BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028177
MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQ
PIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQV
LDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSL
AASTLIASYLITVPKQRWEFPILPWGKYFFPL

High Scoring Gene Products

Symbol, full name Information P value
CYCJ18
cyclin J18 		protein from Arabidopsis thaliana 1.3e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028177
        (212 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1009023203 - symbol:CYCJ18 "cyclin J18" specie...   630  1.3e-61   1


>TAIR|locus:1009023203 [details] [associations]
            symbol:CYCJ18 "cyclin J18" species:3702 "Arabidopsis
            thaliana" [GO:0005739 "mitochondrion" evidence=ISM] [GO:0051726
            "regulation of cell cycle" evidence=TAS] EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0051301 GO:GO:0007049 GO:GO:0051726
            EMBL:AC007069 Gene3D:1.10.472.10 InterPro:IPR013763
            InterPro:IPR006671 Pfam:PF00134 SMART:SM00385 SUPFAM:SSF47954
            PROSITE:PS00292 EMBL:AF331758 IPI:IPI00534933 RefSeq:NP_001030944.1
            UniGene:At.18921 ProteinModelPortal:Q9C5X2
            EnsemblPlants:AT2G01905.1 GeneID:3768365 KEGG:ath:AT2G01905
            TAIR:At2g01905 eggNOG:NOG238912 HOGENOM:HOG000239889 OMA:EFPILPW
            PhylomeDB:Q9C5X2 ProtClustDB:CLSN2681381 Genevestigator:Q9C5X2
            Uniprot:Q9C5X2
        Length = 234

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 125/198 (63%), Positives = 155/198 (78%)

Query:    10 RLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQL 69
             RL+EF+IQS   LE+ PIVKYSALSLF DRF P+L R+      + +WLLQP+ ESNLQL
Sbjct:    11 RLVEFLIQSTTLLELPPIVKYSALSLFFDRFRPNLVRFLQKKKAE-HWLLQPLNESNLQL 69

Query:    70 FALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSN 129
             F LI++WIS K+H +R +SV S KS GDK+I ++ F  RDFL+AE+VF++VL FEIGT N
Sbjct:    70 FVLISIWISCKMHCTRGLSVHSLKSFGDKVITEQLFMVRDFLDAELVFLKVLKFEIGTLN 129

Query:   130 IAFXXXXXXXXQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASY 189
             IA+        QFK VAKVGE L FEACMD+MDLLYEKE+TS LY+S +SLAAS L++SY
Sbjct:   130 IAYTRLEDLLIQFKEVAKVGEQLNFEACMDMMDLLYEKEDTSLLYQSSKSLAASILVSSY 189

Query:   190 LITVPKQRWEFPILPWGK 207
             +ITVPKQ++EFPILPW K
Sbjct:   190 IITVPKQQYEFPILPWVK 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       204   0.00094  111 3  11 22  0.42    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  178 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.69u 0.18s 15.87t   Elapsed:  00:00:00
  Total cpu time:  15.69u 0.18s 15.87t   Elapsed:  00:00:00
  Start:  Fri May 10 06:21:51 2013   End:  Fri May 10 06:21:51 2013

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