Query 028177
Match_columns 212
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 11:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5q_B Gamma herpesvirus cycli 100.0 1.9E-29 6.5E-34 213.1 10.3 154 6-185 47-200 (252)
2 2f2c_A Cyclin homolog, V-cycli 100.0 3.2E-29 1.1E-33 207.6 10.6 160 6-191 50-209 (254)
3 1g3n_C V-cyclin; cyclin-depend 100.0 5.1E-29 1.7E-33 206.7 11.2 162 6-193 49-211 (257)
4 2w96_A G1/S-specific cyclin-D1 100.0 2.8E-28 9.5E-33 203.6 10.8 162 6-193 55-217 (271)
5 2b9r_A Human cyclin B1; cell c 99.9 1.2E-27 4E-32 200.6 12.4 158 6-193 36-194 (269)
6 3g33_B CCND3 protein; Ser/Thr 99.9 9.1E-28 3.1E-32 206.6 9.5 167 6-199 69-236 (306)
7 2cch_B Cyclin A2, cyclin-A; co 99.9 7.5E-28 2.6E-32 199.9 8.1 157 6-192 37-196 (260)
8 1w98_B Cyclin E, G1/S-specific 99.9 5.2E-27 1.8E-31 198.7 10.4 157 6-187 48-211 (283)
9 2i53_A Cyclin K; cell cycle, t 99.9 1.4E-25 4.6E-30 184.0 9.0 178 7-207 40-227 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.9 1.1E-24 3.9E-29 179.3 10.4 161 7-193 30-203 (257)
11 2pk2_A Cyclin-T1, protein TAT; 99.9 2.3E-23 8E-28 183.5 6.5 160 7-192 37-209 (358)
12 1zp2_A RNA polymerase II holoe 99.9 1.8E-22 6.1E-27 165.1 8.7 160 7-192 27-189 (235)
13 3rgf_B Cyclin-C; protein kinas 99.9 2.8E-22 9.5E-27 169.9 8.4 167 7-198 42-218 (285)
14 1jkw_A Cyclin H; cell cycle, c 99.8 1.5E-20 5.1E-25 162.8 9.6 166 6-198 55-231 (323)
15 1c9b_A General transcription f 99.6 1.2E-15 4.1E-20 122.0 10.9 157 5-194 2-159 (207)
16 1ais_B TFB TFIIB, protein (tra 99.2 1.6E-11 5.4E-16 97.4 8.2 158 5-195 6-166 (200)
17 3k7a_M Transcription initiatio 98.6 2.4E-08 8.2E-13 87.2 3.5 153 9-194 127-292 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 97.6 6.7E-05 2.3E-09 66.7 5.3 99 11-130 77-175 (293)
19 4bbr_M Transcription initiatio 97.0 0.00076 2.6E-08 59.4 5.4 150 11-194 129-292 (345)
20 1ais_B TFB TFIIB, protein (tra 57.2 13 0.00046 28.8 4.5 54 65-126 145-198 (200)
21 1sxe_A Transcriptional regulat 44.1 8.9 0.0003 28.7 1.5 24 4-27 28-51 (97)
22 3mtu_A Tropomyosin alpha-1 cha 41.9 22 0.00076 25.3 3.2 17 154-170 54-70 (75)
23 1x66_A Friend leukemia integra 38.0 9.7 0.00033 28.5 0.8 24 4-27 25-48 (98)
24 2qar_B Telsam domain; polymer, 36.1 17 0.00057 26.9 1.9 24 4-27 13-36 (93)
25 1sv0_A ETS DNA-binding protein 33.5 20 0.00067 26.2 1.9 24 4-27 11-34 (85)
26 1sxd_A GA repeat binding prote 32.9 20 0.00069 26.4 1.9 24 4-27 24-47 (91)
27 2jv3_A ETS1 proto-oncogene; ET 31.6 19 0.00065 27.5 1.6 24 4-27 42-65 (110)
28 1ji7_A ETS-related protein TEL 29.8 25 0.00085 25.8 1.9 24 4-27 13-36 (89)
29 2ytu_A Friend leukemia integra 29.0 17 0.00059 28.6 1.0 24 4-27 39-62 (128)
30 2dkx_A SAM pointed domain-cont 27.7 13 0.00043 27.7 -0.0 24 4-27 25-48 (96)
31 2qb0_B Telsam domain - lysozym 26.9 27 0.00093 29.1 1.9 24 4-27 13-36 (241)
32 1sv0_C Modulator of the activi 24.7 31 0.0011 24.6 1.6 22 4-25 12-33 (82)
33 3tq7_B Microtubule-associated 23.1 26 0.00088 25.9 0.9 18 153-170 45-62 (82)
No 1
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.9e-29 Score=213.06 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|+++||||++++++++++|+|.|+||+| +|||++.. ++.+.+|||+|++|+|||||+||+.
T Consensus 47 ~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~-lDRfLs~~----------------~v~~~~lqLvg~tcl~iAsK~eE~~ 109 (252)
T 1f5q_B 47 QYRKVLTTWMFCVCKDLRQDNNVFPLAVAL-LDELFLST----------------RIDRENYQSTAAVALHIAGKVRAYM 109 (252)
T ss_dssp SHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHS----------------CCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHHHhcCC----------------CcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999999999 99999983 4789999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
||++++|.. +||+.||++|+++||..+|+.|+|+++. ||++.||+.++.....-.+.-..+ ...|..++++--
T Consensus 110 p~~~~~l~~-----~~~~~yt~~~i~~mE~~IL~~L~w~l~~-pTp~~FL~~~l~~~~~~~~~~~~~-~~~a~~~l~~~l 182 (252)
T 1f5q_B 110 PIKATQLAY-----LCGGATTADKLLTLEVKSLDTLSWVADR-CLSTDLICYILHIMHAPREDYLNI-YNLCRPKIFCAL 182 (252)
T ss_dssp CCCHHHHHH-----HHCTTCCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHCCCccCC-CCHHHHHHHHHHHcCCCcchHHHH-HHHHHHHHHHHH
Confidence 999999995 9999999999999999999999999995 999999999965543222211111 112222222211
Q ss_pred hcccceeeecCccchhhhhh
Q 028177 166 EKEETSTLYRSPRSLAASTL 185 (212)
Q Consensus 166 e~e~ts~l~~sp~slaas~l 185 (212)
- |..++--.|..+|||..
T Consensus 183 ~--d~~~l~~~PS~iAaaa~ 200 (252)
T 1f5q_B 183 C--DGRSAMKRPVLITLACM 200 (252)
T ss_dssp H--CHHHHTSCHHHHHHHHH
T ss_pred h--chhhhccCHHHHHHHHH
Confidence 1 23344557777787773
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.96 E-value=3.2e-29 Score=207.60 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++.+++++|+|.|+|++| +|||++. + ++++.++||+|++|+|||||+||..
T Consensus 50 ~~R~~lvdwl~~v~~~~~l~~etl~lAv~~-~DRfls~--~--------------~v~~~~lqLv~~acl~iA~K~eE~~ 112 (254)
T 2f2c_A 50 DNRTILLTWMHLLCESFELDKSVFPLSVSI-LDRYLCK--K--------------QGTKKTLQKIGAACVLIGSKIRTVK 112 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHTTT--S--------------CCCTTTHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHH-HHHHHcc--C--------------CcCHHHccHHHHHHHHHHHHhcccC
Confidence 469999999999999999999999999999 9999998 3 4788999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
||++++|.. ++|+.||++|+++||..+|+.|+|+++ .|+++.||++++...+.-.+.-+.+ -..|..++++-.
T Consensus 113 ~p~~~d~~~-----~~~~~~~~~~i~~mE~~IL~~L~~~l~-~~tp~~fl~~~~~~~~~~~~~~~~~-~~~a~~ll~~~l 185 (254)
T 2f2c_A 113 PMTVSKLTY-----LSCDCFTNLELINQEKDILEALKWDTE-AVLATDFLIPLCNALKIPEDLWPQL-YEAASTTICKAL 185 (254)
T ss_dssp CCCHHHHST-----TC---CCHHHHHHHHHHHHHHTTTCCC-CCCGGGSHHHHHHHTTCCGGGHHHH-HHHHHHHHHHHT
T ss_pred CCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHCCCcCC-CCCHHHHHHHHHHHcCCChhhHHHH-HHHHHHHHHHHH
Confidence 999999995 999999999999999999999999999 4999999999966553212211111 134556666443
Q ss_pred hcccceeeecCccchhhhhhhhhhhe
Q 028177 166 EKEETSTLYRSPRSLAASTLIASYLI 191 (212)
Q Consensus 166 e~e~ts~l~~sp~slaas~lv~~y~~ 191 (212)
- |...+-.+|..+||+.+..+-.+
T Consensus 186 ~--d~~~~~~~PS~iAaAai~la~~~ 209 (254)
T 2f2c_A 186 I--QPNIALLSPGLICAGGLLTTIET 209 (254)
T ss_dssp T--SGGGTTSCHHHHHHHHHHHHHHT
T ss_pred c--CcchhccCHHHHHHHHHHHHHHh
Confidence 2 33355678888877765555444
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=5.1e-29 Score=206.67 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|+++||||++++.+++++|+|.|+|++| +|||++. + ++++.++||+|++|+|||||+||+.
T Consensus 49 ~~R~~lvdwl~ev~~~~~l~~etl~lAv~~-~DRfls~--~--------------~v~~~~lqLv~~acl~iA~K~eE~~ 111 (257)
T 1g3n_C 49 HMRKLLGTWMFSVCQEYNLEPNVVALALNL-LDRLLLI--K--------------QVSKEHFQKTGSACLLVASKLRSLT 111 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTT--C--------------CCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHcc--C--------------CCCHHHHHHHHHHHHHHHHHHcccc
Confidence 469999999999999999999999999999 9999998 3 4889999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
||++++|+. ++|+.||++|+++||..+|+.|+|+++. |+++.||+.++...+.-.+.-+.+ ...+..++++-.
T Consensus 112 ~p~~~d~~~-----~~~~~~~~~~i~~mE~~iL~~L~~~l~~-~tp~~fl~~~~~~~~~~~~~~~~~-~~~a~~~le~~l 184 (257)
T 1g3n_C 112 PISTSSLCY-----AAADSFSRQELIDQEKELLEKLAWRTEA-VLATDVTSFLLLKLVGGSQHLDFW-HHEVNTLITKAL 184 (257)
T ss_dssp CCCHHHHHH-----HTTTCSCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHHHHSCSSTTHHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHH-----HHCCCCCHHHHHHHHHHHHHHCCCcCCC-CCHHHHHHHHHHHcCCChhHHHHH-HHHHHHHHHHHH
Confidence 999999995 8999999999999999999999999994 999999999966543222211111 123555665433
Q ss_pred hcccceeeecCccchhhhhhh-hhhheec
Q 028177 166 EKEETSTLYRSPRSLAASTLI-ASYLITV 193 (212)
Q Consensus 166 e~e~ts~l~~sp~slaas~lv-~~y~~tv 193 (212)
- |...+-.+|..+||+.+. +.....+
T Consensus 185 ~--d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 185 V--DPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp T--STTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred h--CcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 2 333556788888766554 4455544
No 4
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.95 E-value=2.8e-28 Score=203.63 Aligned_cols=162 Identities=16% Similarity=0.315 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++++++++++|.|+|++| +|||++.. ++.+.++||+|++|+|||||+||+.
T Consensus 55 ~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~-lDRfls~~----------------~v~~~~lqlv~~acL~iAsK~EE~~ 117 (271)
T 2w96_A 55 SMRKIVATWMLEVCEEQKCEEEVFPLAMNY-LDRFLSLE----------------PVKKSRLQLLGATCMFVASKMKETI 117 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHTTS----------------CCCTTTHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHCCchhHHHHHHHH-HHHhCCcC----------------CcCHHHHHHHHHHHHHHHHHHhhcC
Confidence 469999999999999999999999999999 99999984 3778899999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
|+++++|+. ++|+.||++|+++||..+|+.|+|+++. |+++.||++++...+.-.+.-+++. ..|..++++--
T Consensus 118 p~~~~~~~~-----~~~~~~~~~eI~~mE~~IL~~L~~~l~~-~tp~~fl~~~~~~l~~~~~~~~~~~-~~a~~~l~~~~ 190 (271)
T 2w96_A 118 PLTAEKLCI-----YTDNSIRPEELLQMELLLVNKLKWNLAA-MTPHDFIEHFLSKMPEAEENKQIIR-KHAQTFVALCA 190 (271)
T ss_dssp CCCHHHHHH-----HTTTSSCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHHTSCCCHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHCCCccCC-CCHHHHHHHHHHHcCCCchHHHHHH-HHHHHHHHHHH
Confidence 999999995 8999999999999999999999999994 9999999999665543233322221 24556666432
Q ss_pred hcccceeeecCccchhhh-hhhhhhheec
Q 028177 166 EKEETSTLYRSPRSLAAS-TLIASYLITV 193 (212)
Q Consensus 166 e~e~ts~l~~sp~slaas-~lv~~y~~tv 193 (212)
.|..++-.+|..+||+ +.+|.....+
T Consensus 191 --~d~~~~~~~PS~iAaAai~lA~~~l~~ 217 (271)
T 2w96_A 191 --TDVKFISNPPSMVAAGSVVAAVQGLNL 217 (271)
T ss_dssp --TSTHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhccCHHHHHHHHHHHHHHHhCc
Confidence 2344455688889655 4556665554
No 5
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.95 E-value=1.2e-27 Score=200.58 Aligned_cols=158 Identities=20% Similarity=0.352 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++++++++++|.|+|++| +|||++.. ++.+.++||+|++|+|||||+||..
T Consensus 36 ~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~-lDRfl~~~----------------~v~~~~lqlv~~acL~iA~K~eE~~ 98 (269)
T 2b9r_A 36 NMRAILIDWLVQVQMKFRLLQETMYMTVSI-IDRFMQNN----------------SVPKKMLQLVGVTAMFIASKYEEMY 98 (269)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHTTS----------------CCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHhcCC----------------CCcHHHhhHHHHHHHHHHHhccccc
Confidence 469999999999999999999999999999 99999983 4788999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
||++++|.. ++|+.||++|+++||..+|+.|+|+++. |+++.||+++ .+..+.+. +. -..|..++++-.
T Consensus 99 ~p~~~d~~~-----~~~~~~~~~eI~~mE~~IL~~L~f~l~~-~tp~~fl~~~-~~~~~~~~--~~--~~~a~~l~e~sl 167 (269)
T 2b9r_A 99 PPEIGDFAF-----VTDNTYTKHQIRQMEMKILRALNFGLGR-PLPLHFLRRA-SKIGEVDV--EQ--HTLAKYLMELTM 167 (269)
T ss_dssp CCCHHHHHH-----HTCSSSCHHHHHHHHHHHHHHTTSCCCC-CCHHHHHHHH-HHSSCCCH--HH--HHHHHHHHHHGG
T ss_pred CccHHHHHH-----HhcCCCCHHHHHHHHHHHHHHcCCccCC-CCHHHHHHHH-HHhcCCCH--HH--HHHHHHHHHHHH
Confidence 999999996 8999999999999999999999999995 9999999998 44444332 11 134777888766
Q ss_pred hcccceeeecCccchhhhhh-hhhhheec
Q 028177 166 EKEETSTLYRSPRSLAASTL-IASYLITV 193 (212)
Q Consensus 166 e~e~ts~l~~sp~slaas~l-v~~y~~tv 193 (212)
...+ .+-.+|..+||+.+ ++......
T Consensus 168 ~~~~--~~~~~Ps~iAaAai~lA~~~l~~ 194 (269)
T 2b9r_A 168 LDYD--MVHFPPSQIAAGAFSLALKILDN 194 (269)
T ss_dssp GCGG--GSSSCTTHHHHHHHHHHHHHHTC
T ss_pred hhhh--hhcCCHHHHHHHHHHHHHHHhCC
Confidence 4333 45678999966555 45444433
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.94 E-value=9.1e-28 Score=206.56 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++.+++++++|.|+|++| +|||++. + ++.+.++||+|++|+|||||+||+.
T Consensus 69 ~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~-lDRfls~--~--------------~v~~~~lqLv~~tcL~lAsK~eE~~ 131 (306)
T 3g33_B 69 HMRKMLAYWMLEVCEEQRCEEEVFPLAMNY-LDRYLSC--V--------------PTRKAQLQLLGAVCMLLASKLRETT 131 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHH--C--------------CCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCcHhHHHHHHHH-HHHHHhc--C--------------CCcHHHHHHHHHHHHHHHHHhccCC
Confidence 469999999999999999999999999999 9999988 3 4889999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY 165 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly 165 (212)
||++++|.. ++|+.||++|+++||..+|+.|+|+++ .|+++.||+.++..++.-.+..+.+.- .+..++++-.
T Consensus 132 p~~~~~l~~-----~~~~~~~~~~i~~mE~~IL~~L~f~l~-~~tp~~fl~~~l~~l~~~~~~~~~~~~-~a~~~l~lsl 204 (306)
T 3g33_B 132 PLTIEKLCI-----YTDHAVSPRQLRDWEVLVLGKLKWDLA-AVIAHDFLAFILHRLSLPRDRQALVKK-HAQTFLALCA 204 (306)
T ss_dssp CCCTTHHHH-----HTTTSSCHHHHHHHHHHHHHHTTTCCC-CCCGGGGHHHHHHTSSCCTTTHHHHHH-HHHHHHHHHH
T ss_pred CCCHHHHHH-----HhccCccHHHHHHHHHHHHHHcCCccC-CCCHHHHHHHHHHHcCCChhHHHHHHH-HHHHHHHHHH
Confidence 999999995 899999999999999999999999999 599999999996655433232222222 2233444322
Q ss_pred hcccceeeecCccchhh-hhhhhhhheeccccccc
Q 028177 166 EKEETSTLYRSPRSLAA-STLIASYLITVPKQRWE 199 (212)
Q Consensus 166 e~e~ts~l~~sp~slaa-s~lv~~y~~tvpkq~we 199 (212)
- +..++-..|..+|| ++.+|...+. ++..|.
T Consensus 205 ~--d~~~l~~~PS~IAaAai~lA~~~l~-~~~~w~ 236 (306)
T 3g33_B 205 T--DYTFAMYPPSMIATGSIGAAVQGLG-ACSMSG 236 (306)
T ss_dssp H--CGGGTTSCHHHHHHHHHHHHHHTCC----CCH
T ss_pred h--hhhhccCCHHHHHHHHHHHHHHHhc-CCCCch
Confidence 2 22334556777865 4555666555 444563
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.94 E-value=7.5e-28 Score=199.95 Aligned_cols=157 Identities=22% Similarity=0.366 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++.+++++++|.|+|++| +|||++.. ++.+.++||+|++|+|||||+||..
T Consensus 37 ~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~-lDRfls~~----------------~v~~~~lqlv~~acl~iA~K~ee~~ 99 (260)
T 2cch_B 37 SMRAILVDWLVEVGEEYKLQNETLHLAVNY-IDRFLSSM----------------SVLRGKLQLVGTAAMLLASKFEEIY 99 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHhccC----------------CCCHHHHhHHHHHHHHHHHHhcccC
Confidence 369999999999999999999999999999 99999983 4788999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchh-hhhhhhhHHHHHHHHHhh
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVA-KVGELLRFEACMDIMDLL 164 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~va-kvg~l~~~e~cm~imdll 164 (212)
||++++|.. ++|+.||++|+++||..+|+.|+|+++. |+++.||++++...+.-. ++. ..+..++|+-
T Consensus 100 ~~~~~d~~~-----i~~~~~~~~~i~~mE~~iL~~L~~~l~~-~tp~~fl~~~~~~l~~~~~~~~-----~~a~~l~e~s 168 (260)
T 2cch_B 100 PPEVAEFVY-----ITDDTYTKKQVLRMEHLVLKVLTFDLAA-PTVNQFLTQYFLHQQPANCKVE-----SLAMFLGELS 168 (260)
T ss_dssp CCCHHHHHH-----HTTSSSCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHTTCSSCCHHHH-----HHHHHHHHHH
T ss_pred CCCHHHHHH-----HHcCCcCHHHHHHHHHHHHHHcCCccCC-CCHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHH
Confidence 999999996 8899999999999999999999999994 999999999966544221 222 2345556652
Q ss_pred hhcccce-eeecCccchhhhhh-hhhhhee
Q 028177 165 YEKEETS-TLYRSPRSLAASTL-IASYLIT 192 (212)
Q Consensus 165 ye~e~ts-~l~~sp~slaas~l-v~~y~~t 192 (212)
.- |.. .+-.+|..+||+.+ +|.....
T Consensus 169 l~--~~~~~~~~~Ps~iAaAai~lA~~~~~ 196 (260)
T 2cch_B 169 LI--DADPYLKYLPSVIAGAAFHLALYTVT 196 (260)
T ss_dssp HH--CHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HH--hHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 21 122 44568888966654 4554443
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=5.2e-27 Score=198.72 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177 6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~ 85 (212)
..|++++|||++++++++++++|.|+|++| +|||++.. + ++++.++||+|++|+|||||+||+.
T Consensus 48 ~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~-lDRfls~~-~--------------~v~~~~lqlv~~acL~iA~K~eE~~ 111 (283)
T 1w98_B 48 KMRAILLDWLMEVCEVYKLHRETFYLAQDF-FDRYMATQ-E--------------NVVKTLLQLIGISSLFIAAKLEEIY 111 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCBHHHHHHHHHH-HHHHHHHC-C--------------CCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHhC-C--------------CCCHHHHHHHHHHHHHHHHHhcccC
Confidence 469999999999999999999999999999 99999873 1 3788999999999999999999999
Q ss_pred CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhh-h------hhHHHHH
Q 028177 86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGE-L------LRFEACM 158 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~-l------~~~e~cm 158 (212)
||++++|.. ++|+.||++|+++||..+|+.|+|+++ .|+++.||+++. +..+.++-++ + -.+..+.
T Consensus 112 ~p~l~~~~~-----i~~~~~~~~ei~~mE~~IL~~L~~~l~-~~tp~~fL~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (283)
T 1w98_B 112 PPKLHQFAY-----VTDGACSGDEILTMELMIMKALKWRLS-PLTIVSWLNVYM-QVAYLNDLHEVLLPQYPQQIFIQIA 184 (283)
T ss_dssp CCCHHHHHH-----TTTTSSCHHHHHHHHHHHHHHTTTCCC-CCCHHHHHHHHH-HHHTCCSSCCSSSCCSCHHHHHHHH
T ss_pred CCcHHHHHH-----HHcCCCCHHHHHHHHHHHHHHcCCcCC-CCCHHHHHHHHH-HHhccCchhhHHHHhhhHHHHHHHH
Confidence 999999995 899999999999999999999999999 599999999984 4344433221 0 1223345
Q ss_pred HHHHhhhhcccceeeecCccchhhhhhhh
Q 028177 159 DIMDLLYEKEETSTLYRSPRSLAASTLIA 187 (212)
Q Consensus 159 ~imdllye~e~ts~l~~sp~slaas~lv~ 187 (212)
.++|+-.- |...+-.+|..+|||.+..
T Consensus 185 ~llelsl~--d~~~l~~~PS~iAaAai~l 211 (283)
T 1w98_B 185 ELLDLCVL--DVDCLEFPYGILAASALYH 211 (283)
T ss_dssp HHHHHHHH--SGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhhcCCHHHHHHHHHHH
Confidence 56665432 2234566888887776643
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.92 E-value=1.4e-25 Score=183.98 Aligned_cols=178 Identities=16% Similarity=0.279 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCC
Q 028177 7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRP 86 (212)
Q Consensus 7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~P 86 (212)
.|+.+++|+++++.++++++.|.|+|++| +|||+.. + ++++.++|++|++|++||||+|| .|
T Consensus 40 ~R~~~~~~i~~v~~~l~l~~~t~~~A~~~-~dRf~~~--~--------------~~~~~~~qlv~~acL~lA~K~eE-~~ 101 (258)
T 2i53_A 40 YRREGARFIFDVGTRLGLHYDTLATGIIY-FHRFYMF--H--------------SFKQFPRYVTGACCLFLAGKVEE-TP 101 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTT--S--------------CTTTSCHHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHHHHHh--C--------------ChhhcCHHHHHHHHHHHHHcccc-cc
Confidence 58899999999999999999999999999 9999998 3 37788999999999999999999 58
Q ss_pred cchhhhhhcccccccCCcc------chHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchh-hhhhhhhHHHHHH
Q 028177 87 VSVKSFKSLGDKIIKDEHF------TTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVA-KVGELLRFEACMD 159 (212)
Q Consensus 87 lsV~slk~~~d~~ItDq~y------T~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~va-kvg~l~~~e~cm~ 159 (212)
++++++...+..+++|+.| +++++++||..+|+.|+|+++ .|+++.||.++....++-. +..++ ...|..
T Consensus 102 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~-~~~P~~fl~~~~~~l~~~~~~~~~~--~~~A~~ 178 (258)
T 2i53_A 102 KKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQ-VEHPYQFLLKYAKQLKGDKNKIQKL--VQMAWT 178 (258)
T ss_dssp CCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCC-CCCHHHHHHHHHHTBCSCHHHHHHH--HHHHHH
T ss_pred ccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCcee-ccChHHHHHHHHHHhCCCcchHHHH--HHHHHH
Confidence 8999999988888999888 489999999999999999999 5999999999965544211 11122 346777
Q ss_pred HHHhhhhcccceeeecCccch-hhhhhhhhhheecccccccc-c-cccccc
Q 028177 160 IMDLLYEKEETSTLYRSPRSL-AASTLIASYLITVPKQRWEF-P-ILPWGK 207 (212)
Q Consensus 160 imdllye~e~ts~l~~sp~sl-aas~lv~~y~~tvpkq~wef-p-il~w~~ 207 (212)
+++..+.+. ..+-.+|..+ ||++.+|+....++..+|+- | --||-.
T Consensus 179 l~~~s~~~~--~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~ 227 (258)
T 2i53_A 179 FVNDSLCTT--LSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWE 227 (258)
T ss_dssp HHHHHTTTT--GGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGG
T ss_pred HHHHHHcCC--chhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHH
Confidence 887776543 3456778888 55666777777777777863 1 236754
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.91 E-value=1.1e-24 Score=179.33 Aligned_cols=161 Identities=16% Similarity=0.230 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCC
Q 028177 7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRP 86 (212)
Q Consensus 7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~P 86 (212)
.|+.+++|+++++.++++++.|.|+|+.| +|||++. + ++++.++|++|++|+++|||+||. |
T Consensus 30 ~R~~~~~~i~~v~~~l~l~~~t~~~A~~~-~dRf~~~--~--------------~~~~~~~qlv~~acL~lA~K~EE~-p 91 (257)
T 2ivx_A 30 CRQQAANLIQEMGQRLNVSQLTINTAIVY-MHRFYMH--H--------------SFTKFNKNIISSTALFLAAKVEEQ-A 91 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTT--S--------------CTTTSCHHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHhh--C--------------ChhhhCHHHHHHHHHHHHhccccC-C
Confidence 48889999999999999999999999999 8999988 3 378899999999999999999999 8
Q ss_pred cchhhhhhcccc---------cccCCccc--hHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHH
Q 028177 87 VSVKSFKSLGDK---------IIKDEHFT--TRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFE 155 (212)
Q Consensus 87 lsV~slk~~~d~---------~ItDq~yT--~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e 155 (212)
++++++...+.. +++|+.|+ ++++++||..+|+.|+|+++ .|+.+.||+++....+ .++ ++ ..
T Consensus 92 ~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~-~~~P~~fl~~~~~~l~-~~~--~~--~~ 165 (257)
T 2ivx_A 92 RKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEIT-IEHPHTDVVKCTQLVR-ASK--DL--AQ 165 (257)
T ss_dssp CCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCC-CCCHHHHHHHHHHHTT-CCH--HH--HH
T ss_pred cCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceE-eeCcHHHHHHHHHHhC-CCc--HH--HH
Confidence 999999876643 57899998 99999999999999999999 5999999999965543 222 11 13
Q ss_pred HHHHHH-HhhhhcccceeeecCccchhh-hhhhhhhheec
Q 028177 156 ACMDIM-DLLYEKEETSTLYRSPRSLAA-STLIASYLITV 193 (212)
Q Consensus 156 ~cm~im-dllye~e~ts~l~~sp~slaa-s~lv~~y~~tv 193 (212)
.|..++ |-+++++ ..+-.+|..+|| ++.+|+....+
T Consensus 166 ~A~~~~~~sl~~~~--~~l~~~Ps~IAaAai~lA~~~~~~ 203 (257)
T 2ivx_A 166 TSYFMATNSLHLTT--FCLQYKPTVIACVCIHLACKWSNW 203 (257)
T ss_dssp HHHHHHHHHHHHCC--GGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccc--HHHcCCHHHHHHHHHHHHHHHhCC
Confidence 456666 3333322 234567888855 56666666443
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.88 E-value=2.3e-23 Score=183.53 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCC
Q 028177 7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRP 86 (212)
Q Consensus 7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~P 86 (212)
.|..+++||++++.+|+|++.|.|+|+.| +|||+.. + ++.+.++|+++++|+|||||+||+ |
T Consensus 37 ~R~~~v~wI~ev~~~l~L~~~t~~tAv~~-~dRFl~~--~--------------sv~~~~~qlva~acLfLA~K~EE~-p 98 (358)
T 2pk2_A 37 YRQQAANLLQDMGQRLNVSQLTINTAIVY-MHRFYMI--Q--------------SFTRFPGNSVAPAALFLAAKVEEQ-P 98 (358)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHHH-HHHHTTT--S--------------CTTTSCHHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhc--C--------------CcccccHHHHHHHHHHHHHhhccC-C
Confidence 48889999999999999999999999999 8999988 3 478899999999999999999999 8
Q ss_pred cchhhhhhcccc---------cccCCccc--hHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHH
Q 028177 87 VSVKSFKSLGDK---------IIKDEHFT--TRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFE 155 (212)
Q Consensus 87 lsV~slk~~~d~---------~ItDq~yT--~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e 155 (212)
++++++...+.. +++|+.|+ ++++++||..+|+.|+|+++ .|+.+.||+++....+ .++ ++ ..
T Consensus 99 ~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~-v~~P~~fL~~~~~~l~-~~~--~l--~~ 172 (358)
T 2pk2_A 99 KKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT-IDHPHTHVVKCTQLVR-ASK--DL--AQ 172 (358)
T ss_dssp CCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCC-CCCTTHHHHHHHHHTT-CCH--HH--HH
T ss_pred CCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCcee-CCCHHHHHHHHHHHcC-CCH--HH--HH
Confidence 999999876643 47889998 99999999999999999999 5999999999955443 222 11 13
Q ss_pred HHHHHH-HhhhhcccceeeecCccchhh-hhhhhhhhee
Q 028177 156 ACMDIM-DLLYEKEETSTLYRSPRSLAA-STLIASYLIT 192 (212)
Q Consensus 156 ~cm~im-dllye~e~ts~l~~sp~slaa-s~lv~~y~~t 192 (212)
.+..++ |.+++++ -.+-..|..+|| ++.+|+....
T Consensus 173 ~A~~ll~~sl~~t~--l~l~y~Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 173 TSYFMATNSLHLTT--FSLQYTPPVVACVCIHLACKWSN 209 (358)
T ss_dssp HHHHHHHHHTTTSC--GGGTSCHHHHTTTTTTTHHHHTT
T ss_pred HHHHHHHHHHhcCc--chhccCHHHHHHHHHHHHHHHhC
Confidence 456666 4343322 234567888855 5566666543
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.8e-22 Score=165.09 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccc-cchhHHHHHHHHHHhhhccCC
Q 028177 7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRE-SNLQLFALIALWISSKIHDSR 85 (212)
Q Consensus 7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~-snLQLf~lislwIAsK~hE~~ 85 (212)
-|+.+++|+++++.++++++.|.|+|+.| +|||+.. + ++++ .++|++|++|+++|||++| .
T Consensus 27 ~R~~~~~~i~~v~~~l~L~~~t~~~A~~~-~~Rf~~~--~--------------~~~~~~~~~lv~~acL~lA~K~Ee-~ 88 (235)
T 1zp2_A 27 DTIYQWKVVQTFGDRLRLRQRVLATAIVL-LRRYMLK--K--------------NEEKGFSLEALVATCIYLSCKVEE-C 88 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHH--C--------------CSCCCCCHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHh--c--------------ccccccCHHHHHHHHHHHHhcccc-C
Confidence 39999999999999999999999999999 9999987 3 3677 8999999999999999999 5
Q ss_pred CcchhhhhhcccccccCC-ccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhh
Q 028177 86 PVSVKSFKSLGDKIIKDE-HFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLL 164 (212)
Q Consensus 86 PlsV~slk~~~d~~ItDq-~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdll 164 (212)
|++++++...++++.+|. .|+++++++||..+|+.|+|+++ .++++.||.++... .|.++ ++ ...+..+++..
T Consensus 89 ~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~-~~~P~~~l~~~~~~-~~~~~--~~--~~~A~~~l~~s 162 (235)
T 1zp2_A 89 PVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLI-VHHPYTSLEQAFHD-GIINQ--KQ--LEFAWSIVNDS 162 (235)
T ss_dssp CCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCC-CCCTHHHHHHHHHT-TSSCH--HH--HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEE-ecChHHHHHHHHHH-cCCCH--HH--HHHHHHHHHHH
Confidence 789999998655544433 58999999999999999999999 59999999999654 23332 22 34677888776
Q ss_pred hhcccceeeecCccchhh-hhhhhhhhee
Q 028177 165 YEKEETSTLYRSPRSLAA-STLIASYLIT 192 (212)
Q Consensus 165 ye~e~ts~l~~sp~slaa-s~lv~~y~~t 192 (212)
+.+ ...+-.+|..+|| ++.+|+-...
T Consensus 163 ~~~--~~~l~~~Ps~IAaAai~lA~~~~~ 189 (235)
T 1zp2_A 163 YAS--SLCLMAHPHQLAYAALLISCCNDE 189 (235)
T ss_dssp TTT--TGGGTSCHHHHHHHHHHHHHTSCT
T ss_pred HcC--CchhccCHHHHHHHHHHHHHHhcC
Confidence 543 3345678999955 4555555443
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.86 E-value=2.8e-22 Score=169.95 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCC
Q 028177 7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRP 86 (212)
Q Consensus 7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~P 86 (212)
.|..+++|+++++.+++|++.|.|+|+.| +|||+.. + ++++.++|++|++|+++|||+||..+
T Consensus 42 ~R~~~~~~I~~v~~~l~L~~~t~~tA~~~-~~RF~~~--~--------------s~~~~~~~lva~acLfLA~K~EE~~~ 104 (285)
T 3rgf_B 42 LQIFFTNVIQALGEHLKLRQQVIATATVY-FKRFYAR--Y--------------SLKSIDPVLMAPTCVFLASKVEEFGV 104 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHH--S--------------CTTTSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHh--C--------------CchhcCHHHHHHHHHHHHHhhhcccc
Confidence 58889999999999999999999999999 9999987 3 47889999999999999999999999
Q ss_pred cchhhhhhcccc-------cccCC--ccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHH
Q 028177 87 VSVKSFKSLGDK-------IIKDE--HFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEAC 157 (212)
Q Consensus 87 lsV~slk~~~d~-------~ItDq--~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~c 157 (212)
++++++...++. +++++ .|+++++++||..+|+.|+|+++ .++.+.||+++....+ .++ ++ ...|
T Consensus 105 ~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~-v~~P~~fL~~~~~~l~-~~~--~~--~~~A 178 (285)
T 3rgf_B 105 VSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLI-VYHPYRPLLQYVQDMG-QED--ML--LPLA 178 (285)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCC-CCCSHHHHHHHHHHHT-CHH--HH--HHHH
T ss_pred ccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeE-eCChHHHHHHHHHHhC-CCH--HH--HHHH
Confidence 999999875543 34454 47999999999999999999999 5999999999966554 222 11 3456
Q ss_pred HHHHHhhhhcccceeeecCccchhh-hhhhhhhheecccccc
Q 028177 158 MDIMDLLYEKEETSTLYRSPRSLAA-STLIASYLITVPKQRW 198 (212)
Q Consensus 158 m~imdllye~e~ts~l~~sp~slaa-s~lv~~y~~tvpkq~w 198 (212)
..+++..+.+ ...+-.+|..+|| ++.+|+.....+...|
T Consensus 179 ~~~l~~sl~t--~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W 218 (285)
T 3rgf_B 179 WRIVNDTYRT--DLCLLYPPFMIALACLHVACVVQQKDARQW 218 (285)
T ss_dssp HHHHHHHTTS--SHHHHSCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHcc--ChhhccCHHHHHHHHHHHHHHHcCCChhhH
Confidence 7777776643 2345678888854 5556666655443333
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.82 E-value=1.5e-20 Score=162.80 Aligned_cols=166 Identities=15% Similarity=0.232 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHhhhcce--eccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhcc
Q 028177 6 WSWSRLMEFMIQSAHQLE--VSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHD 83 (212)
Q Consensus 6 ~~r~~LVdfLve~a~~le--l~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE 83 (212)
-.|+...+|+++++.+|+ +++.|.|+|+.| +|||+.. + ++.+.++|++|++|+++|||+||
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~-~~RF~~~--~--------------s~~~~~~~lva~acLfLA~K~EE 117 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMY-FKRFYLN--N--------------SVMEYHPRIIMLTCAFLACKVDE 117 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH-HHHHGGG--S--------------CTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHhhh--C--------------ChhhcCHHHHHHHHHHHHHhhhc
Confidence 357888999999999999 999999999999 9999987 3 47888999999999999999999
Q ss_pred CCCcchhhhhhccccccc-C---CccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHcc----chhhhhhhhhHH
Q 028177 84 SRPVSVKSFKSLGDKIIK-D---EHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFK----GVAKVGELLRFE 155 (212)
Q Consensus 84 ~~PlsV~slk~~~d~~It-D---q~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~----~vakvg~l~~~e 155 (212)
+ |+++++|... +. | +.|+++++++||..+|+.|+|+++ .++.+.||++++..++ |.....++ ..
T Consensus 118 ~-~~~l~d~v~~----~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~-v~~P~~~L~~~l~~l~~~~~~~~~~~~l--~~ 189 (323)
T 1jkw_A 118 F-NVSSPQFVGN----LRESPLGQEKALEQILEYELLLIQQLNFHLI-VHNPYRPFEGFLIDLKTRYPILENPEIL--RK 189 (323)
T ss_dssp C-CCCHHHHGGG----SSSCHHHHHHHHHHHHHHHHHHHHHTTTCCC-CCCSHHHHHHHHHHHHHHCTTCCCHHHH--HH
T ss_pred C-CCCHHHHHHH----hccChhhhHHHHHHHHHHHHHHHHHCCCcEE-cCChHHHHHHHHHHHHHHhccCCCHHHH--HH
Confidence 8 6799999862 32 2 368999999999999999999999 5999999999976653 22211111 14
Q ss_pred HHHHHHHhhhhcccceeeecCccchhhh-hhhhhhheecccccc
Q 028177 156 ACMDIMDLLYEKEETSTLYRSPRSLAAS-TLIASYLITVPKQRW 198 (212)
Q Consensus 156 ~cm~imdllye~e~ts~l~~sp~slaas-~lv~~y~~tvpkq~w 198 (212)
.|..+++..+.+. ..+-.+|..+||+ +.+|+....++-..|
T Consensus 190 ~A~~~l~~sl~t~--~~l~~~Ps~IAaAai~lA~~~~~~~~~~w 231 (323)
T 1jkw_A 190 TADDFLNRIALTD--AYLLYTPSQIALTAILSSASRAGITMESY 231 (323)
T ss_dssp HHHHHHHHHTTST--HHHHSCHHHHHHHHHHHHHHHHSCCCTTH
T ss_pred HHHHHHHHHHhcc--HHHcCCHHHHHHHHHHHHHHHcCCChHHH
Confidence 5667777665443 2345688889655 555665544433334
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.64 E-value=1.2e-15 Score=122.02 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccC
Q 028177 5 EWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDS 84 (212)
Q Consensus 5 ~~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~ 84 (212)
|-....-.+++-+.+.+|+|++.|.++|..| ++||+.. ++ ++..+.|+++.+|+++|||+||.
T Consensus 2 er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~-~~r~~~~--~~--------------~~~~~~~~v~aaclylAcK~ee~ 64 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNL-FKQVYEQ--KS--------------LKGRANDAIASACLYIACRQEGV 64 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHH--TC--------------STTSCHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhc--CC--------------cCCCCHHHHHHHHHHHHHHhcCC
Confidence 3456677899999999999999999999999 9999987 33 67778999999999999999998
Q ss_pred CCcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhh
Q 028177 85 RPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLL 164 (212)
Q Consensus 85 ~PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdll 164 (212)
|.+++++.+ +++ ++++++.++|..+++.|+|+++ .+.++.|+.++..+.+ .++ -+ -+.+.++++..
T Consensus 65 -p~~l~di~~-----~~~--~~~~~i~~~~~~ll~~L~~~l~-~~~p~~~l~r~~~~l~-l~~---~~-~~~A~~i~~~~ 130 (207)
T 1c9b_A 65 -PRTFKEICA-----VSR--ISKKEIGRCFKLILKALETSVD-LITTGDFMSRFCSNLC-LPK---QV-QMAATHIARKA 130 (207)
T ss_dssp -CCCHHHHHH-----TSS--SCHHHHHHHHHHHHHHTTCCCC-CCCTHHHHHHHHHHTT-CCH---HH-HHHHHHHHHHH
T ss_pred -CCCHHHHHH-----HHC--CCHHHHHHHHHHHHHHHCCCcC-cCCHHHHHHHHHHHCC-CCH---HH-HHHHHHHHHHH
Confidence 889999997 444 8899999999999999999998 5999999999955543 332 11 34677888877
Q ss_pred hhcccceeeecCccch-hhhhhhhhhheecc
Q 028177 165 YEKEETSTLYRSPRSL-AASTLIASYLITVP 194 (212)
Q Consensus 165 ye~e~ts~l~~sp~sl-aas~lv~~y~~tvp 194 (212)
+++ ...+=++|.++ ||++.+|+....+|
T Consensus 131 ~~~--~l~~g~~P~~IAaAaiylA~~~~~~~ 159 (207)
T 1c9b_A 131 VEL--DLVPGRSPISVAAAAIYMASQASAEK 159 (207)
T ss_dssp HHT--TCSTTCCHHHHHHHHHHHHHHTSSSC
T ss_pred HHc--CccCCCChHHHHHHHHHHHHHHHCCC
Confidence 763 33456899999 56666777766555
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.25 E-value=1.6e-11 Score=97.43 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccC
Q 028177 5 EWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDS 84 (212)
Q Consensus 5 ~~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~ 84 (212)
|-....-.+++-+.+.+|+|++.+...|..+ ++||+.. ++ +...+.+.++..|+++|||.|+
T Consensus 6 er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l-~~~~~~~--~~--------------~~gr~~~~vaaAclylAcr~~~- 67 (200)
T 1ais_B 6 ERNLAFALSELDRITAQLKLPRHVEEEAARL-YREAVRK--GL--------------IRGRSIESVMAACVYAACRLLK- 67 (200)
T ss_dssp --CHHHHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHTT--TT--------------TTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhC--CC--------------cCCCCHHHHHHHHHHHHHHHcC-
Confidence 4456678899999999999999999999999 8999987 43 4556789999999999999999
Q ss_pred CCcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCc--chHHHHHHHHHHHccchhhhhhhhhHHHHHHHHH
Q 028177 85 RPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTS--NIAFLLLEELLLQFKGVAKVGELLRFEACMDIMD 162 (212)
Q Consensus 85 ~PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~--pia~tfLeel~~qf~~vakvg~l~~~e~cm~imd 162 (212)
.|.+.+++.+. ++ ++++++.+++..+++.|+|+++ . +..+.|+.++-.+.+ .++ -+ -+.+.+|+.
T Consensus 68 ~p~~l~di~~~-----~~--v~~~~i~~~~~~l~~~L~~~~~-~~~~~p~~~i~r~~~~L~-l~~---~v-~~~A~~i~~ 134 (200)
T 1ais_B 68 VPRTLDEIADI-----AR--VDKKEIGRSYRFIARNLNLTPK-KLFVKPTDYVNKFADELG-LSE---KV-RRRAIEILD 134 (200)
T ss_dssp CCCCHHHHHHH-----TT--SCHHHHHHHHHHHHHHTTCCTT-TTCCCGGGGHHHHHHHHT-CCH---HH-HHHHHHHHH
T ss_pred CCCCHHHHHHH-----HC--CCHHHHHHHHHHHHHHhcccCC-cCCCCHHHHHHHHHHHcC-CCH---HH-HHHHHHHHH
Confidence 68999999973 33 7899999999999999999998 4 678999999955543 332 22 245666666
Q ss_pred hhhhcccceeeecCccch-hhhhhhhhhheeccc
Q 028177 163 LLYEKEETSTLYRSPRSL-AASTLIASYLITVPK 195 (212)
Q Consensus 163 llye~e~ts~l~~sp~sl-aas~lv~~y~~tvpk 195 (212)
...++. ...=++|.++ ||++.+++-...+|+
T Consensus 135 ~~~~~~--~~~gr~P~~iAaAaly~A~~~~~~~~ 166 (200)
T 1ais_B 135 EAYKRG--LTSGKSPAGLVAAALYIASLLEGEKR 166 (200)
T ss_dssp HHHHTT--CCTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcC--cccCCCHHHHHHHHHHHHHHHhCCCC
Confidence 665533 2334899999 556667776655553
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.4e-08 Score=87.22 Aligned_cols=153 Identities=11% Similarity=0.136 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCCcc
Q 028177 9 SRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVS 88 (212)
Q Consensus 9 ~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~Pls 88 (212)
......+-+.+..|+|+..+.=.|..+ ..||+.. ++ ++.-+.+.++..|+++|||.|+. |.+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~l-yk~~~~~--~~--------------~kgr~~~~vaaAclyiAcR~e~~-prt 188 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEA-YKLCHDE--KT--------------LKGKSMESIMAASILIGCRRAEV-ART 188 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHH-HHHHSSS--CS--------------SCCCCSHHHHTTTTTTTSBTTBS-SCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhc--Cc--------------ccCCcHHHHHHHHHHHHHHHcCC-Ccc
Confidence 345678888999999999999999999 7888877 33 55667899999999999999987 899
Q ss_pred hhhhhhcccccccCCccchHHHHHHHHHHHHHhh------------cccCCcchHHHHHHHHHHHccchhhhhhhhhHHH
Q 028177 89 VKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLD------------FEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEA 156 (212)
Q Consensus 89 V~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~------------FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~ 156 (212)
++++.+ +++ ++++++.++++.+++.|+ |++.. ...+.|+.++..+.+ .+ +-+ ...
T Consensus 189 l~ei~~-----~~~--v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~-~~p~~~i~Rf~~~L~-l~---~~v-~~~ 255 (345)
T 3k7a_M 189 FKEIQS-----LIH--VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-AQNLTYIPRFCSHLG-LP---MQV-TTS 255 (345)
T ss_dssp HHHHHH-----SSS--CCSHHHHHHHHHHHHHHTCC--------------------------------------------
T ss_pred HHHHHH-----HHC--CCHHHHHHHHHHHHHHHhhhhccccccccccccCC-CCHHHHHHHHHHHcC-CC---HHH-HHH
Confidence 999997 433 889999999999999999 88884 777888888844432 22 111 123
Q ss_pred HHHHHHhhhhcccceeeecCccch-hhhhhhhhhheecc
Q 028177 157 CMDIMDLLYEKEETSTLYRSPRSL-AASTLIASYLITVP 194 (212)
Q Consensus 157 cm~imdllye~e~ts~l~~sp~sl-aas~lv~~y~~tvp 194 (212)
+.+|++...+. ....=++|.++ ||+|.+++.....+
T Consensus 256 A~~i~~~~~~~--~l~~Gr~P~~IAaAaIylAa~~~~~~ 292 (345)
T 3k7a_M 256 AEYTAKKCKEI--KEIAGKSPITIAVVSIYLNILLFQIP 292 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHh--chhcCCCHHHHHHHHHHHHHHHHCCC
Confidence 34444444332 22345899999 56677777665544
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.58 E-value=6.7e-05 Score=66.65 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=80.0
Q ss_pred HHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCCcchh
Q 028177 11 LMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVK 90 (212)
Q Consensus 11 LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~PlsV~ 90 (212)
+-+|+-.....-.+++.+.-.|+-| +||+....|.+ +++..|-.=+.++|+.+|+|+.|-...+-+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvY-LdRL~~~~p~~-------------~l~~~nvHRLlLtALmlAsK~ldD~~ysN~ 142 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYY-IDLLQTVYPDF-------------TLNSLTAHRFLLTATTVATKGLCDSFSTNA 142 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH-HHHHHHHCTTC-------------CCSTTTHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhhCCCC-------------ccCCchHHHHHHHHHHHHHHhccccccChh
Confidence 3456666666667788888888877 99998765554 467778888899999999999999999999
Q ss_pred hhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcch
Q 028177 91 SFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNI 130 (212)
Q Consensus 91 slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pi 130 (212)
.+...| -++.+|+-.||+.||+.|||++.-.+-
T Consensus 143 ~wAkVg-------Gisl~ELN~LE~eFL~lLdf~L~V~~e 175 (293)
T 2pmi_B 143 HYAKVG-------GVRCHELNILENDFLKRVNYRIIPRDH 175 (293)
T ss_dssp HHHHHH-------TSCHHHHHHHHHHHHHTTTTCCSCCTT
T ss_pred Hhhhcc-------CcCHHHHHHHHHHHHHHcCCceeeCHH
Confidence 888643 478999999999999999999974443
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=97.00 E-value=0.00076 Score=59.43 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCCCcchh
Q 028177 11 LMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVK 90 (212)
Q Consensus 11 LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~PlsV~ 90 (212)
....+-+.+.+|+|+..+.=.|..+ ..|+.-. ++ ++.-+.+-++..|+++||+.|+ .|-+++
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~l-yk~a~~~--~~--------------~rGrs~e~vaAAclYiACR~~~-~prtl~ 190 (345)
T 4bbr_M 129 AFAKITMLCDAAELPKIVKDCAKEA-YKLCHDE--KT--------------LKGKSMESIMAASILIGCRRAE-VARTFK 190 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTC--TT--------------TTTCCHHHHHHHHHHHHHHHTC-CBCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHhc--CC--------------ccCCCHHHHHHHHHHHHHHhcC-CCccHH
Confidence 3455677788899988888888888 5666654 33 4444578888899999999987 588899
Q ss_pred hhhhcccccccCCccchHHHHHHHHHHHHHhhcc------------cCCcchHHHHHHHHHHHccchhhhhhhhhHHHHH
Q 028177 91 SFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFE------------IGTSNIAFLLLEELLLQFKGVAKVGELLRFEACM 158 (212)
Q Consensus 91 slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~Fe------------Igt~pia~tfLeel~~qf~~vakvg~l~~~e~cm 158 (212)
++.++.. -+++++-.+.+.+.+.|+.+ +.. .-+..|+.++ ++++| ++-+++.
T Consensus 191 eI~~~~~-------v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~-~~p~~~i~Rf------~s~L~--l~~~v~~ 254 (345)
T 4bbr_M 191 EIQSLIH-------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-AQNLTYIPRF------CSHLG--LPMQVTT 254 (345)
T ss_dssp HHHHHHT-------CCTTHHHHHHHHHHHCC-------------------------------------------------
T ss_pred HHHHHhC-------CCHHHHHHHHHHHHHHhCccccccccccccccCCC-CCHHHHHHHH------HHHcC--CcHHHHH
Confidence 8887443 46899999999999999875 332 2344566555 33443 2456666
Q ss_pred HHHHhhhhccccee-eecCccch-hhhhhhhhhheecc
Q 028177 159 DIMDLLYEKEETST-LYRSPRSL-AASTLIASYLITVP 194 (212)
Q Consensus 159 ~imdllye~e~ts~-l~~sp~sl-aas~lv~~y~~tvp 194 (212)
.-.+++....+..+ .=++|.++ ||++.+++.....+
T Consensus 255 ~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~ 292 (345)
T 4bbr_M 255 SAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIP 292 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCC
Confidence 66677666555443 35899999 55566666655443
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=57.17 E-value=13 Score=28.78 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=36.4
Q ss_pred cchhHHHHHHHHHHhhhccCCCcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccC
Q 028177 65 SNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIG 126 (212)
Q Consensus 65 snLQLf~lislwIAsK~hE~~PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIg 126 (212)
-+=.-++..|+++||+.+.. |.+.+++...++ .+..++-+.=..+.+.|+.++.
T Consensus 145 r~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~-------vs~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 145 KSPAGLVAAALYIASLLEGE-KRTQREVAEVAR-------VTEVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp SCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT-------CCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC-------CCHHHHHHHHHHHHHHcCCCCC
Confidence 34456888899999999884 567777775322 3555666665666677776553
No 21
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=44.14 E-value=8.9 Score=28.68 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+|++.+..+||.-+.++++|.++
T Consensus 28 ~~Ws~~~V~~WL~W~~~ef~L~~i 51 (97)
T 1sxe_A 28 TLWSTDHVRQWLEWAVKEYGLPDV 51 (97)
T ss_dssp TSCCHHHHHHHHHHHHHHHTCSSC
T ss_pred hccCHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999753
No 22
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=41.86 E-value=22 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhcccc
Q 028177 154 FEACMDIMDLLYEKEET 170 (212)
Q Consensus 154 ~e~cm~imdllye~e~t 170 (212)
-..+-.|+++||.+||.
T Consensus 54 ~~l~~~I~~ILYat~~~ 70 (75)
T 3mtu_A 54 DPVLQRIVDILYATDEG 70 (75)
T ss_dssp CHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHHHHhccCcC
Confidence 35689999999999986
No 23
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=9.7 Score=28.47 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+|++.+..+||.-+.++++|.++
T Consensus 25 ~~Ws~~~V~~WL~W~~~ef~L~~v 48 (98)
T 1x66_A 25 TLWTQEHVRQWLEWAIKEYSLMEI 48 (98)
T ss_dssp GGCCTTHHHHHHHHHHHHTTCCSC
T ss_pred hhcCHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999653
No 24
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=36.10 E-value=17 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+||+.+..+||..+..+|.+.++
T Consensus 13 ~~WS~~~V~~WL~w~~~ef~L~~i 36 (93)
T 2qar_B 13 IYWSRDDVAQWLKWAENEFSLSPI 36 (93)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCCC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCc
Confidence 579999999999999999988764
No 25
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=33.50 E-value=20 Score=26.18 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
-+||+....+||.-+.++++|.++
T Consensus 11 ~~Ws~~~V~~WL~W~~~ef~L~~i 34 (85)
T 1sv0_A 11 RLWSREDVLVFLRFCVREFDLPKL 34 (85)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCCC
T ss_pred hhCCHHHHHHHHHHHHHccCCCCC
Confidence 479999999999999999999664
No 26
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=32.86 E-value=20 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
-+|++.+..+||.-+.++++|.++
T Consensus 24 ~~Ws~~~V~~WL~W~~~ef~L~~v 47 (91)
T 1sxd_A 24 IHWSTDQVLHWVVWVMKEFSMTDI 47 (91)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCCS
T ss_pred hhCCHHHHHHHHHHHHHccCCCCC
Confidence 479999999999999999998753
No 27
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=31.60 E-value=19 Score=27.47 Aligned_cols=24 Identities=4% Similarity=0.422 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
-.|++.+..+||.-+.++++|.++
T Consensus 42 ~~WS~~~V~~WL~W~~~ef~L~~v 65 (110)
T 2jv3_A 42 RQWTETHVRDWVMWAVNEFSLKGV 65 (110)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCC
Confidence 379999999999999999999764
No 28
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=29.80 E-value=25 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+||+....+||..+..+|.+.++
T Consensus 13 ~~WS~~~V~~WL~w~~~ef~L~~~ 36 (89)
T 1ji7_A 13 IYWSRDDVAQWLKWAENEFSLRPI 36 (89)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCSCC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC
Confidence 589999999999999999988654
No 29
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.03 E-value=17 Score=28.64 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+|++.++.+||.-+.++++|.++
T Consensus 39 ~~WS~~~V~~WL~Wa~~ef~L~~i 62 (128)
T 2ytu_A 39 TLWTQEHVRQWLEWAIKEYSLMEI 62 (128)
T ss_dssp GGCCTTHHHHHHHHHHHHTCCCSC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999663
No 30
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.66 E-value=13 Score=27.74 Aligned_cols=24 Identities=25% Similarity=0.702 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
-.|++.+..+||.-+.+++.|.++
T Consensus 25 ~~Ws~~~V~~WL~W~~~ef~L~~i 48 (96)
T 2dkx_A 25 MDWSPSNVQKWLLWTEHQYRLPPM 48 (96)
T ss_dssp GGCCSSTHHHHHHHHHHHTTCCCC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999874
No 31
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=26.93 E-value=27 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHhhhcceeccc
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVSPI 27 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~p~ 27 (212)
.+|++.+..+||..+.+++.|.++
T Consensus 13 ~~Wt~~~V~~Wl~w~~~~f~l~~~ 36 (241)
T 2qb0_B 13 IYWSRDDVAQWLKWAENEFSLRPI 36 (241)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCSCC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999874
No 32
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=24.68 E-value=31 Score=24.58 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHhhhcceec
Q 028177 4 IEWSWSRLMEFMIQSAHQLEVS 25 (212)
Q Consensus 4 ~~~~r~~LVdfLve~a~~lel~ 25 (212)
.+||+.+..+||..+..++++.
T Consensus 12 ~~Ws~~~V~~WL~w~~~e~~l~ 33 (82)
T 1sv0_C 12 RDWTRADVWKWLINMAVSEGLE 33 (82)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999887664
No 33
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=23.05 E-value=26 Score=25.95 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhhhcccc
Q 028177 153 RFEACMDIMDLLYEKEET 170 (212)
Q Consensus 153 ~~e~cm~imdllye~e~t 170 (212)
+...|-.|+++||.+||.
T Consensus 45 ~~~~~~~I~~ILYaTeeg 62 (82)
T 3tq7_B 45 NSPVISGIIGILYATEEG 62 (82)
T ss_dssp --CHHHHHHHHHTCCC--
T ss_pred chHHHHHHHHHHhccccC
Confidence 346899999999999986
Done!