BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028179
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 96 EDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLG 155
ED LG AF + A +SE+ LE + + YL + + S D+ ++++K P +L
Sbjct: 201 EDNQLG-AFLTKNHAIFSED-------LENLKTRVAYLHSKNFSKADVAQMVRKAPFLLN 252
Query: 156 CDIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVL 191
+E L N + K+ + K R+L++R P++L
Sbjct: 253 FSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLL 287
>sp|Q5ZL77|RIC8A_CHICK Synembryn-A OS=Gallus gallus GN=RIC8A PE=2 SV=1
Length = 539
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 32/129 (24%)
Query: 55 LKKWAIYSTAQVQSITLNDEERKKWEACRQALSTF------------------------- 89
LK IY+ + Q T +DEER++ + Q L F
Sbjct: 19 LKVLQIYNQEKSQCFTFDDEEREERKKMAQLLIKFLERELQPSCQVTCLESIRILSRDKY 78
Query: 90 ---NFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKL 146
F+TEE K L + G +SEE RE P+LE + E L L N+ S ++L
Sbjct: 79 CLEPFTTEEGLKTLSRHAG----IDYSEELIREVPDLEVILESLKCLCNIVFSSPRAQEL 134
Query: 147 LKKFPEVLG 155
+ V+G
Sbjct: 135 TAEARLVVG 143
>sp|Q9LJI2|CCX3_ARATH Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2
SV=1
Length = 643
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 8 SPLLSASPCPSAPDISTTTPNNVPLNVNLSNGLPPNAIRVP---WSSHVYLKKWAIYSTA 64
+PLL +P + P N PL + PP +P W+S+V AIYS
Sbjct: 304 TPLLPMQGSVFSPSVGEDMPMNTPLIETETEDGPPRLQSLPQWMWASNV-----AIYSN- 357
Query: 65 QVQSITLNDEERKKW 79
++++DE+R W
Sbjct: 358 HFAKVSVHDEDRPPW 372
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 122 ELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLR 181
+LE + + YL++ + S DI +++K P +L +E L N + K+ + K R
Sbjct: 214 DLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVE-RLDNRLGFFQKELELNVKKTR 272
Query: 182 NLLLRNPKVL 191
+L++R P++L
Sbjct: 273 DLVVRLPRLL 282
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 123 LETVSEILGYLRN-LSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLR 181
+E + LG+ +N L LS + L+ +FP +L +E ++ N+Q+ ++G E ++
Sbjct: 243 VERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLE-PVKENLQVCQVEFGFERNEVQ 301
Query: 182 NLLLRNPKVL 191
+ + PK+L
Sbjct: 302 QIAFKTPKIL 311
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 122 ELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLR 181
ELE + + YL++ + +I +++ + P +L +E L N + + G+ K +
Sbjct: 207 ELEALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVER-LDNRLGFFKNELGLSVKKTK 265
Query: 182 NLLLRNPKVLGYNVDCKGDCMAQC 205
+L++R P++L ++ + + C
Sbjct: 266 DLVIRFPRLLTGKLEPVKENLQVC 289
>sp|P0CAG5|VF407_ASFWA Uncharacterized protein B407L OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-094 PE=3 SV=1
Length = 412
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 49 WSSHVYLKKWAIYSTAQVQSITLNDEERKKWEACRQALSTFNFSTEEEDKILG--KAFGH 106
+S + KK+A +Q +I+ D + + + + ST++ D+++ ++ G
Sbjct: 165 YSLSTHRKKYAESEASQKTAISKRDR-KNHYAESEYSEKSIKPSTKQVDRLINHLRSNGD 223
Query: 107 IHSAYWSE---ERKRETPELETVSEILGYLRNLSLSDDDIR 144
+S Y E ERK + +LE ++ +L YL N +S DDI+
Sbjct: 224 PNSFYKKEHDYERKTKLVKLEKINMLLTYLGNEQISTDDIK 264
>sp|P0CAG4|VF407_ASFP4 Uncharacterized protein B407L OS=African swine fever virus (isolate
Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-096
PE=3 SV=1
Length = 412
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 49 WSSHVYLKKWAIYSTAQVQSITLNDEERKKWEACRQALSTFNFSTEEEDKILG--KAFGH 106
+S + KK+A +Q +I+ D + + + + ST++ D+++ ++ G
Sbjct: 165 YSLSTHRKKYAESEASQKTAISKRDR-KNHYAESEYSEKSIKPSTKQVDRLINHLRSNGD 223
Query: 107 IHSAYWSE---ERKRETPELETVSEILGYLRNLSLSDDDIR 144
+S Y E ERK + +LE ++ +L YL N +S DDI+
Sbjct: 224 PNSFYKKEHDYERKTKLVKLEKINMLLTYLGNEQISTDDIK 264
>sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1
Length = 480
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 67 QSITLNDEERKKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETV 126
Q I +ND ++ ++ R S FN + ++ ILG AF RETP ++
Sbjct: 298 QVIKINDYQKSRF-VNRVVASMFNTVSNKKIAILGFAFKK------DTGDTRETPAIDVC 350
Query: 127 SEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNN 165
+LG NLS+ D P+V I+ +L N
Sbjct: 351 QGLLGDKANLSIYD----------PQVTEDQIQRDLSMN 379
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 122 ELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLR 181
+LE + + YL++ + S DI ++K P +L +E L N + K+ + K R
Sbjct: 211 DLENLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVE-RLDNRLGFFQKELELSVKKTR 269
Query: 182 NLLLRNPKVL 191
+L++R P++L
Sbjct: 270 DLVVRLPRLL 279
>sp|A7GIK6|DNLJ_CLOBL DNA ligase OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=ligA PE=3 SV=1
Length = 664
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 109 SAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQI 168
SA++ + E PE ++ E++ ++RN+ L D K EV E E+ I
Sbjct: 222 SAFFYDVGYNEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEV-----EKEIEYIESI 276
Query: 169 LGK-DWGIEGKYLRNLLLRNPKVLGYNV 195
G+ D+ I+G + ++ ++LGY +
Sbjct: 277 RGELDYDIDGAVIVVDDIKTREILGYTI 304
>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory
syndrome virus (isolate Pig/United States/SD 01-08/2001)
PE=1 SV=2
Length = 3838
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 43/221 (19%)
Query: 11 LSASPCPSAPDISTTTPNNVPLNVNLSNGLPPNAIRVPW------SSHVYL-KKWAIYST 63
+S P P A + T +P LP A R P+ S VY KK+ I++
Sbjct: 147 VSDQPFPGATHVLTNSP------------LPQRACRQPFCPFEEAHSDVYRWKKFVIFTD 194
Query: 64 AQVQSITLNDEERKKWEA---CRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRET 120
+ + N R W AL E + +IL ++F H ++ E+
Sbjct: 195 S-----SPNGRFRMMWTPESDDSAALEVLPPELERQVEILTRSFPAHHPINLADWELTES 249
Query: 121 PE----LETVSEILGYLRNLSLSDDD--IRKLLKKFPEVLGCDIEHELRNNVQILGKDWG 174
PE T ++N ++ D + L + EV C E L N + K WG
Sbjct: 250 PENGFSFGTSHSCGHIVQNPNVFDGKCWLTCFLGQSAEV--CYHEEHLANALGYQTK-WG 306
Query: 175 IEGKYL-RNLLLRNPKVLGYNVDCKGDCMAQ---CTRCWVR 211
+ GKYL R L +R + + VD G + C++ WVR
Sbjct: 307 VHGKYLQRRLQVRGMRAV---VDPDGPIHVEALSCSQSWVR 344
>sp|B1ING1|DNLJ_CLOBK DNA ligase OS=Clostridium botulinum (strain Okra / Type B1) GN=ligA
PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 109 SAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQI 168
SA++ + E PE ++ E++ +++N+ L D K EV E E+ I
Sbjct: 222 SAFFYDVGYNEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEV-----EKEIEYIESI 276
Query: 169 LGK-DWGIEGKYLRNLLLRNPKVLGYNV 195
G+ D+ I+G + ++ ++LGY +
Sbjct: 277 RGELDYDIDGAVIVVDDIKTREILGYTI 304
>sp|C1FLS8|DNLJ_CLOBJ DNA ligase OS=Clostridium botulinum (strain Kyoto / Type A2)
GN=ligA PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 109 SAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQI 168
SA++ + E PE ++ E++ +++N+ L D K EV E E+ I
Sbjct: 222 SAFFYDVGYNEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEV-----EKEIEYIESI 276
Query: 169 LGK-DWGIEGKYLRNLLLRNPKVLGYNV 195
G+ D+ I+G + ++ ++LGY +
Sbjct: 277 RGELDYDIDGAVIVVDDIKTREILGYTI 304
>sp|A5I6Z7|DNLJ_CLOBH DNA ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=ligA PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 109 SAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQI 168
SA++ + E PE ++ E++ +++N+ L D K EV E E+ I
Sbjct: 222 SAFFYDVGYNEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEV-----EKEIEYIESI 276
Query: 169 LGK-DWGIEGKYLRNLLLRNPKVLGYNV 195
G+ D+ I+G + ++ ++LGY +
Sbjct: 277 RGELDYDIDGAVIVVDDIKTREILGYTI 304
>sp|A7FYL7|DNLJ_CLOB1 DNA ligase OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=ligA PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 109 SAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQI 168
SA++ + E PE ++ E++ +++N+ L D K EV E E+ I
Sbjct: 222 SAFFYDVGYNEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEV-----EKEIEYIESI 276
Query: 169 LGK-DWGIEGKYLRNLLLRNPKVLGYNV 195
G+ D+ I+G + ++ ++LGY +
Sbjct: 277 RGELDYDIDGAVIVVDDIKTREILGYTI 304
>sp|Q06851|CIPA_CLOTH Cellulosomal-scaffolding protein A OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=cipA PE=1 SV=2
Length = 1853
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 12 SASPCPSAPDISTTTPNNVPLNVNLSNGL 40
SA+ P+ P + T TP N P N +S L
Sbjct: 341 SATATPTRPSVPTNTPTNTPANTPVSGNL 369
>sp|Q65173|VF407_ASFB7 Uncharacterized protein B407L OS=African swine fever virus (strain
Badajoz 1971 Vero-adapted) GN=Ba71V-084 PE=3 SV=1
Length = 407
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 49 WSSHVYLKKWAIYSTAQVQSITLNDEERKKWEACRQALSTFNFSTEEEDKILG--KAFGH 106
+S + KK+A +Q + + D + + + + ST++ D+++ ++ G
Sbjct: 160 YSLSTHRKKYAESEASQKTAFSKRDR-KNHYAESEYSEKSIKPSTKQVDRLINHLRSNGD 218
Query: 107 IHSAYWSE---ERKRETPELETVSEILGYLRNLSLSDDDIR 144
+S Y + ERK + +LE ++ +L YL N +S DDI+
Sbjct: 219 PNSFYKKDHDYERKTKLVKLEKINMLLTYLGNEQISTDDIK 259
>sp|Q8TLL3|GLMS_METAC Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=glmS PE=3 SV=3
Length = 618
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 19/59 (32%)
Query: 126 VSEILG--YLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDW--GIEGKYL 180
VSE+ G YL+ L+LS+D+IRKL + ++L C G W G+ GKYL
Sbjct: 280 VSELEGDIYLKELNLSEDEIRKLAR--VQILAC-------------GTSWHAGLLGKYL 323
>sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0508 PE=4
SV=1
Length = 599
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 119 ETPELETVSEILGYLRNL---SLSDDDIRKLLKKFPEVLGCDIEHELRNNV 166
E P V +L R L LSD+D+ K+LKK EVL D+E + +
Sbjct: 135 ENPSFVIVPALLSRCRILYFKKLSDEDLMKILKKATEVLNIDLEESVEKAI 185
>sp|Q07968|F13B_MOUSE Coagulation factor XIII B chain OS=Mus musculus GN=F13b PE=1 SV=2
Length = 669
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 157 DIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDCK---GDCMAQCTRCWVRF 212
D++H RNN+Q+ W EGK L L+ GYN+ + AQC R VR+
Sbjct: 458 DVDHMNRNNIQL---KWKYEGKILHGDLIDFVCKQGYNLSPSIPLSEISAQCNRGDVRY 513
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,174,517
Number of Sequences: 539616
Number of extensions: 3636246
Number of successful extensions: 11041
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 11024
Number of HSP's gapped (non-prelim): 55
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)