Query 028178
Match_columns 212
No_of_seqs 135 out of 1092
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 3E-49 6.5E-54 296.9 19.5 191 10-208 8-200 (201)
2 KOG1690 emp24/gp25L/p24 family 100.0 6.9E-44 1.5E-48 268.9 19.6 195 10-208 6-214 (215)
3 KOG1691 emp24/gp25L/p24 family 100.0 2E-41 4.3E-46 259.5 22.9 194 10-208 8-209 (210)
4 KOG1693 emp24/gp25L/p24 family 100.0 2.5E-40 5.5E-45 250.1 20.1 190 13-209 12-207 (209)
5 KOG3287 Membrane trafficking p 100.0 1.1E-34 2.3E-39 221.9 19.8 179 24-209 35-229 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 1E-37 2.2E-42 241.9 0.6 174 24-204 1-183 (183)
7 PF01835 A2M_N: MG2 domain; I 94.9 0.79 1.7E-05 31.4 10.3 68 42-110 13-89 (99)
8 smart00557 IG_FLMN Filamin-typ 92.5 1.3 2.9E-05 30.1 7.9 45 64-108 31-78 (93)
9 PF04151 PPC: Bacterial pre-pe 91.2 1.9 4.1E-05 27.6 7.1 61 33-104 3-68 (70)
10 PF13897 GOLD_2: Golgi-dynamic 90.1 0.55 1.2E-05 34.4 4.1 28 91-118 104-133 (136)
11 PF00630 Filamin: Filamin/ABP2 87.9 5.2 0.00011 27.1 7.8 44 64-107 41-91 (101)
12 PF05753 TRAP_beta: Translocon 85.0 8.2 0.00018 29.9 8.2 26 42-73 36-61 (181)
13 PF05738 Cna_B: Cna protein B- 84.2 3 6.5E-05 26.4 4.7 44 66-109 3-48 (70)
14 PF11589 DUF3244: Domain of un 84.0 6.1 0.00013 27.6 6.6 47 64-110 47-97 (106)
15 PF13620 CarboxypepD_reg: Carb 83.1 7.8 0.00017 25.1 6.6 46 65-110 15-60 (82)
16 PF13860 FlgD_ig: FlgD Ig-like 76.6 15 0.00032 24.2 6.2 42 44-93 12-55 (81)
17 PF09315 DUF1973: Domain of un 75.9 34 0.00074 26.4 10.8 54 66-119 42-99 (179)
18 PF07495 Y_Y_Y: Y_Y_Y domain; 75.9 16 0.00035 22.6 6.3 43 65-109 8-50 (66)
19 PRK13159 cytochrome c-type bio 74.5 12 0.00026 28.2 5.8 18 64-81 71-88 (155)
20 PRK06655 flgD flagellar basal 73.9 14 0.0003 29.7 6.4 55 45-107 114-179 (225)
21 PRK12813 flgD flagellar basal 71.6 17 0.00037 29.2 6.4 57 43-108 110-175 (223)
22 PRK13150 cytochrome c-type bio 71.3 20 0.00042 27.2 6.3 20 64-83 77-96 (159)
23 PRK12812 flgD flagellar basal 70.0 44 0.00096 27.5 8.6 55 45-107 129-194 (259)
24 PF10779 XhlA: Haemolysin XhlA 69.2 27 0.0006 22.4 7.7 20 135-154 8-27 (71)
25 TIGR03503 conserved hypothetic 66.3 89 0.0019 27.2 10.4 40 66-105 243-285 (374)
26 PRK12634 flgD flagellar basal 66.1 37 0.00081 27.2 7.3 43 64-106 121-174 (221)
27 PRK05842 flgD flagellar basal 64.4 31 0.00068 28.9 6.8 59 45-107 150-221 (295)
28 PF04728 LPP: Lipoprotein leuc 63.9 32 0.00069 21.2 5.6 28 134-161 4-31 (56)
29 PF03100 CcmE: CcmE; InterPro 63.3 27 0.00058 25.4 5.6 34 43-77 50-83 (131)
30 PF07125 DUF1378: Protein of u 62.7 13 0.00028 22.7 3.1 30 175-206 6-35 (59)
31 PRK12633 flgD flagellar basal 61.9 71 0.0015 25.7 8.3 44 64-107 128-182 (230)
32 PRK13165 cytochrome c-type bio 61.5 42 0.0009 25.5 6.4 17 65-81 78-94 (160)
33 PRK14081 triple tyrosine motif 58.7 82 0.0018 29.6 9.0 52 66-118 417-475 (667)
34 PRK13254 cytochrome c-type bio 58.2 47 0.001 24.8 6.2 15 64-78 70-84 (148)
35 PRK15396 murein lipoprotein; P 57.8 53 0.0011 21.8 5.9 45 133-177 25-69 (78)
36 PRK09619 flgD flagellar basal 57.2 43 0.00094 26.7 6.2 57 44-108 110-173 (218)
37 KOG0518 Actin-binding cytoskel 56.1 35 0.00076 33.4 6.3 47 63-109 881-930 (1113)
38 PF07835 COX4_pro_2: Bacterial 55.5 34 0.00074 19.9 4.0 29 166-194 14-42 (44)
39 PRK09973 putative outer membra 52.8 69 0.0015 21.6 5.8 47 133-179 24-70 (85)
40 PF09753 Use1: Membrane fusion 52.2 1.3E+02 0.0027 24.4 8.6 24 179-203 228-251 (251)
41 PF10648 Gmad2: Immunoglobulin 52.1 52 0.0011 22.2 5.1 40 39-82 7-46 (88)
42 PF15417 DUF4624: Domain of un 52.1 84 0.0018 22.4 8.2 76 32-119 39-121 (132)
43 PF14155 DUF4307: Domain of un 50.5 64 0.0014 22.8 5.6 42 33-80 37-78 (112)
44 PF05377 FlaC_arch: Flagella a 49.2 61 0.0013 19.9 5.7 31 135-165 2-32 (55)
45 PF08234 Spindle_Spc25: Chromo 48.1 74 0.0016 20.5 6.4 28 95-122 4-33 (74)
46 PF12690 BsuPI: Intracellular 46.8 84 0.0018 20.8 5.7 21 63-83 22-42 (82)
47 KOG2861 Uncharacterized conser 46.4 59 0.0013 28.5 5.7 55 138-198 338-392 (399)
48 PHA02650 hypothetical protein; 46.2 36 0.00077 22.5 3.3 32 171-202 42-73 (81)
49 COG5415 Predicted integral mem 46.2 1.1E+02 0.0024 24.4 6.6 30 133-162 15-44 (251)
50 COG1723 Uncharacterized conser 45.9 37 0.00081 28.7 4.3 55 138-198 271-325 (331)
51 PF00517 GP41: Retroviral enve 44.9 1.2E+02 0.0027 23.8 7.0 58 137-194 105-168 (204)
52 PF13473 Cupredoxin_1: Cupredo 44.8 72 0.0016 21.8 5.1 14 89-102 77-90 (104)
53 PRK10378 inactive ferrous ion 43.9 67 0.0015 28.0 5.7 68 23-103 30-103 (375)
54 PF05984 Cytomega_UL20A: Cytom 43.6 92 0.002 20.9 5.0 15 66-80 68-82 (100)
55 COG2372 CopC Uncharacterized p 43.2 1.3E+02 0.0028 21.9 7.9 54 65-118 60-124 (127)
56 PF05739 SNARE: SNARE domain; 43.1 76 0.0017 19.3 5.0 44 133-176 4-47 (63)
57 PF09323 DUF1980: Domain of un 43.0 40 0.00086 26.0 3.9 34 172-205 26-59 (182)
58 PF08372 PRT_C: Plant phosphor 42.0 1.5E+02 0.0033 22.4 8.3 51 132-182 51-101 (156)
59 PF13464 DUF4115: Domain of un 42.0 79 0.0017 20.4 4.7 42 66-109 8-49 (77)
60 KOG2678 Predicted membrane pro 41.9 1.8E+02 0.004 23.4 9.1 32 175-206 212-243 (244)
61 PRK14081 triple tyrosine motif 40.9 1.1E+02 0.0024 28.8 6.9 42 67-108 225-266 (667)
62 PF12669 P12: Virus attachment 40.6 30 0.00065 21.4 2.3 9 199-207 17-25 (58)
63 PF07523 Big_3: Bacterial Ig-l 40.5 91 0.002 19.4 5.2 50 65-119 17-66 (67)
64 PF14524 Wzt_C: Wzt C-terminal 40.4 78 0.0017 22.4 5.0 36 43-82 34-69 (142)
65 COG5415 Predicted integral mem 40.1 1.9E+02 0.0042 23.1 8.6 49 132-187 7-55 (251)
66 PHA03054 IMV membrane protein; 39.4 53 0.0011 21.2 3.3 28 173-200 43-70 (72)
67 PF08114 PMP1_2: ATPase proteo 39.2 40 0.00087 19.3 2.4 29 183-211 14-42 (43)
68 TIGR02223 ftsN cell division p 38.8 32 0.0007 28.9 3.0 25 6-30 26-50 (298)
69 PRK02710 plastocyanin; Provisi 38.7 1.4E+02 0.003 21.1 10.8 17 86-102 86-102 (119)
70 PF10528 PA14_2: GLEYA domain; 38.6 84 0.0018 22.2 4.7 45 31-82 58-102 (113)
71 PHA02819 hypothetical protein; 37.7 65 0.0014 20.8 3.5 29 173-201 41-69 (71)
72 PHA02975 hypothetical protein; 36.3 81 0.0017 20.3 3.7 28 174-201 40-67 (69)
73 PF04136 Sec34: Sec34-like fam 36.1 1.9E+02 0.004 21.8 6.5 49 139-187 34-82 (157)
74 PF03554 Herpes_UL73: UL73 vir 35.1 73 0.0016 21.3 3.6 28 172-199 44-71 (82)
75 PF07680 DoxA: TQO small subun 34.9 1E+02 0.0022 22.7 4.7 78 34-118 20-106 (133)
76 PF05371 Phage_Coat_Gp8: Phage 34.9 63 0.0014 19.5 2.9 23 183-205 29-51 (52)
77 PF10794 DUF2606: Protein of u 33.3 1.9E+02 0.004 20.9 7.9 25 85-109 85-109 (131)
78 PRK10234 DNA-binding transcrip 33.1 86 0.0019 22.5 4.0 36 177-212 5-40 (118)
79 cd05860 Ig4_SCFR Fourth immuno 32.8 78 0.0017 22.0 3.7 28 93-121 73-100 (101)
80 PF07172 GRP: Glycine rich pro 32.8 31 0.00067 23.7 1.6 7 15-21 15-21 (95)
81 PF13260 DUF4051: Protein of u 32.7 74 0.0016 18.9 2.9 18 186-203 9-26 (54)
82 PF07803 GSG-1: GSG1-like prot 32.7 32 0.0007 24.6 1.7 26 85-110 76-101 (118)
83 PHA02844 putative transmembran 31.9 86 0.0019 20.5 3.4 26 176-201 46-71 (75)
84 PF07888 CALCOCO1: Calcium bin 31.1 4.3E+02 0.0092 24.4 11.9 14 97-110 87-100 (546)
85 PF10754 DUF2569: Protein of u 30.8 1.6E+02 0.0034 21.8 5.3 33 179-211 54-86 (149)
86 PF06196 DUF997: Protein of un 30.3 1.3E+02 0.0027 20.0 4.2 28 178-205 44-71 (80)
87 KOG0256 1-aminocyclopropane-1- 30.3 34 0.00073 30.2 1.8 19 91-109 427-445 (471)
88 PLN00115 pollen allergen group 29.5 75 0.0016 22.8 3.2 30 1-30 1-31 (118)
89 cd05864 Ig2_VEGFR-2 Second imm 29.1 89 0.0019 19.7 3.3 25 95-119 44-69 (70)
90 PRK15036 hydroxyisourate hydro 29.0 1.9E+02 0.0042 21.2 5.4 44 65-108 43-93 (137)
91 COG2373 Large extracellular al 28.5 4.2E+02 0.0092 28.0 9.3 66 42-108 407-479 (1621)
92 PF08842 Mfa2: Fimbrillin-A as 28.2 58 0.0013 26.2 2.8 44 65-108 29-78 (283)
93 PF13715 DUF4480: Domain of un 27.9 1.7E+02 0.0038 18.9 6.9 48 65-117 16-63 (88)
94 COG2332 CcmE Cytochrome c-type 27.3 2.7E+02 0.0059 20.9 6.8 15 64-78 71-85 (153)
95 PF14584 DUF4446: Protein of u 27.1 1.4E+02 0.0031 22.4 4.5 47 129-175 35-81 (151)
96 PRK06798 fliD flagellar cappin 26.8 3.8E+02 0.0082 23.9 7.8 20 136-155 382-401 (440)
97 PF07210 DUF1416: Protein of u 26.7 2E+02 0.0044 19.3 8.6 59 43-109 7-65 (85)
98 COG4932 Predicted outer membra 26.3 4.4E+02 0.0095 27.1 8.5 99 23-122 1131-1234(1531)
99 PF09889 DUF2116: Uncharacteri 26.2 1.7E+02 0.0037 18.2 4.8 12 174-185 37-48 (59)
100 PF04678 DUF607: Protein of un 26.2 3E+02 0.0065 21.1 8.8 42 140-181 57-98 (180)
101 COG4062 MtrB Tetrahydromethano 26.1 61 0.0013 22.5 2.1 23 134-156 32-54 (108)
102 PF10805 DUF2730: Protein of u 25.9 1.6E+02 0.0035 20.5 4.4 23 130-152 32-61 (106)
103 PF11466 Doppel: Prion-like pr 25.4 90 0.002 16.5 2.2 18 1-18 1-18 (30)
104 PHA03163 hypothetical protein; 25.3 1.8E+02 0.0039 19.7 4.2 28 172-199 53-80 (92)
105 PRK13838 conjugal transfer pil 25.0 62 0.0013 24.9 2.3 11 1-11 1-11 (176)
106 PF05015 Plasmid_killer: Plasm 24.7 1.6E+02 0.0034 19.9 4.0 35 74-110 49-83 (93)
107 KOG0518 Actin-binding cytoskel 24.7 2.3E+02 0.0051 28.1 6.3 40 65-105 789-830 (1113)
108 PHA03376 BARF1; Provisional 24.1 3.7E+02 0.008 21.3 9.1 84 15-109 11-111 (221)
109 TIGR02542 B_forsyth_147 Bacter 23.9 48 0.001 23.8 1.3 15 95-109 114-128 (145)
110 PF14109 GldH_lipo: GldH lipop 23.8 1.8E+02 0.004 21.0 4.5 45 65-109 68-117 (131)
111 cd08355 Glo_EDI_BRP_like_14 Th 23.6 62 0.0014 22.2 2.0 14 67-80 105-118 (122)
112 cd04976 Ig2_VEGFR Second immun 23.6 1E+02 0.0022 19.2 2.8 25 94-118 44-69 (71)
113 PF00957 Synaptobrevin: Synapt 23.4 2.3E+02 0.0049 18.7 9.8 30 150-179 34-63 (89)
114 PF06923 GutM: Glucitol operon 23.0 1.7E+02 0.0036 20.6 4.0 32 181-212 8-39 (109)
115 PF10779 XhlA: Haemolysin XhlA 22.6 2.2E+02 0.0047 18.1 9.3 34 136-169 2-35 (71)
116 PF01519 DUF16: Protein of unk 22.5 2.8E+02 0.0061 19.4 5.3 14 130-143 34-47 (102)
117 PHA02955 hypothetical protein; 22.0 1.1E+02 0.0024 24.3 3.2 28 179-207 180-207 (213)
118 KOG3956 Alpha 2-macroglobulin 21.9 60 0.0013 27.0 1.7 24 1-24 1-25 (359)
119 PF13544 N_methyl_2: Type IV p 21.0 1.1E+02 0.0025 16.1 2.2 21 173-193 9-29 (31)
120 PF02927 CelD_N: N-terminal ig 20.9 2.7E+02 0.0058 18.6 5.5 41 66-106 35-86 (91)
121 PF10256 Erf4: Golgin subfamil 20.5 2.4E+02 0.0052 19.7 4.5 34 173-206 49-82 (118)
122 PF07116 DUF1372: Protein of u 20.4 1.6E+02 0.0034 20.6 3.2 31 171-201 6-36 (104)
123 cd09011 Glo_EDI_BRP_like_23 Th 20.4 81 0.0018 21.6 2.0 15 67-81 102-116 (120)
124 COG4467 Regulator of replicati 20.2 3.3E+02 0.0071 19.3 4.9 28 134-161 9-36 (114)
125 PHA03156 hypothetical protein; 20.1 2.6E+02 0.0056 19.0 4.1 28 172-199 52-79 (90)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-49 Score=296.87 Aligned_cols=191 Identities=39% Similarity=0.638 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhcceEEEEEeCCcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCE
Q 028178 10 LVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDK 89 (212)
Q Consensus 10 ~~~~~l~~l~~~~~al~f~i~~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~ 89 (212)
++++++|++...+..+++++.+++||+|++. .|+.+.++ |+|.+|+ .+++++.|++|+|+.+++..+.+.|+
T Consensus 8 ~vll~~L~~~~~~~~is~~ah~eeCf~e~~~-~gd~~~vs-F~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk 79 (201)
T KOG1692|consen 8 IVLLGLLFISAAGYGISLDAHEEECFFENLE-EGDKLSVS-FEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGK 79 (201)
T ss_pred HHHHHHHHHHhhheeEEEccchhhhHhhhhc-cCCEEEEE-EEEecCC------ccceeEEEECCCCchhhhcccccCce
Confidence 3445555555778888888889999999999 69999999 9999974 68999999999999999999999999
Q ss_pred EEEEcCCceeeEEEEEcCCC--CCeEEEEEEEEcccCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 90 FVFKAPRSGMYQFCFHNPTS--TPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHR 167 (212)
Q Consensus 90 ~~f~~~~~G~y~~Cf~n~~~--~~~~V~f~i~~g~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~ 167 (212)
|+|+++.+|.|++||+|..+ .||.|.|+|++|+.+++++.+++++.+++++.+.+|.+.+..++.||+|+..||.+||
T Consensus 80 ~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr 159 (201)
T KOG1692|consen 80 YTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHR 159 (201)
T ss_pred EEEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178 168 STNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA 208 (212)
Q Consensus 168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~ 208 (212)
.++|+|++||.|||++|.++||+++++|||||||||+.|+.
T Consensus 160 ~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv 200 (201)
T KOG1692|consen 160 NTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV 200 (201)
T ss_pred HhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence 99999999999999999999999999999999999999874
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-44 Score=268.89 Aligned_cols=195 Identities=21% Similarity=0.323 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCc----cccCCCCCceeEEEEcCCCc--eeee
Q 028178 10 LVIGFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHE----LFWNSDHPGIDFTVTCPDGS--IVRA 81 (212)
Q Consensus 10 ~~~~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~----~~~~~~~~~i~~~v~~p~g~--~v~~ 81 (212)
.++++|++|+..+.|++|+++ +++||++++|+ ++.+.|+ |.+.-.+ .+...++.++.+.|.+|.++ +|.+
T Consensus 6 ~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk-~tmv~G~-yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~ 83 (215)
T KOG1690|consen 6 RLLLLLLLLATQVQALYFYIAGTEKKCFIEELPK-GTMVTGN-YKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS 83 (215)
T ss_pred HHHHHHHHHHhhccEEEEEecCCcccchhhhCCC-CcEEEee-eeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence 456778888999999999996 68999999995 9999999 9987422 11123567799999999765 9999
Q ss_pred eecccCCEEEEEcCCceeeEEEEEcCCCC-----CeEEEEEEEEcccCC-CCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 028178 82 LKGTSGDKFVFKAPRSGMYQFCFHNPTST-----PEEVSFYIHIGHIPN-EHDLAKDEHLDPIYVRIAELREALETVSAE 155 (212)
Q Consensus 82 ~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-----~~~V~f~i~~g~~~~-~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~ 155 (212)
+++.++|+|+|++..+|+|+||+.+..+. ..+|.+++++|.... |.+ .+++.+.++.++..|++++.+|..|
T Consensus 84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkE 161 (215)
T KOG1690|consen 84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKE 161 (215)
T ss_pred ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988763 568999999998742 322 3566788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178 156 QRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA 208 (212)
Q Consensus 156 q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~ 208 (212)
|+++|.||+++|++.||+|+|++||+++|+++|+++|+||+.|||+||.++|.
T Consensus 162 Q~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKl 214 (215)
T KOG1690|consen 162 QNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKL 214 (215)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999874
No 3
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-41 Score=259.47 Aligned_cols=194 Identities=26% Similarity=0.486 Sum_probs=176.1
Q ss_pred HHHHHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccC
Q 028178 10 LVIGFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSG 87 (212)
Q Consensus 10 ~~~~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~ 87 (212)
+.++++++++..++|+.|+++ .++|+.|++. .|..+.|. |.+.+.... ..+.+++.|+||.|+.+++.++.++
T Consensus 8 ~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~-~n~lv~g~-y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~ 82 (210)
T KOG1691|consen 8 LLLLIFLLLLPLVHALRFDVPSKTTKCISEEIH-ENVLVVGD-YEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTK 82 (210)
T ss_pred HHHHHHHHHhhhhheEEEEecCCCCEeehhhhc-cCeEEEEE-EEEecCCCC---ccceEEEEEEcCCCceeehhhcccc
Confidence 444556677899999999996 6899999999 48899999 999886521 1157999999999999999999999
Q ss_pred CEEEEEcCCceeeEEEEEc--CCCC---CeEEEEEEEEccc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 88 DKFVFKAPRSGMYQFCFHN--PTST---PEEVSFYIHIGHI-PNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKA 161 (212)
Q Consensus 88 g~~~f~~~~~G~y~~Cf~n--~~~~---~~~V~f~i~~g~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 161 (212)
|+|+|++.++|.|..||.+ +... ...|.|++..|.+ +||+++||+++++|+|.++++|.+.++.|.++..|++.
T Consensus 83 gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~ 162 (210)
T KOG1691|consen 83 GQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLRE 162 (210)
T ss_pred ceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 4333 3689999999987 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178 162 LESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA 208 (212)
Q Consensus 162 re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~ 208 (212)
||+++|+++++||+||.|+|++-++++++++.||++|||+||++||.
T Consensus 163 REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKL 209 (210)
T KOG1691|consen 163 REEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKL 209 (210)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999985
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-40 Score=250.08 Aligned_cols=190 Identities=28% Similarity=0.463 Sum_probs=167.1
Q ss_pred HHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEE
Q 028178 13 GFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKF 90 (212)
Q Consensus 13 ~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~ 90 (212)
++++++++.+..++|+++ ..+|||+++++.++.++.. |+|+.|| +.+||+.|++|+|++|++..++..+.|
T Consensus 12 ~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~-fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~ 84 (209)
T KOG1693|consen 12 LLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFE-FQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSF 84 (209)
T ss_pred HHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEE-EEEEeCC------ceeeEEEEECCCCCEEeeccccccccE
Confidence 334445555889999996 5899999999744459999 9999986 568999999999999999999999999
Q ss_pred EEEcCCceeeEEEEEcCCCC--CeEEEEEEEEcccCCCCcc--cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 91 VFKAPRSGMYQFCFHNPTST--PEEVSFYIHIGHIPNEHDL--AKDEHLDPIYVRIAELREALETVSAEQRYLKALESRH 166 (212)
Q Consensus 91 ~f~~~~~G~y~~Cf~n~~~~--~~~V~f~i~~g~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~ 166 (212)
.|++...|+|++||+|..++ .|.|++++++|.+.+.... +.+..++.++..+..+.+.|+.|.+.|.|.|.||.+.
T Consensus 85 ~f~ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn 164 (209)
T KOG1693|consen 85 LFKAEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARN 164 (209)
T ss_pred EEEEecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999985 7999999999976432211 2234567899999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 028178 167 RSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAY 209 (212)
Q Consensus 167 ~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~ 209 (212)
+.++++++.||+|||++++++++++++.||+.||.||+.|+.-
T Consensus 165 ~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~ 207 (209)
T KOG1693|consen 165 RSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRKR 207 (209)
T ss_pred ccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC
Confidence 9999999999999999999999999999999999999988754
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=221.93 Aligned_cols=179 Identities=27% Similarity=0.405 Sum_probs=155.6
Q ss_pred EEEEEe--CCcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeE
Q 028178 24 TLSITV--TDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQ 101 (212)
Q Consensus 24 al~f~i--~~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~ 101 (212)
.+++.+ |+++|||+.++. +-++.+. |+|++|. ++.+|++.+.+|.|.++...+.+..|.+++.+.++|.|+
T Consensus 35 dftv~ipAGk~eCf~Q~v~~-~~tle~e-yQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~ 107 (236)
T KOG3287|consen 35 DFTVMIPAGKTECFYQPVPQ-GATLEVE-YQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ 107 (236)
T ss_pred ceEEEecCCCceeeeeeccC-CeEEEEE-EEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence 455666 479999999995 8899999 9999983 468899999999999999999999999999999999999
Q ss_pred EEEEcCCCC--CeEEEEEEEEccc---C----CCCcccc-----cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 102 FCFHNPTST--PEEVSFYIHIGHI---P----NEHDLAK-----DEHLDPIYVRIAELREALETVSAEQRYLKALESRHR 167 (212)
Q Consensus 102 ~Cf~n~~~~--~~~V~f~i~~g~~---~----~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~ 167 (212)
+||+|++|+ .|.|.|++-+... . .|.+.++ ..+++++++.+.++..+++.+...|..+|.||.|+|
T Consensus 108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999996 7999999955322 1 1111111 245788999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 028178 168 STNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAY 209 (212)
Q Consensus 168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~ 209 (212)
...+++..||.|||.+|+++||+++..|||+|||+|..|+..
T Consensus 188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 999999999999999999999999999999999999988654
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=1e-37 Score=241.93 Aligned_cols=174 Identities=35% Similarity=0.656 Sum_probs=5.5
Q ss_pred EEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEE--cCCCceeeeeeccc-CCEEEEEcCCce
Q 028178 24 TLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVT--CPDGSIVRALKGTS-GDKFVFKAPRSG 98 (212)
Q Consensus 24 al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~--~p~g~~v~~~~~~~-~g~~~f~~~~~G 98 (212)
|++|+++ +++||++++++ ++.+.++ |.+.+++ ++.++++.|+ +|+|+.++.+.+.. +|.|+|+++++|
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~-~~~i~~~-y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G 73 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPK-GTTIRGS-YRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESG 73 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCC-CcEEEEE-EEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCC
Confidence 5778884 78999999995 9999999 9999874 2568999999 56669999886654 479999999999
Q ss_pred eeEEEEEcCCCC--C-eEEEEEEEEccc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028178 99 MYQFCFHNPTST--P-EEVSFYIHIGHI-PNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTR 174 (212)
Q Consensus 99 ~y~~Cf~n~~~~--~-~~V~f~i~~g~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 174 (212)
+|++||+|+.+. + +.|+|++++|.+ .++.+.++++++++++..|++|.+.++.|.++|+|++.|+.+|++.+++++
T Consensus 74 ~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~ 153 (183)
T PF01105_consen 74 EYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTN 153 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999986 4 899999999865 356778889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028178 175 KRVVFYTVSEYLLLAGAGALQVMYIRRLFG 204 (212)
Q Consensus 175 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~ 204 (212)
.|++||+++++++++++++||+++||+||+
T Consensus 154 ~~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 154 SRIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ------------------------HHHHHH
T ss_pred heEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999996
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.86 E-value=0.79 Score=31.40 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCEEEEeEEEEEeCcc-ccCCCCCceeEEEEcCCCceeeeeec---ccCCEEE--EEcCC---ceeeEEEEEcCCCC
Q 028178 42 KEDTITGNVFVTTDHEL-FWNSDHPGIDFTVTCPDGSIVRALKG---TSGDKFV--FKAPR---SGMYQFCFHNPTST 110 (212)
Q Consensus 42 ~~~~i~~~~y~v~~~~~-~~~~~~~~i~~~v~~p~g~~v~~~~~---~~~g~~~--f~~~~---~G~y~~Cf~n~~~~ 110 (212)
+|+.|.+. --+.+.+. .....+..+.+.|.||+|+.+..... ...|.++ |..+. .|.|++=+......
T Consensus 13 PGetV~~~-~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~~ 89 (99)
T PF01835_consen 13 PGETVHFR-AIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDDG 89 (99)
T ss_dssp TTSEEEEE-EEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTTT
T ss_pred CCCEEEEE-EEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccCC
Confidence 57888877 33333321 11123567999999999999988765 3456444 44332 59999988875443
No 8
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=92.53 E-value=1.3 Score=30.10 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178 64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT 108 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|+.+.-+ .+...|. .+|++...|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4679999999999655543 3334464 5688999999999888654
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=91.23 E-value=1.9 Score=27.56 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=41.5
Q ss_pred ceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeeccc--C---CEEEEEcCCceeeEEEE
Q 028178 33 ECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTS--G---DKFVFKAPRSGMYQFCF 104 (212)
Q Consensus 33 ~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~--~---g~~~f~~~~~G~y~~Cf 104 (212)
..|..++++ +..+.+. +... ..+.++.+.+++|..+....... . ....|+++.+|+|-+=+
T Consensus 3 D~y~f~v~a-g~~l~i~---l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPA-GGTLTID---LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEEST-TEEEEEE---ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcC-CCEEEEE---EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 467788995 7776655 4332 23688999999987766632222 2 35778899999998744
No 10
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=90.07 E-value=0.55 Score=34.37 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=23.3
Q ss_pred EEEcCCceeeEEEEEcCCCC--CeEEEEEE
Q 028178 91 VFKAPRSGMYQFCFHNPTST--PEEVSFYI 118 (212)
Q Consensus 91 ~f~~~~~G~y~~Cf~n~~~~--~~~V~f~i 118 (212)
+++++.+|.|-++|+|+.+- .|++.+.+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence 46778999999999999984 78887765
No 11
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=87.86 E-value=5.2 Score=27.14 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.1
Q ss_pred CCceeEEEEcCCCc----eee-eeecccCCE--EEEEcCCceeeEEEEEcC
Q 028178 64 HPGIDFTVTCPDGS----IVR-ALKGTSGDK--FVFKAPRSGMYQFCFHNP 107 (212)
Q Consensus 64 ~~~i~~~v~~p~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~ 107 (212)
...+.+.|.+|++. .+. +-.....|. .+|++...|.|++++.-.
T Consensus 41 ~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 41 GDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred CceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 34688999999986 332 223445664 568899999999988753
No 12
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.03 E-value=8.2 Score=29.92 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=21.0
Q ss_pred CCCEEEEeEEEEEeCccccCCCCCceeEEEEc
Q 028178 42 KEDTITGNVFVTTDHELFWNSDHPGIDFTVTC 73 (212)
Q Consensus 42 ~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~ 73 (212)
+|+.+.+. |.+...| +....++.+.|
T Consensus 36 ~g~~v~V~-~~iyN~G-----~~~A~dV~l~D 61 (181)
T PF05753_consen 36 EGEDVTVT-YTIYNVG-----SSAAYDVKLTD 61 (181)
T ss_pred CCcEEEEE-EEEEECC-----CCeEEEEEEEC
Confidence 58889999 9998765 34668899998
No 13
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=84.16 E-value=3 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=35.8
Q ss_pred ceeEEEEcCCCceeee--eecccCCEEEEEcCCceeeEEEEEcCCC
Q 028178 66 GIDFTVTCPDGSIVRA--LKGTSGDKFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
++.|.|++.++..+.. ..-...|.+.|.--.+|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5788999998888775 5556778999998899999998887444
No 14
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=84.00 E-value=6.1 Score=27.59 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCceeEEEEcCCCceeeeeeccc--CCEEEEE--cCCceeeEEEEEcCCCC
Q 028178 64 HPGIDFTVTCPDGSIVRALKGTS--GDKFVFK--APRSGMYQFCFHNPTST 110 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~~~~~~--~g~~~f~--~~~~G~y~~Cf~n~~~~ 110 (212)
..++.+.|+|.+|+++|++.... .+...+. ....|.|.+=+.+....
T Consensus 47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~ 97 (106)
T PF11589_consen 47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGT 97 (106)
T ss_dssp -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-
T ss_pred CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCC
Confidence 35699999999999999874333 3345555 45689999999988763
No 15
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=83.11 E-value=7.8 Score=25.08 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=32.1
Q ss_pred CceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCCC
Q 028178 65 PGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTST 110 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 110 (212)
++..+.+.++++.......-..+|.|.|..-.+|.|.+=+.-....
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc
Confidence 5688899988887777777778899999955669999998766543
No 16
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=76.57 E-value=15 Score=24.19 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=26.1
Q ss_pred CEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee--cccCCEEEEE
Q 028178 44 DTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK--GTSGDKFVFK 93 (212)
Q Consensus 44 ~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~g~~~f~ 93 (212)
....+. |.+... ...+.+.|+|.+|++|.... ..+.|.+.|.
T Consensus 12 ~~~~~~-~~l~~~-------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~ 55 (81)
T PF13860_consen 12 TKGSIE-YTLPED-------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFT 55 (81)
T ss_dssp CEEEEE-EEECSS-------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEE
T ss_pred EEEEEE-EeCCCc-------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEE
Confidence 356666 666443 24589999999999998643 2233444444
No 17
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=75.95 E-value=34 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=35.5
Q ss_pred ceeEEEEcCCCceeee-eecccCCEEEEE---cCCceeeEEEEEcCCCCCeEEEEEEE
Q 028178 66 GIDFTVTCPDGSIVRA-LKGTSGDKFVFK---APRSGMYQFCFHNPTSTPEEVSFYIH 119 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~-~~~~~~g~~~f~---~~~~G~y~~Cf~n~~~~~~~V~f~i~ 119 (212)
...+.+++|+|+.+.. ..+.......+. ..+.|.+++.+.|..+.+..+.+.+.
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtVt 99 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTVT 99 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEEE
Confidence 4678899999998876 233333334444 35689999999887765444444443
No 18
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=75.87 E-value=16 Score=22.56 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=27.0
Q ss_pred CceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCC
Q 028178 65 PGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
......+.+.+++-+....... .+.|+.-.+|.|.|-+.....
T Consensus 8 ~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 8 IRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp EEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEET
T ss_pred eEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECC
Confidence 3455666666665554332222 899999999999998886553
No 19
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=74.45 E-value=12 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=12.2
Q ss_pred CCceeEEEEcCCCceeee
Q 028178 64 HPGIDFTVTCPDGSIVRA 81 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~ 81 (212)
...+.|.|+|..+.+-..
T Consensus 71 ~~~v~F~vtD~~~~v~V~ 88 (155)
T PRK13159 71 SLKVSFTVIDKNAATQVE 88 (155)
T ss_pred CcEEEEEEEcCCcEEEEE
Confidence 346899999876655433
No 20
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=73.87 E-value=14 Score=29.71 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.7
Q ss_pred EEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee--cccCCEEEEEc---------CCceeeEEEEEcC
Q 028178 45 TITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK--GTSGDKFVFKA---------PRSGMYQFCFHNP 107 (212)
Q Consensus 45 ~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~g~~~f~~---------~~~G~y~~Cf~n~ 107 (212)
.+.+. |...+. ...+.+.|+|.+|++|+.-. ....|.+.|.. -.+|.|.+=+...
T Consensus 114 ~~~~~-~~l~~~-------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 114 TTPFG-VELPSA-------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred ceEEE-EEcCCC-------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 45666 655332 34699999999999998543 24567777743 3478998888644
No 21
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=71.58 E-value=17 Score=29.16 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEEEEEc---------CCceeeEEEEEcCC
Q 028178 43 EDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKA---------PRSGMYQFCFHNPT 108 (212)
Q Consensus 43 ~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~---------~~~G~y~~Cf~n~~ 108 (212)
+..+.+. |...+. ...+.+.|+|.+|++|+.... ..|.+.|.. -.+|.|.|=+.-..
T Consensus 110 g~~~~~~-~~l~~~-------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 110 GTPVTIS-PNPAAD-------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS 175 (223)
T ss_pred CceeEEE-EeccCC-------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence 3456677 766443 356999999999999987543 455555543 23689999887553
No 22
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=71.34 E-value=20 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCceeEEEEcCCCceeeeee
Q 028178 64 HPGIDFTVTCPDGSIVRALK 83 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~~~ 83 (212)
...+.|.|+|..+.+-....
T Consensus 77 ~~~v~F~vtD~~~~v~V~Y~ 96 (159)
T PRK13150 77 SLKVNFSLYDAEGSVTVSYE 96 (159)
T ss_pred CcEEEEEEEcCCcEEEEEEe
Confidence 34689999998776544433
No 23
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.99 E-value=44 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=38.4
Q ss_pred EEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee--cccCCEEEEEcCC---------ceeeEEEEEcC
Q 028178 45 TITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK--GTSGDKFVFKAPR---------SGMYQFCFHNP 107 (212)
Q Consensus 45 ~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~ 107 (212)
.+.+. |.+... ...+.+.|+|.+|++|+... ....|.+.|.... +|.|.|=+...
T Consensus 129 ~~~~~-~~l~~~-------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 129 LIALK-LYFPED-------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN 194 (259)
T ss_pred eeEEE-EecCCc-------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 45666 665332 34699999999999998653 3445777776533 69999999743
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.22 E-value=27 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=9.0
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 028178 135 LDPIYVRIAELREALETVSA 154 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~ 154 (212)
++.++..++++.+.+..+..
T Consensus 8 l~~ie~~l~~~~~~i~~lE~ 27 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 25
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=66.27 E-value=89 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=24.7
Q ss_pred ceeEEEEcCCCceeeeeecccCCEEEEE---cCCceeeEEEEE
Q 028178 66 GIDFTVTCPDGSIVRALKGTSGDKFVFK---APRSGMYQFCFH 105 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~~~~~~~g~~~f~---~~~~G~y~~Cf~ 105 (212)
.+++.+++|+|..........++...+. ..+.|.|++-..
T Consensus 243 ~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~ 285 (374)
T TIGR03503 243 VIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGT 285 (374)
T ss_pred EEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEE
Confidence 4777888999984444444444444433 346788877654
No 26
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=66.12 E-value=37 Score=27.17 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCceeEEEEcCCCceeeeee--cccCCEEEEEcCC---------ceeeEEEEEc
Q 028178 64 HPGIDFTVTCPDGSIVRALK--GTSGDKFVFKAPR---------SGMYQFCFHN 106 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n 106 (212)
...+.+.|+|.+|++|+... ..+.|.+.|.... +|.|.|-+.-
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 35689999999999998753 3456777776532 5999999964
No 27
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=64.39 E-value=31 Score=28.91 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=38.5
Q ss_pred EEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecc----cCCEEEEEc---------CCceeeEEEEEcC
Q 028178 45 TITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGT----SGDKFVFKA---------PRSGMYQFCFHNP 107 (212)
Q Consensus 45 ~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~----~~g~~~f~~---------~~~G~y~~Cf~n~ 107 (212)
.+.+. |....... .....+.+.|+|.+|++|+.-... ..|.+.|.. -.+|.|.|=+...
T Consensus 150 ~~~~~-~~l~~~~~---~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 150 KLSFS-LFFDEKID---ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred ceEEE-Eecccccc---ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 55666 65533110 123469999999999999875332 347777774 3369999988644
No 28
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.90 E-value=32 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 134 HLDPIYVRIAELREALETVSAEQRYLKA 161 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 161 (212)
+++.|...++.|...+..+..+..-++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777666553
No 29
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=63.28 E-value=27 Score=25.44 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=17.9
Q ss_pred CCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCc
Q 028178 43 EDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS 77 (212)
Q Consensus 43 ~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~ 77 (212)
+..+.+. =.|..+..-+.++...+.|.|+|..+.
T Consensus 50 ~~~vrv~-G~V~~gSv~~~~~~~~~~F~i~D~~~~ 83 (131)
T PF03100_consen 50 GRKVRVG-GLVVEGSVEYDPDGNTLTFTITDGGKE 83 (131)
T ss_dssp TSEEEEE-EEEECTTEEE-TTSSEEEEEEE-SS-E
T ss_pred CceEEEe-eEEccCCEEEcCCCCEEEEEEEECCcE
Confidence 4555555 445544322222456789999987654
No 30
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=62.68 E-value=13 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028178 175 KRVVFYTVSEYLLLAGAGALQVMYIRRLFGKT 206 (212)
Q Consensus 175 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 206 (212)
.-++||+.+-+++.++.+.|- .||.||++|
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 346788888888888888875 578999876
No 31
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=61.88 E-value=71 Score=25.73 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCceeEEEEcCCCceeeeee--cccCCEEEEEc---------CCceeeEEEEEcC
Q 028178 64 HPGIDFTVTCPDGSIVRALK--GTSGDKFVFKA---------PRSGMYQFCFHNP 107 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~v~~~~--~~~~g~~~f~~---------~~~G~y~~Cf~n~ 107 (212)
...+.+.|+|.+|++|+... ....|.+.|.. -.+|.|+|=+.-.
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSAS 182 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 34699999999999998643 34567777764 2368999999753
No 32
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=61.47 E-value=42 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=11.6
Q ss_pred CceeEEEEcCCCceeee
Q 028178 65 PGIDFTVTCPDGSIVRA 81 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~ 81 (212)
..+.|.|+|....+-..
T Consensus 78 l~v~F~vtD~~~~v~V~ 94 (160)
T PRK13165 78 LKVSFTLYDAGGSVTVT 94 (160)
T ss_pred eEEEEEEEcCCeEEEEE
Confidence 35899999876654443
No 33
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=58.72 E-value=82 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.9
Q ss_pred ceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCC--CC-----CeEEEEEE
Q 028178 66 GIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPT--ST-----PEEVSFYI 118 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~--~~-----~~~V~f~i 118 (212)
.+.+.|+. +|..+....-.....+.|++..+|.|++=++... +. .+.|++.+
T Consensus 417 lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V 475 (667)
T PRK14081 417 RYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKV 475 (667)
T ss_pred EEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEE
Confidence 35555555 6666666655666789999999999977666544 42 35566555
No 34
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=58.24 E-value=47 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=10.7
Q ss_pred CCceeEEEEcCCCce
Q 028178 64 HPGIDFTVTCPDGSI 78 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~ 78 (212)
...+.|.|+|....+
T Consensus 70 ~~~~~F~ltD~~~~i 84 (148)
T PRK13254 70 GLTVRFVVTDGNATV 84 (148)
T ss_pred CCEEEEEEEeCCeEE
Confidence 456899999975443
No 35
>PRK15396 murein lipoprotein; Provisional
Probab=57.80 E-value=53 Score=21.75 Aligned_cols=45 Identities=9% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028178 133 EHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177 (212)
Q Consensus 133 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 177 (212)
.+++.|...++.|...++.+..+..-.+.--..-.+-.+..|.|+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888887777666543333334444445554
No 36
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=57.24 E-value=43 Score=26.74 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred CEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee-cccCCEEEEEc------CCceeeEEEEEcCC
Q 028178 44 DTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK-GTSGDKFVFKA------PRSGMYQFCFHNPT 108 (212)
Q Consensus 44 ~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~-~~~~g~~~f~~------~~~G~y~~Cf~n~~ 108 (212)
....+. |.+.+. ...+.+.|+|.+|++..... ....|.+.|.. -.+|.|++=+....
T Consensus 110 ~~~~~~-~~L~~~-------a~~v~v~I~D~~G~v~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGR-LTLKHP-------APTLTLHITDILGQEKKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEE-EecCCc-------CcEEEEEEEeCCCCEEEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 345666 665332 34699999999999732222 23557777775 34799999997554
No 37
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=56.05 E-value=35 Score=33.45 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178 63 DHPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 63 ~~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+..++.+.+.||.|...-.. ....+| +..|++.+.|.|.+|+.+..-
T Consensus 881 ~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~ 930 (1113)
T KOG0518|consen 881 SSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQ 930 (1113)
T ss_pred CccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCc
Confidence 45678899999998765433 223444 457899999999999999874
No 38
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=55.51 E-value=34 Score=19.93 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=18.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 028178 166 HRSTNESTRKRVVFYTVSEYLLLAGAGAL 194 (212)
Q Consensus 166 ~~~~~es~~~rv~~~si~~i~vli~~~~~ 194 (212)
|.++-+.--+-..|.+++-++++++++++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai~ 42 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAIF 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554555667777777777777653
No 39
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=52.76 E-value=69 Score=21.58 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028178 133 EHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVF 179 (212)
Q Consensus 133 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 179 (212)
.+++.+...++.|+.....+..+..-.+.--..-.+-.+..|.|+--
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788888888888888888877766665554455556666666543
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=52.24 E-value=1.3e+02 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028178 179 FYTVSEYLLLAGAGALQVMYIRRLF 203 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lk~fF 203 (212)
||..+-+++ +++.++-++.+-|+|
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHHheeC
Confidence 666654444 444455555544443
No 41
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=52.15 E-value=52 Score=22.18 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=26.0
Q ss_pred cCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeee
Q 028178 39 VIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRAL 82 (212)
Q Consensus 39 v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~ 82 (212)
-|.+++.|... +.|...... -+..+.+.|.|.+|+++.+.
T Consensus 7 ~P~pg~~V~sp-~~V~G~A~~---FEgtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 7 APAPGDTVSSP-VKVSGKARV---FEGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred CCCCcCCcCCC-EEEEEEEEE---eeeEEEEEEEcCCCcEEEEe
Confidence 34455666666 666553311 14469999999999998654
No 42
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=52.11 E-value=84 Score=22.36 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=45.0
Q ss_pred cceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCC-Cceeeeee--c-ccCCEEEEE---cCCceeeEEEE
Q 028178 32 TECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPD-GSIVRALK--G-TSGDKFVFK---APRSGMYQFCF 104 (212)
Q Consensus 32 ~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~-g~~v~~~~--~-~~~g~~~f~---~~~~G~y~~Cf 104 (212)
-.|..+++..-+ -.++ |+. +|+ ..-+.|+|.+ .+++|+.. + ...+.|+.. .+..-+|-+||
T Consensus 39 LFcVs~Die~L~--aEv~-f~m-DGe--------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~f 106 (132)
T PF15417_consen 39 LFCVSEDIEALD--AEVY-FQM-DGE--------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCF 106 (132)
T ss_pred EEEEecchheee--eEEE-EEE-cCc--------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEE
Confidence 369998887533 2333 444 443 3557888865 56666532 1 223355554 35567999999
Q ss_pred EcCCCCCeEEEEEEE
Q 028178 105 HNPTSTPEEVSFYIH 119 (212)
Q Consensus 105 ~n~~~~~~~V~f~i~ 119 (212)
....-....|.+.++
T Consensus 107 tGtkInhAvv~vtFe 121 (132)
T PF15417_consen 107 TGTKINHAVVKVTFE 121 (132)
T ss_pred eccEeeeEEEEEEec
Confidence 987654445555554
No 43
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=50.46 E-value=64 Score=22.79 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=22.8
Q ss_pred ceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceee
Q 028178 33 ECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVR 80 (212)
Q Consensus 33 ~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~ 80 (212)
+=...++.. ++.+.+. |+|....+ ...-..+...|.++..+=
T Consensus 37 ~~~gf~vv~-d~~v~v~-f~Vtr~~~----~~a~C~VrA~~~d~aeVG 78 (112)
T PF14155_consen 37 EVIGFEVVD-DSTVEVT-FDVTRDPG----RPAVCIVRALDYDGAEVG 78 (112)
T ss_pred EEEEEEECC-CCEEEEE-EEEEECCC----CCEEEEEEEEeCCCCEEE
Confidence 344444552 6778888 88876421 122244555566665553
No 44
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.24 E-value=61 Score=19.93 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=22.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 135 LDPIYVRIAELREALETVSAEQRYLKALESR 165 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~ 165 (212)
++.++..+.++...+..++.+..-++..-+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777666544443
No 45
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=48.09 E-value=74 Score=20.54 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCceeeEEEEEcCCCC--CeEEEEEEEEcc
Q 028178 95 PRSGMYQFCFHNPTST--PEEVSFYIHIGH 122 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~~--~~~V~f~i~~g~ 122 (212)
...+..+|.|.|-... .+.++|.+.++.
T Consensus 4 ~~~d~lkf~F~~id~~d~~re~s~~l~i~~ 33 (74)
T PF08234_consen 4 IGGDQLKFVFTNIDPNDPDREFSFTLDISS 33 (74)
T ss_dssp -STT-EEEEE-S-BTTBSSS-EEEEEE-SS
T ss_pred cCCceEEEEEeEcCCCCCCceEEEEEEECC
Confidence 3455678889887764 577888888776
No 46
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=46.80 E-value=84 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=13.5
Q ss_pred CCCceeEEEEcCCCceeeeee
Q 028178 63 DHPGIDFTVTCPDGSIVRALK 83 (212)
Q Consensus 63 ~~~~i~~~v~~p~g~~v~~~~ 83 (212)
+....++.|+|++|+.++..+
T Consensus 22 sgq~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 22 SGQRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp SS--EEEEEE-TT--EEEETT
T ss_pred CCCEEEEEEECCCCCEEEEec
Confidence 356799999999999999764
No 47
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.36 E-value=59 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 138 IYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMY 198 (212)
Q Consensus 138 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 198 (212)
+..+++-|+++++.+.+..+.+++ .++++...++-||-|+-|++-++..++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 344556677788877777766653 3567777889999999999999999998764
No 48
>PHA02650 hypothetical protein; Provisional
Probab=46.24 E-value=36 Score=22.53 Aligned_cols=32 Identities=6% Similarity=-0.152 Sum_probs=22.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 171 ESTRKRVVFYTVSEYLLLAGAGALQVMYIRRL 202 (212)
Q Consensus 171 es~~~rv~~~si~~i~vli~~~~~Qv~~lk~f 202 (212)
.+....-++|-++-+++++++.++-..|||-.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666677888888888888888854
No 49
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=46.23 E-value=1.1e+02 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=15.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 133 EHLDPIYVRIAELREALETVSAEQRYLKAL 162 (212)
Q Consensus 133 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 162 (212)
++++.++.++.+++-.+..++...+-.+.|
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555555444433333
No 50
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=45.94 E-value=37 Score=28.70 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 138 IYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMY 198 (212)
Q Consensus 138 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 198 (212)
++.+++-|+.+++-|.+..+.+. .+++.+...++-||-|+-|++-+++++++++.
T Consensus 271 I~~RvnvLN~Rl~vi~d~l~il~------e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 271 INPRVNVLNRRLEVISDLLDILN------EQLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 45566667777777766655443 24667778899999999999999999977753
No 51
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=44.94 E-value=1.2e+02 Score=23.82 Aligned_cols=58 Identities=7% Similarity=0.001 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHH
Q 028178 137 PIYVRIAELREALETVSAEQRYLKALESRHRSTNES------TRKRVVFYTVSEYLLLAGAGAL 194 (212)
Q Consensus 137 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es------~~~rv~~~si~~i~vli~~~~~ 194 (212)
.-+.+++...+.+..+..+-.-.+++........++ -.....|+..+.++++|++++.
T Consensus 105 ~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433333333333333333 3344445566666666665554
No 52
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=44.83 E-value=72 Score=21.78 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=9.6
Q ss_pred EEEEEcCCceeeEE
Q 028178 89 KFVFKAPRSGMYQF 102 (212)
Q Consensus 89 ~~~f~~~~~G~y~~ 102 (212)
.+.|++.++|+|.+
T Consensus 77 ~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 77 TVTFTPLKPGEYEF 90 (104)
T ss_dssp EEEEEE-S-EEEEE
T ss_pred EEEEcCCCCEEEEE
Confidence 57778899999976
No 53
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=43.87 E-value=67 Score=27.96 Aligned_cols=68 Identities=18% Similarity=0.379 Sum_probs=35.7
Q ss_pred eEEEEEeCCcceEEE--ecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCC---EEEEEcCCc
Q 028178 23 STLSITVTDTECVYE--HVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGD---KFVFKAPRS 97 (212)
Q Consensus 23 ~al~f~i~~~~Cf~e--~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g---~~~f~~~~~ 97 (212)
..+.+.+....|--. .++. |. .. |.|...+ .....|.+.++. .++-+.++..-| .+.++. .+
T Consensus 30 ~~v~Vti~d~~c~p~~~tVpA-G~---~~-f~V~N~~------~~~~Efe~~~~~-~vv~e~EnIaPG~s~~l~~~L-~p 96 (375)
T PRK10378 30 PQVKVTVNDKQCEPMTLTVNA-GK---TQ-FIIQNHS------QKALEWEILKGV-MVVEERENIAPGFSQKMTANL-QP 96 (375)
T ss_pred CceEEEEECCccccCceeeCC-CC---EE-EEEEeCC------CCcceEEeeccc-cccccccccCCCCceEEEEec-CC
Confidence 346666666677654 5553 53 33 5565543 233666666422 233333333333 444333 69
Q ss_pred eeeEE-E
Q 028178 98 GMYQF-C 103 (212)
Q Consensus 98 G~y~~-C 103 (212)
|+|.+ |
T Consensus 97 GtY~~~C 103 (375)
T PRK10378 97 GEYDMTC 103 (375)
T ss_pred ceEEeec
Confidence 99988 8
No 54
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=43.56 E-value=92 Score=20.88 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=10.9
Q ss_pred ceeEEEEcCCCceee
Q 028178 66 GIDFTVTCPDGSIVR 80 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~ 80 (212)
+.++-|+|.+|..--
T Consensus 68 dYDVLItd~dG~~hq 82 (100)
T PF05984_consen 68 DYDVLITDGDGSEHQ 82 (100)
T ss_pred cccEEEecCCCCcCC
Confidence 688888888775443
No 55
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=43.17 E-value=1.3e+02 Score=21.94 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=31.8
Q ss_pred CceeEEEEcCCCceeeeeeccc-CCE---EEEEc---CCceeeEEEEEcCCC--C--CeEEEEEE
Q 028178 65 PGIDFTVTCPDGSIVRALKGTS-GDK---FVFKA---PRSGMYQFCFHNPTS--T--PEEVSFYI 118 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~-~g~---~~f~~---~~~G~y~~Cf~n~~~--~--~~~V~f~i 118 (212)
+.-.+.+++|+|..+....... ++. ..... -..|.|.+=+.--.+ + .-.+.|++
T Consensus 60 ~fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV 124 (127)
T COG2372 60 GFSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFSV 124 (127)
T ss_pred CcceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEEe
Confidence 3467899999998877543222 121 33332 346999888775554 2 23555554
No 56
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=43.10 E-value=76 Score=19.29 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028178 133 EHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKR 176 (212)
Q Consensus 133 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 176 (212)
+.++.|+..+..|.....+|..+..-+-.--.+....++.+..+
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 34677788888887777777766555444334444444444433
No 57
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=42.95 E-value=40 Score=25.95 Aligned_cols=34 Identities=15% Similarity=-0.038 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028178 172 STRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGK 205 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~ 205 (212)
=.+-|..+++.+-++++++++++|++.+-+--.+
T Consensus 26 YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 26 YIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567889999999999999999999987665554
No 58
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=42.03 E-value=1.5e+02 Score=22.40 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=36.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028178 132 DEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTV 182 (212)
Q Consensus 132 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 182 (212)
+...+.+..+.++|.+....+++-.......-++.+.+..=..-+..+..+
T Consensus 51 ~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~ 101 (156)
T PF08372_consen 51 SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFV 101 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHH
Confidence 344567888888888888888888888877777777777655555544433
No 59
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=41.98 E-value=79 Score=20.37 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=29.7
Q ss_pred ceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCC
Q 028178 66 GIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+.=+.|+|.+|+.+++....+...+++ +....+++=+-|...
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~~ 49 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAGA 49 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCCc
Confidence 466788999999999877666667777 444566666666554
No 60
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=41.89 E-value=1.8e+02 Score=23.37 Aligned_cols=32 Identities=9% Similarity=0.286 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028178 175 KRVVFYTVSEYLLLAGAGALQVMYIRRLFGKT 206 (212)
Q Consensus 175 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 206 (212)
+...+|--+-++++++++++-++.+-++|++-
T Consensus 212 sk~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 212 SKLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34467777788888899999999999999763
No 61
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=40.88 E-value=1.1e+02 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred eeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCC
Q 028178 67 IDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPT 108 (212)
Q Consensus 67 i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
..|.+.+++|.....+.-.....|++++..+|.|++=....+
T Consensus 225 YKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD 266 (667)
T PRK14081 225 YKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKD 266 (667)
T ss_pred EEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEec
Confidence 556677888887777777778899999999999988665544
No 62
>PF12669 P12: Virus attachment protein p12 family
Probab=40.65 E-value=30 Score=21.42 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=6.4
Q ss_pred HHHHhcccc
Q 028178 199 IRRLFGKTA 207 (212)
Q Consensus 199 lk~fF~~kk 207 (212)
++++|+++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887654
No 63
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=40.46 E-value=91 Score=19.41 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=28.6
Q ss_pred CceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCCCCeEEEEEEE
Q 028178 65 PGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIH 119 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~V~f~i~ 119 (212)
.+..+...+.+|..+-.....-+| .+....+|.|.+=+.-.. ...+|.+.
T Consensus 17 ~~~~v~at~~dG~~~~~~~~~vs~--~~d~~~~G~y~Vt~~y~~---~t~t~~Vt 66 (67)
T PF07523_consen 17 TGLFVTATYSDGTSLPLSDVTVSG--TVDTSKAGTYTVTYTYKG---VTATFTVT 66 (67)
T ss_dssp HCHEEEEEETTS-ES-GCCSEEES-----TTS-CCEEEEEEECT---EEEEEEEE
T ss_pred cCCEEEEEEcCCCEeceeeeEEEe--eeecCCCceEEEEEEECC---EEEEEEEE
Confidence 356788888888885443333334 677888999998887655 44444443
No 64
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=40.37 E-value=78 Score=22.37 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeee
Q 028178 43 EDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRAL 82 (212)
Q Consensus 43 ~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~ 82 (212)
++.+.+. +++...... .+..+.+.|++.+|..++..
T Consensus 34 ge~~~i~-i~~~~~~~i---~~~~~~~~i~~~~g~~v~~~ 69 (142)
T PF14524_consen 34 GEPIRIR-IDYEVNEDI---DDPVFGFAIRDSDGQRVFGT 69 (142)
T ss_dssp TSEEEEE-EEEEESS-E---EEEEEEEEEEETT--EEEEE
T ss_pred CCEEEEE-EEEEECCCC---CccEEEEEEEcCCCCEEEEE
Confidence 5555555 544432111 24568899999999888863
No 65
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=40.12 E-value=1.9e+02 Score=23.06 Aligned_cols=49 Identities=10% Similarity=0.242 Sum_probs=31.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028178 132 DEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLL 187 (212)
Q Consensus 132 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 187 (212)
++...+....|.+|+.++.+..-.. .+-+.+..+...|++.+|+.-.++
T Consensus 7 K~~~~~~~~~L~rle~qi~q~~~~~-------~~~qs~l~~~~~r~tv~slAl~~l 55 (251)
T COG5415 7 KDFVTKYTADLSRLESQIHQLDVAL-------KKSQSILSQWQSRLTVYSLALTVL 55 (251)
T ss_pred ccccccchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445677788888888776654332 344456666777777777655444
No 66
>PHA03054 IMV membrane protein; Provisional
Probab=39.36 E-value=53 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 173 TRKRVVFYTVSEYLLLAGAGALQVMYIR 200 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lk 200 (212)
....-++|-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556667777778888888887
No 67
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=39.22 E-value=40 Score=19.32 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccC
Q 028178 183 SEYLLLAGAGALQVMYIRRLFGKTAAYGR 211 (212)
Q Consensus 183 ~~i~vli~~~~~Qv~~lk~fF~~kk~~~~ 211 (212)
+.++-+++++++-.+..|++-.+|++..|
T Consensus 14 F~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677788888899999999887765
No 68
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=38.81 E-value=32 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHhhcceEEEEEeC
Q 028178 6 AQVCLVIGFILSFIRHVSTLSITVT 30 (212)
Q Consensus 6 ~~~~~~~~~l~~l~~~~~al~f~i~ 30 (212)
++++|+++++++++...+||+|...
T Consensus 26 ~~~~la~a~~vl~~g~~~gl~~~~~ 50 (298)
T TIGR02223 26 ATVLIAAILILLFIGGSSGLYLLTE 50 (298)
T ss_pred HHHHHHHHHHHHHhhccceeEEeec
Confidence 4555666667777777789998663
No 69
>PRK02710 plastocyanin; Provisional
Probab=38.69 E-value=1.4e+02 Score=21.08 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=11.8
Q ss_pred cCCEEEEEcCCceeeEE
Q 028178 86 SGDKFVFKAPRSGMYQF 102 (212)
Q Consensus 86 ~~g~~~f~~~~~G~y~~ 102 (212)
+...++++...+|.|.+
T Consensus 86 pg~t~~~tF~~~G~y~y 102 (119)
T PRK02710 86 PGESWEETFSEAGTYTY 102 (119)
T ss_pred CCCEEEEEecCCEEEEE
Confidence 44467777777999954
No 70
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=38.60 E-value=84 Score=22.24 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=23.0
Q ss_pred CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeee
Q 028178 31 DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRAL 82 (212)
Q Consensus 31 ~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~ 82 (212)
...++..++.+ |...-+. .-...++ ....+++.|++|+|..+...
T Consensus 58 ~~~~~tv~L~a-G~yyPiR-i~~~N~~-----g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 58 ASKSVTVYLTA-GTYYPIR-IVYANGG-----GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SEEEEEEEE-T-T-BEEEE-EEEEE-S-----S-EEEEEEEEETT-S--B--
T ss_pred CceEEEEEEEC-CcEEEEE-EEEEcCC-----CceEEEEEEECCCCcEEecC
Confidence 34677777774 7654444 2222322 24569999999999988764
No 71
>PHA02819 hypothetical protein; Provisional
Probab=37.73 E-value=65 Score=20.81 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 173 TRKRVVFYTVSEYLLLAGAGALQVMYIRR 201 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lk~ 201 (212)
....-+++-++-++.++++.++-..|||-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566677777778888888873
No 72
>PHA02975 hypothetical protein; Provisional
Probab=36.27 E-value=81 Score=20.27 Aligned_cols=28 Identities=4% Similarity=0.253 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 174 RKRVVFYTVSEYLLLAGAGALQVMYIRR 201 (212)
Q Consensus 174 ~~rv~~~si~~i~vli~~~~~Qv~~lk~ 201 (212)
....++|-++-++.++++.++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666688888888888888874
No 73
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.14 E-value=1.9e+02 Score=21.75 Aligned_cols=49 Identities=8% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028178 139 YVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLL 187 (212)
Q Consensus 139 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 187 (212)
...-..+.+....++..-+-+-..+.+.....++...++.+|.-++.+.
T Consensus 34 ~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 34 QEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 3333344444444455555566677788889999999999998777654
No 74
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=35.14 E-value=73 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 172 STRKRVVFYTVSEYLLLAGAGALQVMYI 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+-..+|.++..+++++..++=+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677999999999999988776664
No 75
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=34.95 E-value=1e+02 Score=22.69 Aligned_cols=78 Identities=10% Similarity=0.202 Sum_probs=44.2
Q ss_pred eEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeeccc---------CCEEEEEcCCceeeEEEE
Q 028178 34 CVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTS---------GDKFVFKAPRSGMYQFCF 104 (212)
Q Consensus 34 Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~---------~g~~~f~~~~~G~y~~Cf 104 (212)
+.....- .+..+.+++|.+...+.+ +..-+.+.+.|++|++++++.... ...|. ..-.+|.|.++.
T Consensus 20 eis~~~~-~~~~L~f~vyr~~G~D~Y---gsfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv-~~~~~g~~gl~v 94 (133)
T PF07680_consen 20 EISDALI-ENGTLSFHVYRVEGPDVY---GSFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYV-AKVKPGKHGLVV 94 (133)
T ss_pred EEeeeEE-eCCeEEEEEEEcCCCccC---CceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEE-ccccCCceeEEE
Confidence 4554444 355677665555443322 133488999999999999864321 12332 223478888887
Q ss_pred EcCCCCCeEEEEEE
Q 028178 105 HNPTSTPEEVSFYI 118 (212)
Q Consensus 105 ~n~~~~~~~V~f~i 118 (212)
--... -++.|.+
T Consensus 95 pLGak--A~i~L~~ 106 (133)
T PF07680_consen 95 PLGAK--ATITLPL 106 (133)
T ss_pred EcCCc--EEEEecC
Confidence 65443 3444443
No 76
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=34.92 E-value=63 Score=19.54 Aligned_cols=23 Identities=9% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 028178 183 SEYLLLAGAGALQVMYIRRLFGK 205 (212)
Q Consensus 183 ~~i~vli~~~~~Qv~~lk~fF~~ 205 (212)
.-+++.+..+++=+...|+|+.+
T Consensus 29 w~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 29 WPVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567778888889999998864
No 77
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=33.33 E-value=1.9e+02 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.9
Q ss_pred ccCCEEEEEcCCceeeEEEEEcCCC
Q 028178 85 TSGDKFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 85 ~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
..+|++.......|.|.+-|.|...
T Consensus 85 D~~Gki~Wk~~~kG~Y~v~l~n~e~ 109 (131)
T PF10794_consen 85 DEEGKIIWKNGRKGKYIVFLPNGET 109 (131)
T ss_pred CCCCcEEEecCCcceEEEEEcCCCc
Confidence 4567888888888999999888665
No 78
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=33.15 E-value=86 Score=22.52 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 028178 177 VVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212 (212)
Q Consensus 177 v~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~~~~ 212 (212)
+....++-.++=++.++||+.+..+.|+.=+--|||
T Consensus 5 LIi~~~~a~llQ~~lg~~Qik~Fn~~~~~L~~~G~V 40 (118)
T PRK10234 5 LITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRV 40 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 344555566667789999999999999753333443
No 79
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=32.83 E-value=78 Score=22.02 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=21.9
Q ss_pred EcCCceeeEEEEEcCCCCCeEEEEEEEEc
Q 028178 93 KAPRSGMYQFCFHNPTSTPEEVSFYIHIG 121 (212)
Q Consensus 93 ~~~~~G~y~~Cf~n~~~~~~~V~f~i~~g 121 (212)
+..+.|.|.+=..|.... ..+.|++.+.
T Consensus 73 k~~E~G~YTf~a~N~~~~-~s~tF~l~v~ 100 (101)
T cd05860 73 KGTEGGTYTFLVSNSDAS-ASVTFNVYVN 100 (101)
T ss_pred ChhhCcEEEEEEECCCCe-EEEEEEEEEe
Confidence 357889999999998764 7788887763
No 80
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.80 E-value=31 Score=23.74 Aligned_cols=7 Identities=29% Similarity=0.320 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 028178 15 ILSFIRH 21 (212)
Q Consensus 15 l~~l~~~ 21 (212)
.++|+++
T Consensus 15 ~lLlisS 21 (95)
T PF07172_consen 15 ALLLISS 21 (95)
T ss_pred HHHHHHh
Confidence 3344433
No 81
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=32.74 E-value=74 Score=18.89 Aligned_cols=18 Identities=11% Similarity=0.024 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028178 186 LLLAGAGALQVMYIRRLF 203 (212)
Q Consensus 186 ~vli~~~~~Qv~~lk~fF 203 (212)
++++++.+.-..++||+=
T Consensus 9 vli~lv~~gy~~hmkryc 26 (54)
T PF13260_consen 9 VLIVLVVVGYFCHMKRYC 26 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555667888874
No 82
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=32.70 E-value=32 Score=24.56 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.2
Q ss_pred ccCCEEEEEcCCceeeEEEEEcCCCC
Q 028178 85 TSGDKFVFKAPRSGMYQFCFHNPTST 110 (212)
Q Consensus 85 ~~~g~~~f~~~~~G~y~~Cf~n~~~~ 110 (212)
..+++|.|..-..|.+.=|=.|....
T Consensus 76 TGDDkF~fr~FHtG~W~SCEE~~~~~ 101 (118)
T PF07803_consen 76 TGDDKFIFRYFHTGIWLSCEENIEGP 101 (118)
T ss_pred cCCceeehhhhhcchhhhhhhhccCC
Confidence 55678998888888888888776654
No 83
>PHA02844 putative transmembrane protein; Provisional
Probab=31.90 E-value=86 Score=20.48 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 176 RVVFYTVSEYLLLAGAGALQVMYIRR 201 (212)
Q Consensus 176 rv~~~si~~i~vli~~~~~Qv~~lk~ 201 (212)
.-+++-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 33444445567777777777888773
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.12 E-value=4.3e+02 Score=24.39 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=11.4
Q ss_pred ceeeEEEEEcCCCC
Q 028178 97 SGMYQFCFHNPTST 110 (212)
Q Consensus 97 ~G~y~~Cf~n~~~~ 110 (212)
...|.||..+..+.
T Consensus 87 ~e~YqfcYv~~~g~ 100 (546)
T PF07888_consen 87 DEFYQFCYVDQKGE 100 (546)
T ss_pred CCeEEEEEECCCcc
Confidence 46799999988874
No 85
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=30.77 E-value=1.6e+02 Score=21.82 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 028178 179 FYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGR 211 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~~~ 211 (212)
..-.++++..+++.++.++.+--||++|+..-|
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~ 86 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPK 86 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 444577778888889999999999999886543
No 86
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=30.31 E-value=1.3e+02 Score=20.01 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028178 178 VFYTVSEYLLLAGAGALQVMYIRRLFGK 205 (212)
Q Consensus 178 ~~~si~~i~vli~~~~~Qv~~lk~fF~~ 205 (212)
.||-...++..++..+.=.+.+|.+|+.
T Consensus 44 lWF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 44 LWFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555566677777778888889999964
No 87
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=30.25 E-value=34 Score=30.17 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=16.4
Q ss_pred EEEcCCceeeEEEEEcCCC
Q 028178 91 VFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 91 ~f~~~~~G~y~~Cf~n~~~ 109 (212)
++.++++|.+++||.|...
T Consensus 427 s~~C~EpGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 427 SCHCHEPGWFRVCFANMSE 445 (471)
T ss_pred cceecCCCeEEEEeccCCH
Confidence 6778999999999999654
No 88
>PLN00115 pollen allergen group 3; Provisional
Probab=29.46 E-value=75 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=16.4
Q ss_pred CCccchhHHHHHHH-HHHHhhcceEEEEEeC
Q 028178 1 MRRRSAQVCLVIGF-ILSFIRHVSTLSITVT 30 (212)
Q Consensus 1 ~~~~~~~~~~~~~~-l~~l~~~~~al~f~i~ 30 (212)
|-.+|+++..++++ |+....-...++|+|+
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~ 31 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVG 31 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEEC
Confidence 44566664444333 3333333558899996
No 89
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=29.07 E-value=89 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=18.9
Q ss_pred CCceeeEEEEEcCCCC-CeEEEEEEE
Q 028178 95 PRSGMYQFCFHNPTST-PEEVSFYIH 119 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~~-~~~V~f~i~ 119 (212)
...|.|..+..|.... ....+|.+.
T Consensus 44 ~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 44 KDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred HHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4569999999999874 456666654
No 90
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=29.04 E-value=1.9e+02 Score=21.24 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=24.1
Q ss_pred CceeEEEEcCCC---ceeeeeecccCCEEEEE----cCCceeeEEEEEcCC
Q 028178 65 PGIDFTVTCPDG---SIVRALKGTSGDKFVFK----APRSGMYQFCFHNPT 108 (212)
Q Consensus 65 ~~i~~~v~~p~g---~~v~~~~~~~~g~~~f~----~~~~G~y~~Cf~n~~ 108 (212)
.+|.+.+...++ +.+.+..-...|++... ...+|.|++=|....
T Consensus 43 ~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 43 ADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred CCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 456666654332 23344444455665541 235789998887654
No 91
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=28.47 E-value=4.2e+02 Score=28.02 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=40.5
Q ss_pred CCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee--cccCC--EEEEEcCCc---eeeEEEEEcCC
Q 028178 42 KEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK--GTSGD--KFVFKAPRS---GMYQFCFHNPT 108 (212)
Q Consensus 42 ~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~g--~~~f~~~~~---G~y~~Cf~n~~ 108 (212)
+|+++++. --.-+.+......+..+.+.+.+|+|.++.... ...+| .+.|+.+++ |.|.+=++-..
T Consensus 407 pGE~v~~~-~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVN-ALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeee-eeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 45666655 333222211012466799999999998877642 22334 677777654 99988888654
No 92
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=28.24 E-value=58 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=25.9
Q ss_pred CceeEEEEcCCCceeeeeecc---cC-CEEEE--EcCCceeeEEEEEcCC
Q 028178 65 PGIDFTVTCPDGSIVRALKGT---SG-DKFVF--KAPRSGMYQFCFHNPT 108 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~---~~-g~~~f--~~~~~G~y~~Cf~n~~ 108 (212)
..+++.|+|.+|+.+...... .. +.+.. ..-..|.|+++.-...
T Consensus 29 ~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n~ 78 (283)
T PF08842_consen 29 KRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGNL 78 (283)
T ss_dssp -EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES-
T ss_pred eEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEECC
Confidence 469999999999966543221 12 34544 3455799998877643
No 93
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=27.88 E-value=1.7e+02 Score=18.85 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=30.2
Q ss_pred CceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCCCCeEEEEE
Q 028178 65 PGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFY 117 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~V~f~ 117 (212)
+++.+.+.+++.. ..-..+|.|.+.. ..|.|.+-|+-..-..+.+.+.
T Consensus 16 ~~a~V~~~~~~~~----~~Td~~G~F~i~~-~~g~~~l~is~~Gy~~~~~~i~ 63 (88)
T PF13715_consen 16 PGATVYLKNTKKG----TVTDENGRFSIKL-PEGDYTLKISYIGYETKTITIS 63 (88)
T ss_pred cCeEEEEeCCcce----EEECCCeEEEEEE-cCCCeEEEEEEeCEEEEEEEEE
Confidence 4566666665521 1224679999994 4799999998766543444333
No 94
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=2.7e+02 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=10.3
Q ss_pred CCceeEEEEcCCCce
Q 028178 64 HPGIDFTVTCPDGSI 78 (212)
Q Consensus 64 ~~~i~~~v~~p~g~~ 78 (212)
...+.|.++|.+..+
T Consensus 71 ~~~v~F~vtD~~~~v 85 (153)
T COG2332 71 SLKVSFVVTDGNKSV 85 (153)
T ss_pred CcEEEEEEecCCceE
Confidence 456888888766544
No 95
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.06 E-value=1.4e+02 Score=22.36 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=30.0
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028178 129 LAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRK 175 (212)
Q Consensus 129 ~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 175 (212)
..+-.+-++++..+....+.++++..+.+-.+.+.+..........+
T Consensus 35 lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 35 LMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334455778888888888888888777666665555554444433
No 96
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.78 E-value=3.8e+02 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028178 136 DPIYVRIAELREALETVSAE 155 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~ 155 (212)
+.++.+++++++++..+.+.
T Consensus 382 ~~l~~~i~~l~~~~~~~e~r 401 (440)
T PRK06798 382 KSIDNRVSKLDLKITDIDTQ 401 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 97
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=26.67 E-value=2e+02 Score=19.29 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=40.5
Q ss_pred CCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCC
Q 028178 43 EDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 43 ~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...|.|. |...+. .-.+--+.+.|++|+.--+-.-..+|.|.|.+ .+|.+.+=...+..
T Consensus 7 e~VItG~---V~~~G~----Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 7 ETVITGR---VTRDGE----PVGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred eEEEEEE---EecCCc----CCCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 4557777 443321 23456788899999886666667889999877 47788776666554
No 98
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=26.32 E-value=4.4e+02 Score=27.12 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=60.3
Q ss_pred eEEEEEeCCcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeee-cccCCEEEEEcCCceeeE
Q 028178 23 STLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK-GTSGDKFVFKAPRSGMYQ 101 (212)
Q Consensus 23 ~al~f~i~~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~-~~~~g~~~f~~~~~G~y~ 101 (212)
..+.|.|.+++-=-..|.+++....|+ -+....++.....-.+-.|.+.|.+|+.+.+.- -...|+...+--.+|+|+
T Consensus 1131 tPV~FtI~eeq~e~~~vtKeN~~~~Gs-vqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~VtdL~PGdYq 1209 (1531)
T COG4932 1131 TPVNFTISEEQDEAAKVTKENTLKPGS-VQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINVTDLAPGDYQ 1209 (1531)
T ss_pred ccceeEeeccCCceeEEeecccccccc-eEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEecccCCccee
Confidence 345566653222222333345556677 666655532211234678999999999997653 234578888888899999
Q ss_pred EEEEcCCCC----CeEEEEEEEEcc
Q 028178 102 FCFHNPTST----PEEVSFYIHIGH 122 (212)
Q Consensus 102 ~Cf~n~~~~----~~~V~f~i~~g~ 122 (212)
|-=.+-... ...+.|.|..+.
T Consensus 1210 FVETkAP~GY~LdatP~~FtI~~~q 1234 (1531)
T COG4932 1210 FVETKAPTGYILDATPTPFTIEFNQ 1234 (1531)
T ss_pred eeeecCCcceeeccccceeEEeccc
Confidence 987766542 345566666543
No 99
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.24 E-value=1.7e+02 Score=18.21 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHH
Q 028178 174 RKRVVFYTVSEY 185 (212)
Q Consensus 174 ~~rv~~~si~~i 185 (212)
..+.++|+++-+
T Consensus 37 ~~~~i~~~~~i~ 48 (59)
T PF09889_consen 37 KTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 100
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=26.22 E-value=3e+02 Score=21.07 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 028178 140 VRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYT 181 (212)
Q Consensus 140 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~s 181 (212)
.+...+...+..+..+..-+.....+-...++...++++|..
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~g 98 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGG 98 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777776666666666666666667776654
No 101
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=26.11 E-value=61 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 028178 134 HLDPIYVRIAELREALETVSAEQ 156 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q 156 (212)
+++|+++++++|+..++++.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999987764
No 102
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.86 E-value=1.6e+02 Score=20.46 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=11.0
Q ss_pred cccCCcchH-------HHHHHHHHHHHHHH
Q 028178 130 AKDEHLDPI-------YVRIAELREALETV 152 (212)
Q Consensus 130 a~~~~~~~l-------~~~l~~l~~~l~~i 152 (212)
+++++++.+ +.++..++..+.++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555555 44444444444444
No 103
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=25.39 E-value=90 Score=16.49 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=7.6
Q ss_pred CCccchhHHHHHHHHHHH
Q 028178 1 MRRRSAQVCLVIGFILSF 18 (212)
Q Consensus 1 ~~~~~~~~~~~~~~l~~l 18 (212)
||+.=---|+++.+.|++
T Consensus 1 Mrk~Lg~~~lAi~c~LL~ 18 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLF 18 (30)
T ss_dssp --SS-SSHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHH
Confidence 555444445655555444
No 104
>PHA03163 hypothetical protein; Provisional
Probab=25.30 E-value=1.8e+02 Score=19.73 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 172 STRKRVVFYTVSEYLLLAGAGALQVMYI 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+--.+|+++..+++++.++.=+.|+
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~ 80 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYM 80 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667899999999988887766554
No 105
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=25.04 E-value=62 Score=24.89 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=8.2
Q ss_pred CCccchhHHHH
Q 028178 1 MRRRSAQVCLV 11 (212)
Q Consensus 1 ~~~~~~~~~~~ 11 (212)
|||++.+++++
T Consensus 1 ~~~~~~~~~~~ 11 (176)
T PRK13838 1 MRRRRALLLLA 11 (176)
T ss_pred CCcchHHHHHH
Confidence 88888886654
No 106
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=24.72 E-value=1.6e+02 Score=19.90 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=25.6
Q ss_pred CCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCCC
Q 028178 74 PDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTST 110 (212)
Q Consensus 74 p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 110 (212)
|-+...+.-.+...|.++... +|.|++||.-....
T Consensus 49 ~p~~r~h~L~G~~~g~~Si~i--~~~~RliF~~~~~~ 83 (93)
T PF05015_consen 49 PPSNRLHKLKGDRKGQWSIRI--NGNWRLIFRFEDGD 83 (93)
T ss_pred CcCCCcccccCCCCCcEEEEe--CCCEEEEEEEeCCC
Confidence 445566676777888888765 56799999976663
No 107
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=24.65 E-value=2.3e+02 Score=28.13 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=28.1
Q ss_pred CceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEE
Q 028178 65 PGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFH 105 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~ 105 (212)
.++.+.+.+|+ ++=.+-.+...| +..|++.++|.|.+-+.
T Consensus 789 GgLsi~~~Gps-kvd~~~~d~~dGt~kV~ytPtepG~Y~I~i~ 830 (1113)
T KOG0518|consen 789 GGLSISVQGPS-KVDLNVEDREDGTCKVSYTPTEPGTYIINIK 830 (1113)
T ss_pred CceEEEEeCCc-ccccceeecCCCeEEEEEeCCCCceEEEEEE
Confidence 34788888888 333333344555 68899999999988766
No 108
>PHA03376 BARF1; Provisional
Probab=24.10 E-value=3.7e+02 Score=21.34 Aligned_cols=84 Identities=7% Similarity=0.064 Sum_probs=44.7
Q ss_pred HHHHhhcceEEEEEeCC---cceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccC----
Q 028178 15 ILSFIRHVSTLSITVTD---TECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSG---- 87 (212)
Q Consensus 15 l~~l~~~~~al~f~i~~---~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~---- 87 (212)
|+.++..+.++.-.+++ --|-+-.... ...+.+. +.=...+ ++.+.+.+-+ +++++.+- +..
T Consensus 11 La~l~~sg~pVta~VGEda~LsC~lnp~ss-a~~MrIr-WqKs~p~------~~~VvL~~~g--gdVv~~Qm-EyRGrtD 79 (221)
T PHA03376 11 LASCVAAGQAVTAFLGERVTLTSYWRRVSL-GPEIEVS-WFKLGPG------EEQVLIGRMH--HDVIFIEW-PFRGFFD 79 (221)
T ss_pred HHHHhccCcchhheeCCcEEEEecccCccC-CCceEEE-EEecCCC------CCCEEEEEcC--Ceeeeeee-ccccEEE
Confidence 44455666666666774 3699885553 4566666 4432221 2334444322 22222211 222
Q ss_pred -----CEEEE-----EcCCceeeEEEEEcCCC
Q 028178 88 -----DKFVF-----KAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 88 -----g~~~f-----~~~~~G~y~~Cf~n~~~ 109 (212)
|++++ ++..+|.|.-+|.-...
T Consensus 80 ~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 80 IHRSANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred EEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 44443 45778999999986554
No 109
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.94 E-value=48 Score=23.76 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.1
Q ss_pred CCceeeEEEEEcCCC
Q 028178 95 PRSGMYQFCFHNPTS 109 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~ 109 (212)
-..|.|++||.-...
T Consensus 114 LP~GsYRiCFrL~~~ 128 (145)
T TIGR02542 114 LPEGSYRICFRLFNA 128 (145)
T ss_pred CCCCceEEEEEEecc
Confidence 446999999985443
No 110
>PF14109 GldH_lipo: GldH lipoprotein
Probab=23.79 E-value=1.8e+02 Score=21.04 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=25.4
Q ss_pred CceeEEEEcCCCceeeeeec-ccCCEEE----EEcCCceeeEEEEEcCCC
Q 028178 65 PGIDFTVTCPDGSIVRALKG-TSGDKFV----FKAPRSGMYQFCFHNPTS 109 (212)
Q Consensus 65 ~~i~~~v~~p~g~~v~~~~~-~~~g~~~----f~~~~~G~y~~Cf~n~~~ 109 (212)
+.+.+.+.||+|+.+-+.-+ ..+-++- +..+.+|.|.|.+.--..
T Consensus 68 dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~Mr 117 (131)
T PF14109_consen 68 DTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAMR 117 (131)
T ss_pred eeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEeccc
Confidence 44677777777766543322 1222222 234678888888875543
No 111
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.63 E-value=62 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=8.9
Q ss_pred eeEEEEcCCCceee
Q 028178 67 IDFTVTCPDGSIVR 80 (212)
Q Consensus 67 i~~~v~~p~g~~v~ 80 (212)
..+.++||+|+.+.
T Consensus 105 ~~~~~~DPdG~~~~ 118 (122)
T cd08355 105 REFTARDPEGNLWT 118 (122)
T ss_pred EEEEEECCCCCEEE
Confidence 44667777776653
No 112
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=23.62 E-value=1e+02 Score=19.24 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=18.5
Q ss_pred cCCceeeEEEEEcCCCC-CeEEEEEE
Q 028178 94 APRSGMYQFCFHNPTST-PEEVSFYI 118 (212)
Q Consensus 94 ~~~~G~y~~Cf~n~~~~-~~~V~f~i 118 (212)
....|.|..+..|.... .+.+++.+
T Consensus 44 ~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 44 EEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred HHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 45679999999998865 45666654
No 113
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.41 E-value=2.3e+02 Score=18.67 Aligned_cols=30 Identities=7% Similarity=0.225 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028178 150 ETVSAEQRYLKALESRHRSTNESTRKRVVF 179 (212)
Q Consensus 150 ~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 179 (212)
+++...-+-+......++..+...+++.+|
T Consensus 34 ~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 34 EELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444555555566666655555533
No 114
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=23.00 E-value=1.7e+02 Score=20.63 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 028178 181 TVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212 (212)
Q Consensus 181 si~~i~vli~~~~~Qv~~lk~fF~~kk~~~~~ 212 (212)
.++-.++=.+.+++|+.+..+.|+.=+..|+|
T Consensus 8 ~~~~~~lQ~~l~~~Qik~f~~~~~~l~~~G~V 39 (109)
T PF06923_consen 8 LVIAWLLQILLGWFQIKNFNKAYKELRKKGRV 39 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 34444555678999999999988765444443
No 115
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.64 E-value=2.2e+02 Score=18.14 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 136 DPIYVRIAELREALETVSAEQRYLKALESRHRST 169 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~ 169 (212)
..+.+++.+++..++++.+..+-+..+...+...
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777665554444444443333
No 116
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=22.49 E-value=2.8e+02 Score=19.37 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=6.9
Q ss_pred cccCCcchHHHHHH
Q 028178 130 AKDEHLDPIYVRIA 143 (212)
Q Consensus 130 a~~~~~~~l~~~l~ 143 (212)
+++..+..+|..+.
T Consensus 34 ~~~q~L~kiE~~~~ 47 (102)
T PF01519_consen 34 SNNQRLTKIENKLD 47 (102)
T ss_dssp -HTTB-BHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33455666666665
No 117
>PHA02955 hypothetical protein; Provisional
Probab=21.99 E-value=1.1e+02 Score=24.30 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 028178 179 FYTVSEYLLLAGAGALQVMYIRRLFGKTA 207 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lk~fF~~kk 207 (212)
-|.++-+++++++.++ ++|+||-..-|-
T Consensus 180 ~w~ii~~v~ii~~~v~-l~yikR~i~~ky 207 (213)
T PHA02955 180 KWFIIYIVLCLLILII-LGYIYRTVRIKY 207 (213)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHheeeE
Confidence 5666666666777777 999999877663
No 118
>KOG3956 consensus Alpha 2-macroglobulin receptor-associated protein [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms; Lipid transport and metabolism; Defense mechanisms]
Probab=21.89 E-value=60 Score=26.99 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=11.5
Q ss_pred CCccchhHHH-HHHHHHHHhhcceE
Q 028178 1 MRRRSAQVCL-VIGFILSFIRHVST 24 (212)
Q Consensus 1 ~~~~~~~~~~-~~~~l~~l~~~~~a 24 (212)
||||+-|... ++++|++++.++.+
T Consensus 1 mvrsal~r~~~allllll~~G~~~~ 25 (359)
T KOG3956|consen 1 MVRSALMRNHFALLLLLLVIGSAHN 25 (359)
T ss_pred ChHHHHHHhhHHHHHHHHHhCcccc
Confidence 5555544443 44445555555443
No 119
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.96 E-value=1.1e+02 Score=16.09 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 028178 173 TRKRVVFYTVSEYLLLAGAGA 193 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~ 193 (212)
..++---|+++|+.+.+++..
T Consensus 9 ~~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 9 RRRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp ---------HHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHH
Confidence 345556899999988877654
No 120
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=20.90 E-value=2.7e+02 Score=18.55 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCceeeeee------cccCCEEE----EE-cCCceeeEEEEEc
Q 028178 66 GIDFTVTCPDGSIVRALK------GTSGDKFV----FK-APRSGMYQFCFHN 106 (212)
Q Consensus 66 ~i~~~v~~p~g~~v~~~~------~~~~g~~~----f~-~~~~G~y~~Cf~n 106 (212)
...|.|.|.+++.++.-. ....|... |+ .+++|+|.+.+..
T Consensus 35 ~~~f~l~d~~~~~V~~g~~~~~~~~~~s~~~~~~~DFS~~~~~G~Y~i~~~~ 86 (91)
T PF02927_consen 35 PSTFELVDASGGKVYTGKLSPAGVDPWSGEYVYRIDFSDLTTPGTYYIRVGG 86 (91)
T ss_dssp --EEEEEETTSBEEEEEEEEEEEECTTTTEEEEEEE-TT--S-EEEEEEETT
T ss_pred eeEEEEEcCCCCEEEEEEeeCccccCCCCCeEEEEEcCCcCCCEEEEEEECC
Confidence 457888887776666431 11233332 32 3678999998754
No 121
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=20.46 E-value=2.4e+02 Score=19.73 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028178 173 TRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKT 206 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 206 (212)
......|++++..++-++++..-.+..+.+++++
T Consensus 49 a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~ 82 (118)
T PF10256_consen 49 AFEPISWRNIIENILGCLTLGLSSLCFKTHYKRK 82 (118)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888777777666666566555543
No 122
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=20.43 E-value=1.6e+02 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=23.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 171 ESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201 (212)
Q Consensus 171 es~~~rv~~~si~~i~vli~~~~~Qv~~lk~ 201 (212)
+....+...+..+-+++.+++++||+++.-.
T Consensus 6 ~~~~~~~~~~~~~~il~s~~~~~~~v~~~~~ 36 (104)
T PF07116_consen 6 KEKRDNLKRFATIIILISLLFNIWQVIYVIN 36 (104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 3444567778888888888999999977443
No 123
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.36 E-value=81 Score=21.58 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=12.5
Q ss_pred eeEEEEcCCCceeee
Q 028178 67 IDFTVTCPDGSIVRA 81 (212)
Q Consensus 67 i~~~v~~p~g~~v~~ 81 (212)
-.+.++||+|+.+.-
T Consensus 102 r~~~~~DPdGn~iei 116 (120)
T cd09011 102 RVVRFYDPDKHIIEV 116 (120)
T ss_pred EEEEEECCCCCEEEE
Confidence 678999999998753
No 124
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.24 E-value=3.3e+02 Score=19.28 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=19.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 134 HLDPIYVRIAELREALETVSAEQRYLKA 161 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 161 (212)
.++.++..+..+...+..++.+..++-+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvE 36 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVE 36 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777787777777777776665543
No 125
>PHA03156 hypothetical protein; Provisional
Probab=20.12 E-value=2.6e+02 Score=18.98 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178 172 STRKRVVFYTVSEYLLLAGAGALQVMYI 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+--.+|.++..+++++..++=+.|.
T Consensus 52 sl~SFSSIWallN~~i~~~A~~ifL~y~ 79 (90)
T PHA03156 52 SIKTFSSIWAILNGIIFFCASLFFLRHL 79 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999999988887766553
Done!