjct: 104 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGG 161
Query: 82 -GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 140
G TV G L E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 162 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIG 217
Query: 141 HLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
HL I TG +NPARSFG AVI N W++HWI+WVGP +GA+ A A ++Y+
Sbjct: 218 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG
Sbjct: 65 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGG 122
Query: 82 -GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 140
G TV G L E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIG 178
Query: 141 HLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
HL I TG +NPARSFG AVI N W++HWI+WVGP +GA+ A A ++Y+
Sbjct: 179 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG
Sbjct: 65 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGG 122
Query: 82 -GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 140
G TV G L E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIG 178
Query: 141 HLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
HL I TG +NPARSFG AVI N W++HWI+WVGP +GA+ A A ++Y+
Sbjct: 179 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
C + GGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG
Sbjct: 56 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGG 113
Query: 82 -GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 140
G V G L E+I TF LV+T+F++ D KR+ + L IGF+V +
Sbjct: 114 LGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIG 169
Query: 141 HLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
HL I TG +NPARSFG AVI N W++HWI+WVGP +GA+ A ++Y+
Sbjct: 170 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 11/172 (6%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
V GGHINPA+T L + ++SL+RA Y+ AQ +GAI G G++ + N+ G A
Sbjct: 64 VSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVAPLNARGNLAVN 121
Query: 86 VASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLA 143
+ +G A+ E+I TF L +F++TD +R++ PV +P L IG +V + HL
Sbjct: 122 ALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLV 176
Query: 144 TIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
I TG +NPARSFG AV+ N HW+FWVGP VGA+ AA + Y+L
Sbjct: 177 GIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILYFYLL 226
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ G H+NPAVTF + ++SL+RA+ YMVAQ LGA+ G ++ + NT
Sbjct: 62 ISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRG-NLALNT 120
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 145
+ G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 176
Query: 146 PITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
TG G+NPARSF A++ N + +HW++WVGP +GA + + ++L
Sbjct: 177 YYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ G H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT
Sbjct: 62 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNT 120
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 145
+ G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 176
Query: 146 PITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
TG G+NPARSF A++ N + +HW++WVGP +GA + + ++L
Sbjct: 177 YYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ G H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT
Sbjct: 58 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNT 116
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 145
+ G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 117 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 172
Query: 146 PITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
TG G+NPARSF A++ N + +HW++WVGP +GA + + ++L
Sbjct: 173 YYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ G H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT
Sbjct: 56 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNT 114
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 145
+ G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 146 PITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
TG G+NPARSF A++ N + +HW++WVGP +GA + + ++L
Sbjct: 171 YYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY---NSLGGG 82
V GG++NPAVT L LAR + R + Q + + G A E N+LGGG
Sbjct: 106 VSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGG 165
Query: 83 ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHL 142
A+ + L E GT +L TV K A AP IG A+ + HL
Sbjct: 166 AS-------RTRGLFLEAFGTAILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHL 213
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQ 192
I TG G+NPARSFG AV + + HWI+W+GP +GA A + Q
Sbjct: 214 ICIYYTGAGLNPARSFGPAVAARSFP--NYHWIYWLGPILGAFLAYSIWQ 261
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 73 KHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-------SATDPKRSARDSHV 125
K Y G G+++V N A+ E +GTF+ +++ F A + +
Sbjct: 28 KPAYARWGFGSDSVR---NHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQ 84
Query: 126 PVLAPLPIGFAVFMVHLATIPITGTGINPA 155
++ GF V + T ++G +NPA
Sbjct: 85 LIMISFGFGFGVMVGVFITYRVSGGNLNPA 114
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 9/173 (5%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GAN 84
+ G HINPAVT GL+ +K V Y++AQ LGA G + ++GG GA
Sbjct: 76 ISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGAT 135
Query: 85 TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAT 144
G + A+ AE++GTF+L+ T+ +R+ + A + IG V +
Sbjct: 136 APFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTL 190
Query: 145 IPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 194
I+G+ +NPAR+FG +I+ W+ + I+ +GP VGA+ AA +QY+
Sbjct: 191 GNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 57 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 116
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPK--RSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++HL
Sbjct: 117 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 175
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T T +NPARS A I+ A + W FW
Sbjct: 176 ISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++HL
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A ++HL
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLACTLIHL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GAN 84
+ G HINPAVT L+ + V Y+VAQ +GA G L A + ++GG GA
Sbjct: 77 ISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGAT 136
Query: 85 TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAT 144
G G A+ E IGTF+L+ + +R+ P A L IG V +
Sbjct: 137 APFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTI 191
Query: 145 IPITGTGINPARSFGAAVIYNND-----KAWDDHWIFWVGPFVGALAAAAYHQYILR 196
ITG+ +NPAR+FG Y D W I+ +GP VGA+AAA + Y+ +
Sbjct: 192 GNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPK--RSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++HL
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNCSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPK--RSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++HL
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNCSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN-SLGGGAN 84
+ GGH NPAV+ GL +A + V Y++AQ GAI + + LGG A+
Sbjct: 85 ISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFAS 144
Query: 85 T-----VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 139
GY+ SAL EII T + + +T + A AP+ IG A+ +
Sbjct: 145 NGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTL 198
Query: 140 VHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 188
+HL +IP+T T +NPARS G A ++ A W+FW+ P VG A A
Sbjct: 199 IHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPIVGGAAGA 246
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 84 NTVASGYNKGSALGAEIIGTFVLVY-----TVFSATDPKRSARDSHVPVLAPLPIGFAVF 138
N Y G L AE GTF LV+ VF+A P+ + V L G V
Sbjct: 21 NLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGV----ALAFGLTVL 76
Query: 139 MVHLATIPITGTGINPARSFGAAV 162
+ A I+G NPA S G V
Sbjct: 77 TMAYAVGGISGGHFNPAVSVGLTV 100
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPK--RSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++ L
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNFSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT 85
+ GGH NPAVT GL+ + V Y++AQ +G I L+ + +
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 86 VASGYNKGSALGAEIIGTFVLVYTVFSATDPK--RSARDSHVPV-LAPLPIGFAVFMVHL 142
++GY + S G ++ V V V SA A D P AP+ IG A+ ++ L
Sbjct: 120 ASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGL 178
Query: 143 ATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW 177
+IP+T +NPARS A I+ A + W FW
Sbjct: 179 ISIPVTNFSVNPARS-TAVAIFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHEYN--- 77
V G H+NPAVT L+L + + ++V+Q GA C LV F E
Sbjct: 62 VSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHI 121
Query: 78 --------SLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVL 128
L G +T + + N A E++ T +L+ + + TD L
Sbjct: 122 VRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---L 178
Query: 129 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW-------------- 174
APL IG + ++ + P+TGT +NPAR FG V AW W
Sbjct: 179 APLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYF 233
Query: 175 -IFWVGPFVGALAAA-AYHQYILR 196
+ GP VGA+ A AY + I R
Sbjct: 234 LVPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 41/204 (20%)
Query: 26 VVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHEYN--- 77
V G H+NPAVT L+L + + ++V+Q GA C LV F E
Sbjct: 62 VSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHI 121
Query: 78 --------SLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVL 128
L G +T + + N A E++ T +L+ + + TD L
Sbjct: 122 VRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---L 178
Query: 129 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW-------------- 174
APL IG + ++ + P+TG +NPAR FG V AW W
Sbjct: 179 APLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYF 233
Query: 175 -IFWVGPFVGALAAA-AYHQYILR 196
+ GP VGA+ A AY + I R
Sbjct: 234 LVPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 28 GGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGV----GLVKAFMKHEYNSLGGGA 83
G H+N AV+ GL K L + Y AQ LGA G GL F+ +
Sbjct: 66 GAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWE 125
Query: 84 NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLA 143
+ + A E+I T +L+ + D + H+ L+ + +G + + +
Sbjct: 126 TSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK-FHILKLSSV-VGLIILCIGIT 183
Query: 144 TIPITGTGINPARSFGAAVI----YNNDKAWDDHWIFW---VGPFVGALAAAAYHQYIL 195
TG +NP+R G+ + Y D D++ FW V P VG++ ++ ++
Sbjct: 184 FGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVI 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,231,029
Number of Sequences: 62578
Number of extensions: 244488
Number of successful extensions: 775
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 42
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)