Query 028176
Match_columns 212
No_of_seqs 126 out of 1243
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01262 maiA maleylacetoacet 100.0 1.6E-40 3.4E-45 245.6 23.0 207 3-210 1-210 (210)
2 KOG0868 Glutathione S-transfer 100.0 5.7E-41 1.2E-45 228.0 18.2 208 2-211 6-214 (217)
3 PRK09481 sspA stringent starva 100.0 1.8E-40 3.9E-45 245.1 19.8 197 1-210 10-208 (211)
4 PRK13972 GSH-dependent disulfi 100.0 3.1E-39 6.7E-44 239.3 18.1 199 1-205 1-206 (215)
5 PRK15113 glutathione S-transfe 100.0 8.6E-39 1.9E-43 236.6 18.3 200 1-205 5-209 (214)
6 PLN02473 glutathione S-transfe 100.0 2.7E-38 5.8E-43 234.2 20.7 201 2-204 3-211 (214)
7 PRK10542 glutathionine S-trans 100.0 3.4E-37 7.5E-42 226.2 17.8 196 2-206 1-199 (201)
8 PLN02395 glutathione S-transfe 100.0 4.5E-36 9.7E-41 222.5 21.1 201 2-205 3-211 (215)
9 COG0625 Gst Glutathione S-tran 100.0 1.1E-35 2.4E-40 219.7 21.0 194 2-199 1-199 (211)
10 PRK11752 putative S-transferas 100.0 1.2E-35 2.6E-40 225.6 21.3 199 1-205 44-259 (264)
11 PRK10357 putative glutathione 100.0 1.4E-35 3.1E-40 217.8 20.6 196 2-204 1-200 (202)
12 PTZ00057 glutathione s-transfe 100.0 6.8E-35 1.5E-39 214.3 19.2 190 1-206 4-201 (205)
13 KOG0406 Glutathione S-transfer 100.0 1.5E-34 3.2E-39 208.9 20.0 194 2-205 10-212 (231)
14 KOG1695 Glutathione S-transfer 100.0 2.4E-32 5.2E-37 196.3 17.2 198 2-207 4-203 (206)
15 KOG0867 Glutathione S-transfer 100.0 3E-32 6.5E-37 202.1 18.0 200 2-203 3-208 (226)
16 PLN02378 glutathione S-transfe 100.0 4.2E-32 9.2E-37 200.5 17.4 180 6-205 16-200 (213)
17 TIGR00862 O-ClC intracellular 100.0 1.6E-31 3.4E-36 197.9 20.1 181 8-205 17-221 (236)
18 PLN02817 glutathione dehydroge 100.0 1.9E-30 4.1E-35 196.2 19.2 177 7-204 70-251 (265)
19 PRK10387 glutaredoxin 2; Provi 100.0 6E-31 1.3E-35 194.4 15.0 186 2-199 1-208 (210)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 3.8E-28 8.2E-33 178.9 14.8 184 3-199 1-207 (209)
21 KOG4420 Uncharacterized conser 99.9 5E-26 1.1E-30 164.0 15.4 202 2-204 27-287 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 7.2E-24 1.6E-28 178.4 18.0 161 2-204 3-172 (722)
23 KOG1422 Intracellular Cl- chan 99.9 9.5E-22 2.1E-26 138.1 14.5 182 8-205 19-206 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.8 7E-21 1.5E-25 116.5 8.2 73 2-74 1-73 (73)
25 cd03048 GST_N_Ure2p_like GST_N 99.8 1.3E-20 2.8E-25 118.1 9.2 77 1-78 1-80 (81)
26 cd03045 GST_N_Delta_Epsilon GS 99.8 2.7E-20 5.8E-25 114.7 8.2 74 2-75 1-74 (74)
27 cd03041 GST_N_2GST_N GST_N fam 99.8 2.3E-20 4.9E-25 115.7 7.7 75 1-77 1-77 (77)
28 cd03050 GST_N_Theta GST_N fami 99.8 8.6E-20 1.9E-24 112.9 9.0 76 2-77 1-76 (76)
29 PF13417 GST_N_3: Glutathione 99.8 5.7E-20 1.2E-24 113.3 7.7 74 4-80 1-74 (75)
30 cd03053 GST_N_Phi GST_N family 99.8 1.3E-19 2.7E-24 112.2 8.7 75 2-76 2-76 (76)
31 cd03056 GST_N_4 GST_N family, 99.8 2.3E-19 4.9E-24 110.2 8.1 73 2-74 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 2.6E-19 5.6E-24 109.9 8.1 73 2-74 1-73 (73)
33 cd03046 GST_N_GTT1_like GST_N 99.8 3.9E-19 8.5E-24 110.0 8.8 76 2-78 1-76 (76)
34 cd03058 GST_N_Tau GST_N family 99.8 4.5E-19 9.8E-24 109.1 8.6 73 2-77 1-74 (74)
35 cd03057 GST_N_Beta GST_N famil 99.8 4.9E-19 1.1E-23 109.8 8.7 76 2-78 1-77 (77)
36 cd03059 GST_N_SspA GST_N famil 99.8 5.2E-19 1.1E-23 108.6 8.6 73 2-77 1-73 (73)
37 PF02798 GST_N: Glutathione S- 99.8 5.1E-19 1.1E-23 109.2 8.1 74 2-75 1-76 (76)
38 cd03051 GST_N_GTT2_like GST_N 99.8 4.5E-19 9.7E-24 109.2 7.8 73 2-74 1-74 (74)
39 cd03042 GST_N_Zeta GST_N famil 99.8 5.4E-19 1.2E-23 108.5 8.1 73 2-74 1-73 (73)
40 COG2999 GrxB Glutaredoxin 2 [P 99.8 3.1E-18 6.8E-23 117.2 11.9 185 2-198 1-207 (215)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 9.6E-19 2.1E-23 107.8 8.2 73 2-75 1-74 (75)
42 cd03076 GST_N_Pi GST_N family, 99.8 4.2E-19 9.1E-24 108.8 6.5 72 2-76 2-73 (73)
43 cd03061 GST_N_CLIC GST_N famil 99.8 3.6E-18 7.9E-23 107.4 8.4 70 8-80 20-89 (91)
44 cd03080 GST_N_Metaxin_like GST 99.8 4.3E-18 9.3E-23 104.9 7.9 68 1-78 1-75 (75)
45 cd03039 GST_N_Sigma_like GST_N 99.8 1.6E-18 3.6E-23 106.0 5.9 72 2-75 1-72 (72)
46 cd03191 GST_C_Zeta GST_C famil 99.8 3.8E-17 8.3E-22 110.2 12.8 118 88-206 2-121 (121)
47 cd03075 GST_N_Mu GST_N family, 99.8 4.8E-18 1E-22 106.3 7.6 75 3-77 2-82 (82)
48 cd03060 GST_N_Omega_like GST_N 99.7 1E-17 2.2E-22 102.1 8.0 68 3-73 2-70 (71)
49 cd03055 GST_N_Omega GST_N fami 99.7 9.2E-18 2E-22 106.8 7.9 71 1-74 18-89 (89)
50 cd03037 GST_N_GRX2 GST_N famil 99.7 1.1E-17 2.3E-22 102.1 7.2 70 2-75 1-71 (71)
51 cd03049 GST_N_3 GST_N family, 99.7 1.5E-17 3.4E-22 102.0 7.6 70 2-74 1-73 (73)
52 cd03038 GST_N_etherase_LigE GS 99.7 2.4E-17 5.1E-22 103.9 7.6 70 8-78 14-84 (84)
53 cd03077 GST_N_Alpha GST_N fami 99.7 3.3E-17 7E-22 101.9 7.9 71 2-78 2-77 (79)
54 KOG3029 Glutathione S-transfer 99.7 3E-16 6.5E-21 115.1 13.2 187 2-195 91-355 (370)
55 PF13409 GST_N_2: Glutathione 99.7 8.7E-17 1.9E-21 97.5 7.4 68 9-76 1-70 (70)
56 KOG4244 Failed axon connection 99.7 8.9E-16 1.9E-20 112.0 13.6 174 8-195 59-273 (281)
57 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.7E-16 3.6E-21 98.4 7.8 71 2-77 2-76 (77)
58 cd03188 GST_C_Beta GST_C famil 99.7 2.4E-16 5.2E-21 105.1 9.0 111 89-202 2-114 (114)
59 cd03208 GST_C_Alpha GST_C fami 99.7 5.6E-16 1.2E-20 106.5 10.5 118 89-209 3-120 (137)
60 cd03196 GST_C_5 GST_C family, 99.7 5E-16 1.1E-20 103.6 9.8 111 86-202 3-115 (115)
61 cd03043 GST_N_1 GST_N family, 99.7 3.1E-16 6.7E-21 95.9 7.8 68 6-74 6-73 (73)
62 cd03178 GST_C_Ure2p_like GST_C 99.7 7.9E-16 1.7E-20 102.5 10.1 110 89-202 1-112 (113)
63 cd03186 GST_C_SspA GST_N famil 99.7 1.7E-15 3.8E-20 99.9 10.9 104 88-201 2-106 (107)
64 cd03189 GST_C_GTT1_like GST_C 99.7 2.1E-15 4.6E-20 101.3 11.3 110 84-196 2-119 (119)
65 cd00570 GST_N_family Glutathio 99.6 1E-15 2.2E-20 92.8 7.7 71 2-74 1-71 (71)
66 cd03184 GST_C_Omega GST_C fami 99.6 2E-15 4.2E-20 102.3 9.4 107 89-205 2-114 (124)
67 cd03177 GST_C_Delta_Epsilon GS 99.6 1.3E-15 2.9E-20 102.2 8.1 113 89-206 2-114 (118)
68 cd03180 GST_C_2 GST_C family, 99.6 6.9E-15 1.5E-19 97.4 11.3 107 89-198 2-110 (110)
69 cd03181 GST_C_EFB1gamma GST_C 99.6 4.8E-15 1E-19 100.2 10.6 115 89-206 1-118 (123)
70 cd03187 GST_C_Phi GST_C family 99.6 8.1E-15 1.7E-19 98.3 10.9 111 89-202 2-118 (118)
71 cd03210 GST_C_Pi GST_C family, 99.6 5.8E-15 1.3E-19 100.2 10.3 110 89-205 3-113 (126)
72 cd03209 GST_C_Mu GST_C family, 99.6 8E-15 1.7E-19 98.8 10.7 109 89-206 2-111 (121)
73 cd03182 GST_C_GTT2_like GST_C 99.6 7.3E-15 1.6E-19 98.4 10.3 110 86-198 1-117 (117)
74 cd03185 GST_C_Tau GST_C family 99.6 9.5E-15 2.1E-19 99.2 10.4 109 88-205 2-116 (126)
75 cd03190 GST_C_ECM4_like GST_C 99.6 1.5E-14 3.3E-19 100.1 10.2 109 88-204 3-118 (142)
76 cd03054 GST_N_Metaxin GST_N fa 99.6 5.4E-15 1.2E-19 90.3 7.0 65 2-76 1-72 (72)
77 COG0435 ECM4 Predicted glutath 99.6 1.6E-14 3.5E-19 105.9 10.3 192 2-203 52-285 (324)
78 cd03183 GST_C_Theta GST_C fami 99.6 3.4E-14 7.4E-19 96.4 9.9 111 90-202 2-120 (126)
79 cd03195 GST_C_4 GST_C family, 99.6 1.8E-14 3.9E-19 96.0 8.2 111 88-204 2-113 (114)
80 cd03198 GST_C_CLIC GST_C famil 99.6 3.1E-14 6.8E-19 96.3 9.4 84 122-205 23-125 (134)
81 cd03200 GST_C_JTV1 GST_C famil 99.5 9.7E-14 2.1E-18 89.4 9.1 95 70-194 1-95 (96)
82 cd03207 GST_C_8 GST_C family, 99.5 3.7E-14 8.1E-19 92.8 6.6 76 125-204 27-102 (103)
83 cd03203 GST_C_Lambda GST_C fam 99.5 3.7E-13 8E-18 90.5 11.1 106 86-205 1-112 (120)
84 PF00043 GST_C: Glutathione S- 99.5 1.7E-13 3.8E-18 88.2 9.2 72 122-196 22-95 (95)
85 cd03206 GST_C_7 GST_C family, 99.5 2E-13 4.4E-18 88.8 8.4 99 94-198 2-100 (100)
86 KOG3027 Mitochondrial outer me 99.5 3E-12 6.6E-17 90.1 14.5 173 9-195 33-248 (257)
87 cd03194 GST_C_3 GST_C family, 99.5 3E-13 6.5E-18 90.0 7.8 74 126-203 39-113 (114)
88 cd03179 GST_C_1 GST_C family, 99.5 2.4E-13 5.2E-18 89.2 6.7 102 89-193 2-105 (105)
89 KOG2903 Predicted glutathione 99.5 6.5E-13 1.4E-17 96.7 9.4 194 2-203 38-287 (319)
90 cd03204 GST_C_GDAP1 GST_C fami 99.4 1.1E-12 2.5E-17 86.0 8.6 75 123-198 24-111 (111)
91 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.1E-12 2.5E-17 79.2 6.7 60 8-76 15-74 (74)
92 cd03201 GST_C_DHAR GST_C famil 99.4 4.4E-12 9.6E-17 85.2 10.0 78 127-205 29-111 (121)
93 PF14497 GST_C_3: Glutathione 99.4 7.5E-13 1.6E-17 85.9 6.0 69 123-194 30-99 (99)
94 PF13410 GST_C_2: Glutathione 99.4 4.7E-12 1E-16 76.5 8.2 65 124-191 2-69 (69)
95 cd03192 GST_C_Sigma_like GST_C 99.3 1E-11 2.3E-16 81.3 8.1 101 89-192 2-104 (104)
96 cd00299 GST_C_family Glutathio 99.3 6E-12 1.3E-16 81.5 6.9 96 94-192 2-100 (100)
97 KOG3028 Translocase of outer m 99.2 2.7E-09 5.8E-14 80.4 17.5 173 10-195 17-234 (313)
98 cd03202 GST_C_etherase_LigE GS 99.2 6.8E-11 1.5E-15 79.9 8.1 68 126-195 56-124 (124)
99 PF14834 GST_C_4: Glutathione 99.2 3.4E-10 7.3E-15 72.9 9.7 112 86-202 1-112 (117)
100 cd03205 GST_C_6 GST_C family, 99.1 3.7E-10 8E-15 73.1 8.0 92 96-192 4-98 (98)
101 cd03193 GST_C_Metaxin GST_C fa 99.1 4.4E-10 9.4E-15 71.2 7.8 63 128-193 19-88 (88)
102 TIGR02190 GlrX-dom Glutaredoxi 99.1 3.6E-10 7.9E-15 70.0 6.7 71 1-74 9-79 (79)
103 cd03078 GST_N_Metaxin1_like GS 99.1 4E-10 8.7E-15 68.5 6.6 58 9-76 15-72 (73)
104 PRK10638 glutaredoxin 3; Provi 99.1 5.4E-10 1.2E-14 70.0 6.6 70 2-73 4-73 (83)
105 cd03029 GRX_hybridPRX5 Glutare 99.0 3.4E-09 7.3E-14 64.5 7.2 71 1-74 2-72 (72)
106 cd03197 GST_C_mPGES2 GST_C fam 99.0 3E-09 6.5E-14 72.8 7.0 62 131-194 82-145 (149)
107 cd03212 GST_C_Metaxin1_3 GST_C 98.9 5.4E-09 1.2E-13 71.7 7.2 69 124-194 60-134 (137)
108 cd03211 GST_C_Metaxin2 GST_C f 98.9 3.8E-09 8.3E-14 71.4 5.9 67 125-193 54-126 (126)
109 TIGR02196 GlrX_YruB Glutaredox 98.9 5.8E-09 1.3E-13 63.5 6.2 71 1-73 1-73 (74)
110 cd03027 GRX_DEP Glutaredoxin ( 98.9 9.1E-09 2E-13 62.7 6.1 68 2-71 3-70 (73)
111 cd02976 NrdH NrdH-redoxin (Nrd 98.7 3.7E-08 7.9E-13 59.7 5.2 62 2-65 2-63 (73)
112 cd02066 GRX_family Glutaredoxi 98.7 6.7E-08 1.4E-12 58.3 6.1 69 2-72 2-70 (72)
113 PRK10329 glutaredoxin-like pro 98.6 1.1E-07 2.3E-12 59.0 5.6 61 1-64 2-62 (81)
114 cd03418 GRX_GRXb_1_3_like Glut 98.6 1.6E-07 3.4E-12 57.5 6.0 70 2-73 2-72 (75)
115 COG0695 GrxC Glutaredoxin and 98.6 1.8E-07 3.8E-12 57.9 6.0 71 1-71 2-72 (80)
116 TIGR02200 GlrX_actino Glutared 98.5 1.8E-07 3.9E-12 57.4 4.6 63 2-66 2-66 (77)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 3.7E-07 8.1E-12 56.4 5.9 71 2-74 1-71 (79)
118 PRK11200 grxA glutaredoxin 1; 98.4 1.2E-06 2.6E-11 55.0 6.9 75 2-78 3-84 (85)
119 TIGR02194 GlrX_NrdH Glutaredox 98.4 7.2E-07 1.6E-11 54.1 4.8 57 2-61 1-57 (72)
120 PF00462 Glutaredoxin: Glutare 98.4 3.8E-07 8.3E-12 53.2 3.4 60 2-63 1-60 (60)
121 TIGR02183 GRXA Glutaredoxin, G 98.3 3.2E-06 7E-11 53.1 6.9 75 2-78 2-83 (86)
122 cd03419 GRX_GRXh_1_2_like Glut 98.3 2.8E-06 6E-11 52.8 6.3 74 2-75 2-76 (82)
123 TIGR02189 GlrX-like_plant Glut 98.3 3.6E-06 7.7E-11 54.3 6.1 71 2-72 10-81 (99)
124 PF10568 Tom37: Outer mitochon 98.2 6.5E-06 1.4E-10 49.6 6.1 55 9-73 13-71 (72)
125 PHA03050 glutaredoxin; Provisi 98.2 8E-06 1.7E-10 53.5 6.4 70 2-71 15-88 (108)
126 TIGR02180 GRX_euk Glutaredoxin 98.0 2.1E-05 4.5E-10 49.0 6.1 74 2-75 1-77 (84)
127 TIGR00365 monothiol glutaredox 97.9 4.1E-05 8.8E-10 49.2 6.3 63 8-72 25-87 (97)
128 PF04399 Glutaredoxin2_C: Glut 97.9 0.00012 2.6E-09 49.5 7.8 67 127-198 58-124 (132)
129 cd03028 GRX_PICOT_like Glutare 97.8 9.1E-05 2E-09 46.9 6.3 63 8-72 21-83 (90)
130 cd03199 GST_C_GRX2 GST_C famil 97.8 6E-05 1.3E-09 50.5 5.6 66 128-198 60-125 (128)
131 PRK12759 bifunctional gluaredo 97.6 0.0019 4.2E-08 52.5 12.3 67 2-71 4-79 (410)
132 cd03032 ArsC_Spx Arsenate Redu 97.5 0.00016 3.4E-09 48.1 3.9 33 1-33 1-33 (115)
133 PRK01655 spxA transcriptional 97.4 0.00019 4E-09 48.8 3.9 33 1-33 1-33 (131)
134 cd03031 GRX_GRX_like Glutaredo 97.4 0.00064 1.4E-08 47.0 6.2 69 2-72 2-80 (147)
135 KOG1147 Glutamyl-tRNA syntheta 97.4 0.0001 2.2E-09 60.1 2.1 105 58-190 43-150 (712)
136 PRK13344 spxA transcriptional 97.3 0.00033 7.2E-09 47.6 3.9 33 1-33 1-33 (132)
137 PRK12559 transcriptional regul 97.2 0.00044 9.6E-09 46.9 3.8 33 1-33 1-33 (131)
138 cd02973 TRX_GRX_like Thioredox 97.1 0.0017 3.7E-08 38.4 5.4 57 2-64 3-64 (67)
139 PRK10853 putative reductase; P 97.1 0.00075 1.6E-08 44.9 3.9 33 1-33 1-33 (118)
140 PRK10824 glutaredoxin-4; Provi 97.1 0.0019 4.1E-08 42.7 5.7 63 8-72 28-90 (115)
141 COG1393 ArsC Arsenate reductas 97.1 0.00076 1.6E-08 44.8 3.7 33 1-33 2-34 (117)
142 cd03036 ArsC_like Arsenate Red 96.9 0.00098 2.1E-08 43.9 3.3 32 2-33 1-32 (111)
143 cd02977 ArsC_family Arsenate R 96.8 0.0017 3.7E-08 42.3 3.5 32 2-33 1-32 (105)
144 COG4545 Glutaredoxin-related p 96.6 0.009 1.9E-07 35.6 5.1 64 1-64 3-77 (85)
145 PRK10026 arsenate reductase; P 96.5 0.0033 7.1E-08 43.1 3.5 33 1-33 3-35 (141)
146 TIGR01617 arsC_related transcr 96.5 0.0038 8.2E-08 41.6 3.6 32 2-33 1-32 (117)
147 PTZ00062 glutaredoxin; Provisi 96.4 0.0092 2E-07 43.7 5.6 62 8-71 126-187 (204)
148 cd03033 ArsC_15kD Arsenate Red 96.3 0.0055 1.2E-07 40.5 3.6 32 2-33 2-33 (113)
149 cd03035 ArsC_Yffb Arsenate Red 96.3 0.0053 1.1E-07 40.0 3.5 32 2-33 1-32 (105)
150 KOG1752 Glutaredoxin and relat 96.3 0.026 5.7E-07 36.6 6.4 70 3-72 17-87 (104)
151 cd03030 GRX_SH3BGR Glutaredoxi 96.0 0.037 8E-07 35.1 6.0 68 2-71 2-79 (92)
152 TIGR01616 nitro_assoc nitrogen 95.9 0.012 2.6E-07 39.6 3.7 32 2-33 3-34 (126)
153 PHA02125 thioredoxin-like prot 95.6 0.043 9.3E-07 33.2 5.1 51 1-57 1-51 (75)
154 COG0278 Glutaredoxin-related p 95.6 0.049 1.1E-06 34.6 5.1 65 7-73 27-92 (105)
155 cd03034 ArsC_ArsC Arsenate Red 95.4 0.021 4.5E-07 37.7 3.4 32 2-33 1-32 (112)
156 TIGR00014 arsC arsenate reduct 95.4 0.022 4.8E-07 37.7 3.4 32 2-33 1-32 (114)
157 TIGR00412 redox_disulf_2 small 95.0 0.18 3.8E-06 30.6 6.5 54 2-63 3-60 (76)
158 TIGR00411 redox_disulf_1 small 95.0 0.12 2.5E-06 31.6 5.7 57 1-61 2-62 (82)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 94.7 0.13 2.9E-06 32.3 5.5 57 2-64 16-77 (89)
160 PF05768 DUF836: Glutaredoxin- 94.4 0.24 5.2E-06 30.4 6.1 54 2-60 2-57 (81)
161 PF11801 Tom37_C: Tom37 C-term 92.9 0.3 6.6E-06 34.7 5.1 39 133-171 113-153 (168)
162 PF13192 Thioredoxin_3: Thiore 92.4 0.84 1.8E-05 27.5 6.0 55 2-64 3-61 (76)
163 PF11287 DUF3088: Protein of u 92.3 0.47 1E-05 30.9 4.9 67 9-78 23-108 (112)
164 cd01659 TRX_superfamily Thiore 91.4 0.59 1.3E-05 25.9 4.5 53 2-57 1-58 (69)
165 PF03960 ArsC: ArsC family; I 89.7 0.36 7.9E-06 31.6 2.7 29 5-33 1-29 (110)
166 PF04908 SH3BGR: SH3-binding, 89.4 0.94 2E-05 29.1 4.3 68 2-71 3-85 (99)
167 KOG0911 Glutaredoxin-related p 85.5 1.9 4.1E-05 31.9 4.4 65 7-73 151-215 (227)
168 PF09635 MetRS-N: MetRS-N bind 85.0 4.5 9.7E-05 26.9 5.6 27 52-78 35-63 (122)
169 cd02949 TRX_NTR TRX domain, no 83.2 4.8 0.0001 25.3 5.3 58 2-63 17-80 (97)
170 cd02953 DsbDgamma DsbD gamma f 79.3 4.2 9.1E-05 25.9 4.0 55 2-57 15-77 (104)
171 cd02947 TRX_family TRX family; 77.5 13 0.00028 22.3 6.1 54 2-61 14-74 (93)
172 TIGR03143 AhpF_homolog putativ 75.0 8.5 0.00018 33.0 5.7 57 2-64 480-541 (555)
173 TIGR01295 PedC_BrcD bacterioci 73.5 24 0.00052 23.5 6.8 61 3-63 28-103 (122)
174 cd02989 Phd_like_TxnDC9 Phosdu 73.1 19 0.00041 23.5 5.9 58 3-64 27-89 (113)
175 cd02975 PfPDO_like_N Pyrococcu 70.1 16 0.00034 23.9 5.0 48 6-57 30-80 (113)
176 PRK15317 alkyl hydroperoxide r 69.6 5.1 0.00011 34.0 3.1 71 2-76 120-197 (517)
177 TIGR03140 AhpF alkyl hydropero 67.5 5.7 0.00012 33.7 3.0 71 2-76 121-198 (515)
178 TIGR02681 phage_pRha phage reg 62.6 8.2 0.00018 25.2 2.4 26 53-78 2-28 (108)
179 KOG1668 Elongation factor 1 be 62.0 10 0.00022 28.3 3.0 59 134-199 10-68 (231)
180 PTZ00051 thioredoxin; Provisio 61.8 36 0.00077 21.1 5.4 56 3-62 23-83 (98)
181 PF00085 Thioredoxin: Thioredo 58.9 41 0.00088 20.8 8.3 70 2-75 21-102 (103)
182 TIGR02187 GlrX_arch Glutaredox 58.2 36 0.00078 25.1 5.5 52 2-57 137-191 (215)
183 COG3019 Predicted metal-bindin 57.4 19 0.0004 24.7 3.4 70 2-77 28-104 (149)
184 PF10022 DUF2264: Uncharacteri 57.2 51 0.0011 26.7 6.5 139 53-195 98-239 (361)
185 cd04911 ACT_AKiii-YclM-BS_1 AC 53.6 16 0.00034 22.2 2.4 25 9-33 14-38 (76)
186 KOG2824 Glutaredoxin-related p 52.3 23 0.00049 27.3 3.5 58 12-71 149-210 (281)
187 PF04134 DUF393: Protein of un 52.2 41 0.0009 21.7 4.6 72 4-76 1-77 (114)
188 PHA02278 thioredoxin-like prot 51.8 62 0.0013 20.8 6.4 59 5-63 21-85 (103)
189 cd02984 TRX_PICOT TRX domain, 51.1 56 0.0012 20.0 6.1 58 2-63 18-81 (97)
190 PF04564 U-box: U-box domain; 48.3 57 0.0012 19.3 4.6 26 51-77 14-39 (73)
191 TIGR02187 GlrX_arch Glutaredox 44.4 97 0.0021 22.8 6.0 56 2-61 23-88 (215)
192 cd02956 ybbN ybbN protein fami 44.1 40 0.00087 20.7 3.4 56 3-62 17-78 (96)
193 cd02963 TRX_DnaJ TRX domain, D 42.1 93 0.002 20.0 5.8 56 3-62 29-91 (111)
194 PF09413 DUF2007: Domain of un 41.3 21 0.00045 20.7 1.6 31 3-33 2-32 (67)
195 cd02997 PDI_a_PDIR PDIa family 41.1 45 0.00098 20.7 3.4 57 3-61 22-86 (104)
196 KOG0079 GTP-binding protein H- 40.6 21 0.00046 24.9 1.7 32 180-211 94-126 (198)
197 cd02959 ERp19 Endoplasmic reti 37.1 1.2E+02 0.0026 19.8 5.5 58 3-64 24-91 (117)
198 cd02951 SoxW SoxW family; SoxW 37.0 1.2E+02 0.0026 19.8 5.3 17 2-18 18-34 (125)
199 cd02952 TRP14_like Human TRX-r 34.5 1.4E+02 0.003 19.8 6.0 58 8-65 38-105 (119)
200 PRK10996 thioredoxin 2; Provis 34.0 67 0.0015 21.8 3.5 58 2-63 56-119 (139)
201 PHA03075 glutaredoxin-like pro 32.9 74 0.0016 21.1 3.2 65 2-77 5-70 (123)
202 COG5494 Predicted thioredoxin/ 32.5 1.3E+02 0.0028 22.4 4.7 70 1-75 12-86 (265)
203 COG3150 Predicted esterase [Ge 31.4 72 0.0016 22.9 3.2 32 2-33 3-34 (191)
204 cd02955 SSP411 TRX domain, SSP 30.7 1.7E+02 0.0036 19.6 5.0 63 4-66 21-97 (124)
205 cd02962 TMX2 TMX2 family; comp 30.7 1.9E+02 0.0041 20.2 6.0 58 3-64 52-122 (152)
206 cd03003 PDI_a_ERdj5_N PDIa fam 30.2 64 0.0014 20.1 2.7 55 3-61 23-83 (101)
207 PF11732 Thoc2: Transcription- 29.9 1.2E+02 0.0025 18.6 3.5 59 129-193 16-76 (77)
208 cd02954 DIM1 Dim1 family; Dim1 29.8 1E+02 0.0022 20.4 3.6 55 5-63 21-81 (114)
209 PRK09381 trxA thioredoxin; Pro 29.0 1.5E+02 0.0033 18.6 5.9 57 3-63 26-88 (109)
210 PF01323 DSBA: DSBA-like thior 28.4 75 0.0016 22.5 3.1 34 2-35 2-40 (193)
211 cd02948 TRX_NDPK TRX domain, T 28.2 68 0.0015 20.2 2.6 56 3-63 22-84 (102)
212 PF09868 DUF2095: Uncharacteri 28.0 64 0.0014 21.4 2.3 62 14-77 26-91 (128)
213 cd06891 PX_Vps17p The phosphoi 27.7 45 0.00097 23.0 1.7 19 182-200 111-129 (140)
214 cd02957 Phd_like Phosducin (Ph 26.4 1E+02 0.0022 19.8 3.2 55 3-64 29-90 (113)
215 TIGR01068 thioredoxin thioredo 25.9 1.6E+02 0.0035 17.8 5.2 55 3-61 19-79 (101)
216 COG5515 Uncharacterized conser 25.4 55 0.0012 18.8 1.5 21 2-22 3-27 (70)
217 cd08200 catalase_peroxidase_2 23.3 2E+02 0.0044 22.6 4.6 40 132-171 73-112 (297)
218 PF04705 TSNR_N: Thiostrepton- 22.6 5.8 0.00013 25.3 -3.0 35 2-36 51-85 (115)
219 PRK09266 hypothetical protein; 22.3 77 0.0017 24.2 2.3 59 19-77 200-258 (266)
220 PTZ00443 Thioredoxin domain-co 21.3 3.6E+02 0.0078 20.2 7.5 57 3-63 57-119 (224)
221 TIGR01764 excise DNA binding d 21.0 1.4E+02 0.003 15.3 2.9 25 50-74 24-48 (49)
222 PF07511 DUF1525: Protein of u 20.9 1.1E+02 0.0025 20.2 2.5 25 50-74 81-106 (114)
223 PF00392 GntR: Bacterial regul 20.9 1.7E+02 0.0037 16.5 3.1 27 135-163 4-31 (64)
224 PF11823 DUF3343: Protein of u 20.6 1.2E+02 0.0026 17.9 2.5 30 4-33 5-34 (73)
225 PF09098 Dehyd-heme_bind: Quin 20.5 90 0.0019 22.1 2.1 24 59-85 47-72 (167)
226 cd03004 PDI_a_ERdj5_C PDIa fam 20.5 1E+02 0.0022 19.2 2.3 54 3-60 24-83 (104)
227 TIGR01126 pdi_dom protein disu 20.4 1.4E+02 0.003 18.3 2.9 56 2-61 17-80 (102)
228 COG2382 Fes Enterochelin ester 20.4 1.2E+02 0.0027 23.8 3.0 38 47-84 92-130 (299)
229 PRK15371 effector protein YopJ 20.3 4.4E+02 0.0094 20.8 6.4 63 128-193 23-87 (287)
230 cd02950 TxlA TRX-like protein 20.2 2.2E+02 0.0048 19.3 4.0 59 3-63 25-90 (142)
No 1
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=1.6e-40 Score=245.57 Aligned_cols=207 Identities=53% Similarity=0.901 Sum_probs=173.4
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEeccCCC-CCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCC
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~ 81 (212)
+||++..||+++++|++|+++||+|+.+.++... ++++.+++.++||.|++|+|++||.+++||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999999999998632 355678899999999999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhh--hCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 028176 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
|.|.+..+++++++|+.++...+.+............. ...+...+...+.+.+.|+.||++|+.++++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 99999999999999999887666543322222222111 1122334556677999999999999875567999999999
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCCCCCC
Q 028176 160 ADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPDAP 210 (212)
Q Consensus 160 aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 210 (212)
|||++++.+.+. ...+..++.+|+|++|+++|.++|++++++...+|++|
T Consensus 161 ADi~~~~~l~~~-~~~~~~~~~~p~l~~~~~~~~~rp~~~~~~~~~~~~~~ 210 (210)
T TIGR01262 161 ADLCLVPQVYNA-ERFGVDLTPYPTLRRIAAALAALPAFQRAHPENQPDTP 210 (210)
T ss_pred HHHHHHHHHHHH-HHcCCCcccchHHHHHHHHHhcCHHHHHhCcccCCCCC
Confidence 999999999887 66666678899999999999999999999999999887
No 2
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-41 Score=228.03 Aligned_cols=208 Identities=53% Similarity=0.913 Sum_probs=193.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCC-CCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
.+||.++.|.+++|||++|..+||+|+..++++-.+ .....+|...||+++||+|++||.+++||.||++||++.+|+.
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 379999999999999999999999999999998876 4566799999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
+|+|.++..|+.++++...+.+.+.+..+..+..+.+++..... ..++...+.++|..||+.|....+.|-+||++|+|
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 99999999999999999999999999988888888877654333 67888889999999999999888899999999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCCCCCCC
Q 028176 161 DLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPDAPS 211 (212)
Q Consensus 161 D~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~ 211 (212)
|+++.+.++.. .++..++..||.+.+..+.....|+|+.+.++++||+|.
T Consensus 165 Dl~L~pqv~nA-~rf~vdl~PYPti~ri~e~l~elpaFq~ahP~nQPD~P~ 214 (217)
T KOG0868|consen 165 DLCLPPQVYNA-NRFHVDLTPYPTITRINEELAELPAFQAAHPDNQPDTPP 214 (217)
T ss_pred hhccchhhhhh-hhccccCCcCchHHHHHHHHHhCHHHHhcCCCCCCCCCC
Confidence 99999999999 999999999999999999999999999999999999995
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.8e-40 Score=245.06 Aligned_cols=197 Identities=25% Similarity=0.386 Sum_probs=166.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCC
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
|||||++..||+|++|+++|+++|++|+.+.++.. ++.++|.++||.|+||+|+++|.+++||.+|++||++++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999863 467899999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|.|.++.+++.++.|..++.+.+..... ... ...+...+...+.+...|..+|++|++ ++|++|+++|+|
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~A 157 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMN----KIV---NGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLV 157 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHh---cCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHH
Confidence 89999999999999998876654322211 111 122344566777889999999999976 799999999999
Q ss_pred HHhhHHHHHHHHHhcCCCC--CCcchHHHHHHHHhCChhhhhhCCCCCCCCC
Q 028176 161 DLYLAPQLYAAVNRFNLDM--TQFPLLLRLHEAYSKLPAFQNAAPEKQPDAP 210 (212)
Q Consensus 161 D~~l~~~l~~~~~~~~~~~--~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 210 (212)
|+++++.+.++ ...+..+ ..+|+|++|++++.++|++++++....++.+
T Consensus 158 D~~l~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~~ 208 (211)
T PRK09481 158 DCYLAPLLWRL-PVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMR 208 (211)
T ss_pred HHHHHHHHHHH-HhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHHh
Confidence 99999999877 5556554 5799999999999999999999887655443
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-39 Score=239.28 Aligned_cols=199 Identities=25% Similarity=0.339 Sum_probs=161.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEec-----CC--eeeehHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-----GD--FVVSDSFAILMYL 73 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-----~g--~~i~es~~I~~yl 73 (212)
|||||+.. ++++++|+++|+++||+|+.+.+++..++++.++|.++||.|+||+|++ +| .+|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 89999875 8999999999999999999999998877788899999999999999995 45 4799999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 028176 74 EEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 153 (212)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 153 (212)
+++++ .+.|.++.+++++++|+.+..+.+.+.+..............+...+...+++.+.|..||++|+. ++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 99986 477888999999999999988777654321100000011112344455667788999999999986 68999
Q ss_pred cCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 154 GDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 154 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
|+++|+|||++++.+... ...+..++.+|+|.+|++++.++|++++++...
T Consensus 156 Gd~~t~ADi~l~~~~~~~-~~~~~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 156 GENYSIADIACWPWVNAW-TRQRIDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCCCCHHHHHHHHHHHHH-hhcCCcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 999999999999887555 334555788999999999999999998877654
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=8.6e-39 Score=236.61 Aligned_cols=200 Identities=26% Similarity=0.272 Sum_probs=163.8
Q ss_pred CeeecccC--CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCC
Q 028176 1 MLKLFSYW--RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 1 m~~L~~~~--~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~ 78 (212)
||+||+.+ .|++|++|+++|+++||+|+.+.+++..++++.+++.+.||.|+||+|++||.+|+||.+|++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 79999975 6999999999999999999999999988888889999999999999999999999999999999999998
Q ss_pred CCC---CCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 028176 79 QPP---LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 79 ~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
+.. ++|.++.+++++++|+.++...+.+................+...+...+++.+.|..+|++|+.. ++|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~ 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGE 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCC
Confidence 765 999999999999999998876554322111000010111123334556677899999999999852 4799996
Q ss_pred CchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 156 EVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 156 ~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+|+||+++++.+.++ ...+..+. |+|.+|++++.++|++++++++.
T Consensus 164 -~TlADi~l~~~l~~~-~~~~~~~~--p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 164 -WCIADTDLALMLNRL-VLHGDEVP--ERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred -ccHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999999999887 55555443 99999999999999999998765
No 6
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.7e-38 Score=234.25 Aligned_cols=201 Identities=28% Similarity=0.320 Sum_probs=167.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCC-
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP- 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~- 80 (212)
||||++..|+++++|+++|+++|++|+.+.++...++++.+++.++||.|+||+|+++|.+|+||.+|++||++.+++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 7999999999999999999999999999999988888888999999999999999999999999999999999999753
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHH-Hhh---hhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 028176 81 -PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-YIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 81 -~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
+|+|.++.+++++++|+.+..+.+.+........ ... .........+....++.+.|+.||++|+. ++|++|+
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 160 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLGGD 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 5899999999999999998887776543222211 111 11112344566778899999999999986 6899999
Q ss_pred CchHHHHhhHHHHHHHHHhcCC--CCCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 156 EVFLADLYLAPQLYAAVNRFNL--DMTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 156 ~~t~aD~~l~~~l~~~~~~~~~--~~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
++|+||+++++.+.+....... .++.+|+|.+|++++.++|++++++..
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999876322221 147899999999999999999998764
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=3.4e-37 Score=226.23 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=162.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCC-CCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQ 79 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~ 79 (212)
|+|||...| ++++++++|+++||+|+.+.+++..++ .+.+++.++||.|+||+|+ +||.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 689998755 799999999999999999999987654 4568899999999999998 6889999999999999999997
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCch
Q 028176 80 PPLL-PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVF 158 (212)
Q Consensus 80 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 158 (212)
+.+. |.++.+++++++|+.++.+.+.+.+... ... ...+.......+++.+.|+.+|++|+. ++|++|+++|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s 152 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPL----FRP-DTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRFT 152 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhc----cCC-CChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCCc
Confidence 7766 5678899999999988876655432211 111 112333355677889999999999986 6899999999
Q ss_pred HHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 159 LADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 159 ~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
+||+++++.+.+. ...+..+..+|+|.+|++++.++|++++++.++.
T Consensus 153 ~ADi~l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~~~~~ 199 (201)
T PRK10542 153 IADAYLFTVLRWA-YAVKLNLEGLEHIAAYMQRVAERPAVAAALKAEG 199 (201)
T ss_pred HHhHHHHHHHHHh-hccCCCcccchHHHHHHHHHHcCHHHHHHHHHcc
Confidence 9999999999888 5666667889999999999999999999987653
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=4.5e-36 Score=222.52 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=163.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCC--
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~-- 79 (212)
+|||+. .+++++|++++|+++|++|+.+.+++..++++.+++.+.||.|+||+|+++|.+++||.+|++||+++++.
T Consensus 3 ~~ly~~-~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGP-AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcC-CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 799985 44579999999999999999999998877788899999999999999999999999999999999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHH-Hhhh---hhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 028176 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-YIEE---KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
.+|+|.++.+++++++|+.+.+..+.+........ .+.. ....++..+...+++.+.|+.||++|+. ++|++|+
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 159 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAGD 159 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccCC
Confidence 35999999999999999998887765543222211 1111 1112344556778899999999999986 6899999
Q ss_pred CchHHHHhhHHHHHHHHHhcC--CCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 156 EVFLADLYLAPQLYAAVNRFN--LDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 156 ~~t~aD~~l~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
++|+||+++++.+.+.....+ ..+..+|+|.+|++++.++|++++++.+.
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred CcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999999998877622222 23578999999999999999999998765
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=219.73 Aligned_cols=194 Identities=38% Similarity=0.545 Sum_probs=167.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCC-eeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD-FVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g-~~i~es~~I~~yl~~~~~~~ 80 (212)
|+||+...||++.+|++++.++|++|+.+.++... +.+.++|..+||.|+||+|++++ .+++||.+|++||++++|..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999987 77889999999999999999554 48999999999999999976
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhccccchhhHHHHHHhhhhhC-ccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 028176 81 PLLPSDLK---RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG-ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDE 156 (212)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 156 (212)
+|.|.++. +++.+..|+.+....+.+.+............. .++..+...+.+.+.|..+|+.|+. ++|++|++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~ 157 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGDR 157 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCC
Confidence 69998874 888888999998888877666554443111111 3456677888899999999999998 79999999
Q ss_pred chHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhh
Q 028176 157 VFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 157 ~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 199 (212)
+|+||+++++.+.++ ...+..++.+|++.+|++++.++|+++
T Consensus 158 ~tiAD~~~~~~~~~~-~~~~~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 158 FTIADIALAPLLWRL-ALLGEELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCHHHHHHHHHHHHh-hhcCcccccChHHHHHHHHHHcCCchh
Confidence 999999999999987 666766688999999999999999954
No 10
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=225.61 Aligned_cols=199 Identities=26% Similarity=0.360 Sum_probs=158.8
Q ss_pred CeeecccCCCchhHHHHHHHHHc------CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC----CeeeehHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAIL 70 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~----g~~i~es~~I~ 70 (212)
|||||+. .||++++|+++|+++ |++|+.+.+++..++++.++|.++||.|+||+|+++ +.+|+||.+|+
T Consensus 44 ~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 6999986 599999999999997 999999999988877888999999999999999953 36899999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhh-hhhCccHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028176 71 MYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIE-EKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (212)
Q Consensus 71 ~yl~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (212)
+||++.++ +|.|.++.+++.+++|+.+..... ......+..... .....+...+...+++.+.|+.||++|+. +
T Consensus 123 ~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~--~ 197 (264)
T PRK11752 123 LYLAEKFG--AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE--H 197 (264)
T ss_pred HHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 99999997 499999999999999998876543 211111111111 11112234455667788999999999986 6
Q ss_pred CccccCCchHHHHhhHHHHHHHHHh--c----CCCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 150 KYATGDEVFLADLYLAPQLYAAVNR--F----NLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 150 ~~l~G~~~t~aD~~l~~~l~~~~~~--~----~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+|++|+++|+|||++++.+.++... . ...++.+|+|.+|+++|.++|++++++..+
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 8999999999999999988766221 1 123578999999999999999999998765
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=217.79 Aligned_cols=196 Identities=23% Similarity=0.256 Sum_probs=157.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
||||++..||++++||++|+++|++|+.+.++...+ ..++.+.||.|++|+|+ ++|.+++||.+|++||+++++++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999998886543 35666789999999998 78899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|+|.++.+++++++|..+..+.+..................+...+...+++.+.|+.||++|.. ++ ++|+++|+|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~A 154 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNLA 154 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCHH
Confidence 799999999999999988776655443322221111111112334456677899999999999986 56 999999999
Q ss_pred HHhhHHHHHHHHHhcC--CC-CCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 161 DLYLAPQLYAAVNRFN--LD-MTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 161 D~~l~~~l~~~~~~~~--~~-~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
|+++++.+.++ .... .. ...+|+|.+|++++.+||+++++.+.
T Consensus 155 Di~l~~~l~~~-~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 155 TIAIACAVGYL-NFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHHH-HhcccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99999999877 3322 12 36799999999999999999998764
No 12
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=6.8e-35 Score=214.35 Aligned_cols=190 Identities=21% Similarity=0.269 Sum_probs=146.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhh--------hhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL--------KINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
+++|||++.++++++||++|+++|++|+.+.++. .. +++. +.||+|+||+|++||.+++||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~----~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE----NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc----cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 3799999999999999999999999999987642 11 2222 479999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 028176 73 LEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYA 152 (212)
Q Consensus 73 l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l 152 (212)
|+++++ +.+.+..+++.++.+...+.+........ ... .+...+...+.+.+.|..||++|+.++++|+
T Consensus 79 La~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l 147 (205)
T PTZ00057 79 LSKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNT---NLF-----KQNETTFLNEELPKWSGYFENILKKNHCNYF 147 (205)
T ss_pred HHHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhh---HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 999997 45666655555554443332222111110 011 1122345667889999999999987556899
Q ss_pred ccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 153 TGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 153 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
+|+++|+||+++++.+.++....+..++.+|+|.+|++++.++|++++++.++.
T Consensus 148 ~Gd~~T~AD~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 148 VGDNLTYADLAVFNLYDDIETKYPNSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred eCCcccHHHHHHHHHHHHHHHhChhhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 999999999999999888733345567899999999999999999999999885
No 13
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=208.87 Aligned_cols=194 Identities=26% Similarity=0.419 Sum_probs=164.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhC-CCCCcCeEecCCeeeehHHHHHHHHHHhCC-C
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~~vP~l~~~g~~i~es~~I~~yl~~~~~-~ 79 (212)
++||++..|||++|++++|+++||+|+.+..++.+ +++++.+.| +.++||||+.+|.+|+||..|++||++.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 68999999999999999999999999999999864 789999999 679999999999999999999999999999 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 028176 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
++++|+|+.+|++.+-|.+++++.+......... ...++..+...+.+...|..||+.|.. +++|+.|+++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~------~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA------AKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGF 159 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh------hcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCH
Confidence 8999999999999999999999765443221111 113455677778899999999999993 489999999999
Q ss_pred HHHhhHHHHHHHH---HhcC---CC-CCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 160 ADLYLAPQLYAAV---NRFN---LD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 160 aD~~l~~~l~~~~---~~~~---~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+|+++++.+.+.. ...+ +. .+++|.|.+|.++|.++|++++++++.
T Consensus 160 vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 160 VDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred hhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCH
Confidence 9999997775552 2222 22 478999999999999999999998764
No 14
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=196.31 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=162.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~ 81 (212)
+||+|++.++++..+|++++..|++|+++++...+. ....+...|+|++|+|..||..+.+|.||++||+++++
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 699999999999999999999999999999985432 23445568999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHH-HHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 028176 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDI-WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
+.|.++.|.+.++.+.+.+.+.....+...+....... .+...+ .......+.+..+++.|..++++|++|+++|+|
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~--~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGK--SEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhcc--chhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 99999999999999999888866553322222111111 122222 566677889999999999888899999999999
Q ss_pred HHhhHHHHHHHHHhcCCC-CCCcchHHHHHHHHhCChhhhhhCCCCCC
Q 028176 161 DLYLAPQLYAAVNRFNLD-MTQFPLLLRLHEAYSKLPAFQNAAPEKQP 207 (212)
Q Consensus 161 D~~l~~~l~~~~~~~~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 207 (212)
|+.++..+..+......+ +..+|.|.++.+++.++|.+++++.++..
T Consensus 156 Dl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 156 DLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred HHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 999999999983323333 57889999999999999999999999843
No 15
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=202.12 Aligned_cols=200 Identities=37% Similarity=0.491 Sum_probs=173.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCC-CC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~-~~ 80 (212)
|+||++..|+.++++.++++++|++|+.+.++...++++.++|.++||.++||+|+++|..++||.||+.||.+.|. ..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999996 33
Q ss_pred C-CCCCCHHHHHHHHHHHHHHhccccchh--hHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCc
Q 028176 81 P-LLPSDLKRKAINYQAANIVSSSIQPLQ--NLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 157 (212)
Q Consensus 81 ~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 157 (212)
+ |+|.+..+++.+++|+.+.++.+.+.. ...+........-.....+....++.+.++.+|..|.+ +.|+.|+++
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~~~ 160 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGDQL 160 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCCcc
Confidence 4 999999999999999999988887763 33333322222225566778888999999999999998 799999999
Q ss_pred hHHHHhhHHHHHHHH-Hhc-CCCCCCcchHHHHHHHHhCChhhhhhCC
Q 028176 158 FLADLYLAPQLYAAV-NRF-NLDMTQFPLLLRLHEAYSKLPAFQNAAP 203 (212)
Q Consensus 158 t~aD~~l~~~l~~~~-~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 203 (212)
|+||+.+.+.+..+. ... ......+|++.+|++++.++|++++...
T Consensus 161 tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred cHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 999999999998873 222 3346899999999999999999888653
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=4.2e-32 Score=200.52 Aligned_cols=180 Identities=29% Similarity=0.344 Sum_probs=138.6
Q ss_pred ccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCCCCCC
Q 028176 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPS 85 (212)
Q Consensus 6 ~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~p~ 85 (212)
++..||+|++|+++|+++|++|+.+.+++.. +.++|.++||.|+||+|+++|.+|+||.+|++||++++++..+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~-- 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK-- 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--
Confidence 3567999999999999999999999999864 56789999999999999998899999999999999999875553
Q ss_pred CHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhH
Q 028176 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (212)
++.+++.+...+.. .+ ..+.... . ..+...+.+.+.|+.+|++|+.++++|++|+++|+||++++
T Consensus 91 ~~~~~a~i~~~~~~-------~~----~~~~~~~--~--~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~ 155 (213)
T PLN02378 91 TPAEFASVGSNIFG-------TF----GTFLKSK--D--SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLA 155 (213)
T ss_pred CHHHHHHHHHHHHH-------HH----HHHHhcC--C--hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHH
Confidence 46666665543211 11 1111111 0 11223356778899999999854479999999999999999
Q ss_pred HHHHHHHHhc----CCC-CCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 166 PQLYAAVNRF----NLD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 166 ~~l~~~~~~~----~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+.+.++.... ... .+.+|+|++|+++|.++|++++++++.
T Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~ 200 (213)
T PLN02378 156 PKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEE 200 (213)
T ss_pred HHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCCh
Confidence 9987752111 122 378999999999999999999988764
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1.6e-31 Score=197.88 Aligned_cols=181 Identities=24% Similarity=0.285 Sum_probs=141.0
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCC---CCCCC
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ---PPLLP 84 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~---~~l~p 84 (212)
..||+|++|+++|+++|++|+.+.+++.. +.++|.++||.|+||||+++|.+++||.+|++||+++++. +.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 46999999999999999999999999874 4789999999999999999999999999999999999974 33555
Q ss_pred CCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhc----------------cC
Q 028176 85 SDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD----------------YA 148 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~ 148 (212)
.++..++....+...+ . .+... ..+...+...+.+.+.|+.||+.|.+ .+
T Consensus 94 ~~~~~~~~~~~l~~~~--------~----~~~~~--~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~ 159 (236)
T TIGR00862 94 KHPESNTAGLDIFAKF--------S----AYIKN--SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSR 159 (236)
T ss_pred CCHHHHHHHHHHHHHH--------H----HHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 5554444321111111 0 11111 12233345566789999999999974 13
Q ss_pred CCccccCCchHHHHhhHHHHHHHHH----hcCCC-CCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 149 GKYATGDEVFLADLYLAPQLYAAVN----RFNLD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 149 ~~~l~G~~~t~aD~~l~~~l~~~~~----~~~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
++|+.|+++|+|||++++.+.++.. ..+++ .+.+|+|++|++++.++|+|+++++..
T Consensus 160 ~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~ 221 (236)
T TIGR00862 160 RKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDD 221 (236)
T ss_pred CCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCCh
Confidence 7999999999999999999988832 22566 589999999999999999999998764
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.9e-30 Score=196.17 Aligned_cols=177 Identities=26% Similarity=0.358 Sum_probs=138.2
Q ss_pred cCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCCCCCCC
Q 028176 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~p~~ 86 (212)
...||+|++++++|+++|++|+.+.+++. .+.++|.++||.|+||+|+++|.+++||.+|++||++++++..+. +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--T 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--C
Confidence 34599999999999999999999999875 357889999999999999988889999999999999999976664 5
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHH
Q 028176 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (212)
+.+++.++.++... + ..+.... ... ....+++.+.|+.||++|+++ ++|++|+++|+||+++++
T Consensus 145 ~~era~i~~~l~~~---~--------~~~~~~~--~~~--~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p 208 (265)
T PLN02817 145 PPEKASVGSKIFST---F--------IGFLKSK--DPG--DGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGP 208 (265)
T ss_pred HHHHHHHHHHHHHH---H--------HHHhccC--Ccc--hHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHH
Confidence 67788776643211 1 1111111 111 122356778899999999863 689999999999999999
Q ss_pred HHHHHHHhc----CCC-CCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 167 QLYAAVNRF----NLD-MTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 167 ~l~~~~~~~----~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
.+.++.... +.+ .+.+|+|.+|++++.++|+|+++.+.
T Consensus 209 ~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~ 251 (265)
T PLN02817 209 KLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRAL 251 (265)
T ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCC
Confidence 987763221 223 37899999999999999999998774
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=6e-31 Score=194.38 Aligned_cols=186 Identities=20% Similarity=0.213 Sum_probs=137.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
||||++..||+|++||++|+++||+|+.+.++... ... ..+.||.++||+|+ +||.+++||.+|++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 79999999999999999999999999998876332 221 25688999999995 88999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHH-------------Hhhh----hhCc-c---HHHHHHHHHHHHHHHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------YIEE----KAGA-D---ERDIWAKTHIGKGFAA 139 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~-~---~~~~~~~~~~~~~l~~ 139 (212)
.+.+ .+++.+++|+++....+...+...+.. ++.. ..+. + ...+...+++++.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 5532 256778888877654443222111100 0000 0000 0 0113456788999999
Q ss_pred HHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhh
Q 028176 140 LEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 199 (212)
+|++|+. +|++|+++|+||+++++.+.++ ...+. ...+|+|.+|++||.++|.+.
T Consensus 154 le~~L~~---~~l~G~~~s~ADi~l~~~l~~~-~~~~~-~~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 154 LDPLIVK---PNAVNGELSTDDIHLFPILRNL-TLVKG-IEWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHhcC---ccccCCCCCHHHHHHHHHHhcc-eeecC-CCCCHHHHHHHHHHHHHhCCC
Confidence 9999963 8999999999999999999988 44322 234699999999999998763
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=3.8e-28 Score=178.88 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=131.1
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCCC
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~~ 81 (212)
|||++..||+|++||++|+++|++|+.+.+... +. ....+.||.|++|+|+ +||.+++||.+|++||+++|+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 699999999999999999999999998776532 22 2347899999999998 889999999999999999998644
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhhHHHH-------------HHhhhhh--C-cc-----HHHHHHHHHHHHHHHHH
Q 028176 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-------------KYIEEKA--G-AD-----ERDIWAKTHIGKGFAAL 140 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~-~~-----~~~~~~~~~~~~~l~~l 140 (212)
+.|. +++.+++|+.++...+...+...+. ....... . .. ...+...+.+.+.|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 3456667766544433222111000 0000000 0 00 00134557788999999
Q ss_pred HHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcc-hHHHHHHHHhCChhhh
Q 028176 141 EKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFP-LLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 141 e~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p-~l~~w~~~~~~~~~~~ 199 (212)
|++|+. ++|+.| ++|+||+++++.+.++ ...+. . .+| +|.+|++||++++++.
T Consensus 154 e~~L~~--~~~l~g-~~TiADi~l~~~l~~~-~~~~~-~-~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 154 DKLIDG--PNAVNG-ELSEDDILVFPLLRNL-TLVAG-I-NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHHHhC--ccccCC-CCCHHHHHHHHHhcCe-eeecC-C-CCChHHHHHHHHHHHHhCCC
Confidence 999987 789855 6999999999999887 43322 1 356 9999999999988763
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.94 E-value=5e-26 Score=164.04 Aligned_cols=202 Identities=24% Similarity=0.291 Sum_probs=148.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCC-CC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~-~~ 80 (212)
+.||+++.|--++|||++++++||+|+...|++..+++..++|..+||.|.|||++++..+|+++.-|++|+++.+- ++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999885 45
Q ss_pred CCCCCC-HHHHHHHHHHHHHHhc--------------c-----ccchhhHH---HHH-------Hhhhh-----------
Q 028176 81 PLLPSD-LKRKAINYQAANIVSS--------------S-----IQPLQNLA---VVK-------YIEEK----------- 119 (212)
Q Consensus 81 ~l~p~~-~~~~~~~~~~~~~~~~--------------~-----~~~~~~~~---~~~-------~~~~~----------- 119 (212)
.|.|.. ..+..++......... . ..|..... ..+ .....
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 677752 1111222111111100 0 00111100 000 00000
Q ss_pred ----h------CccHHHHHHHHHHHHHHHHHHHHHhcc--CCCccccCCchHHHHhhHHHHHHHHHhcCCC---C--CCc
Q 028176 120 ----A------GADERDIWAKTHIGKGFAALEKLLKDY--AGKYATGDEVFLADLYLAPQLYAAVNRFNLD---M--TQF 182 (212)
Q Consensus 120 ----~------~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~---~--~~~ 182 (212)
. .+....+.+...+...|+..|.-|..+ -..||+|+.+|+||+.+.+.|+++ ...|++ + ...
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL-~~Lg~e~~yw~~gsr 265 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRL-KFLGLEKKYWEDGSR 265 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHH-HHcccHHHhcccCCC
Confidence 0 011223445566677788888888763 147999999999999999999999 666654 2 478
Q ss_pred chHHHHHHHHhCChhhhhhCCC
Q 028176 183 PLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 183 p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
|+|..|++|+++|+++++++++
T Consensus 266 pnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 266 PNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred ccHHHHHHHHHhhhHHHHhhhh
Confidence 9999999999999999999865
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=7.2e-24 Score=178.44 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=130.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
++||+.+.|+ +.++.++|++.|++|+.+. .+|.|++|+|+ +||.+++||.+|++||++.+++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 6899876654 7789999999999999754 15799999999 68899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|+|.++.+++++++|+.+...... ...+...|+.||++|+. ++||+|+++|+|
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~------------------------~~~l~~~L~~LE~~L~~--rtYLvGd~lTLA 120 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS------------------------GSEFENACEYVDGYLAS--RTFLVGYSLTIA 120 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc------------------------HHHHHHHHHHHHHHhcc--CCeecCCCCCHH
Confidence 8999999999999999998754210 01356678999999987 789999999999
Q ss_pred HHhhHHHHHHHH-HhcCC-CCCCcchHHHHHHHHhCChh------hhhhCCC
Q 028176 161 DLYLAPQLYAAV-NRFNL-DMTQFPLLLRLHEAYSKLPA------FQNAAPE 204 (212)
Q Consensus 161 D~~l~~~l~~~~-~~~~~-~~~~~p~l~~w~~~~~~~~~------~~~~~~~ 204 (212)
|+++++.+.... ..... ....+|+|.+|++++.++|+ ++++...
T Consensus 121 DIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs~~~~~~~~a~~~~ 172 (722)
T PLN02907 121 DIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGK 172 (722)
T ss_pred HHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 999999885541 11111 24789999999999999999 5555543
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.5e-22 Score=138.11 Aligned_cols=182 Identities=25% Similarity=0.296 Sum_probs=139.9
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCCCCCCCH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDL 87 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~p~~~ 87 (212)
..||+|+++.+.|+.+|++|.++.|++.. ++++|.+.+|.+++|+|..|+..++||..|.++|++.++.+.+.--++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~ 95 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAP 95 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCC
Confidence 46999999999999999999999999874 689999999999999999999999999999999999998644322112
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhc-cCCCccccCCchHHHHhhHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~l~~ 166 (212)
.|.+. ...+.+.. +..+.. ...++..+.....+.+.|..||++|+. +.++|+.|+++|.|||.+++
T Consensus 96 ~E~as------ag~diF~k-----F~~fi~--ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlP 162 (221)
T KOG1422|consen 96 PESAS------AGSDIFAK-----FSAFIK--KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLP 162 (221)
T ss_pred HHHHh------hHHHHHHH-----HHHHHh--CchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhch
Confidence 22221 12222211 111211 112334455666778888999999997 56899999999999999999
Q ss_pred HHHHHHHhcC----CC-CCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 167 QLYAAVNRFN----LD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 167 ~l~~~~~~~~----~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
-|+.+.-..+ ++ .+.++++++|+..+.+++++.+++++.
T Consensus 163 KL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d 206 (221)
T KOG1422|consen 163 KLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPAD 206 (221)
T ss_pred hHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchH
Confidence 9998832222 33 378999999999999999999988765
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.85 E-value=7e-21 Score=116.46 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=69.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
++||++..|++|+++|++|+++|++|+.+.++...++++.+++.++||.|++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999988777788899999999999999999999999999999985
No 25
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.84 E-value=1.3e-20 Score=118.10 Aligned_cols=77 Identities=47% Similarity=0.709 Sum_probs=71.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC---CeeeehHHHHHHHHHHhC
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG---DFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~---g~~i~es~~I~~yl~~~~ 77 (212)
|++||++.. |+|++++++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 899999875 9999999999999999999999987666778899999999999999965 889999999999999998
Q ss_pred C
Q 028176 78 P 78 (212)
Q Consensus 78 ~ 78 (212)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 26
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.83 E-value=2.7e-20 Score=114.67 Aligned_cols=74 Identities=45% Similarity=0.671 Sum_probs=69.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~ 75 (212)
|+||+++.||+|++++++|+++|++|+.+.+++..++.+.+++.+.||.|++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877777789999999999999999889999999999999974
No 27
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=2.3e-20 Score=115.67 Aligned_cols=75 Identities=28% Similarity=0.278 Sum_probs=66.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEec--CCeeeehHHHHHHHHHHhC
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD--GDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~i~es~~I~~yl~~~~ 77 (212)
|++||++..||+|++++++|+++||+|+.+.++ .++...+++.+.||.+++|+|++ +|..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 899999999999999999999999999998875 33344678999999999999995 4689999999999999874
No 28
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.82 E-value=8.6e-20 Score=112.93 Aligned_cols=76 Identities=49% Similarity=0.751 Sum_probs=70.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~ 77 (212)
++||++..|+++++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987776677899999999999999988999999999999999874
No 29
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=5.7e-20 Score=113.32 Aligned_cols=74 Identities=47% Similarity=0.785 Sum_probs=68.9
Q ss_pred ecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCC
Q 028176 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 4 L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
||++..||+|+|+|++|+++||+|+.+.++... +.+++.+.||.+++|+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998553 47899999999999999988999999999999999999864
No 30
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.81 E-value=1.3e-19 Score=112.22 Aligned_cols=75 Identities=48% Similarity=0.725 Sum_probs=69.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
|+||++..||+|+++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999999998766667789999999999999999899999999999999863
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=2.3e-19 Score=110.21 Aligned_cols=73 Identities=41% Similarity=0.666 Sum_probs=68.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
|+||+++.||+|++++++|+++|++|+.+.++...++++.+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 6899999999999999999999999999999987666788999999999999999988999999999999984
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.80 E-value=2.6e-19 Score=109.86 Aligned_cols=73 Identities=40% Similarity=0.513 Sum_probs=67.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
|+||++..|++++++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998876555677899999999999999999999999999999984
No 33
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.80 E-value=3.9e-19 Score=110.02 Aligned_cols=76 Identities=46% Similarity=0.710 Sum_probs=69.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~ 78 (212)
|+||++.. +++++++++|+++|++|+.+.++...+..+.+++.+.||.+++|+|+++|..++||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998875 68999999999999999999999766667789999999999999999999999999999999999875
No 34
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=4.5e-19 Score=109.09 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=66.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCC-CCcCeEecCCeeeehHHHHHHHHHHhC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~i~es~~I~~yl~~~~ 77 (212)
|+||++..||+|+++|++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988764 456888999996 999999988999999999999999864
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.80 E-value=4.9e-19 Score=109.83 Aligned_cols=76 Identities=41% Similarity=0.550 Sum_probs=69.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC-CeeeehHHHHHHHHHHhCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-g~~i~es~~I~~yl~~~~~ 78 (212)
|+||++..+ .++++|++|+++|++|+.+.++...++++.+++.+.||.+++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589998865 589999999999999999999987777788999999999999999955 8999999999999999875
No 36
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=5.2e-19 Score=108.58 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=67.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~ 77 (212)
|+||+...||+|++++++|+++|++|+.+.++.. ++.+++.+.||.|++|+++++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998854 456899999999999999988899999999999999874
No 37
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.79 E-value=5.1e-19 Score=109.17 Aligned_cols=74 Identities=50% Similarity=0.745 Sum_probs=67.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCC-CCcCeEecC-CeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDG-DFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~-g~~i~es~~I~~yl~~ 75 (212)
|+|+++..++++.++|++|+++|++|+.+.+++..++++.+++.+.||. |++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 6777778888999999999999999999999998888888999999999 999999987 9999999999999985
No 38
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.79 E-value=4.5e-19 Score=109.15 Aligned_cols=73 Identities=44% Similarity=0.626 Sum_probs=67.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~ 74 (212)
|+||+++.||+|+++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 68999999999999999999999999999999876666778899999999999999 68889999999999985
No 39
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.79 E-value=5.4e-19 Score=108.51 Aligned_cols=73 Identities=58% Similarity=0.955 Sum_probs=68.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
|+||++..|++++++|++|+++|++|+.+.++...+.++.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987766778899999999999999998999999999999985
No 40
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.1e-18 Score=117.18 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=129.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
||||-+..||||.|+|+++..+|||++.+...-++. +.-..+-...+||+|+ +||..+.||..|++|+++..++.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe----~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE----ETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcc----cChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 799999999999999999999999999988874432 2223344457899999 99999999999999999998764
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCcc---------------------HHHHHHHHHHHHHHHH
Q 028176 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGAD---------------------ERDIWAKTHIGKGFAA 139 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~ 139 (212)
-+.+ ..+..++.|+..+......+....+.+..-.++..+ ..-....+++...|+.
T Consensus 77 ~lt~---~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTG---KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhcc---CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 3332 234567777776666554433333221111111111 1223455677788888
Q ss_pred HHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhh
Q 028176 140 LEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 198 (212)
++..+.. .. -+.+.++.-|+.+|++|+.+....|..+. .++..|..+|++...+
T Consensus 154 l~~Li~~--~s-~~n~~l~~ddi~vFplLRnlt~v~gi~wp--s~v~dy~~~msektqV 207 (215)
T COG2999 154 LDKLIVG--PS-AVNGELSEDDILVFPLLRNLTLVAGIQWP--SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHHhcC--cc-hhccccchhhhhhhHHhccceecccCCCc--HHHHHHHHHHHHhhCc
Confidence 8888875 23 33445999999999999998445555443 5799999999886544
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.78 E-value=9.6e-19 Score=107.85 Aligned_cols=73 Identities=29% Similarity=0.422 Sum_probs=67.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEec-CCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~i~es~~I~~yl~~ 75 (212)
.|||++..||++++++++|+++|++|+.+.++...+ ++.+++.++||.+++|+|+. ||.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 379999999999999999999999999999997643 67889999999999999994 68899999999999986
No 42
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=4.2e-19 Score=108.80 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=65.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
|+|||+..|++++++|++|+++|++|+.+.++.. .+.+++.+.||.+++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 6899999999999999999999999999999852 33457889999999999999999999999999999763
No 43
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.76 E-value=3.6e-18 Score=107.39 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=64.4
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCC
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~ 80 (212)
..||||+++|++|+++||+|+.+.+++.+ ++++|.++||.|++|+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~---~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR---KPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 46999999999999999999999998764 57899999999999999999999999999999999998743
No 44
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.76 E-value=4.3e-18 Score=104.90 Aligned_cols=68 Identities=32% Similarity=0.395 Sum_probs=62.0
Q ss_pred CeeecccC-------CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHH
Q 028176 1 MLKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 1 m~~L~~~~-------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl 73 (212)
|++||++. .||+|++++++|+++|++|+.+.++. .+.+|.+++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 89999998 68999999999999999999988863 15789999999999999999999999999
Q ss_pred HHhCC
Q 028176 74 EEKYP 78 (212)
Q Consensus 74 ~~~~~ 78 (212)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.76 E-value=1.6e-18 Score=106.00 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=64.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~ 75 (212)
|+||++..|++|+++|++|+++|++|+.+.++.... ...++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 689999999999999999999999999999886432 334578899999999999989999999999999974
No 46
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.75 E-value=3.8e-17 Score=110.21 Aligned_cols=118 Identities=46% Similarity=0.798 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHhhhhhC--ccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (212)
.+++++++|+.++.+.+.+.+............. .+...+...+.+.+.|+.+|++|+.++++|++|+++|+||++++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 4789999999999988877543333332221111 12333445567899999999999853357999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 166 PQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 166 ~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
+.+.+. ...+.++..+|+|++|++++.++|+++++.+.++
T Consensus 82 ~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 121 (121)
T cd03191 82 PQVYNA-RRFGVDLSPYPTIARINEACLELPAFQAAHPDNQ 121 (121)
T ss_pred HHHHHH-HHhCCCcccCcHHHHHHHHHHhChhHHHhCcCcC
Confidence 999877 5566667889999999999999999999987653
No 47
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.75 E-value=4.8e-18 Score=106.30 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=64.2
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCC-Chhhhh-----hCCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQF-SPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~-----~~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
+|||+..++.|+++|++|+++|++|+.+.+++..++.. .+++.+ .+|+++||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 79999999999999999999999999999998765543 234432 239999999999999999999999999986
Q ss_pred C
Q 028176 77 Y 77 (212)
Q Consensus 77 ~ 77 (212)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 48
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.74 E-value=1e-17 Score=102.14 Aligned_cols=68 Identities=31% Similarity=0.520 Sum_probs=62.6
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEec-CCeeeehHHHHHHHH
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~i~es~~I~~yl 73 (212)
+||++..||+|++++++|+++|++|+.+.++... +.+++.+.||.+++|+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998753 4578999999999999995 599999999999996
No 49
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=9.2e-18 Score=106.80 Aligned_cols=71 Identities=34% Similarity=0.431 Sum_probs=64.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC-CeeeehHHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-g~~i~es~~I~~yl~ 74 (212)
||+||++..||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999999988643 45678999999999999965 899999999999985
No 50
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.73 E-value=1.1e-17 Score=102.07 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=60.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEec-CCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~i~es~~I~~yl~~ 75 (212)
|+||++..||+|+++|++|.++|++|+.+.++... .....+.+|.+++|+|++ ||..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999998887421 234457899999999995 48999999999999974
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.5e-17 Score=101.96 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=63.9
Q ss_pred eeecccCCCchhHHHHHHHHH--cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~ 74 (212)
|+||++..||+|+++|++|++ +|++|+.+.++.. .+.+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 689999999999999999999 8999999998843 4568899999999999998 68899999999999985
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.72 E-value=2.4e-17 Score=103.90 Aligned_cols=70 Identities=39% Similarity=0.518 Sum_probs=61.2
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC-CeeeehHHHHHHHHHHhCC
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-g~~i~es~~I~~yl~~~~~ 78 (212)
..||+|+++|++|+++|++|+.+.++.........++ +.||.+++|+|+++ |.+++||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5799999999999999999999999876554444455 78999999999977 8999999999999999875
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.3e-17 Score=101.85 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=61.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhh-----CCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-----NPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
++|||++.++++++++++|++.|++|+.+.++.. +++.+. .|.+++|+|++||.+++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 5899999999999999999999999999988742 222222 36899999999999999999999999999
Q ss_pred CC
Q 028176 77 YP 78 (212)
Q Consensus 77 ~~ 78 (212)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 86
No 54
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.71 E-value=3e-16 Score=115.09 Aligned_cols=187 Identities=19% Similarity=0.159 Sum_probs=117.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCC--
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~-- 79 (212)
+.||.+..||||.|||..|.++||+|++++|++- .+.++ +.+...+||.|..+|+.+.||.+|+.-|+.....
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV----~r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV----LRQEI-KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecch----hhhhc-cccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 5799999999999999999999999999999854 23332 3445789999997788899999999888442210
Q ss_pred ------CCCCCC-----------------------------CHHHHHHHHHHHHHHhccccchhhHHHH----------H
Q 028176 80 ------PPLLPS-----------------------------DLKRKAINYQAANIVSSSIQPLQNLAVV----------K 114 (212)
Q Consensus 80 ------~~l~p~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 114 (212)
-+++|. +...+..-+.|-.|+++-+-.+.+.-++ .
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 011220 1112223445555554432111110000 0
Q ss_pred H-----------------------------hhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhH
Q 028176 115 Y-----------------------------IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 115 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (212)
+ ..............++.+....+..-..|+.+ ++|+.|++|++||+.+|
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgkn-r~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKN-RPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCC-CCccCCCCCchhhhhhh
Confidence 0 00000011112224455555666666667654 89999999999999999
Q ss_pred HHHHHHHHhcC--CCCCCcchHHHHHHHHhCC
Q 028176 166 PQLYAAVNRFN--LDMTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 166 ~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~ 195 (212)
++|..+. ... .+.-...++..|+-+|++.
T Consensus 325 Gvl~sm~-gc~afkd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 325 GVLRSME-GCQAFKDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhHhh-hhhHHHHHHhcchHHHHHHHHHHH
Confidence 9999883 221 2233457899999999873
No 55
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.70 E-value=8.7e-17 Score=97.54 Aligned_cols=68 Identities=56% Similarity=0.816 Sum_probs=58.0
Q ss_pred CCchhHHHHHHHHHcCCCceeEeccC-CCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHh
Q 028176 9 RSSCSHRVRIGLNLKGLEYEYKAVNL-VKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~ 76 (212)
.|||++|++++|+++|++|+...+.. ..+..+.+++.+.||.++||+|+ .+|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988843 23445668999999999999999 4899999999999999875
No 56
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.69 E-value=8.9e-16 Score=111.98 Aligned_cols=174 Identities=22% Similarity=0.218 Sum_probs=120.2
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCCCCCCCH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDL 87 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~p~~~ 87 (212)
+.||+|+|+...|...+||||.+...+. ..++.|++|.++-||+.+.||..|..+|.+.+.-...++ +
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~--~ 126 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLS--A 126 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCC--H
Confidence 3599999999999999999997665521 356789999999999999999999999999887444233 4
Q ss_pred HHHHHHHHHHHHHhcc----------------------cc------chhhHHH-HHHhhhhh-----C--ccHHHHHHHH
Q 028176 88 KRKAINYQAANIVSSS----------------------IQ------PLQNLAV-VKYIEEKA-----G--ADERDIWAKT 131 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~----------------------~~------~~~~~~~-~~~~~~~~-----~--~~~~~~~~~~ 131 (212)
.++++..++...++.- +. +.+..++ ...+..+. + .+=..+...+
T Consensus 127 e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~e 206 (281)
T KOG4244|consen 127 EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDE 206 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHH
Confidence 4455554443332211 00 0000111 11111110 0 0111223566
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC----C-CCcchHHHHHHHHhCC
Q 028176 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD----M-TQFPLLLRLHEAYSKL 195 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~----~-~~~p~l~~w~~~~~~~ 195 (212)
-+.+-|+.+++.|++ ++||+|+++|-+|+.+++.|..+...+... + +++|+|..|++|+++.
T Consensus 207 ll~rDlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 207 LLHRDLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHHHHhCC--CccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 678889999999987 899999999999999999999885432222 2 6899999999999873
No 57
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.69 E-value=1.7e-16 Score=98.37 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=61.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecC----CeeeehHHHHHHHHHHhC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~----g~~i~es~~I~~yl~~~~ 77 (212)
++||++..||+|+++|++|.++|++|+.+.++... ..+ ...+|.+++|+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 78999999999999999999999999999887431 223 356999999999943 789999999999999874
No 58
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.68 E-value=2.4e-16 Score=105.11 Aligned_cols=111 Identities=25% Similarity=0.272 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHh--hhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYI--EEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (212)
+++++++|+.+..+.+.+.+........ ......+...+...+++.+.|+.+|+.|+. ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHH
Confidence 5789999999998888776543322111 001112344566778899999999999985 789999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhC
Q 028176 167 QLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAA 202 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 202 (212)
.+.++ ...+..++++|+|.+|++++.++|++++++
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWA-PGVGLDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHH-hhcCCChhhChHHHHHHHHHHhCHHhHhhC
Confidence 99887 555555678999999999999999999864
No 59
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.68 E-value=5.6e-16 Score=106.47 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
+.+.++++++.+.+.+.......+ .......+.......+.+.+.|+.||++|+.++++|++|+++|+||+++++.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l 79 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPF---LPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAI 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHH
Confidence 567788888877776544332111 11111111222444456789999999999854578999999999999999999
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCCCCC
Q 028176 169 YAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPDA 209 (212)
Q Consensus 169 ~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~ 209 (212)
.++....+..+..+|+|.+|++++.++|++++++.++....
T Consensus 80 ~~~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~~ 120 (137)
T cd03208 80 LMVEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQPGSPRK 120 (137)
T ss_pred HHHHHhchhhhccChHHHHHHHHHHcCHHHHHHHhcCCCCC
Confidence 98732233346889999999999999999999999875443
No 60
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.68 E-value=5e-16 Score=103.63 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhH
Q 028176 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (212)
++..++++++|+.+....+.+.+.......... . +..+...+++.+.|+.||++|+. ++|++|+++|+||++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlADi~l~ 76 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYP---E-ESEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLADWAIF 76 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcC---c-ccHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHHHHHHH
Confidence 578899999999999888877555433322111 1 23567788899999999999987 68999999999999999
Q ss_pred HHHHHHHHh--cCCCCCCcchHHHHHHHHhCChhhhhhC
Q 028176 166 PQLYAAVNR--FNLDMTQFPLLLRLHEAYSKLPAFQNAA 202 (212)
Q Consensus 166 ~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 202 (212)
+.+.++... .+..+..+|+|.+|++++.++|++++++
T Consensus 77 ~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 77 PFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 988766221 1233588999999999999999999863
No 61
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=3.1e-16 Score=95.95 Aligned_cols=68 Identities=38% Similarity=0.450 Sum_probs=61.1
Q ss_pred ccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 6 ~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
....|+++++++++|+++|++|+.+.++...+ .+.+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45679999999999999999999999987653 356889999999999999999999999999999984
No 62
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.67 E-value=7.9e-16 Score=102.47 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhccccchhhHHH-HHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAV-VKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (212)
+++.+++|+.+.+..+.+.+.... ..... ....+...+....++.+.|+.+|+.|+. ++|++|+++|+||+++++.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~ 77 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYA-PEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPW 77 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHH
Confidence 478899999999998887654332 22222 1223455667788899999999999976 7899999999999999999
Q ss_pred HHHHHHhcCCC-CCCcchHHHHHHHHhCChhhhhhC
Q 028176 168 LYAAVNRFNLD-MTQFPLLLRLHEAYSKLPAFQNAA 202 (212)
Q Consensus 168 l~~~~~~~~~~-~~~~p~l~~w~~~~~~~~~~~~~~ 202 (212)
+.+. ...+.. ...+|++.+|++++.++|++++++
T Consensus 78 ~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 78 VRRL-EWIGIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHH-HhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 9888 544554 578999999999999999999875
No 63
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.66 E-value=1.7e-15 Score=99.86 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (212)
.++++++.|+.++.+.+.+.+..... . .++..+...+.+.+.|..||++|+. ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~ 72 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----G---RKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPL 72 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----C---cHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHH
Confidence 47899999999998877665432221 1 1344566778899999999999986 7999999999999999999
Q ss_pred HHHHHHhcCCCC-CCcchHHHHHHHHhCChhhhhh
Q 028176 168 LYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAFQNA 201 (212)
Q Consensus 168 l~~~~~~~~~~~-~~~p~l~~w~~~~~~~~~~~~~ 201 (212)
+.++ ...+..+ ..+|+|++|++++.++|+++++
T Consensus 73 ~~~~-~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 73 LWRL-PALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHH-HHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 8665 4455443 5799999999999999999876
No 64
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.66 E-value=2.1e-15 Score=101.33 Aligned_cols=110 Identities=21% Similarity=0.200 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHhccccchhhHHH-HHHhhh-------hhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 028176 84 PSDLKRKAINYQAANIVSSSIQPLQNLAV-VKYIEE-------KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
|.++.+++++++|+.+..+.+.+.+.... ...... ....+...+....++.+.|+.||++|+. ++|++|+
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 79 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVGD 79 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCCC
Confidence 46788999999999999888877644222 111111 0112344556777899999999999987 6899999
Q ss_pred CchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCCh
Q 028176 156 EVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLP 196 (212)
Q Consensus 156 ~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 196 (212)
++|+||+++++.+.++ ...+.....+|+|.+|++++.++|
T Consensus 80 ~~t~ADi~l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 80 KLTAADIMMSFPLEAA-LARGPLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCHHHHHHHHHHHHH-HHcCcccccCchHHHHHHHHhcCC
Confidence 9999999999999888 544545688999999999999986
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.64 E-value=1e-15 Score=92.85 Aligned_cols=71 Identities=49% Similarity=0.790 Sum_probs=63.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
|+||++..||+|++++++|+++|++|+.+.++..... ..++.+.+|.+++|+|..+|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 6899999999999999999999999999998864432 2257889999999999988999999999999984
No 66
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.64 E-value=2e-15 Score=102.26 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
+|++.+.|++.++..+.+..... .. ++..+...+.+...|+.+|+.|+.++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~ 72 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLL-----GA----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWF 72 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHH-----hc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHH
Confidence 48889999999876554433221 11 3344567778899999999999865579999999999999999999
Q ss_pred HHHHHhcC------CCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 169 YAAVNRFN------LDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 169 ~~~~~~~~------~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
.++ ...+ ..++.+|+|++|+++|.++|++++++.++
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 73 ERL-EALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred HHH-HHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCH
Confidence 876 3222 34688999999999999999999998765
No 67
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.63 E-value=1.3e-15 Score=102.22 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
+++++++|+.+....+.+.+...+...... .+...+...+++.+.|..||++|++ ++|++|+++|+||+++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~ 76 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG---GAEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATV 76 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHH
Confidence 478899999888777766554333222111 1233456677899999999999976 68999999999999999999
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 169 YAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 169 ~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
.++....+.+...+|+|.+|+++|.++|++++......
T Consensus 77 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 114 (118)
T cd03177 77 STLEALLPLDLSKYPNVRAWLERLKALPPYEEANGKGA 114 (118)
T ss_pred HHHHHhcCCChhhCchHHHHHHHHHcccchHHHHHHHH
Confidence 98832255556789999999999999999998765443
No 68
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.63 E-value=6.9e-15 Score=97.38 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhh--hhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIE--EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (212)
+++++++|+.+..+.+.+.+...+..... .....+...+...+++.+.|+.||++|+. ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHH
Confidence 47889999999988888776544332221 11123344566778899999999999986 689999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhCChhh
Q 028176 167 QLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 198 (212)
.+... ...+.....+|+|.+|++++.++|++
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRW-FELPIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHH-HHcccccccCchHHHHHHHHHhCCCC
Confidence 98654 33344468899999999999999975
No 69
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.63 E-value=4.8e-15 Score=100.19 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
+++.+++|+.++...+.+.+...+.........+....+...+++.+.|+.||+.|+. ++|++|+++|+||+++++.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~ 78 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGAL 78 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHH
Confidence 3678999999998888776654433332211223455677888899999999999986 68999999999999999999
Q ss_pred HHHHHhcCCC---CCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 169 YAAVNRFNLD---MTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 169 ~~~~~~~~~~---~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
.+. ...... +..+|++.+|++++.++|++++++.+.+
T Consensus 79 ~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 79 LLG-FTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHH-HHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 887 322222 3678999999999999999999988653
No 70
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.62 E-value=8.1e-15 Score=98.31 Aligned_cols=111 Identities=21% Similarity=0.167 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhccccchhhHHHH-HHhhh---hhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhh
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVV-KYIEE---KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 164 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l 164 (212)
+++.+.+|+.+....+.+.+..... ..... ....++..+...+.+.+.|+.||++|+. ++|++|+++|+|||++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 79 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSH 79 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHH
Confidence 5788999999888877766443322 11111 1223444556778899999999999986 7999999999999999
Q ss_pred HHHHHHHHHhcCC--CCCCcchHHHHHHHHhCChhhhhhC
Q 028176 165 APQLYAAVNRFNL--DMTQFPLLLRLHEAYSKLPAFQNAA 202 (212)
Q Consensus 165 ~~~l~~~~~~~~~--~~~~~p~l~~w~~~~~~~~~~~~~~ 202 (212)
++.+.+. ...+. .++.+|+|++|++++.++|++++++
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 80 LPYLQYL-MATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHH-HHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9999887 32222 2468999999999999999998864
No 71
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.62 E-value=5.8e-15 Score=100.18 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCchHHHHhhHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~l~~~ 167 (212)
+.+.++.+++.+.+............ .+...+...+.+.+.|..||+.|+.+ +++|++|+++|+||+++++.
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~ 75 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQN-------YEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDL 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHH
Confidence 56777777777665543332211110 12233456677899999999999864 46899999999999999999
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 168 LYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 168 l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+.++....+..+..+|+|.+|+++|.++|++++++..+
T Consensus 76 ~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~ 113 (126)
T cd03210 76 LDIHLVLAPGCLDAFPLLKAFVERLSARPKLKAYLESD 113 (126)
T ss_pred HHHHHHhChHhhhcChHHHHHHHHHHhCcHHHHHHhCc
Confidence 98883222333688999999999999999999999877
No 72
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.62 E-value=8e-15 Score=98.83 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
+++.++++++.+.+.........+ .. ..+...+...+.+.+.|..||++|+. ++|++|+++|+||+++++.+
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~ 73 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICY----SP--DFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEAL 73 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhc----Cc--chHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHH
Confidence 467788888877765543222111 11 12344556777889999999999976 68999999999999999999
Q ss_pred HHHHHhc-CCCCCCcchHHHHHHHHhCChhhhhhCCCCC
Q 028176 169 YAAVNRF-NLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 206 (212)
Q Consensus 169 ~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 206 (212)
.++ ... ...++.+|+|.+|++++.++|+++++++++.
T Consensus 74 ~~~-~~~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 74 DQH-RIFEPDCLDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred HHH-HHhCccccccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 888 443 2336789999999999999999999998883
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.62 E-value=7.3e-15 Score=98.40 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHhccccchhhHHHHHHhh--h----hhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 028176 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIE--E----KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
++.+++.+++|+.+++..+.+.+...+..... . ....++..+...+++.+.|..||+.|+. ++|++|+++|+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~ 78 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTI 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCH
Confidence 46789999999999887776654433322111 1 1223455677888899999999999986 68999999999
Q ss_pred HHHhhHHHHHHHHHhcCCCC-CCcchHHHHHHHHhCChhh
Q 028176 160 ADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 160 aD~~l~~~l~~~~~~~~~~~-~~~p~l~~w~~~~~~~~~~ 198 (212)
|||++++.+.+. ...+.++ ..+|+|.+|++++.++|++
T Consensus 79 aDi~l~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 79 ADITAFVGLDFA-KVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHhHHH-HhcCCCCccccHHHHHHHHHHHhccCC
Confidence 999999999887 5566654 5899999999999999974
No 74
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.61 E-value=9.5e-15 Score=99.15 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (212)
.+++.+++|+.++++.+.+.+...+. . .++..+...+.+.+.|+.||++|+. ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~ 72 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSF 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHH
Confidence 46889999999988877665433221 1 1344456777889999999999986 6999999999999999999
Q ss_pred HHHHHH---hcCCC---CCCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 168 LYAAVN---RFNLD---MTQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 168 l~~~~~---~~~~~---~~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
+.++.. ..+.+ .+.+|++.+|++++.++|++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 73 LGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 988721 12322 467999999999999999999998764
No 75
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.59 E-value=1.5e-14 Score=100.06 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (212)
..++.+++|++|..+.+.+.+. .... ..+++..+...+++.+.|+.||++|+. ++|++|+++|+||+++++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~ 74 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVY----KAGF--ATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTT 74 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHH----HHhh--ccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHH
Confidence 3578899999999887766432 1111 224556677888899999999999976 7999999999999999999
Q ss_pred HHHHHHh----cC---CCCCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 168 LYAAVNR----FN---LDMTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 168 l~~~~~~----~~---~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
+.++... .. ..+..+|+|.+|+++|.++|++++++..
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 75 LIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 8765211 11 1246899999999999999999998764
No 76
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.59 E-value=5.4e-15 Score=90.30 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.5
Q ss_pred eeecccC-------CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~-------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
++||.+. .||+|++++++|+++|++|+.+.++.. ..+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 4677666 799999999999999999999988742 17899999999999999999999999998
Q ss_pred Hh
Q 028176 75 EK 76 (212)
Q Consensus 75 ~~ 76 (212)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 77
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=105.92 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=135.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCC----ceeEeccCCC-CCCCChh------------------hhhhCCC----CCcC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVK-GEQFSPD------------------FLKINPI----GYVP 54 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~----~~~~~~~~~~-~~~~~~~------------------~~~~~p~----~~vP 54 (212)
+.||..-.||++.+..+.=+.+|+. ..++.-.+.. +-.+.++ |..-.|. -+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 5789999999999999999999885 2222211111 1011111 2222232 3699
Q ss_pred eEecC---CeeeehHHHHHHHHHHhCCC-----CCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHH
Q 028176 55 ALVDG---DFVVSDSFAILMYLEEKYPQ-----PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERD 126 (212)
Q Consensus 55 ~l~~~---g~~i~es~~I~~yl~~~~~~-----~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (212)
||.|. ..+-.||..|++.+...+.+ ..|+|. ..+.+++.+.+++.+.+..-+- ...+ ...+++.
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVY--k~GF----A~tq~aY 203 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVY--KAGF----ATTQEAY 203 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCcee--eecc----cchHHHH
Confidence 99953 23458999999999876652 347884 4588999999999887755321 0011 1134556
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHH----HhcCCC---CCCcchHHHHHHHHhCChhhh
Q 028176 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAV----NRFNLD---MTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~----~~~~~~---~~~~p~l~~w~~~~~~~~~~~ 199 (212)
+..-+.+-..|+.||+.|++ +.|++|+++|-||+-+++.|.++- ..+... ..+||+|..|+..+.+.|+++
T Consensus 204 eea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~ 281 (324)
T COG0435 204 EEAVKKLFEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFA 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccc
Confidence 66677788999999999998 899999999999999999997761 112222 467999999999999999999
Q ss_pred hhCC
Q 028176 200 NAAP 203 (212)
Q Consensus 200 ~~~~ 203 (212)
.++.
T Consensus 282 ~T~d 285 (324)
T COG0435 282 ETVD 285 (324)
T ss_pred cccc
Confidence 8764
No 78
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.57 E-value=3.4e-14 Score=96.45 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHH-----hhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhh
Q 028176 90 KAINYQAANIVSSSIQPLQNLAVVKY-----IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 164 (212)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l 164 (212)
++++++|+.+....+.+.+....... .......++..+...+.+.+.++.+|+++.+ +++|++|+++|+|||++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHH
Confidence 56678888888777665433221111 1111224556677788899999999998533 26899999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCcchHHHHHHHHhC--ChhhhhhC
Q 028176 165 APQLYAAVNRFNLD-MTQFPLLLRLHEAYSK--LPAFQNAA 202 (212)
Q Consensus 165 ~~~l~~~~~~~~~~-~~~~p~l~~w~~~~~~--~~~~~~~~ 202 (212)
++.+.+. ...+.+ +..+|+|.+|++++.+ +|+++++.
T Consensus 81 ~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 81 VCEIMQP-EAAGYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHH-HhcCCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 9988777 555554 4889999999999999 99998864
No 79
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.56 E-value=1.8e-14 Score=95.97 Aligned_cols=111 Identities=20% Similarity=0.065 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhccccchhhHHH-HHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAV-VKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (212)
.++++.+.|+.++.+.+.+...... ...+.. ...+...+...+.+.+.+..+|.+|.. +++|++| ++|+||+++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~~ 78 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLAL 78 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHHH
Confidence 5789999999999998877521111 110111 111133456677788999999999973 3589999 59999999999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 167 QLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
++.++ ...+.+++ |++.+|++|+.+||++++.++.
T Consensus 79 ~~~~~-~~~g~~l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 79 MLNRL-VLNGDPVP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 99999 77888774 9999999999999999998753
No 80
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.56 E-value=3.1e-14 Score=96.29 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc--------------cCCCccccCCchHHHHhhHHHHHHHHH----hcCCCC-CCc
Q 028176 122 ADERDIWAKTHIGKGFAALEKLLKD--------------YAGKYATGDEVFLADLYLAPQLYAAVN----RFNLDM-TQF 182 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~t~aD~~l~~~l~~~~~----~~~~~~-~~~ 182 (212)
.++..+...+++.+.|+.||++|++ .+++|++|+++|+|||++++.+.++.. ..++.+ +.+
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~ 102 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADL 102 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 4455677888999999999999986 346799999999999999999987621 125554 789
Q ss_pred chHHHHHHHHhCChhhhhhCCCC
Q 028176 183 PLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 183 p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
|+|++|++++.+||+++++++..
T Consensus 103 P~L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 103 TGLWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred HHHHHHHHHHHCCHHHHHHcCCH
Confidence 99999999999999999998754
No 81
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.53 E-value=9.7e-14 Score=89.37 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=75.1
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028176 70 LMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (212)
Q Consensus 70 ~~yl~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (212)
+|||++.. +++|.+..+.+.+++|++.....+.. ...+++.+.++.+|++|+. +
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~---------------------~~~~~~~~~l~~le~~L~~--~ 54 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE---------------------GSSKEKAAVLRALNSALGR--S 54 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHcC--C
Confidence 47888883 49999999999999999976532210 0124466788899999987 7
Q ss_pred CccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhC
Q 028176 150 KYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 150 ~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~ 194 (212)
+|++|+++|+|||++++.+.+. +.....+|+|.+|++++.+
T Consensus 55 ~fl~Gd~~tiADi~l~~~l~~~----~~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 55 PWLVGSEFTVADIVSWCALLQT----GLASAAPANVQRWLKSCEN 95 (96)
T ss_pred CccCCCCCCHHHHHHHHHHHHc----ccccccChHHHHHHHHHHh
Confidence 9999999999999999988653 3334689999999999976
No 82
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.52 E-value=3.7e-14 Score=92.80 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCCC
Q 028176 125 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPE 204 (212)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 204 (212)
......+++.+.|+.||++|+. ++|++|+++|+|||++++.+.+. ...+. ...+|+|++|++++.++|+++++.+.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~aDi~~~~~~~~~-~~~~~-~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAK--GPYLLGERFTAADVLVGSPLGWG-LQFGL-LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHHHHHHHHHHHHH-HHcCC-CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 3455667799999999999986 68999999999999999999998 44443 57899999999999999999998764
No 83
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.51 E-value=3.7e-13 Score=90.48 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhc-cCCCccccCCchHHHHhh
Q 028176 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLADLYL 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~l 164 (212)
|+.+|+.+++++.+ .+.+. ...+...+.+. + .+.+.+.++.||+.|+. .+++|++| ++|+|||++
T Consensus 1 d~~~ra~~~~~~~~-~~~~~---~~~~~~~~~~~---~------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l 66 (120)
T cd03203 1 DPAKREFADELLAY-TDAFT---KALYSSLIKGD---P------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAY 66 (120)
T ss_pred CHHHHHHHHHHHHH-HHHHH---HHHHHHHhcCC---c------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHH
Confidence 46688999999888 22121 11112222111 1 13356778888888873 23689999 999999999
Q ss_pred HHHHHHHHH----hcCCCC-CCcchHHHHHHHHhCChhhhhhCCCC
Q 028176 165 APQLYAAVN----RFNLDM-TQFPLLLRLHEAYSKLPAFQNAAPEK 205 (212)
Q Consensus 165 ~~~l~~~~~----~~~~~~-~~~p~l~~w~~~~~~~~~~~~~~~~~ 205 (212)
++.+.++.. ..++.+ +.+|+|.+|+++|.++|+++++.++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 67 VPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 999976621 244554 68999999999999999999998753
No 84
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.51 E-value=1.7e-13 Score=88.23 Aligned_cols=72 Identities=32% Similarity=0.424 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCC--CCcchHHHHHHHHhCCh
Q 028176 122 ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM--TQFPLLLRLHEAYSKLP 196 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~--~~~p~l~~w~~~~~~~~ 196 (212)
.++..+....++.+.|..+|+.|+. ++|++|+++|+||+++++.+.++ ...+... +.+|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWL-ERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHH-HHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHH-HHhCCCcccccCHHHHHHHHHHHcCC
Confidence 3456677888899999999999995 89999999999999999999999 5555544 89999999999999997
No 85
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.49 E-value=2e-13 Score=88.81 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=71.5
Q ss_pred HHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHH
Q 028176 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~ 173 (212)
++|+.+..+.+.+............ .....+...+++.+.|+.+|++|++ ++|++|+++|+||+++++.+.+. .
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~-~ 75 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALA-P 75 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHH-h
Confidence 3566666666654322211111111 1123455677899999999999987 68999999999999999998765 4
Q ss_pred hcCCCCCCcchHHHHHHHHhCChhh
Q 028176 174 RFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 174 ~~~~~~~~~p~l~~w~~~~~~~~~~ 198 (212)
..+..+..+|+|.+|++++.++|++
T Consensus 76 ~~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 76 EGGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred ccCCChhhCcHHHHHHHHHHhCcCC
Confidence 4455568899999999999999975
No 86
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3e-12 Score=90.15 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=127.0
Q ss_pred CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhCCCCCCCC-CCH
Q 028176 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLP-SDL 87 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~p-~~~ 87 (212)
...-|..|...|.+.++||.++..+ +.+| ++|.|++|.|..+...++|-.+|..++..+-- .|.. -+.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE 101 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSE 101 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhh
Confidence 4566899999999999999988776 4554 58999999999999999999999999998743 2221 134
Q ss_pred HHHHHHHHHHHHHhccccchhhH--------------------------HHHHHhhh---------hhCccHHHHHHHHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNL--------------------------AVVKYIEE---------KAGADERDIWAKTH 132 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~---------~~~~~~~~~~~~~~ 132 (212)
.+++.++..++.+++.+.-+=-. -+..+.+. ...++.....+.++
T Consensus 102 ~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~ 181 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQ 181 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 46778888777766543210000 00111111 11234456677888
Q ss_pred HHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC-------CCCcchHHHHHHHHhCC
Q 028176 133 IGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 133 ~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-------~~~~p~l~~w~~~~~~~ 195 (212)
+.+..+.|+..|+. .+|+.|++||-+|..+++.+..++ ....+ +..|++|-++++|+.+.
T Consensus 182 vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytil-Tt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 182 VDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTIL-TTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhh-hhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999997 899999999999999999998883 22221 47899999999999873
No 87
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=3e-13 Score=90.03 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhCC
Q 028176 126 DIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 203 (212)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 203 (212)
.+...+.+.+.+..+|.+++.. +++|++|+ +|+||+++++.+.+. ...+.+.. |+|.+|++++.++|++++++.
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~-~~~~~~~~--P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRF-RTYGLPLS--PAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 3455556667777777777543 47899999 999999999999988 55555433 999999999999999999864
No 88
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.45 E-value=2.4e-13 Score=89.20 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHH--HhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVK--YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (212)
+++++++|+.+..+.+.+.+...... +.......++..+...+++.+.++.||+.|+. ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHH
Confidence 57889999999888777654332211 11122234566677888999999999999976 689999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHh
Q 028176 167 QLYAAVNRFNLDMTQFPLLLRLHEAYS 193 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~w~~~~~ 193 (212)
.+.++ ...+.+...+|+|.+|+++++
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVA-DEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHhc-cccCCChHhCccHHHHHHhhC
Confidence 99988 555665678999999999874
No 89
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.5e-13 Score=96.73 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=130.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCC----ceeEec-cCCCCCCCC--------------------------hhhhhhCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLE----YEYKAV-NLVKGEQFS--------------------------PDFLKINPI 50 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~----~~~~~~-~~~~~~~~~--------------------------~~~~~~~p~ 50 (212)
+-||..-.|||+.+..+.++.+|+. +..+.- .-..+..+. +-|..-+|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 4689899999999999999999985 332222 100000000 111122232
Q ss_pred ----CCcCeEecC---CeeeehHHHHHHHHHHhCC---------CCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHH
Q 028176 51 ----GYVPALVDG---DFVVSDSFAILMYLEEKYP---------QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK 114 (212)
Q Consensus 51 ----~~vP~l~~~---g~~i~es~~I~~yl~~~~~---------~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (212)
-+||||-|- ..+-.||..|++.+.+.+. .-.|+| +..+++++.+.+|+.+.+...+-. -.
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGVYk--~G 193 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGVYK--CG 193 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCceee--ec
Confidence 369999954 3456899999999994332 123677 445889999999988766542210 00
Q ss_pred HhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHH----hcCCC---C-CCcchHH
Q 028176 115 YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN----RFNLD---M-TQFPLLL 186 (212)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~----~~~~~---~-~~~p~l~ 186 (212)
+ ...++..+..-..+-+.|+.+|+.|+++-+.|++|+++|-||+-|++.+.++-. .+... + .+||+|.
T Consensus 194 F----A~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~ 269 (319)
T KOG2903|consen 194 F----AEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLH 269 (319)
T ss_pred c----ccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHH
Confidence 1 113344555556688899999999998544599999999999999999866621 12222 2 5999999
Q ss_pred HHHHHHhC-ChhhhhhCC
Q 028176 187 RLHEAYSK-LPAFQNAAP 203 (212)
Q Consensus 187 ~w~~~~~~-~~~~~~~~~ 203 (212)
.|..++.+ .|+++.+..
T Consensus 270 ~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 270 NWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHHHHhhccchhhccc
Confidence 99999999 899887654
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.43 E-value=1.1e-12 Score=86.01 Aligned_cols=75 Identities=20% Similarity=0.125 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhccC--------CCccccCCchHHHHhhHHHHHHHHHhcCCCC-----CCcchHHHHH
Q 028176 123 DERDIWAKTHIGKGFAALEKLLKDYA--------GKYATGDEVFLADLYLAPQLYAAVNRFNLDM-----TQFPLLLRLH 189 (212)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~-----~~~p~l~~w~ 189 (212)
.+..+...+++.+.|+.||++|..+. ++|++|+++|+|||++++.+.++ ...+++. ..+|+|.+|+
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~-~~~~~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRL-KFLGLSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHH-HHcCccccccccccChHHHHHH
Confidence 45566778889999999999998631 25999999999999999999988 5545443 5799999999
Q ss_pred HHHhCChhh
Q 028176 190 EAYSKLPAF 198 (212)
Q Consensus 190 ~~~~~~~~~ 198 (212)
+++.+||++
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999975
No 91
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.40 E-value=1.1e-12 Score=79.24 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
..+++|.+++++|++.|+||+.+... . .+ ..+|.|+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 46899999999999999999988432 1 11 2567899999999999999999999999763
No 92
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.40 E-value=4.4e-12 Score=85.20 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhc----CCC-CCCcchHHHHHHHHhCChhhhhh
Q 028176 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF----NLD-MTQFPLLLRLHEAYSKLPAFQNA 201 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~----~~~-~~~~p~l~~w~~~~~~~~~~~~~ 201 (212)
+...+.+.+.|..||+.|... ++|++|+++|+||+++++.+.++.... +.. .+.+|+|.+|++++.+||+++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t 107 (121)
T cd03201 29 DGTEQALLDELEALEDHLKEN-GPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKT 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhc
Confidence 445567888999999999852 689999999999999999876662211 232 37899999999999999999998
Q ss_pred CCCC
Q 028176 202 APEK 205 (212)
Q Consensus 202 ~~~~ 205 (212)
++.+
T Consensus 108 ~~~~ 111 (121)
T cd03201 108 KAEK 111 (121)
T ss_pred CCCH
Confidence 8754
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.39 E-value=7.5e-13 Score=85.94 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCC-CCcchHHHHHHHHhC
Q 028176 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSK 194 (212)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~-~~~p~l~~w~~~~~~ 194 (212)
+...+...+++.+.|..+|++|+.++++|++|++||+||+++++.|..+ . .. .+ +.+|+|.+|++||.+
T Consensus 30 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~-~-~~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 30 EASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASL-R-WA-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHH-H-CC-HHTTTCHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHH-h-hc-ccccccHHHHHHHHhhcC
Confidence 3455677788999999999999996555999999999999999999766 3 22 23 599999999999975
No 94
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.37 E-value=4.7e-12 Score=76.52 Aligned_cols=65 Identities=31% Similarity=0.399 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC---CCCcchHHHHHHH
Q 028176 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEA 191 (212)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~---~~~~p~l~~w~~~ 191 (212)
+..+...+++.+.|+.||++|+. ++|++|+++|+||+++++.+.++ ...+.. .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~-~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLADIALAPFLWRL-RFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HHHHHHHHHHHHH-HHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHHHHHHHHHHHHH-HHhCcCcCccccCHHHHHHHhC
Confidence 34567788899999999999998 67999999999999999999999 544432 4899999999986
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.32 E-value=1e-11 Score=81.26 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHH
Q 028176 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (212)
++++++.+++...+.........+.. . +....+...+...+.+.+.+..||++|...+++|++|+++|+||+++++.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~ 79 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEK-D-GEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVL 79 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHH
Confidence 46778888887666554433322210 0 001134556677788999999999999753468999999999999999999
Q ss_pred HHHHHhcCC-C-CCCcchHHHHHHHH
Q 028176 169 YAAVNRFNL-D-MTQFPLLLRLHEAY 192 (212)
Q Consensus 169 ~~~~~~~~~-~-~~~~p~l~~w~~~~ 192 (212)
.++ ...+. . ...+|+|.+|++++
T Consensus 80 ~~~-~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 80 DYL-LYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHH-HhhCchhhHHhChhHHHHHHhC
Confidence 988 44443 3 57899999999875
No 96
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.32 E-value=6e-12 Score=81.49 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=68.6
Q ss_pred HHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHH
Q 028176 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~ 173 (212)
+.|+.++.+.+.+.+..............++..+...+++.+.++.||++|++ ++|+.|+++|+||+++++.+.++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~aDi~~~~~l~~~-~ 78 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLADIALAPVLARL-D 78 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHHHHHHHHHHHHH-H
Confidence 45666666655554333222111110123455677788899999999999987 68999999999999999999998 4
Q ss_pred hcCCC---CCCcchHHHHHHHH
Q 028176 174 RFNLD---MTQFPLLLRLHEAY 192 (212)
Q Consensus 174 ~~~~~---~~~~p~l~~w~~~~ 192 (212)
..+.. .+.+|+|.+|++++
T Consensus 79 ~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 79 LLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HhhhhhhhhccCccHHHHHHhC
Confidence 44443 57899999999875
No 97
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.7e-09 Score=80.36 Aligned_cols=173 Identities=21% Similarity=0.211 Sum_probs=121.7
Q ss_pred CchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCCCCCCCC-H
Q 028176 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPPLLPSD-L 87 (212)
Q Consensus 10 s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~~l~p~~-~ 87 (212)
++-|.++.+++..++-|.+++... +.+ .+|.|++|+|+ ++|..+++-..|+.+|.....+..+-+.. .
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ss-------N~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSS-------NPW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeec-------CCC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 788999999999999766655554 122 36789999999 77899999999999999853222233322 5
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHH-----------HHhh------------------------hhhCc-cHHHHHHHH
Q 028176 88 KRKAINYQAANIVSSSIQPLQNLAVV-----------KYIE------------------------EKAGA-DERDIWAKT 131 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------------------------~~~~~-~~~~~~~~~ 131 (212)
.+.+....+.+++...+.+++...++ .++. ...+. .+......+
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 57788888888887766554332221 0000 00011 122344555
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC-------CCCcchHHHHHHHHhCC
Q 028176 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-------~~~~p~l~~w~~~~~~~ 195 (212)
...+++..|.+.|++ ..|++|++||--|+.++..+..+ ...... +..+++|.++.+++++.
T Consensus 167 ~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~-~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAIL-LQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHH-HhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 667889999999998 79999999999999999999886 333322 24589999999999873
No 98
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.22 E-value=6.8e-11 Score=79.87 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC-CCCcchHHHHHHHHhCC
Q 028176 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-MTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-~~~~p~l~~w~~~~~~~ 195 (212)
.+...+.+.+.|+.+|++|+. ++|+.|+++|+||+++++.+.+.....+.+ ++.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 456677889999999999987 789999999999999999999883323555 47899999999999863
No 99
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.20 E-value=3.4e-10 Score=72.89 Aligned_cols=112 Identities=21% Similarity=0.126 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhH
Q 028176 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (212)
|..+|++.+++..|+.+.|.++-+.......-.......-.+.....+.+.+...+.+|.. |++||+|+ .||||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHH
Confidence 4578999999999999998887665555443222223344456667778888888988876 68999997 999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhhhhC
Q 028176 166 PQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAA 202 (212)
Q Consensus 166 ~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 202 (212)
+++.++ ..+|..+. +.+..|.++.-++|++++.+
T Consensus 79 ~ml~Rl-~~~gd~vP--~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 79 LMLNRL-VTYGDPVP--ERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHH-HTTT------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHH
Confidence 999999 77777554 68999999999999999865
No 100
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.13 E-value=3.7e-10 Score=73.07 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=64.2
Q ss_pred HHHHHhccccchhhHHHHHH-hhhhhCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHh
Q 028176 96 AANIVSSSIQPLQNLAVVKY-IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR 174 (212)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~ 174 (212)
|....++.+...+....... .......++..+...+++.+.|+.+|++|+. ++| +++|+||+++++.+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlADi~l~~~l~~~~~~ 78 (98)
T cd03205 4 LEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAK--LPL---DPLDLADIAVACALGYLDFR 78 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHHHHHHHHHHHHHHhH
Confidence 33333444444443333322 2233345667788889999999999999986 678 88999999999999888322
Q ss_pred -cCCC-CCCcchHHHHHHHH
Q 028176 175 -FNLD-MTQFPLLLRLHEAY 192 (212)
Q Consensus 175 -~~~~-~~~~p~l~~w~~~~ 192 (212)
.+.. .+.+|+|.+|+++|
T Consensus 79 ~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 79 HPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred ccCcchhhhChHHHHHHHhC
Confidence 2333 47899999999985
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.12 E-value=4.4e-10 Score=71.24 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCC-------CCCCcchHHHHHHHHh
Q 028176 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNL-------DMTQFPLLLRLHEAYS 193 (212)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~-------~~~~~p~l~~w~~~~~ 193 (212)
...+++.+.|+.+|+.|+. ++|++|+++|+|||++++.+.++ ...+. .++.+|+|++|++++.
T Consensus 19 ~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~-~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASI-LYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHH-HhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5567789999999999987 68999999999999999999887 33221 2467999999999874
No 102
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.10 E-value=3.6e-10 Score=70.03 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=60.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
.++||+.+.||+|.+++.+|...|++|+.+.++-. ....++...++..++|++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 37899999999999999999999999999887632 223456666778899999999999999999999984
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.10 E-value=4e-10 Score=68.51 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHh
Q 028176 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~ 76 (212)
.||+|.++.+.|...|++|+++... + -..+|.|++|+|+++|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-------n---~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-------N---PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-------C---CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 4899999999999999999987554 1 12468999999999999999999999999865
No 104
>PRK10638 glutaredoxin 3; Provisional
Probab=99.07 E-value=5.4e-10 Score=69.97 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=60.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl 73 (212)
++||....||+|.+++.+|+.+|++|+.+.++.. ....+++.+.++..++|++..||..+.+...+..+-
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~--~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD--AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHH
Confidence 8999999999999999999999999999888732 123467788999999999999999999988777653
No 105
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.98 E-value=3.4e-09 Score=64.48 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
+++||....||+|.+++-+|...|++|+.+.++... ....+...+...++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999988887322 22344555667899999999999999999999974
No 106
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.96 E-value=3e-09 Score=72.81 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhc-CC-CCCCcchHHHHHHHHhC
Q 028176 131 THIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-NL-DMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 131 ~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~-~~~~~p~l~~w~~~~~~ 194 (212)
+.+...++.+-+.+..+ ++|+.|++||+||+++++.+..+ ... ++ ++..+|++.+|++||.+
T Consensus 82 ~~L~~a~~~w~~~~~~~-~~FlaGd~ptIADisvyg~l~s~-e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGKD-RQFHGGSKPNLADLAVYGVLRSV-EGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcCC-CCccCCCCCCHHHHHHHHHHHHH-HHhccccchhhCcCHHHHHHHHHH
Confidence 33444444433445442 68999999999999999999888 544 66 78899999999999986
No 107
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.92 E-value=5.4e-09 Score=71.67 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHH-hcC-----CCCCCcchHHHHHHHHhC
Q 028176 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN-RFN-----LDMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~-~~~-----~~~~~~p~l~~w~~~~~~ 194 (212)
...+...++..+.|+.|++.|++ ++|++|+++|.+|+++++.+..+.. ..+ ..+..+|+|.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34566777788999999999998 7999999999999999999887732 222 115789999999999985
No 108
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.90 E-value=3.8e-09 Score=71.41 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHh-c---CC--CCCCcchHHHHHHHHh
Q 028176 125 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-F---NL--DMTQFPLLLRLHEAYS 193 (212)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~-~---~~--~~~~~p~l~~w~~~~~ 193 (212)
..+...+...+.|+.|++.|++ ++|++|++||.+|+++++.+..+... . +. .+..+|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3456777788999999999998 79999999999999999999887322 1 11 1478999999999974
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.90 E-value=5.8e-09 Score=63.50 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=55.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeee--ehHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYL 73 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i--~es~~I~~yl 73 (212)
|++||+...||+|.+++.+|...|++|..+.++. .....+++.+.++...+|++..+|..+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK--DSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC--CHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 8999999999999999999999999998876652 222234566778889999999778776 4555555554
No 110
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.86 E-value=9.1e-09 Score=62.72 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=57.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
++||+.+.||+|.+++.+|+.+||+|+.+.+... ....+++.+.++..++|++..||..+.+.....+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 5899999999999999999999999998877632 2345678888999999999999998887665543
No 111
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.70 E-value=3.7e-08 Score=59.75 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeeh
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~e 65 (212)
+++|+...||+|.+++.+|.+.|++|..+.++. .....+++.+.+|.+.+|++..+|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~--~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE--DPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCC--CHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 689999999999999999999999999888763 22334677788899999999987776654
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.69 E-value=6.7e-08 Score=58.35 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=57.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
++||+...||+|++++.+|..++++|+.+.+... .....++.+.++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 5799999999999999999999999997777632 22346677788889999999999999999887754
No 113
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.62 E-value=1.1e-07 Score=59.04 Aligned_cols=61 Identities=15% Similarity=0.346 Sum_probs=47.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeee
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~ 64 (212)
+++||....||+|.+++-+|..+||+|+.+.++-.. ....++ ..++..++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~--~~~~~~-~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP--EAAETL-RAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCCCcCEEEECCEEEe
Confidence 479999999999999999999999999999887321 111223 3467789999997776554
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.61 E-value=1.6e-07 Score=57.48 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCC-CcCeEecCCeeeehHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~g~~i~es~~I~~yl 73 (212)
++||+.+.||+|.+++-+|...|++|+.+.++.. .....++....... ++|++..+|..+.+...+.++-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 6899999999999999999999999999888732 11223444444444 8999999999999988887753
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-07 Score=57.90 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=54.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
++++|..+.||||.+++-+|..+|++|+.+.++....+...+.....++..++|++..||..+.+...+.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHH
Confidence 37899999999999999999999999999998854432233344455578999999988877765444433
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.52 E-value=1.8e-07 Score=57.43 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=49.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhC-CCCCcCeEe-cCCeeeehH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALV-DGDFVVSDS 66 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~~vP~l~-~~g~~i~es 66 (212)
++||+..+||+|++++..|...|++|+.+.++ .......++.+.+ +...+|++. ++|..+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 68999999999999999999999999977665 2223345556676 888999998 677776554
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.51 E-value=3.7e-07 Score=56.43 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=57.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...+++.+.+....+|++..+|..+.+...+..+-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 57999999999999999999999999999887321 233556666677899999999999988887776544
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.44 E-value=1.2e-06 Score=54.95 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=60.2
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCCceeEeccCCCCCCCChhhhhhCCC--CCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
+++|+.+.||+|.+++-+|.. .|++|+.+.++... ...+++...... .++|++..||..+.+...|..++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 689999999999999999999 89999988887321 112344443332 589999999999999999999998
Q ss_pred HhCC
Q 028176 75 EKYP 78 (212)
Q Consensus 75 ~~~~ 78 (212)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.39 E-value=7.2e-07 Score=54.10 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=43.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCe
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~ 61 (212)
++||+...||+|.+++-+|+.+|++|+.+.++-.. ...+++. ..+...+|++..+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~~-~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYVK-AQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHHH-HcCCcccCEEEECCC
Confidence 58999999999999999999999999998887321 1223333 345678999996554
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.38 E-value=3.8e-07 Score=53.21 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=49.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i 63 (212)
+++|+...||+|.+++-+|...|++|+.+.++... ...+++.+.+...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998432 2345555666678999999888754
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.33 E-value=3.2e-06 Score=53.10 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=57.7
Q ss_pred eeecccCCCchhHHHHHHHHHcC-----CCceeEeccCCCCCCCChhhhhhCCC--CCcCeEecCCeeeehHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
+++|+.+.||+|.+++-+|...+ ++|+.+.++... ....++...... ..||++..||..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999984 567766665211 112344444433 689999999999999999999988
Q ss_pred HhCC
Q 028176 75 EKYP 78 (212)
Q Consensus 75 ~~~~ 78 (212)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.31 E-value=2.8e-06 Score=52.78 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=59.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCC-CCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~ 75 (212)
+++|+...||+|.+++-+|...+++|+...++.... .....++.+.+...++|++..+|..+.+...|..+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 578999999999999999999999999998885432 11123455666677999999999999999988887654
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.26 E-value=3.6e-06 Score=54.34 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCC-CCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
+++|..+.||+|.+++-+|...|++|+.+.++..... .....+...+...++|.+..+|..+.+...+...
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999999999888843210 1112345556778999999999999888777663
No 124
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.21 E-value=6.5e-06 Score=49.63 Aligned_cols=55 Identities=31% Similarity=0.409 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHcCCC---ceeEeccCCCCCCCChhhhhhCCCCCcCeEec-CCeeeehHHHHHHHH
Q 028176 9 RSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~i~es~~I~~yl 73 (212)
.+|-|.++.++|...+.+ |+++..+ ++ .++|.|++|+|.+ ++..+++-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 589999999999999999 7777766 22 2689999999997 899999999999997
No 125
>PHA03050 glutaredoxin; Provisional
Probab=98.17 E-value=8e-06 Score=53.51 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=56.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---CceeEeccCCC-CCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
+++|..+.||||.+++-+|...|+ +|+.+.++-.. +..-..++.+.+...+||.+..+|..+.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 679999999999999999999999 78888887321 11124567777777899999999999988776665
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.04 E-value=2.1e-05 Score=48.98 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=56.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCC--ceeEeccCCCCC-CCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~--~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~ 75 (212)
+++|+.++||+|.+++-+|...+++ |+...++..... .....+.+.+...++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888888753211 1112345556667899999999999999888876543
No 127
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.94 E-value=4.1e-05 Score=49.21 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
+.||||.+++-+|...|++|+.+.+. .......++.+.+...++|.+..||..+.+...+...
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHH
Confidence 78999999999999999999987775 2222334555667778999999999998887777664
No 128
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.88 E-value=0.00012 Score=49.46 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhh
Q 028176 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 198 (212)
....++++..|..||.++.. +-.+++++|+-|+.+|+.|+.+...-|..+. |++.+|+++|.+.-.+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~---~~~~n~~LS~dDi~lFp~LR~Ltivkgi~~P--~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLAS---PNAVNGELSIDDIILFPILRSLTIVKGIQWP--PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SC---TTBTTSS--HHHHHHHHHHHHHCTCTTS-----HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhcc---ccccCCCCCHHHHHHHHHHhhhhhccCCcCC--HHHHHHHHHHHHHcCC
Confidence 45667788889999999985 3344448999999999999999333334333 7899999999986544
No 129
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.82 E-value=9.1e-05 Score=46.90 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
+.||+|.+++-+|...|++|+.+.+... .....++.+.+...++|++..||..+.+...+...
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 5899999999999999999999988632 22334556667777999999999999888877764
No 130
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.82 E-value=6e-05 Score=50.45 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhh
Q 028176 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 198 (212)
...++++..|..++..+.. +-.+++.+|+-|+.+|+.|+.+....|..+. |++..|+++|++.-.+
T Consensus 60 ~~i~~l~~~L~~l~~ll~~---~~~~n~~ls~DDi~lFp~LR~Lt~vkgi~~P--~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLILS---SEAVNGQLSTDDIILFPILRNLTLVKGLVFP--PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHcC---ccccCCcCCHHHHHHHHHHhhhhhhcCCCCC--HHHHHHHHHHHHHhCC
Confidence 5667788899999999954 2235667999999999999999444455333 7899999999986543
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.60 E-value=0.0019 Score=52.53 Aligned_cols=67 Identities=9% Similarity=0.168 Sum_probs=51.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhh-h--------hCCCCCcCeEecCCeeeehHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL-K--------INPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~--------~~p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
+++|..+.||+|.+++-+|...||+|+.+.++-. . ...++. . .+...+||++..||..+.+-.....
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 7899999999999999999999999999888721 1 111221 1 2355689999988988888776655
No 132
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.48 E-value=0.00016 Score=48.06 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=31.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|.+++-.|+.+|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 899999999999999999999999999988875
No 133
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.44 E-value=0.00019 Score=48.83 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|++|.+++-.|..+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 899999999999999999999999999988876
No 134
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.41 E-value=0.00064 Score=46.99 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=53.7
Q ss_pred eeecccC------CCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCC----CCCcCeEecCCeeeehHHHHHH
Q 028176 2 LKLFSYW------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~L~~~~------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~~vP~l~~~g~~i~es~~I~~ 71 (212)
++||..+ .+|+|.+++.+|+.++|+|+.+.++.. ....+++.+... ..++|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5788887 899999999999999999998888742 123445555433 3689999999999988877776
Q ss_pred H
Q 028176 72 Y 72 (212)
Q Consensus 72 y 72 (212)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 135
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0001 Score=60.11 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred cCCeeeehHHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHHHHHHH
Q 028176 58 DGDFVVSDSFAILMYLEEKYP-QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKG 136 (212)
Q Consensus 58 ~~g~~i~es~~I~~yl~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (212)
.+|..+.++..+..|...... ...++|.+ .++.+++.|+++... . ....+...
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-~------------------------~~~~~s~~ 96 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-F------------------------SFDEISSS 96 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-c------------------------chHHHHHH
Confidence 446666666666676654332 23477777 789999999998754 0 01346777
Q ss_pred HHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC--CCCcchHHHHHH
Q 028176 137 FAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD--MTQFPLLLRLHE 190 (212)
Q Consensus 137 l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~--~~~~p~l~~w~~ 190 (212)
+..++..|.. ..||+|.++|+||+++|+.++.--...+.. ...+-++.+|+.
T Consensus 97 ~~~ld~~l~~--~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 97 LSELDKFLVL--RTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHHHHhhhhH--HHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 8888899988 799999999999999999997631111110 134566778877
No 136
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.32 E-value=0.00033 Score=47.62 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=31.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|++++-.|..+||+|+++.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 899999999999999999999999999998876
No 137
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.23 E-value=0.00044 Score=46.94 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=31.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|++++-.|..+|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 899999999999999999999999999998876
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.15 E-value=0.0017 Score=38.40 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=40.3
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~ 64 (212)
+++|+.++||+|.+++-+|+.. +++|....++ ..++.........+|++..+|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 6899999999999999998765 4666555444 2234444444567999997776654
No 139
>PRK10853 putative reductase; Provisional
Probab=97.10 E-value=0.00075 Score=44.94 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|.-|++++-.|+.+|++|+++.+.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 899999999999999999999999999988765
No 140
>PRK10824 glutaredoxin-4; Provisional
Probab=97.10 E-value=0.0019 Score=42.66 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
+.||||.+++-+|...|++|..+.++-. ..-...+.+.+...++|-+-.+|..|.++..+...
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 4899999999999999999998777632 22334566677778999999999999888777664
No 141
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00076 Score=44.75 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=31.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|.-|++++-.|+.+||+|+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 699999999999999999999999999988765
No 142
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.95 E-value=0.00098 Score=43.93 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.||+|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999988876
No 143
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.80 E-value=0.0017 Score=42.31 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.||+|.+++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999988886
No 144
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.009 Score=35.58 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=46.4
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCC--------CCCChhhhhhCCC--CCcCeEe-cCCeeee
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG--------EQFSPDFLKINPI--GYVPALV-DGDFVVS 64 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~p~--~~vP~l~-~~g~~i~ 64 (212)
|-+|||...||-|......|+-.+++|+.+.+.-.-. ....++|-+.... --+|+|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 4589999999999999999999999999988753210 1123455433333 3479999 7787765
No 145
>PRK10026 arsenate reductase; Provisional
Probab=96.52 E-value=0.0033 Score=43.11 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=30.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
||++|+.+.|.-|++++-.|+.+|++|+++.+-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 489999999999999999999999999988875
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.48 E-value=0.0038 Score=41.55 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988875
No 147
>PTZ00062 glutaredoxin; Provisional
Probab=96.44 E-value=0.0092 Score=43.69 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHH
Q 028176 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
+.||+|.+++-+|...||+|+...+. ..+.-...+.+.+...++|.+..+|..+.+...+.+
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 57999999999999999999977776 222233455566667799999999999888776665
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.33 E-value=0.0055 Score=40.47 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.|+.|++++-.|+.+|++|+++.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999988876
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.33 E-value=0.0053 Score=39.99 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|+.|++++-.|..+|++|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988876
No 150
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.026 Score=36.56 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=53.2
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEeccCCCCC-CCChhhhhhCCCCCcCeEecCCeeeehHHHHHHH
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~y 72 (212)
.+|.-..||+|.+++-+|...++++.++.+|-.... .-...+.+.+-..++|.+-.+|..+.+...+..+
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 456678899999999999999999999999855311 1112233445556999999999999888887765
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.00 E-value=0.037 Score=35.06 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=49.2
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCC----CCCcCeEecCCeeeehHHHHHH
Q 028176 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~L~~~~~s~------~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~~vP~l~~~g~~i~es~~I~~ 71 (212)
++||+...++ .|+.++.+|..+||+|+.+.++.. +....++.+..+ ...+|-+..++..+.+.-.+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d--~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN--EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC--HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5778776655 456788999999999999998853 234455555543 3688988888888887755554
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.91 E-value=0.012 Score=39.61 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+||+.+.|.-|++++-.|+++||+|+++.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 68999999999999999999999999988875
No 153
>PHA02125 thioredoxin-like protein
Probab=95.63 E-value=0.043 Score=33.23 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=37.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (212)
|+.+|+.++|+.|..+.-.|+. +.++...++.. ...++.+...-..+|++.
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeEE
Confidence 8899999999999999888763 56666666632 234555555567889998
No 154
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.049 Score=34.58 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=47.9
Q ss_pred cCCCchhHHHHHHHHHcC-CCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHH
Q 028176 7 YWRSSCSHRVRIGLNLKG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl 73 (212)
++.|+||.++--+|.+.| ++|..+.| -..+.-+..+...+-..++|=|-.+|+.+.+|..|.+..
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 567999999999999999 55554444 333333444455566788999999999999988777654
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.44 E-value=0.021 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|.-|++++-.|+.+|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 68999999999999999999999999987764
No 156
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.39 E-value=0.022 Score=37.69 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=29.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987765
No 157
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.03 E-value=0.18 Score=30.60 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=38.2
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeee
Q 028176 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (212)
Q Consensus 2 ~~L~~~~~s~~~~~v----r~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i 63 (212)
+++|. ++||.|..+ .-++.+.|+++++..++- .++..+ .-...+|++..||..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEE
Confidence 45554 999999988 667788899988888871 222222 3456889999777654
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.99 E-value=0.12 Score=31.56 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=39.4
Q ss_pred CeeecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCe
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~ 61 (212)
+++||+.++||+|..+.-.++. .+..+....++... ..+..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 5789999999999988888753 34446666666432 233444455567999996664
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.74 E-value=0.13 Score=32.31 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=39.2
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~ 64 (212)
+++|..++|++|..+.-++... ++.|..+.++ ..++......-..+|++..||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 5788889999999988877554 5666655555 2244444455567999997776544
No 160
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.45 E-value=0.24 Score=30.44 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=39.8
Q ss_pred eeecccCCCchhHHHHHHHHHc--CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLK--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD 60 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g 60 (212)
++||+.+.|+.|..++..|... ..+|+...+|+.. .+++....- ..+|||..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 5899999999999999999964 4567788888763 344444443 5899999555
No 161
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.86 E-value=0.3 Score=34.67 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcc-CCCccccCC-chHHHHhhHHHHHHH
Q 028176 133 IGKGFAALEKLLKDY-AGKYATGDE-VFLADLYLAPQLYAA 171 (212)
Q Consensus 133 ~~~~l~~le~~L~~~-~~~~l~G~~-~t~aD~~l~~~l~~~ 171 (212)
-.+.+..|++.|+.. ...|++|++ +|-+||.+++.|.-+
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 457889999999872 138999987 999999999998876
No 162
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.39 E-value=0.84 Score=27.55 Aligned_cols=55 Identities=20% Similarity=0.057 Sum_probs=35.2
Q ss_pred eeecccCCCchhHHHHHH----HHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeee
Q 028176 2 LKLFSYWRSSCSHRVRIG----LNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~----l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~ 64 (212)
+++ ....||+|..+.-+ +...|+.++...+. ..++. .......+|++..||...+
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~ 61 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVF 61 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEE
Confidence 466 45669999966664 45567777665553 12333 4555788999997777544
No 163
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.33 E-value=0.47 Score=30.92 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHHc---CCCceeEeccCCCCCCCChhhhh-hCC-CCCcCeEe-cCCe-------------eeehHHHH
Q 028176 9 RSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLK-INP-IGYVPALV-DGDF-------------VVSDSFAI 69 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~-~~p-~~~vP~l~-~~g~-------------~i~es~~I 69 (212)
.||.|..+.-+|... .-..+++.|+.... +.+..+ +.. ...+|+|+ .+|. .|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 488888888777653 23456667765432 233332 222 46789999 5443 68999999
Q ss_pred HHHHHHhCC
Q 028176 70 LMYLEEKYP 78 (212)
Q Consensus 70 ~~yl~~~~~ 78 (212)
++||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999997
No 164
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.44 E-value=0.59 Score=25.93 Aligned_cols=53 Identities=30% Similarity=0.286 Sum_probs=34.5
Q ss_pred eeecccCCCchhHHHHHHHH-----HcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe
Q 028176 2 LKLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (212)
+.+|+...|++|.+.+..+. ..++.+..+.++... .. .......+...+|++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--AL-EKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--HH-hhHHHhCCCccccEEE
Confidence 45677889999999999998 455555555554221 11 1111356678899998
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.68 E-value=0.36 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.9
Q ss_pred cccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 5 FSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 5 ~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
||.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987775
No 166
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=89.39 E-value=0.94 Score=29.09 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=38.8
Q ss_pred eeecccCCCch------hHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhC---------CCCCcCeEecCCeeeehH
Q 028176 2 LKLFSYWRSSC------SHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN---------PIGYVPALVDGDFVVSDS 66 (212)
Q Consensus 2 ~~L~~~~~s~~------~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------p~~~vP~l~~~g~~i~es 66 (212)
+++|....++. .+++..+|+.++|+|+.+.+... +....+.++.. +....|-+..|+..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 67887776654 45899999999999998887742 23334444333 223346677777766655
Q ss_pred HHHHH
Q 028176 67 FAILM 71 (212)
Q Consensus 67 ~~I~~ 71 (212)
-.+-+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=1.9 Score=31.90 Aligned_cols=65 Identities=11% Similarity=-0.007 Sum_probs=49.1
Q ss_pred cCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHH
Q 028176 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl 73 (212)
.+.|++++++.-+|...|++|....|-- .+.-+.-.+..+-..+.|=|-.+|+-+.+...|.+.+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~--DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLT--DEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccC--CHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 4679999999999999999998777752 2222333445666788999999999888877666543
No 168
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=84.98 E-value=4.5 Score=26.94 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=13.5
Q ss_pred CcCeEe--cCCeeeehHHHHHHHHHHhCC
Q 028176 52 YVPALV--DGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 52 ~vP~l~--~~g~~i~es~~I~~yl~~~~~ 78 (212)
.-|-|+ .+|..++|+.||++|+.+-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 337785 567889999999999998875
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=83.22 E-value=4.8 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=35.0
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
+.+|+.++|+.|....-.+.. .+-.+....++.. ..+++........+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 456778899999988777754 1112444555532 234444444456789888 566554
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=79.29 E-value=4.2 Score=25.91 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=32.0
Q ss_pred eeecccCCCchhHHHHHHH--------HHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe
Q 028176 2 LKLFSYWRSSCSHRVRIGL--------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (212)
+..|+.++|+.|....-.+ ...+ .+....++.........++.+......+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567788999999876433 2222 45656666433211124454444556789888
No 171
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=77.47 E-value=13 Score=22.27 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=33.9
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
+..|+...|+.|....-.+.. .++.+-...++ ....+........+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCE
Confidence 445677889999988888766 55554433333 234444444456789987 4555
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=75.03 E-value=8.5 Score=33.02 Aligned_cols=57 Identities=26% Similarity=0.226 Sum_probs=39.0
Q ss_pred eeecccCCCchhHHHHHHH----HHc-CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeee
Q 028176 2 LKLFSYWRSSCSHRVRIGL----NLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l----~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~ 64 (212)
+++|....||+|-.+.-++ .+. +|..+.+.+. ..++......-..||.+..||+++.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~------~~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS------HFPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc------ccHHHHHhCCceecCEEEECCEEEE
Confidence 5788899999998766544 344 6777766665 2345554555678999997775543
No 173
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=73.48 E-value=24 Score=23.47 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=32.4
Q ss_pred eecccCCCchhHHHHHHHH----HcCCCceeEeccCCCC-CCCC----hhhhhhC----CCCCcCeEe--cCCeee
Q 028176 3 KLFSYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVKG-EQFS----PDFLKIN----PIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~----~~~i~~~~~~~~~~~~-~~~~----~~~~~~~----p~~~vP~l~--~~g~~i 63 (212)
..|+.++||+|+.+.=.|. ..++++-.+.++.... +... .++.+.. ....+|+++ .+|..+
T Consensus 28 v~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 28 FFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 3468889999998655553 3445544444442211 1111 1333322 234589999 677543
No 174
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.13 E-value=19 Score=23.49 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=36.6
Q ss_pred eecccCCCchhHHHHHHHHHcC---CCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKG---LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~---i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i~ 64 (212)
..|+.++|+.|+.+.-.++... -......+|.. ...+..+...-..+|++. .+|..+.
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 3567788999997776664411 12355666643 344555555667899999 6777654
No 175
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=70.08 E-value=16 Score=23.87 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=30.8
Q ss_pred ccCCCchhHHHHHHHHHcCCC---ceeEeccCCCCCCCChhhhhhCCCCCcCeEe
Q 028176 6 SYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 6 ~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (212)
+.++||+|..++-+++...-. .+...++.. ..++......-..+|++.
T Consensus 30 ~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 30 SKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 567999999888777644322 234445533 245555555567899999
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=69.61 E-value=5.1 Score=33.99 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---CceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehH----HHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es----~~I~~yl~ 74 (212)
+++|....||||-.+.-+++..-+ ..+...++. ...+++........||.+..|+..+.+. ..++..+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 688999999999987766654332 233333342 2345555555677999999776554432 34555555
Q ss_pred Hh
Q 028176 75 EK 76 (212)
Q Consensus 75 ~~ 76 (212)
..
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 43
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.54 E-value=5.7 Score=33.69 Aligned_cols=71 Identities=20% Similarity=0.152 Sum_probs=43.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCC---ceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehH----HHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es----~~I~~yl~ 74 (212)
+++|....||||-.+.-+++...+. .+...++ . ...+++........||.+..|+..+.+. ..+++.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id---~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMID---G-ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE---c-hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 6789999999999887777554332 2223333 2 2334555555567999999766555442 23444454
Q ss_pred Hh
Q 028176 75 EK 76 (212)
Q Consensus 75 ~~ 76 (212)
..
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 43
No 178
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=62.64 E-value=8.2 Score=25.22 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.6
Q ss_pred cCeEe-cCCeeeehHHHHHHHHHHhCC
Q 028176 53 VPALV-DGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 53 vP~l~-~~g~~i~es~~I~~yl~~~~~ 78 (212)
+|.+. .+|.++++|..|++++..++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35556 889999999999999888864
No 179
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=61.96 E-value=10 Score=28.35 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCCCCCcchHHHHHHHHhCChhhh
Q 028176 134 GKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 134 ~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 199 (212)
...++.++..|.. ++|.-|.+++-+|+.++..+.-- ..-..+++..+|+..+.+...+.
T Consensus 10 ~~glk~l~~sLA~--ks~~~g~~~s~edv~vf~al~~e-----p~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAE--KSYIEGYQLSKEDVVVFAALGVE-----PQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhc--ccCCCCCCcccccceeehhcccC-----cchhhhhHHHHHHHHHHHHHHHH
Confidence 5678899999998 89999999999999887754211 11245677788888777754444
No 180
>PTZ00051 thioredoxin; Provisional
Probab=61.83 E-value=36 Score=21.06 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=32.4
Q ss_pred eecccCCCchhHHHHHHHHHc---CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCee
Q 028176 3 KLFSYWRSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~ 62 (212)
..|+.++|+.|+...-.++.. ...+....++.. ....+.+......+|++. .+|..
T Consensus 23 i~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 23 VDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 456788999999776655442 122344455532 233444444456789888 56654
No 181
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=58.93 E-value=41 Score=20.79 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=43.2
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee------ehHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV------SDSFAI 69 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i------~es~~I 69 (212)
+..|+.++|+.|...+=.+.. .+-++....++.. ....+.+......+|++. .+|..+ .+...|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 356678899999988755532 2225666666643 345555555577899999 566543 234456
Q ss_pred HHHHHH
Q 028176 70 LMYLEE 75 (212)
Q Consensus 70 ~~yl~~ 75 (212)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666543
No 182
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=58.24 E-value=36 Score=25.09 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=32.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---CceeEeccCCCCCCCChhhhhhCCCCCcCeEe
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (212)
+++|+.++||+|..+.-+++...- ......+|.. ..++......-..+|++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 456888999999988877765321 2333345532 234454555556789999
No 183
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=57.37 E-value=19 Score=24.74 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=45.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhh-C---CCCCcCeEecCCeeeeh---HHHHHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-N---PIGYVPALVDGDFVVSD---SFAILMYLE 74 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-~---p~~~vP~l~~~g~~i~e---s~~I~~yl~ 74 (212)
|..|+.++|++|..-.=.|+.+|+..+.+..+-. ...++. + ..+.==+.+.+|..+-+ ..+|.+.|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 6789999999999999999999988877666511 112211 0 01111234456665533 467899988
Q ss_pred HhC
Q 028176 75 EKY 77 (212)
Q Consensus 75 ~~~ 77 (212)
+..
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 876
No 184
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.22 E-value=51 Score=26.72 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=75.6
Q ss_pred cCeEecCCeeeehHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHHHhccccchhhHHHHHHhhhhhCccHHHHHHHH
Q 028176 53 VPALVDGDFVVSDSFAILMYLEEKYPQPPLL-PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKT 131 (212)
Q Consensus 53 vP~l~~~g~~i~es~~I~~yl~~~~~~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (212)
.+.+.+.+..+.|+.+|+.-|...-. .++ +-+..++.++-.|+..+.+.-.+..+..+.+..-...-.....+.-..
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~--~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~~~d~~ 175 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE--WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGEEYDEE 175 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH--HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCCCCcHH
Confidence 34444556789999999988876522 233 346778888888888776654443333333221111000000111225
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhc-CCCCCCc-chHHHHHHHHhCC
Q 028176 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-NLDMTQF-PLLLRLHEAYSKL 195 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~-p~l~~w~~~~~~~ 195 (212)
+++..|+.+|+.... .+|...+.-.-.|++..-.++...... ...-+.- +...++.+|...-
T Consensus 176 ~i~~~l~~~e~~Y~G--dGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~f 239 (361)
T PF10022_consen 176 RIDYDLERIEEWYLG--DGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRF 239 (361)
T ss_pred HHHHHHHHHHHHhcc--CCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 677888888887765 567775556677988866555441111 1111111 2466666666553
No 185
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.64 E-value=16 Score=22.21 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHcCCCceeEecc
Q 028176 9 RSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
.-+|++|+.-+|+..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 4689999999999999999966554
No 186
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.34 E-value=23 Score=27.31 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhC----CCCCcCeEecCCeeeehHHHHHH
Q 028176 12 CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN----PIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 12 ~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~----p~~~vP~l~~~g~~i~es~~I~~ 71 (212)
.|..||.+|+-.+|.|+.+.|.+.. ...+|+..+- -.-.+|.+-.+|..|.+.-.|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~--~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDS--EFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccH--HHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 4779999999999999999999764 2344544322 23568966699999988877765
No 187
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=52.22 E-value=41 Score=21.71 Aligned_cols=72 Identities=15% Similarity=0.027 Sum_probs=40.0
Q ss_pred ecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCC-hhhhhh---CCCCCcCeEecCCe-eeehHHHHHHHHHHh
Q 028176 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFS-PDFLKI---NPIGYVPALVDGDF-VVSDSFAILMYLEEK 76 (212)
Q Consensus 4 L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~---~p~~~vP~l~~~g~-~i~es~~I~~yl~~~ 76 (212)
|+|...||.|....-.+......-.+..++........ .....+ +....+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46778999999888777777653333344431111110 001111 12233333 55665 999999998875544
No 188
>PHA02278 thioredoxin-like protein
Probab=51.79 E-value=62 Score=20.75 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=32.0
Q ss_pred cccCCCchhHHHHHHHHHc----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 5 FSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 5 ~~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
|+.++|+.|+...=.++.. +....+..++........+++.+..--..+|++. .||..+
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4667899998666444332 2223344555432211123444444456789999 577654
No 189
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=51.06 E-value=56 Score=20.04 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=35.0
Q ss_pred eeecccCCCchhHHHHHHHHHc----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
+..|+.++|+.|++..-.|+.. +..+....++.. ...++........+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 3456778999999887766542 334565666632 233443333346689888 566543
No 190
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=48.27 E-value=57 Score=19.35 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCcCeEecCCeeeehHHHHHHHHHHhC
Q 028176 51 GYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 51 ~~vP~l~~~g~~i~es~~I~~yl~~~~ 77 (212)
..-||+..+| ..+|-.+|.+||....
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 4559999888 7888999999999833
No 191
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=44.43 E-value=97 Score=22.78 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=33.1
Q ss_pred eeeccc---CCCchhHHHHHHHHHc-----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 2 LKLFSY---WRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~L~~~---~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
+.+|.. ++||.|..+.-.++.. ++.+....++.. ...+.....--..+|++. .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCe
Confidence 346666 7899999877777554 233334444422 234444445567789999 4554
No 192
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=44.09 E-value=40 Score=20.75 Aligned_cols=56 Identities=16% Similarity=0.005 Sum_probs=33.5
Q ss_pred eecccCCCchhHHHHHHHHHc----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCee
Q 028176 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~ 62 (212)
..|+.++|+.|+...-.++.. +-.+....++.. ....+.+.-....+|++. .+|..
T Consensus 17 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 17 VDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 345677899999776655432 213444556543 244555444556789999 66654
No 193
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=42.07 E-value=93 Score=19.99 Aligned_cols=56 Identities=16% Similarity=0.001 Sum_probs=31.7
Q ss_pred eecccCCCchhHHHHHHH-----HHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCee
Q 028176 3 KLFSYWRSSCSHRVRIGL-----NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~ 62 (212)
..|+.++|+.|+...-.+ ++.+..+.+..++... .........-..+|++. .+|..
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEE
Confidence 456778899997654333 2223334445555332 23444444557889888 66654
No 194
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=41.30 E-value=21 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=20.4
Q ss_pred eecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+||......-+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6788888888999999999999998765544
No 195
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=41.15 E-value=45 Score=20.73 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=29.4
Q ss_pred eecccCCCchhHHHHHHH-----HHcC-CCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 3 KLFSYWRSSCSHRVRIGL-----NLKG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l-----~~~~-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
.+|+.++|+.|+...=.+ ...+ -.+....++... .....+.+...-..+|++. .+|.
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCC
Confidence 456778899999774222 2211 223344444322 1234444444445689887 4554
No 196
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=40.58 E-value=21 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHhCC-hhhhhhCCCCCCCCCC
Q 028176 180 TQFPLLLRLHEAYSKL-PAFQNAAPEKQPDAPS 211 (212)
Q Consensus 180 ~~~p~l~~w~~~~~~~-~~~~~~~~~~~~~~~~ 211 (212)
+.|.++++|++.+++. |++.+++..+.-+.|.
T Consensus 94 ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 94 ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred hhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 5688999999999885 8888888777666664
No 197
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=37.14 E-value=1.2e+02 Score=19.85 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred eecccCCCchhHHHHHHHHH------cCCCceeEeccCCCCCCCChhhhhhCCCC-CcCeEe--c-CCeeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL------KGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALV--D-GDFVVS 64 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~--~-~g~~i~ 64 (212)
.-|+..+|+.|....-.+.. .+..|- .+++.... .+.....+..| .+|++. + +|..+.
T Consensus 24 V~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv--~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 24 LLIHKTWCGACKALKPKFAESKEISELSHNFV--MVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEE--EEEecCCC--CchhhhcccCCCccceEEEECCCCCCch
Confidence 34567889999987655544 223344 44433221 11112333443 589998 3 566554
No 198
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=37.02 E-value=1.2e+02 Score=19.79 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=12.9
Q ss_pred eeecccCCCchhHHHHH
Q 028176 2 LKLFSYWRSSCSHRVRI 18 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~ 18 (212)
+..|+.++|++|.+..-
T Consensus 18 lv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 18 LLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 45667889999998753
No 199
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=34.53 E-value=1.4e+02 Score=19.83 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHH----HHcCCCceeEeccCCCCC---CCChhhhhhCCCC-CcCeEe--cCCeeeeh
Q 028176 8 WRSSCSHRVRIGL----NLKGLEYEYKAVNLVKGE---QFSPDFLKINPIG-YVPALV--DGDFVVSD 65 (212)
Q Consensus 8 ~~s~~~~~vr~~l----~~~~i~~~~~~~~~~~~~---~~~~~~~~~~p~~-~vP~l~--~~g~~i~e 65 (212)
.+||.|+.+.-.+ ....-.+.+..++..... ....++....-.. .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 6899898654433 333323556666654321 1123333322223 789998 44554444
No 200
>PRK10996 thioredoxin 2; Provisional
Probab=34.02 E-value=67 Score=21.78 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=34.3
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
+..|+.++|+.|+...-.+.. .+-.+.+..++.. ..+++.+...-..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 345677889999876544433 2323555556543 234555444456789988 567644
No 201
>PHA03075 glutaredoxin-like protein; Provisional
Probab=32.88 E-value=74 Score=21.13 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=46.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCC-eeeehHHHHHHHHHHhC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD-FVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g-~~i~es~~I~~yl~~~~ 77 (212)
+.|+|-+.|+-|+.+.-+|++..=.|+..+|+.-. |. +..|++=+|..|+ ..+ -.+|.+||...+
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS-------fF--sK~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNILS-------FF--SKDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee-------ee--ccCCceEEEecccceeh--HHHHHHhhcccE
Confidence 68999999999999999999999999999998532 11 2246777777443 322 245677776544
No 202
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.3e+02 Score=22.42 Aligned_cols=70 Identities=24% Similarity=0.166 Sum_probs=47.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCCceeEeccCCCCCCCChhhhh-hCCCCCcCeEecCCeee----ehHHHHHHHHHH
Q 028176 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-INPIGYVPALVDGDFVV----SDSFAILMYLEE 75 (212)
Q Consensus 1 m~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~g~~i----~es~~I~~yl~~ 75 (212)
|+|+|.+-+|--|....=.|+.+|+-=.+..++.. .+.|.. .+---.+|.+..||+.+ .|--.|-+-+.-
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~-----~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~G 86 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAE-----LPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILSG 86 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcC-----CChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHcC
Confidence 57899999999999999999999997776666632 223322 22345689999777654 344445554443
No 203
>COG3150 Predicted esterase [General function prediction only]
Probab=31.38 E-value=72 Score=22.91 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=25.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+=|+||+.||.+.+..+.++..+-..-.+...
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~ 34 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYS 34 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeee
Confidence 34789999999999999999887666555544
No 204
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=30.71 E-value=1.7e+02 Score=19.57 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=34.6
Q ss_pred ecccCCCchhHHHHH-HH------HHcCCCceeEeccCCCCCCCChhhhh----hCCCCCcCeEe---cCCeeeehH
Q 028176 4 LFSYWRSSCSHRVRI-GL------NLKGLEYEYKAVNLVKGEQFSPDFLK----INPIGYVPALV---DGDFVVSDS 66 (212)
Q Consensus 4 L~~~~~s~~~~~vr~-~l------~~~~i~~~~~~~~~~~~~~~~~~~~~----~~p~~~vP~l~---~~g~~i~es 66 (212)
.++..+|++|++..- .+ ...+-.|..+.+|..........+.+ ....+-+|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 457789999997742 22 22234677778875432111111111 12234578888 457777765
No 205
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=30.68 E-value=1.9e+02 Score=20.15 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=32.4
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCCceeEeccCCCCCCCChhhhhhCCC------CCcCeEe--cCCeeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI------GYVPALV--DGDFVVS 64 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~------~~vP~l~--~~g~~i~ 64 (212)
..|+.++|+.|....-.++. .+-.+++..++... .++..+...- .++|++. .+|..+.
T Consensus 52 V~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 52 VEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 35667789999866644432 22335556666433 2333322222 2489988 6776654
No 206
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=30.17 E-value=64 Score=20.13 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=31.2
Q ss_pred eecccCCCchhHHHHHHHHHcCC----CceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 3 KLFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
..|+.++|+.|+...-.+....- .+.+..++... ...+.+...-..+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 45677889999876555533211 24455565432 23444444456789887 4554
No 207
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=29.87 E-value=1.2e+02 Score=18.55 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHHhcCCC--CCCcchHHHHHHHHh
Q 028176 129 AKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD--MTQFPLLLRLHEAYS 193 (212)
Q Consensus 129 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~--~~~~p~l~~w~~~~~ 193 (212)
+..+++..=...+-.... .+|+.. +++ |+..|+++.++ ...+.+ .++--++..|++++.
T Consensus 16 il~Qie~YdNli~~vVe~--~ky~t~--l~~-DvL~~~ll~~L-~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 16 ILSQIESYDNLIEPVVES--LKYFTD--LGY-DVLTFCLLERL-SNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHhhhhHHHHHHH--Hhhcch--hhH-HHHHHHHHHHH-hcccchhcCcCCCCHHHHHHHHh
Confidence 334444333333333333 456643 443 99999999988 422322 244578999998875
No 208
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=29.79 E-value=1e+02 Score=20.38 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=33.1
Q ss_pred cccCCCchhHHHHHHHHHcCCC----ceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 5 FSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 5 ~~~~~s~~~~~vr~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
|+..+||.|+.+.=.++..--. .....+|... .+++.+..--..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~----~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE----VPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC----CHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5677899898665555332211 3445566432 34555555556799999 677655
No 209
>PRK09381 trxA thioredoxin; Provisional
Probab=28.99 E-value=1.5e+02 Score=18.61 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=32.4
Q ss_pred eecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
..|+.++||.|+...-.++. .+-.+.+..++... ...+.+...-..+|++. .+|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 34567789999977644432 22235556666432 23333333456789887 566543
No 210
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.41 E-value=75 Score=22.50 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.6
Q ss_pred eeecccCCCchhHHHH----HHHHHc-CCCceeEeccCC
Q 028176 2 LKLFSYWRSSCSHRVR----IGLNLK-GLEYEYKAVNLV 35 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr----~~l~~~-~i~~~~~~~~~~ 35 (212)
+++|+...||||.... -+++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 5788888999998544 444455 888888888743
No 211
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=28.23 E-value=68 Score=20.22 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=30.4
Q ss_pred eecccCCCchhHHHHHHHHH----cC-CCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL----KG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~----~~-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
..|+.++|+.|+...-.+.. .+ -...+..++.. ..+..+..--..+|++. .+|..+
T Consensus 22 v~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 22 VDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 35677889999976655532 22 12334445432 22333333356779877 566543
No 212
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.96 E-value=64 Score=21.36 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCceeEeccCCCCCCCChhhhhhCC-CCCcCeEec---CCeeeehHHHHHHHHHHhC
Q 028176 14 HRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP-IGYVPALVD---GDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 14 ~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~---~g~~i~es~~I~~yl~~~~ 77 (212)
.-++=+.+..|++.+....+...+ ...+-....| .|..|+++| --.+.-|..-|+.||.++-
T Consensus 26 ~LakEl~e~~g~~I~~~r~~~~~~--l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 26 ALAKELEEEEGISIEGYRLDEEQV--LEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhccCCCceeeeechhhhh--hhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 345556677888887666552221 0011111233 388899884 3466778888999998873
No 213
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=27.69 E-value=45 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.6
Q ss_pred cchHHHHHHHHhCChhhhh
Q 028176 182 FPLLLRLHEAYSKLPAFQN 200 (212)
Q Consensus 182 ~p~l~~w~~~~~~~~~~~~ 200 (212)
.-.|++|++|+.++|.+..
T Consensus 111 r~~LqrfL~RV~~hP~L~~ 129 (140)
T cd06891 111 KANLQRWFNRVCSDPILIR 129 (140)
T ss_pred HHHHHHHHHHHhCChhhcc
Confidence 4678999999999987653
No 214
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=26.37 E-value=1e+02 Score=19.82 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=32.1
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i~ 64 (212)
..|+.++|+.|..+.-.++. .++ .+..++... . ++.+......+|++. .+|..+.
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v--~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPET--KFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCc--EEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 35677889999876655543 233 344555321 1 333333446789998 6776543
No 215
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=25.95 E-value=1.6e+02 Score=17.81 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=31.2
Q ss_pred eecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
..|+.++|+.|+...-.+.. .+-.+.+..++.. ....+.+..-...+|++. .+|.
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 35567789999877655533 2223555556533 233443333345789888 4554
No 216
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=25.44 E-value=55 Score=18.84 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=15.7
Q ss_pred eeeccc----CCCchhHHHHHHHHH
Q 028176 2 LKLFSY----WRSSCSHRVRIGLNL 22 (212)
Q Consensus 2 ~~L~~~----~~s~~~~~vr~~l~~ 22 (212)
||||-+ ..|.+|.+|-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 567643 458899999998864
No 217
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=23.30 E-value=2e+02 Score=22.65 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHH
Q 028176 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAA 171 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~ 171 (212)
.+.+.+..||.+-......---|.++|+||+.++.-...+
T Consensus 73 ~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAi 112 (297)
T cd08200 73 ELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAV 112 (297)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHH
Confidence 3556666666655442111223457999999888877666
No 218
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=22.56 E-value=5.8 Score=25.33 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=24.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCCceeEeccCCC
Q 028176 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK 36 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~ 36 (212)
+++|+...+|..-.+..+++-.||+..++.....+
T Consensus 51 ieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~~~v~N 85 (115)
T PF04705_consen 51 IEVYGSDGSPVPPELLAACRQRGIPVRLVDSAVVN 85 (115)
T ss_dssp EEEEEETTS---CCCCHHHHCTT--EEEE-HHHHC
T ss_pred EEEeeecCCCCChHHHHHHHhcCCceEEecHHHHH
Confidence 57899999999999999999999999988776554
No 219
>PRK09266 hypothetical protein; Provisional
Probab=22.32 E-value=77 Score=24.21 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHHHcCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEecCCeeeehHHHHHHHHHHhC
Q 028176 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 19 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~i~es~~I~~yl~~~~ 77 (212)
.+...|++++...+.+.+-....+-|.--+-.+-+||...|+..+.+...|.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 44566899888888754322222233322335889999977776654456766666655
No 220
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=21.26 E-value=3.6e+02 Score=20.21 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=31.8
Q ss_pred eecccCCCchhHHHHHHHHHc----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~i 63 (212)
..||.++|+.|+...-.++.. +-.+.+..+|.. ...++.+...-..+|++. .+|..+
T Consensus 57 V~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~----~~~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 57 VKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT----RALNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc----ccHHHHHHcCCCcCCEEEEEECCEEE
Confidence 456778899998665444331 212334444432 234455444456789888 666543
No 221
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.97 E-value=1.4e+02 Score=15.27 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=19.0
Q ss_pred CCCcCeEecCCeeeehHHHHHHHHH
Q 028176 50 IGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 50 ~~~vP~l~~~g~~i~es~~I~~yl~ 74 (212)
.|.+|....++........|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678887766777888888888765
No 222
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=20.91 E-value=1.1e+02 Score=20.17 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=18.8
Q ss_pred CCCcCeEe-cCCeeeehHHHHHHHHH
Q 028176 50 IGYVPALV-DGDFVVSDSFAILMYLE 74 (212)
Q Consensus 50 ~~~vP~l~-~~g~~i~es~~I~~yl~ 74 (212)
..++|+++ |+..++.+...|.+-+.
T Consensus 81 i~k~PAVVfD~~~VVYG~tDV~~A~~ 106 (114)
T PF07511_consen 81 ITKYPAVVFDDRYVVYGETDVARALA 106 (114)
T ss_pred ccccCEEEEcCCeEEecccHHHHHHH
Confidence 35899999 66778888887766554
No 223
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=20.90 E-value=1.7e+02 Score=16.54 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCCCccccCCc-hHHHHh
Q 028176 135 KGFAALEKLLKDYAGKYATGDEV-FLADLY 163 (212)
Q Consensus 135 ~~l~~le~~L~~~~~~~l~G~~~-t~aD~~ 163 (212)
+..+.|.+.+.. +.|-.|+++ |..+++
T Consensus 4 ~i~~~l~~~I~~--g~~~~g~~lps~~~la 31 (64)
T PF00392_consen 4 QIYDQLRQAILS--GRLPPGDRLPSERELA 31 (64)
T ss_dssp HHHHHHHHHHHT--TSS-TTSBE--HHHHH
T ss_pred HHHHHHHHHHHc--CCCCCCCEeCCHHHHH
Confidence 445566666766 688899987 888874
No 224
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.59 E-value=1.2e+02 Score=17.88 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=25.1
Q ss_pred ecccCCCchhHHHHHHHHHcCCCceeEecc
Q 028176 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 4 L~~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+..|.....+.++.-.|...|+++++.+++
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 345677888999999999999999888776
No 225
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=20.53 E-value=90 Score=22.13 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=12.8
Q ss_pred CCeeee--hHHHHHHHHHHhCCCCCCCCC
Q 028176 59 GDFVVS--DSFAILMYLEEKYPQPPLLPS 85 (212)
Q Consensus 59 ~g~~i~--es~~I~~yl~~~~~~~~l~p~ 85 (212)
.|..|+ |-.+|++||.+.+| |.|+
T Consensus 47 hGl~Is~eer~avVkYLAd~~G---Lap~ 72 (167)
T PF09098_consen 47 HGLPISPEERRAVVKYLADTQG---LAPS 72 (167)
T ss_dssp C-----HHHHHHHHHHHHHHT------CG
T ss_pred cCCCCCHHHHHHHHHHHHHccC---CCch
Confidence 344443 45889999999998 5553
No 226
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=20.53 E-value=1e+02 Score=19.24 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=30.2
Q ss_pred eecccCCCchhHHHHHHHHHc----CCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCC
Q 028176 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGD 60 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g 60 (212)
..|+.++|+.|+...=.++.. +-.+.+..++.. ...++.+...-..+|++. .+|
T Consensus 24 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 24 VDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEEEEcCC
Confidence 456778899998765444322 212444455532 234444444456789888 454
No 227
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=20.35 E-value=1.4e+02 Score=18.26 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=31.3
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCC-CceeEeccCCCCCCCChhhhhhCCCCCcCeEe--cCCe
Q 028176 2 LKLFSYWRSSCSHRVRIGLNL-----KGL-EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~L~~~~~s~~~~~vr~~l~~-----~~i-~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~ 61 (212)
+.+|+.++|+.|+...-.+.. .+- .+....++.. ....+........+|++. .+|.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEEEecCCC
Confidence 467788899999875444422 221 1334444432 234554444466789886 4444
No 228
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=20.35 E-value=1.2e+02 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=28.4
Q ss_pred hCCCCCcCeEe-cCCeeeehHHHHHHHHHHhCCCCCCCC
Q 028176 47 INPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPPLLP 84 (212)
Q Consensus 47 ~~p~~~vP~l~-~~g~~i~es~~I~~yl~~~~~~~~l~p 84 (212)
-+|..+.|++. .||...+++.-|-+-+++..-++.+-|
T Consensus 92 y~~~~k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~p 130 (299)
T COG2382 92 YNPLEKYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPP 130 (299)
T ss_pred CCccccccEEEEeccHHHHhcCChHHHHHHHHHcCCCCC
Confidence 35677889999 889888888888887777665444433
No 229
>PRK15371 effector protein YopJ; Provisional
Probab=20.30 E-value=4.4e+02 Score=20.76 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHhhHHHHHHHHH-hcC-CCCCCcchHHHHHHHHh
Q 028176 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN-RFN-LDMTQFPLLLRLHEAYS 193 (212)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~-~~~-~~~~~~p~l~~w~~~~~ 193 (212)
...+++...++.||+.+++ +.|+ -...+..|+-..+.+..... +.+ ..+.-+..-...++.+.
T Consensus 23 ~~~~~L~~~i~~le~~~~~--G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIAD--GSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHc--CCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHH
Confidence 4567789999999999998 6777 44589999999999987732 222 22333334445555544
No 230
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=20.18 E-value=2.2e+02 Score=19.32 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=31.2
Q ss_pred eecccCCCchhHHHHHHHHH----cCCCceeEeccCCCCCCCChhhhhhCCCCCcCeEe--c-CCeee
Q 028176 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--D-GDFVV 63 (212)
Q Consensus 3 ~L~~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~-~g~~i 63 (212)
..|+..+|+.|....=.+.. .+-.+.+..++.... ....+........+|++. + +|..+
T Consensus 25 V~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 25 VEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 34567789999876655532 222344555554321 112333333345689887 3 46544
Done!