BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028181
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
Length = 253
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 112/119 (94%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQH+K+RQRVVATAVTYMRR YTRKS+TEY+P LVAPTCLYLA KAEES V A+LLVFY
Sbjct: 51 LAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFY 110
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
+KK+Y+DEK+RYE+KDILEMEMK+LEALN+YLVVFHPYRSL +FLQD+G+ND +MTHL+
Sbjct: 111 MKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLT 169
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2
SV=1
Length = 257
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/115 (81%), Positives = 104/115 (90%), Gaps = 1/115 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQ VKVRQRV+ATAVTY RR YTRKSMTEYDP LVAPTCLYLASK EESTVQARLLVFY
Sbjct: 51 LAQQVKVRQRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFY 110
Query: 154 IKKI-YSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDIN 207
IKK+ SDEKYR+E+KDILEMEMK+LEAL+YYLVV+HPYR L+Q LQDAG+ D+
Sbjct: 111 IKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITDLT 165
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2
Length = 253
Score = 189 bits (481), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 104/119 (87%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQH+KVRQRVVATA+TYMRR Y RKSM E++P LVA TCLYLASKAEES VQAR LVFY
Sbjct: 51 LAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFY 110
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
IK++Y DE +YE+KDIL MEMK+LEAL+YYLVVFHPYRSL +FLQDA +ND+NM ++
Sbjct: 111 IKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALNDVNMNQIT 169
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 90 IYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARL 149
+ +NL +K+RQR ++TA+ Y +R Y + S + +P LVA TCLYL+SK EE QA+
Sbjct: 47 VIQNLGNALKLRQRAISTAIVYFKRFYLKNSFVDCEPRLVAVTCLYLSSKVEECITQAKK 106
Query: 150 LVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN 204
+K+I D + Y + DILE E +LE L++ L+++HPY+SL +LQ +G++
Sbjct: 107 CAAKMKEI--DHSFNYLMNDILECEFFVLEELDFCLIIYHPYKSLPFYLQSSGLD 159
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 54 TNSFWTKKTWMWRNLLTEKRASLLKITSS-----LRCRCPTIYRNLAQHVKVRQRVVATA 108
+FW ++ + +L ++R LK S L+ + + L +H+K+RQ+V+ATA
Sbjct: 2 AGNFWQSSHYL-QWILDKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATA 60
Query: 109 VTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE-------STVQARLLVFYIKKIYSDE 161
Y +R Y R S+ DP L+APTC++LASK EE S + A V + Y+
Sbjct: 61 TVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRFSYASP 120
Query: 162 K-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 121 KEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV 166
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV 171
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 171
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 171
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y++ +LE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYKMNHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 171
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 171
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 171
>sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3
SV=1
Length = 267
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 54 TNSFWTK---KTWMW--RNLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRV 104
+FW + W+ ++LL E++ LL + + + N L + +K+RQ+V
Sbjct: 2 AGNFWQSSHSQQWILDKQDLLRERQHDLLSLNEDEYQKVFIFFANVIQVLGEQLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLLVF---YIKKIYS 159
+ATA Y +R Y R S+ DP L+APTC+ LASK EE V +RL+ IK +S
Sbjct: 62 IATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFS 121
Query: 160 ---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMT 209
+++ Y ILE E +LE L+ L+V+ PYR L+Q +QD G D +T
Sbjct: 122 YAYTQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT 174
>sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1
Length = 267
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 67 NLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRVVATAVTYMRRCYTRKSMT 122
+LL E++ LL + + + N L + +K+RQ+V+ATA Y +R Y R S+
Sbjct: 20 DLLRERQHDLLALNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLK 79
Query: 123 EYDPHLVAPTCLYLASKAEESTV--QARLLVF---YIKKIYS---DEKYRYEVKDILEME 174
DP L+APTC+ LASK EE V +RL+ IK +S +++ Y ILE E
Sbjct: 80 NIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECE 139
Query: 175 MKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMT 209
+LE L+ L+V+ PYR L+Q +QD G D +T
Sbjct: 140 FYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT 174
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 54 TNSFWTK---KTWMW--RNLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRV 104
+FW + W+ ++L+ E++ L +T + + N L + +K+RQ+V
Sbjct: 2 AGNFWQSSHHQQWILDKQDLIRERQHDLKNLTEEEYQKIFMFFANVIQVLGEQLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLLV---FYIKKIYS 159
+ATA Y +R Y R S+ DP L+APTC+ LASK EE V +RL+ IK +S
Sbjct: 62 IATATVYFKRFYARNSLKCIDPLLLAPTCILLASKVEEFGVISNSRLITTCQTVIKNKFS 121
Query: 160 ---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMT 209
+++ Y ILE E +LE L+ L+V+ PYR L+Q +QD G D +T
Sbjct: 122 YAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLIQDIGQEDQLLT 174
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 89 TIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--Q 146
I + L + +K+RQ+V+ATA Y +R Y R S+ DP L+APTC+ L+SK EE V
Sbjct: 46 NIIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLSSKVEEFGVISN 105
Query: 147 ARLLV---FYIKKIYS---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
+RL+ IK +S +++ Y ILE E +LE L+ L+V+ PYR L+Q +QD
Sbjct: 106 SRLITTCQTVIKNKFSYAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLMQD 165
Query: 201 AGMNDINMT 209
G + +T
Sbjct: 166 IGQEEQLLT 174
>sp|Q4P101|SSN8_USTMA RNA polymerase II holoenzyme cyclin-like subunit OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SSN8 PE=3 SV=1
Length = 393
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 54 TNSFWTK---KTWMW-RNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRV 104
+ ++W W+ R L R L+ + L C ++ + + + + +RQRV
Sbjct: 2 SANYWASTQCNNWLLDRPQLELARKEDLRYATRLECAALGVFFSNLLSLICKRLNLRQRV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYR 164
A+A + RR + + S + DP LV TC+Y+A+K EES + + V + +++ +R
Sbjct: 62 TASANVFFRRFFAKNSYSALDPFLVCATCVYVAAKVEESPIHIKSAVAEATRSFTEHGFR 121
Query: 165 YEVKD---ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAG 202
D + EME +LE + + +V+FH YRSL+ +D G
Sbjct: 122 GMPTDHSSLAEMEFYLLEEMEFDMVLFHSYRSLIVMFEDYG 162
>sp|Q6CAC7|SSN8_YARLI RNA polymerase II holoenzyme cyclin-like subunit OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SSN8 PE=3 SV=1
Length = 280
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 83 LRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 142
+R T+ L Q++ +RQR++ATA Y+ R +T+ E +P+LV T +Y+A K EE
Sbjct: 48 VRVYLHTLIHLLGQNLSIRQRILATAEVYLTRFHTKVPFGEINPYLVVATAVYVACKVEE 107
Query: 143 STVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA 201
R + + ++ D ++ I E E ++E L YLV+FHPY+SL+Q + DA
Sbjct: 108 HPQHIRTITSEARSLWPD-YISHDPTKIAECEFYLIEELGTYLVIFHPYKSLMQ-ISDA 164
>sp|Q2GVK1|SSN8_CHAGB RNA polymerase II holoenzyme cyclin-like subunit OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=SSN8 PE=3 SV=2
Length = 364
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 66 RNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRVVATAVTYMRRCYTRKS 120
R L ++ L+++ + R IY N L++ + +RQ+V+ATA Y++R YTR +
Sbjct: 25 RQRLDDEDPGLVQMFPLPQLRHLNIYFNQQINRLSKRIGLRQQVMATAQVYLKRFYTRIA 84
Query: 121 MTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEA 180
+ + +P+LV T LYLA K EE R++ + ++ + + ++ + E E ++
Sbjct: 85 IRQTNPYLVLTTVLYLACKMEECPQHIRMMTQEARSLWPSDLHGHDPARVGECEFSLISE 144
Query: 181 LNYYLVVFHPYRSLVQFLQDAGMNDINMT 209
++ L+V PYRSL+ + G+ M+
Sbjct: 145 MHSNLIVHQPYRSLLGVQDEFGLTQDEMS 173
>sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=SSN8 PE=3 SV=1
Length = 363
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LA+++ +RQ+ +ATA YM+R YTR + +P LV T +YLA K EE + R +
Sbjct: 58 LAKNLSIRQQAIATAQVYMKRFYTRVEIRSTNPTLVLVTAVYLACKMEEMPLHIRNVSLE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM-NDINMTHLS 212
KK++ E E+ I E E ++ ++ L+V PYR+L QD + ND ++ +S
Sbjct: 118 AKKVWPMETPSLEIAKIGECEFWLISEMSAQLIVHQPYRTLTALQQDFQLANDDHVLAVS 177
>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like subunit OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=SSN8 PE=3 SV=2
Length = 346
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + +RQ +ATA Y+ R TR S+ E + +L+ TCLY+A K EE RL++
Sbjct: 64 LGRRLNIRQVALATAEIYLNRFLTRVSLKEINVYLLVTTCLYVACKIEECPQHIRLIISE 123
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
+ ++ E ++V + E E ++E ++ YL + HPY+SL+Q
Sbjct: 124 ARNLWP-EYIPHDVTKLAEFEFYLIEEMDSYLFLHHPYKSLIQI 166
>sp|Q5A4H9|SSN8_CANAL RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN8 PE=3
SV=1
Length = 434
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
++R + L + + +RQ +ATA Y+ R TR S+ E + +L+ TC+Y+A K E
Sbjct: 52 NMRIYLHNLLIKLGRRLNIRQIALATAEIYLTRFLTRVSLKEINVYLLITTCIYVACKIE 111
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
E RL++ + I+ E ++V + E E ++E ++ YL++ HPY+SL+Q
Sbjct: 112 ECPQHIRLILSEARNIWP-EYIPHDVTKLAEFEFYLIEEMDSYLLLHHPYKSLMQI 166
>sp|Q9C1M4|SSN8_GIBMO RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella
moniliformis GN=SSN8 PE=1 SV=1
Length = 319
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 56 SFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRVVATAVT 110
SF ++ R L E A L+++ + R IY N LA+ + +RQ+ +ATA
Sbjct: 15 SFTKEQLVTMRQKLEEDNAELVRMFPLPQQRRLYIYFNQQLIRLAKRLTIRQQSMATAQV 74
Query: 111 YMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDI 170
YM+R Y++ + +P+LV T +YLA K EES RL+V ++++ D + +
Sbjct: 75 YMKRFYSKVEIRRTNPYLVIATAIYLACKIEESPQHIRLIVTEARQMWGD-LVAIDTSKL 133
Query: 171 LEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205
E E ++ + L+VF PYR++ + + D
Sbjct: 134 GECEFFMISEMRSQLIVFQPYRTITALRNELSLVD 168
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 60 KKTWMW-RNLLTEKRASLLKITSSLRCRCP-------TIYRN-----LAQHVKVRQRVVA 106
+K W++ ++ L RA L +L P IY N L + + +RQ+ +A
Sbjct: 11 RKHWLFTKDELAAMRAKLEAEEPNLVASFPLPQLRHLNIYFNQQINRLGKRMGLRQQALA 70
Query: 107 TAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIY-SDEKYRY 165
TA Y++R YT+ + +PH V T LYLA K EE RL+ + + +D + +
Sbjct: 71 TAQVYIKRFYTKVEIRRTNPHHVLVTALYLACKMEECPQHIRLMANEARGFWPTDFQSQT 130
Query: 166 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM--NDINMT 209
EV I E E ++ ++ +L+V PYR+L + G+ D+N+
Sbjct: 131 EVARIGECEFYLISEMSSHLIVHSPYRTLTSLQGELGLAQEDVNLA 176
>sp|Q6BYF8|SSN8_DEBHA RNA polymerase II holoenzyme cyclin-like subunit OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SSN8 PE=3 SV=2
Length = 345
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + VRQ +ATA YM R + S+ E + +L+ TCLY A K EE RL+
Sbjct: 64 LGRRLNVRQIALATAEIYMSRFLIKVSLKEINVYLLVTTCLYAACKIEECPQHIRLITSE 123
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
+ ++ E +V + E E ++E ++ +LV+ HPYRSL+Q
Sbjct: 124 ARNLWP-EYIPQDVTKLAEFEFYLIEEMDSFLVLHHPYRSLLQI 166
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1
Length = 726
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 15/130 (11%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 36 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVE 95
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 96 E---QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 152
Query: 190 PYRSLVQFLQ 199
P+ +V+ Q
Sbjct: 153 PHTHVVKCTQ 162
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1
Length = 725
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 15/130 (11%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 35 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVE 94
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 95 E---QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 151
Query: 190 PYRSLVQFLQ 199
P+ +V+ Q
Sbjct: 152 PHTHVVKCTQ 161
>sp|Q6CP20|SSN8_KLULA RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SSN8 PE=3 SV=1
Length = 304
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ + TA Y+ R R S+ E + +L+ TC+YLA K E
Sbjct: 71 NLRIYCYFLIMKLGRRLNIRQCALVTAHVYLSRFLLRASVREVNLYLLITTCIYLACKVE 130
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
E R LV + ++ E +V + E E ++E L YL+V HPYRSL Q
Sbjct: 131 ECPQHIRTLVNEARSLWP-EFIPPDVTKVTEFEFYLIEELQSYLIVHHPYRSLEQI 185
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 15/130 (11%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 36 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRNSVAPAALFLAAKVE 95
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 96 E---QPKKLEHVIKVAHACLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 152
Query: 190 PYRSLVQFLQ 199
P+ +V+ Q
Sbjct: 153 PHTHVVKCTQ 162
>sp|Q6T8E9|CCNT1_BOVIN Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 15/130 (11%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 36 SNRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRNSVAPAALFLAAKVE 95
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 96 E---QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 152
Query: 190 PYRSLVQFLQ 199
P+ +V+ Q
Sbjct: 153 PHTHVVKCTQ 162
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ +ATA Y+ R + S+ E + +++ TC+YLA K E
Sbjct: 73 NLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVE 132
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ 199
E R LV + ++ E + + E E +LE L YL+V HPY+SL Q +Q
Sbjct: 133 ECPQYIRTLVSEARTLWP-EFIPPDPTKVTEFEFYLLEELESYLIVHHPYQSLKQIVQ 189
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3
Length = 724
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 47 ISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITS----SLRCRCPTIYRNLAQHVKVRQ 102
+ G R+ N W + R L + + S S R + + +++ Q + V Q
Sbjct: 1 MEGERKNNNKRW----YFTREQLENSPSRRFGVDSDKELSYRQQAANLLQDMGQRLNVSQ 56
Query: 103 RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYS--- 159
+ TA+ YM R Y +S T++ + +AP L+LA+K EE Q + L IK ++
Sbjct: 57 LTINTAIVYMHRFYMIQSFTQFHRYSMAPAALFLAAKVEE---QPKKLEHVIKVAHTCLH 113
Query: 160 ---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ 199
E Y +V+D++ +E IL+ L + L + HP+ +V+ Q
Sbjct: 114 PQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQ 162
>sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1
Length = 286
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
+A + + +V A A+ Y++R Y + S+ +Y LV +CL++A K E++ +
Sbjct: 65 IAMALNLPDKVSAPAIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDID----- 119
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN 204
Y + DI +E+ ILE+LN+ L+V+HP+R + ++ D N
Sbjct: 120 ----YYSNITKASPSDITNLEIIILESLNFNLIVYHPFRPMYGYILDINDN 166
>sp|O94503|SRB11_SCHPO RNA polymerase II holoenzyme cyclin-like subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srb11 PE=1 SV=1
Length = 228
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 90 IYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE-YDPHLVAPTCLYLASKAEESTVQAR 148
+ + +++RQRV+ATA+ +RR +K+ + + + TC+YL+ K EE V R
Sbjct: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97
Query: 149 LLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN 204
+ ++S K + +I E+E +I+ L+ +L+V HPY SL Q D +N
Sbjct: 98 TICNEANDLWS-LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN 152
>sp|A1C7R6|SSN8_ASPCL RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ssn8 PE=3 SV=2
Length = 302
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSL 194
+ ++ E +V + E E ++ +N L+V HPYR+L
Sbjct: 118 ARSLWP-EFITPDVSKLGECEFSLISEMNSQLIVHHPYRTL 157
>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SSN8 PE=3 SV=1
Length = 339
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ +ATA Y+ R + S+ E + +L+ TC+YLA K E
Sbjct: 91 NLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLLKASVREVNLYLLVTTCVYLACKVE 150
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA 201
E R LV + ++ E + + E E ++E L YL+V HPY+S+ Q ++
Sbjct: 151 ECPQYIRTLVSEARSLWP-EFIPPDPTKVTEFEFYLIEELQCYLIVHHPYKSMEQIVEAL 209
Query: 202 GMNDINMTHLS 212
+T S
Sbjct: 210 KEEPFKLTFTS 220
>sp|Q2UDB2|SSN8_ASPOR RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2
Length = 301
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVVTTAFYLACKMEECPQHIRFVVAE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
+ + E +V + E E ++ +N L+V HPYR+L +
Sbjct: 118 ARNFWP-EFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSEL 160
>sp|Q4WZT9|SSN8_ASPFU RNA polymerase II holoenzyme cyclin-like subunit OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=ssn8 PE=3 SV=1
Length = 302
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
+ ++ E +V + E E ++ +N L+V HPYR+L +
Sbjct: 118 ARSLWP-EFITPDVSKLGECEFSLISEMNSQLIVHHPYRTLSEL 160
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 77 LKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYL 136
LK + LR T ++L +KV Q +ATA+ + R + R+S + D +A C++L
Sbjct: 53 LKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFL 112
Query: 137 ASKAEESTVQARLLVFY------------IKKIYSDEKYRYEVKDILEMEMKILEALNYY 184
A K EE+ + ++F +KI E Y + + IL E +L L +
Sbjct: 113 AGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQKEVYEQQKELILNGEKIVLSTLGFD 172
Query: 185 LVVFHPYRSLVQFLQ 199
L V+HPY+ LV+ ++
Sbjct: 173 LNVYHPYKPLVEAIK 187
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 56 SFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRC 115
S++ + + N L+ + LK S LR T ++L +KV Q +ATA+ + R
Sbjct: 36 SWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRF 95
Query: 116 YTRKSMTEYDPHLVAPTCLYLASKAEES--TVQARLLVFY----------IKKIYSDEKY 163
+ R+S + D +A C++LA K EE+ ++ +L+ Y +++I E Y
Sbjct: 96 FLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKEVY 155
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ 199
+ + IL E +L L + L V HPY+ LV+ ++
Sbjct: 156 EQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIK 191
>sp|Q3ZBL9|CCNH_BOVIN Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1
Length = 320
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 104 VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163
VV TA Y +R Y S+ EY P ++ TC +LA K +E V + V +++ S
Sbjct: 79 VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ 136
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
++ ILE E+ +++ LN++L+V +PYR FL D
Sbjct: 137 EKTLEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173
>sp|Q4R7U4|CCNH_MACFA Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1
Length = 323
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 104 VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163
VV TA Y +R Y S+ EY P ++ TC +LA K +E V + V +++ S
Sbjct: 79 VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ 136
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
++ ILE E+ +++ LN++L+V +PYR FL D
Sbjct: 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173
>sp|P51946|CCNH_HUMAN Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1
Length = 323
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 104 VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163
VV TA Y +R Y S+ EY P ++ TC +LA K +E V + V +++ S
Sbjct: 79 VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ 136
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
++ ILE E+ +++ LN++L+V +PYR FL D
Sbjct: 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173
>sp|Q9R1A0|CCNH_RAT Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2
Length = 323
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 104 VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163
VV TA Y +R Y S+ EY P ++ TC +LA K +E V + V +++ S
Sbjct: 79 VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ 136
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
++ ILE E+ +++ LN++L+V +PYR FL D
Sbjct: 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173
>sp|Q61458|CCNH_MOUSE Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2
Length = 323
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 104 VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163
VV TA Y +R Y S+ EY P ++ TC +LA K +E V + V +++ S
Sbjct: 79 VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ 136
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
++ ILE E+ +++ LN++L+V +PYR FL D
Sbjct: 137 ERALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173
>sp|Q0CV29|SSN8_ASPTN RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1
Length = 301
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRTTTRQQALATAQVYIKRFYTKNDIRHTNPYLVITTAFYLACKMEECPQHIRFVVAE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
+ + E +V + E E ++ +N L+V HPYR+L +
Sbjct: 118 ARSFWP-EFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSEL 160
>sp|P37366|CCL1_YEAST Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CCL1 PE=1 SV=1
Length = 393
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
+AQH+ + VVATA+++ RR + S+ + DP + T ++LA K+E ++
Sbjct: 127 IAQHLNLPTEVVATAISFFRRFFLENSVMQIDPKSIVHTTIFLACKSEN---------YF 177
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
I +K + +L+ E K+LE+L + L+ HPY+ L F D
Sbjct: 178 ISVDSFAQKAKSTRDSVLKFEFKLLESLKFSLLNHHPYKPLHGFFLD 224
>sp|Q1EAW8|SSN8_COCIM RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides
immitis (strain RS) GN=SSN8 PE=3 SV=2
Length = 303
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 86 RCPTIYRN-----LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKA 140
R IY N LA+ + VRQ+ +ATA Y++R YT+ + +P+LV T YLA K
Sbjct: 45 RLFNIYVNQQLIKLAKRLNVRQQALATAQVYVKRFYTKVEIRRTNPYLVLTTAFYLACKI 104
Query: 141 EESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
EE RL++ + ++ E + I E E ++ +N L+V HPYR+L +
Sbjct: 105 EECPQHIRLVLGEARGLWP-EFIAPDSAKIGECEFWLISEMNSQLIVHHPYRTLSEL 160
>sp|Q10D80|CCH11_ORYSJ Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1
Length = 330
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 99 KVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIY 158
K ++ ATA+ Y +R Y + S+ E+ P + TC+Y + K EE+ V A L K I
Sbjct: 95 KFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLTCIYSSCKVEENHVSAEELG---KGIQ 151
Query: 159 SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
D + IL EM +L++L++ L+V+ PYRS+ F+ D
Sbjct: 152 QDHQI------ILNNEMIVLKSLDFDLIVYAPYRSIEGFVDD 187
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + VRQ +ATA Y+ R + S+ E + +L+ TC+YLA K E
Sbjct: 72 NLRIYCYFLIMKLGRRLNVRQYALATAHVYLARFCLKASIREVNLYLLVTTCIYLACKVE 131
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
E R LV + ++ E + + E E ++E L Y++V +PYR++ Q
Sbjct: 132 ECPQHIRTLVNEARSLWP-EFVPPDPTKVTEFEFYLIEELQSYMIVHYPYRAMEQI 186
>sp|O60583|CCNT2_HUMAN Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2
Length = 730
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 33/178 (18%)
Query: 36 SGKGGVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCR--CPTIYRN 93
SG+G +W F+T++ N T R ++ L CR + +
Sbjct: 3 SGRGASSRW------------FFTRE--QLEN--TPSRRCGVEADKELSCRQQAANLIQE 46
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
+ Q + V Q + TA+ YM R Y S T+++ ++++ T L+LA+K EE QAR L
Sbjct: 47 MGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE---QARKLEHV 103
Query: 154 IKKIYS---------DEK---YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ 199
IK ++ D K Y + ++++ +E +L+ L + + + HP+ +V+ Q
Sbjct: 104 IKVAHACLHPLEPLLDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDVVKCTQ 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,654,616
Number of Sequences: 539616
Number of extensions: 2785708
Number of successful extensions: 6624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 6412
Number of HSP's gapped (non-prelim): 197
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)