Query 028181
Match_columns 212
No_of_seqs 183 out of 1129
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgf_B Cyclin-C; protein kinas 100.0 6.1E-34 2.1E-38 248.0 16.5 154 52-205 2-172 (285)
2 1zp2_A RNA polymerase II holoe 100.0 6E-31 2E-35 222.7 12.3 144 57-205 1-149 (235)
3 2ivx_A Cyclin-T2; transcriptio 100.0 2.6E-29 8.8E-34 214.9 14.7 147 60-206 2-162 (257)
4 2i53_A Cyclin K; cell cycle, t 100.0 2.6E-28 8.8E-33 208.5 15.2 147 59-205 11-166 (258)
5 1jkw_A Cyclin H; cell cycle, c 99.9 5.1E-28 1.7E-32 214.2 11.8 142 57-201 2-174 (323)
6 2pk2_A Cyclin-T1, protein TAT; 99.9 1.3E-28 4.3E-33 221.0 7.9 145 61-205 10-168 (358)
7 1c9b_A General transcription f 99.9 5E-24 1.7E-28 176.6 12.6 114 84-206 5-118 (207)
8 2cch_B Cyclin A2, cyclin-A; co 99.9 1.4E-23 4.9E-28 179.9 9.8 124 78-208 33-157 (260)
9 2w96_A G1/S-specific cyclin-D1 99.9 6.3E-23 2.1E-27 176.9 12.6 122 78-206 51-173 (271)
10 1g3n_C V-cyclin; cyclin-depend 99.9 9E-23 3.1E-27 174.7 12.8 122 78-206 45-167 (257)
11 2b9r_A Human cyclin B1; cell c 99.9 1.5E-22 5.2E-27 174.5 13.2 121 78-205 32-153 (269)
12 3g33_B CCND3 protein; Ser/Thr 99.9 1.9E-22 6.5E-27 177.2 10.1 122 78-206 65-187 (306)
13 2f2c_A Cyclin homolog, V-cycli 99.9 2.6E-22 9E-27 171.5 10.1 121 79-206 47-168 (254)
14 1w98_B Cyclin E, G1/S-specific 99.9 1.1E-21 3.9E-26 170.3 12.7 122 78-206 44-167 (283)
15 1f5q_B Gamma herpesvirus cycli 99.9 2.2E-21 7.4E-26 166.4 10.6 118 82-206 47-165 (252)
16 1ais_B TFB TFIIB, protein (tra 99.8 2.9E-20 9.9E-25 153.1 11.5 114 84-206 9-124 (200)
17 3k7a_M Transcription initiatio 99.7 1.6E-18 5.6E-23 154.5 7.5 117 84-210 126-254 (345)
18 4bbr_M Transcription initiatio 99.6 9.3E-15 3.2E-19 130.3 10.1 113 85-206 127-251 (345)
19 1ais_B TFB TFIIB, protein (tra 98.6 2.3E-07 7.9E-12 75.6 10.3 90 88-186 109-198 (200)
20 1c9b_A General transcription f 98.3 4.6E-06 1.6E-10 68.2 9.8 87 88-183 103-189 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.6 0.00056 1.9E-08 59.4 11.0 104 87-200 77-184 (293)
22 4bbr_M Transcription initiatio 96.9 0.00013 4.4E-09 64.7 0.0 68 88-155 236-303 (345)
23 3k7a_M Transcription initiatio 96.8 0.00018 6E-09 63.7 0.0 67 88-154 236-302 (345)
24 1zp2_A RNA polymerase II holoe 95.6 0.02 6.9E-07 47.3 6.3 86 88-183 135-220 (235)
25 3rgf_B Cyclin-C; protein kinas 95.4 0.028 9.4E-07 48.0 6.5 103 88-202 158-260 (285)
26 2b9r_A Human cyclin B1; cell c 94.8 0.026 8.9E-07 47.7 4.4 57 88-144 139-195 (269)
27 2cch_B Cyclin A2, cyclin-A; co 94.7 0.057 2E-06 45.2 6.4 85 88-181 140-226 (260)
28 2i53_A Cyclin K; cell cycle, t 94.6 0.05 1.7E-06 45.3 5.8 93 88-182 152-250 (258)
29 2f2c_A Cyclin homolog, V-cycli 94.0 0.2 6.9E-06 41.7 8.2 84 88-180 153-245 (254)
30 2ivx_A Cyclin-T2; transcriptio 93.7 0.12 4.1E-06 43.0 6.3 90 88-181 147-238 (257)
31 1g3n_C V-cyclin; cyclin-depend 93.3 0.29 1E-05 40.7 8.1 56 88-143 152-211 (257)
32 2w96_A G1/S-specific cyclin-D1 91.9 0.46 1.6E-05 39.9 7.4 90 88-186 158-260 (271)
33 2pk2_A Cyclin-T1, protein TAT; 91.6 0.17 5.8E-06 44.7 4.6 90 88-181 154-245 (358)
34 3m03_A ORC6, origin recognitio 91.3 0.45 1.6E-05 34.4 5.8 62 91-153 6-72 (95)
35 3g33_B CCND3 protein; Ser/Thr 91.2 0.59 2E-05 40.2 7.5 92 89-185 173-269 (306)
36 3h4c_A Transcription factor TF 89.7 0.62 2.1E-05 38.5 5.9 66 87-152 15-83 (260)
37 1jkw_A Cyclin H; cell cycle, c 87.8 0.46 1.6E-05 41.2 4.2 55 89-143 169-226 (323)
38 2qdj_A Retinoblastoma-associat 86.1 1.6 5.5E-05 37.8 6.7 64 91-154 6-73 (304)
39 1w98_B Cyclin E, G1/S-specific 83.3 5.3 0.00018 33.6 8.6 52 88-139 152-214 (283)
40 4ell_A Retinoblastoma-associat 77.9 3.7 0.00013 37.0 6.0 72 86-157 281-355 (411)
41 2r7g_A PP110, retinoblastoma-a 77.6 2.9 0.0001 36.8 5.2 70 88-157 219-291 (347)
42 4elj_A Retinoblastoma-associat 74.7 5 0.00017 38.2 6.3 63 91-154 8-75 (656)
43 4elj_A Retinoblastoma-associat 68.1 8.8 0.0003 36.6 6.3 71 87-157 527-600 (656)
44 1f5q_B Gamma herpesvirus cycli 55.8 63 0.0022 26.5 8.8 87 88-181 150-240 (252)
45 2ad6_B Methanol dehydrogenase 24.7 41 0.0014 22.3 2.0 23 32-55 2-25 (69)
46 3iax_B Colicin-A; TOLB, TOLB B 24.6 61 0.0021 23.2 3.1 36 11-46 19-61 (115)
47 1w6s_B Methanol dehydrogenase 23.8 43 0.0015 22.5 2.1 23 32-55 2-25 (74)
No 1
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=248.01 Aligned_cols=154 Identities=36% Similarity=0.669 Sum_probs=133.5
Q ss_pred cccccccccc---ccch-HHhHhHHhhccc-ccCH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCC
Q 028181 52 RTTNSFWTKK---TWMW-RNLLTEKRASLL-KITS----SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMT 122 (212)
Q Consensus 52 ~~a~~fw~s~---~W~f-~e~l~~~r~~~~-~~~~----e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~ 122 (212)
.||+|||+|+ +|+| +++|...|.++. ..++ .+|..+++||.++|..|+|++.|++||++||||||+++++.
T Consensus 2 ~m~~~~w~Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~ 81 (285)
T 3rgf_B 2 AMAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLK 81 (285)
T ss_dssp TTTTCGGGSHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred CccchhhcccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCch
Confidence 3999999995 7999 788877766443 3333 24778899999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHhhccCCCCcc-HHHHHHHHHHhc-------ccccccccHHHHHHHHHHHHHHcCCcceecChHHHH
Q 028181 123 EYDPHLVAPTCLYLASKAEESTVQ-ARLLVFYIKKIY-------SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSL 194 (212)
Q Consensus 123 ~~~~~lvaaAcLfLA~KvEE~~~~-i~~ii~~~~~~~-------~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L 194 (212)
+++++++++||||||||+||++++ +++|+.++..+. .++.+.++.++|+++|+.||++|||++.++|||+||
T Consensus 82 ~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL 161 (285)
T 3rgf_B 82 SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPL 161 (285)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHH
T ss_pred hcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHH
Confidence 999999999999999999999984 899998775431 133345678999999999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 028181 195 VQFLQDAGMND 205 (212)
Q Consensus 195 ~~~l~~l~l~~ 205 (212)
.+|++.++.+.
T Consensus 162 ~~~~~~l~~~~ 172 (285)
T 3rgf_B 162 LQYVQDMGQED 172 (285)
T ss_dssp HHHHHHHTCHH
T ss_pred HHHHHHhCCCH
Confidence 99999999754
No 2
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6e-31 Score=222.69 Aligned_cols=144 Identities=26% Similarity=0.496 Sum_probs=128.1
Q ss_pred cccc---cccch-HHhHhHHhhcccccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCC-CCchhhhH
Q 028181 57 FWTK---KTWMW-RNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE-YDPHLVAP 131 (212)
Q Consensus 57 fw~s---~~W~f-~e~l~~~r~~~~~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~-~~~~lvaa 131 (212)
||+| ++|+| +++|...+.. .+.+ |..+++||.++|..|+||+.|++||++||||||.++++.+ ++++++++
T Consensus 1 ~~~Ss~~~~w~ft~~~l~~~~~~---~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ 76 (235)
T 1zp2_A 1 YWASSQLTQLFLSTDLESLEPTC---LSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVA 76 (235)
T ss_dssp -CCCGGGTGGGSCSSCTTSSCCC---SCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHH
T ss_pred CCccCCCCCCccCHHHHHHCCcc---hhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 8999 48999 6777654433 2333 9999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCC
Q 028181 132 TCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205 (212)
Q Consensus 132 AcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~ 205 (212)
||||||||+||+++++++|+.++.+++++ .+.++.++|+++|+.||++|||++.++||++||.+|++.++++.
T Consensus 77 acL~lA~K~Ee~~~~l~d~~~~~~~~~~~-~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~ 149 (235)
T 1zp2_A 77 TCIYLSCKVEECPVHIRTICNEANDLWSL-KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ 149 (235)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTTCCC-SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH
T ss_pred HHHHHHhccccCcccHHHHHHHHHHHccc-hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH
Confidence 99999999999999999999998876643 34567899999999999999999999999999999999998764
No 3
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.96 E-value=2.6e-29 Score=214.92 Aligned_cols=147 Identities=22% Similarity=0.416 Sum_probs=125.8
Q ss_pred ccccch-HHhHhH--HhhcccccCH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHH
Q 028181 60 KKTWMW-RNLLTE--KRASLLKITS--SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCL 134 (212)
Q Consensus 60 s~~W~f-~e~l~~--~r~~~~~~~~--e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcL 134 (212)
+++|+| +++|.. .|.++.+.+. .+|..+++||.++|..|+|++.|++||++||||||.++++.+.+++++++|||
T Consensus 2 ~~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 81 (257)
T 2ivx_A 2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81 (257)
T ss_dssp CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence 479999 777754 3445444333 46889999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCccHHHHHHHHHHhcc---------cccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCC
Q 028181 135 YLASKAEESTVQARLLVFYIKKIYS---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205 (212)
Q Consensus 135 fLA~KvEE~~~~i~~ii~~~~~~~~---------d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~ 205 (212)
|||||+||.++++++++.+++.+.. ++.+....++|+++|+.||++|||++.++||++||.+|++.++.+.
T Consensus 82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~ 161 (257)
T 2ivx_A 82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK 161 (257)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH
T ss_pred HHHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc
Confidence 9999999999999999998876542 1122223689999999999999999999999999999999998764
Q ss_pred c
Q 028181 206 I 206 (212)
Q Consensus 206 ~ 206 (212)
.
T Consensus 162 ~ 162 (257)
T 2ivx_A 162 D 162 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=2.6e-28 Score=208.47 Aligned_cols=147 Identities=20% Similarity=0.413 Sum_probs=125.4
Q ss_pred cccccch-HHhHhHHh--hccccc--CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHH
Q 028181 59 TKKTWMW-RNLLTEKR--ASLLKI--TSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTC 133 (212)
Q Consensus 59 ~s~~W~f-~e~l~~~r--~~~~~~--~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAc 133 (212)
..++|+| +++|...+ .+..+. +..+|..+++||.++|..|+|++.|+++|++|||||+.++++.+.+++++|+||
T Consensus 11 ~~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 90 (258)
T 2i53_A 11 TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACC 90 (258)
T ss_dssp CSSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred hccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHH
Confidence 3479999 77775433 333322 235688999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCccHHHHHHHHHHhccccccc----ccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCC
Q 028181 134 LYLASKAEESTVQARLLVFYIKKIYSDEKYR----YEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205 (212)
Q Consensus 134 LfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~----~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~ 205 (212)
||||||+||.++++++++.+++.+.+|..+. ..+++|+++|+.||++|||++.++||++||.+|++.++.+.
T Consensus 91 L~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~ 166 (258)
T 2i53_A 91 LFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK 166 (258)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCH
T ss_pred HHHHHccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCc
Confidence 9999999999999999999887655443221 13689999999999999999999999999999999998875
No 5
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.95 E-value=5.1e-28 Score=214.24 Aligned_cols=142 Identities=27% Similarity=0.485 Sum_probs=114.3
Q ss_pred ccccc---ccch-H-HhHhHHhh-------------------cccccCH----HHHHHHHHHHHHHHHHcC--CCHHHHH
Q 028181 57 FWTKK---TWMW-R-NLLTEKRA-------------------SLLKITS----SLRCRCPTIYRNLAQHVK--VRQRVVA 106 (212)
Q Consensus 57 fw~s~---~W~f-~-e~l~~~r~-------------------~~~~~~~----e~r~~~~~~I~~l~~~L~--L~~~t~a 106 (212)
||+|+ +|+| + ++|...|. ....++. .+|..+++||.++|..|+ ||+.|++
T Consensus 2 y~~Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~ 81 (323)
T 1jkw_A 2 YHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVG 81 (323)
T ss_dssp ---------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHH
T ss_pred CCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 89995 7999 4 67876553 1112232 247888999999999999 9999999
Q ss_pred HHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhccccc-ccccHHHHHHHHHHHHHHcCCcc
Q 028181 107 TAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEK-YRYEVKDILEMEMKILEALNYYL 185 (212)
Q Consensus 107 TA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~-~~~~~~~I~~~E~~LL~~L~Fdl 185 (212)
||++||||||+++++.++++++|++||||||||+||.++++++|+..+. .++. ..+..++|+.+|+.||++|||++
T Consensus 82 tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~---~~p~~~~~~~~~Il~~E~~iL~~L~f~l 158 (323)
T 1jkw_A 82 TACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR---ESPLGQEKALEQILEYELLLIQQLNFHL 158 (323)
T ss_dssp HHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS---SCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc---cChhhhHHHHHHHHHHHHHHHHHCCCcE
Confidence 9999999999999999999999999999999999999999999986531 1110 12346899999999999999999
Q ss_pred eecChHHHHHHHHHHc
Q 028181 186 VVFHPYRSLVQFLQDA 201 (212)
Q Consensus 186 ~v~~P~~~L~~~l~~l 201 (212)
.++|||+||.+|+..+
T Consensus 159 ~v~~P~~~L~~~l~~l 174 (323)
T 1jkw_A 159 IVHNPYRPFEGFLIDL 174 (323)
T ss_dssp CCCCSHHHHHHHHHHH
T ss_pred EcCChHHHHHHHHHHH
Confidence 9999999999999876
No 6
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.95 E-value=1.3e-28 Score=221.01 Aligned_cols=145 Identities=28% Similarity=0.435 Sum_probs=124.0
Q ss_pred cccch-HHhHhHH--hhcccccC--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHH
Q 028181 61 KTWMW-RNLLTEK--RASLLKIT--SSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLY 135 (212)
Q Consensus 61 ~~W~f-~e~l~~~--r~~~~~~~--~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLf 135 (212)
++|+| +++|... +.+.++.+ ..+|..+++||.+++..|+|++.|++||++||||||+++++.++++++|++||||
T Consensus 10 ~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLf 89 (358)
T 2pk2_A 10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALF 89 (358)
T ss_dssp SSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred CCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 69999 6777553 33433332 3468899999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccHHHHHHHHHHhcc---------cccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCC
Q 028181 136 LASKAEESTVQARLLVFYIKKIYS---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205 (212)
Q Consensus 136 LA~KvEE~~~~i~~ii~~~~~~~~---------d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~ 205 (212)
||||+||.++++++|+.+++.+.+ ++.|....++|+.+|+.||++|+|+|.++|||+||.+|++.++.+.
T Consensus 90 LA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~ 168 (358)
T 2pk2_A 90 LAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK 168 (358)
T ss_dssp HHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH
T ss_pred HHHhhccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH
Confidence 999999999999999988766542 1222223679999999999999999999999999999999998764
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=5e-24 Score=176.64 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccc
Q 028181 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 84 r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~ 163 (212)
..++.++|.++|.+|+||+.|++||++|||||+..+++++.+++.+++||||+|||+||.|++++||+.+++
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-------- 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-------- 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 164 ~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
++..+|.++|+.||+.|||++.+.||+.||.+|++.+++++.
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~ 118 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ 118 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH
Confidence 457899999999999999999999999999999999999764
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.89 E-value=1.4e-23 Score=179.91 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=113.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~ 156 (212)
.++..+|...++||.+++..++|++.|+.+|+.|++||++++++.+.+.+++|+||||||||+||. ++++++++..+.
T Consensus 33 ~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~- 111 (260)
T 2cch_B 33 DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD- 111 (260)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHc-
Confidence 356789999999999999999999999999999999999999999999999999999999999998 889999987652
Q ss_pred hcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCccc
Q 028181 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINM 208 (212)
Q Consensus 157 ~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~~~ 208 (212)
..++.++|+++|+.||++|+|++.+++|++||..|++.++.++..+
T Consensus 112 ------~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~ 157 (260)
T 2cch_B 112 ------DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKV 157 (260)
T ss_dssp ------SSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHH
T ss_pred ------CCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHH
Confidence 1467899999999999999999999999999999999999876333
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.89 E-value=6.3e-23 Score=176.88 Aligned_cols=122 Identities=21% Similarity=0.394 Sum_probs=113.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~ 156 (212)
.++..+|...++||.+++..+++++.|+++|+.|++||++++++.+.+++++++||||||||+||. |+++++++..+.
T Consensus 51 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~- 129 (271)
T 2w96_A 51 EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTD- 129 (271)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc-
Confidence 456789999999999999999999999999999999999999999999999999999999999998 889999987642
Q ss_pred hcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 157 ~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.++||++||..|++.++.++.
T Consensus 130 ------~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~ 173 (271)
T 2w96_A 130 ------NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEE 173 (271)
T ss_dssp ------TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHH
T ss_pred ------CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCch
Confidence 24678999999999999999999999999999999999998754
No 10
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.89 E-value=9e-23 Score=174.67 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=112.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~ 156 (212)
.++..+|...++||.+++..+++++.|+.+|+.|++||+.++++.+.+.+++++||||||||+||. +.++++++..+.
T Consensus 45 ~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~- 123 (257)
T 1g3n_C 45 SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA- 123 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC-
Confidence 356789999999999999999999999999999999999999999999999999999999999997 788999987652
Q ss_pred hcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 157 ~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.+++|+.||..|++.++.+..
T Consensus 124 ------~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~ 167 (257)
T 1g3n_C 124 ------DSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQ 167 (257)
T ss_dssp ------TCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSST
T ss_pred ------CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh
Confidence 24678999999999999999999999999999999999998765
No 11
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.88 E-value=1.5e-22 Score=174.51 Aligned_cols=121 Identities=24% Similarity=0.267 Sum_probs=111.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~ 156 (212)
.++..+|...++||.+++..+++++.|+.+|+.||+||+..+++.+.+++++++||||||||+||. ++++++++..+.
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~- 110 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTD- 110 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhc-
Confidence 467889999999999999999999999999999999999999999999999999999999999998 678999997652
Q ss_pred hcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCC
Q 028181 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND 205 (212)
Q Consensus 157 ~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~ 205 (212)
..++.++|+++|+.||++|+|++.+++|++||.++++.++.+.
T Consensus 111 ------~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~ 153 (269)
T 2b9r_A 111 ------NTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV 153 (269)
T ss_dssp ------SSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH
T ss_pred ------CCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH
Confidence 2467899999999999999999999999999999999888764
No 12
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=177.23 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=111.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~ 156 (212)
.++..+|...++||.+++..++|++.|+++|++||+||+.++++...+++++|+||||||||+||. +.++++++..+.
T Consensus 65 ~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~- 143 (306)
T 3g33_B 65 EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD- 143 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc-
Confidence 356789999999999999999999999999999999999999999999999999999999999996 557999887652
Q ss_pred hcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 157 ~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.+++|+.||..|++.++.+..
T Consensus 144 ------~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~ 187 (306)
T 3g33_B 144 ------HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRD 187 (306)
T ss_dssp ------TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTT
T ss_pred ------cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChh
Confidence 24678999999999999999999999999999999999988754
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.87 E-value=2.6e-22 Score=171.47 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=110.5
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHHh
Q 028181 79 ITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKKI 157 (212)
Q Consensus 79 ~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~~ 157 (212)
++..+|...++||.+++..+++++.|+.+|+.|++||+.++++.+.+.+++++||||||||+||. +.++++++..+.
T Consensus 47 i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~-- 124 (254)
T 2f2c_A 47 VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC-- 124 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC--
Confidence 46789999999999999999999999999999999999999999999999999999999999995 778999876542
Q ss_pred cccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 158 YSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 158 ~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.+++|+.||..|++.++.++.
T Consensus 125 -----~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~ 168 (254)
T 2f2c_A 125 -----DCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPED 168 (254)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGG
T ss_pred -----CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh
Confidence 24678999999999999999999999999999999999998765
No 14
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.86 E-value=1.1e-21 Score=170.35 Aligned_cols=122 Identities=19% Similarity=0.258 Sum_probs=111.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHH
Q 028181 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTR-KSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIK 155 (212)
Q Consensus 78 ~~~~e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~-~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~ 155 (212)
.++..+|...++||.+++..+++++.|+.+|+.|++||+.. .++.+.+.+++++||||||||+||. +.++++++..+.
T Consensus 44 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 44 LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 35678999999999999999999999999999999999998 6899999999999999999999998 778999987542
Q ss_pred HhcccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 156 KIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 156 ~~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.+++|+.||..|++.+++++.
T Consensus 124 -------~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 124 -------GACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp -------TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred -------CCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 24678999999999999999999999999999999999988754
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.85 E-value=2.2e-21 Score=166.42 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC-CccHHHHHHHHHHhccc
Q 028181 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKKIYSD 160 (212)
Q Consensus 82 e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~-~~~i~~ii~~~~~~~~d 160 (212)
.+|...++||.+++..++|.+.|+.+|+.|++||++++++...+.+++|+||+|||||+||. |.++++++..+.
T Consensus 47 ~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~----- 121 (252)
T 1f5q_B 47 QYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG----- 121 (252)
T ss_dssp SHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC-----
Confidence 47999999999999999999999999999999999999999999999999999999999997 667999987652
Q ss_pred ccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcCCCCc
Q 028181 161 EKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 161 ~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~l~~~ 206 (212)
..++.++|+++|+.||++|+|++.+++|+.||..|++.++.++.
T Consensus 122 --~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 122 --GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp --TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred --CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 25678999999999999999999999999999999999988754
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.83 E-value=2.9e-20 Score=153.07 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccc
Q 028181 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 84 r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~ 163 (212)
..+++++|.++|..|+||+.|.++|..||+||+..+.+++.++..+++||||+|||.|+.|++++||+.++.
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~-------- 80 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-------- 80 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred cccHHHHHHHHHHHHHHcCCccee--cChHHHHHHHHHHcCCCCc
Q 028181 164 RYEVKDILEMEMKILEALNYYLVV--FHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 164 ~~~~~~I~~~E~~LL~~L~Fdl~v--~~P~~~L~~~l~~l~l~~~ 206 (212)
.+..+|..+|+.|++.|||++.+ .||+.||.+|++.||+++.
T Consensus 81 -v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~ 124 (200)
T 1ais_B 81 -VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK 124 (200)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH
T ss_pred -CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH
Confidence 45789999999999999999999 9999999999999999864
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.6e-18 Score=154.47 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccc
Q 028181 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 84 r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~ 163 (212)
-.++...|.++|..|+||+.++++|.+||++|+..+.+++.+...+++||||+|||.|+.|+++++|+.+++
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~-------- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-------- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cccHHHHHHHHHHHHHHcC------------CcceecChHHHHHHHHHHcCCCCccccc
Q 028181 164 RYEVKDILEMEMKILEALN------------YYLVVFHPYRSLVQFLQDAGMNDINMTH 210 (212)
Q Consensus 164 ~~~~~~I~~~E~~LL~~L~------------Fdl~v~~P~~~L~~~l~~l~l~~~~~~~ 210 (212)
.+.++|..+++.|++.|+ |++.+.||+.||.+|++.|++++. +.+
T Consensus 198 -v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~ 254 (345)
T 3k7a_M 198 -VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTT 254 (345)
T ss_dssp -CCSHHHHHHHHHHHHHHTCC--------------------------------------
T ss_pred -CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHH
Confidence 356899999999999999 999999999999999999999854 444
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.56 E-value=9.3e-15 Score=130.33 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhccccccc
Q 028181 85 CRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYR 164 (212)
Q Consensus 85 ~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~ 164 (212)
.++...|.++|..|+||..+..+|..+|++++..+.+++.+...+++||||+|||.++.|+++++|..+++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~--------- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC---------
Confidence 56889999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ccHHHHHHHHHHHHHHcCCc------------ceecChHHHHHHHHHHcCCCCc
Q 028181 165 YEVKDILEMEMKILEALNYY------------LVVFHPYRSLVQFLQDAGMNDI 206 (212)
Q Consensus 165 ~~~~~I~~~E~~LL~~L~Fd------------l~v~~P~~~L~~~l~~l~l~~~ 206 (212)
.+..+|..+.+.|++.|+.. +...+|..||.+|+..|+++..
T Consensus 198 v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~ 251 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ 251 (345)
T ss_dssp CCTTHHHHHHHHHHHCC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH
Confidence 24678999999999999974 6678999999999999999864
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.61 E-value=2.3e-07 Score=75.62 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccccccH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~~~ 167 (212)
..+|.+++..|+++..+..+|..++.+.....-..+++|..+|+||||+||+..+.+++.++|..++. .+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~---------vs~ 179 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVAR---------VTE 179 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT---------CCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC---------CCH
Confidence 47899999999999999999999999999888888999999999999999999999999999998873 346
Q ss_pred HHHHHHHHHHHHHcCCcce
Q 028181 168 KDILEMEMKILEALNYYLV 186 (212)
Q Consensus 168 ~~I~~~E~~LL~~L~Fdl~ 186 (212)
..|...-+.|.+.||.++.
T Consensus 180 ~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 180 VTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 7899999999999997653
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.26 E-value=4.6e-06 Score=68.24 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccccccH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~~~ 167 (212)
..+|.+.+..|+++..+..+|..++..-....-..++.|..+|+||||+||+..+.+++.++|..++. .+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~---------v~~ 173 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAG---------VAD 173 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHT---------CCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhC---------CCH
Confidence 58889999999999999999999999988877778999999999999999999999999999987762 345
Q ss_pred HHHHHHHHHHHHHcCC
Q 028181 168 KDILEMEMKILEALNY 183 (212)
Q Consensus 168 ~~I~~~E~~LL~~L~F 183 (212)
..|.+.-+.|++.++.
T Consensus 174 ~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 174 VTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHHHHHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788887777776654
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.57 E-value=0.00056 Score=59.35 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---CCCCCCchhhhHHHHHHhhccCC-CCccHHHHHHHHHHhccccc
Q 028181 87 CPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRK---SMTEYDPHLVAPTCLYLASKAEE-STVQARLLVFYIKKIYSDEK 162 (212)
Q Consensus 87 ~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~---s~~~~~~~lvaaAcLfLA~KvEE-~~~~i~~ii~~~~~~~~d~~ 162 (212)
..+||.++.+..+++..++-.|.+|++|+..++ .+...+.+-+.++||.+|+|.-+ ..-.-+....+.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-------- 148 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-------- 148 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--------
Confidence 358999999999999999999999999998743 34566788899999999999654 444555555543
Q ss_pred ccccHHHHHHHHHHHHHHcCCcceecChHHHHHHHHHH
Q 028181 163 YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200 (212)
Q Consensus 163 ~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~ 200 (212)
....++|-.+|+..|..|+|++.|. +..|..-+++.
T Consensus 149 -Gisl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 149 -GVRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp -TSCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred -CcCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 2357899999999999999999865 44454434433
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.94 E-value=0.00013 Score=64.72 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIK 155 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~ 155 (212)
..+|.+.|..|+|+..+..+|..+.++.....-..+.+|..+|+||||+||.+.+..++.++|..++.
T Consensus 236 ~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 36888999999999999999999988887766567889999999999999999998888888888763
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00018 Score=63.66 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYI 154 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~ 154 (212)
..+|.+.+..|+|+..+..+|..+.++.....-..++.|..||+||||+||++.+..++.++|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4778899999999999999999999988776666789999999999999999988888888887765
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.64 E-value=0.02 Score=47.29 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccccccH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~~~ 167 (212)
..+|...+..++++..+...|..+...-+....+..+.|..||+||+|+|++..+...+. +.. . + ..++.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~-~~~----~-~----~~~~~ 204 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK-LLD----L-I----KSTDA 204 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH-HHH----H-C----CHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC-Ccc----h-h----hcCCH
Confidence 467888888899999999999999999888777789999999999999999986543221 100 0 0 02345
Q ss_pred HHHHHHHHHHHHHcCC
Q 028181 168 KDILEMEMKILEALNY 183 (212)
Q Consensus 168 ~~I~~~E~~LL~~L~F 183 (212)
++|.++-..|++....
T Consensus 205 ~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 205 FKVILCVQRIISIYYF 220 (235)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788777777775443
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.41 E-value=0.028 Score=48.05 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccccccH
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~~~ 167 (212)
..+|...+..++++..+...|..++..-+....+-.+.|..||+||||+|++..+...+ ..-. .+.++.
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~--~W~~---------~~~~~~ 226 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDAR--QWFA---------ELSVDM 226 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCH--HHHH---------TSCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChh--hHHH---------HHCCCH
Confidence 46888888899999999999999999887776667899999999999999998765321 1111 123455
Q ss_pred HHHHHHHHHHHHHcCCcceecChHHHHHHHHHHcC
Q 028181 168 KDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAG 202 (212)
Q Consensus 168 ~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~l~~l~ 202 (212)
++|.++-..|++...-.-. .++.+-+..++.++.
T Consensus 227 ~~l~~~~~~il~ly~~~~~-~~~~~~~~~~~~k~~ 260 (285)
T 3rgf_B 227 EKILEIIRVILKLYEQWKN-FDERKEMATILSKMP 260 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccc-CchhhhHHHHHHhCC
Confidence 6777777777664432211 334555666666654
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=94.78 E-value=0.026 Score=47.71 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCC
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST 144 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~ 144 (212)
..|+...+..++++..+...|..+...-.....+..+.|..+|+||+|+|++.-+.+
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 478888999999999998888888888877777888999999999999999876654
No 27
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=94.72 E-value=0.057 Score=45.24 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCC-CCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccccc
Q 028181 88 PTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTRKS-MTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRY 165 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~-~t~aTA~vyf~RFy~~~s-~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~~~ 165 (212)
..|+...+..++++. .+...|..+...-..... +..+.|..+|+||+|+|++.-+.+.-.+.+...+ .+
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~---------g~ 210 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKT---------GY 210 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHH---------CC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHh---------Cc
Confidence 588899999999876 666777766666554444 6778999999999999998765544344444333 23
Q ss_pred cHHHHHHHHHHHHHHc
Q 028181 166 EVKDILEMEMKILEAL 181 (212)
Q Consensus 166 ~~~~I~~~E~~LL~~L 181 (212)
+.++|..+-..|++.+
T Consensus 211 ~~~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 211 TLESLKPCLMDLHQTY 226 (260)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5567777766666643
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.64 E-value=0.05 Score=45.28 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccc
Q 028181 88 PTIYRNLAQHVKVRQ----RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~----~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~ 163 (212)
..|+...+..++.+. .+...|..+...-+....+..+.|..+|+||+|+|++..+...+-.+.... ..-|- +.+
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~-~~~W~-~~~ 229 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM-YRRWW-EQF 229 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCC-SSCGG-GGT
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCC-cccHH-HHh
Confidence 478889999999987 578888888888887777788999999999999999976643321100000 00000 001
Q ss_pred --cccHHHHHHHHHHHHHHcC
Q 028181 164 --RYEVKDILEMEMKILEALN 182 (212)
Q Consensus 164 --~~~~~~I~~~E~~LL~~L~ 182 (212)
.++.++|.++-..|++...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 2456777777777776543
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=94.01 E-value=0.2 Score=41.69 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCC-CCcc----HHHHHHHHHHhc
Q 028181 88 PTIYRNLAQHVKVRQRV----VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE-STVQ----ARLLVFYIKKIY 158 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t----~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE-~~~~----i~~ii~~~~~~~ 158 (212)
..|+......++++..+ ...|..++..-.....+..+.|..+|+||+|+|.+... .+.+ .+.+...+
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t---- 228 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL---- 228 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH----
Confidence 36778888888888764 23455566655555566789999999999999999852 2333 33333332
Q ss_pred ccccccccHHHHHHHHHHHHHH
Q 028181 159 SDEKYRYEVKDILEMEMKILEA 180 (212)
Q Consensus 159 ~d~~~~~~~~~I~~~E~~LL~~ 180 (212)
.++.++|..+-..|.+.
T Consensus 229 -----g~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 229 -----NFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp -----TCCHHHHHHHHHHHHHH
T ss_pred -----CcCHHHHHHHHHHHHHH
Confidence 24556777766666553
No 30
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.75 E-value=0.12 Score=43.03 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccc-cccc
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYT-RKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDE-KYRY 165 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~-~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~-~~~~ 165 (212)
..++......++.+..+..+|..+...-+. ..-+-.+.|..+|+||+|+|++..+...+... . ..-|.+. ...+
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~--~--~~~W~~~~~~~~ 222 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVST--D--GKHWWEYVDPTV 222 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCT--T--CCCGGGGTCSSC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCC--C--CchHHHHhCCCC
Confidence 467888889999999998888888776553 44457799999999999999998654322100 0 0001000 0023
Q ss_pred cHHHHHHHHHHHHHHc
Q 028181 166 EVKDILEMEMKILEAL 181 (212)
Q Consensus 166 ~~~~I~~~E~~LL~~L 181 (212)
+.++|.++-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5567777777777654
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=93.33 E-value=0.29 Score=40.74 Aligned_cols=56 Identities=7% Similarity=-0.020 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC
Q 028181 88 PTIYRNLAQHVKVRQRV----VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES 143 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t----~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~ 143 (212)
..|+......++++..+ ...|..++..-.....+..+.|..+|+||+|+|.+..+.
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 47888888888887654 344666666666666677899999999999999987763
No 32
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=91.87 E-value=0.46 Score=39.85 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCHHHH----HHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC--Cc------c-HHHHHHHH
Q 028181 88 PTIYRNLAQHVKVRQRVV----ATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES--TV------Q-ARLLVFYI 154 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~----aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~--~~------~-i~~ii~~~ 154 (212)
..|+..+...++++..+. ..|..++........+..+.|..+|+||+|+|++.-+. +. . .+.+...+
T Consensus 158 ~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~ 237 (271)
T 2w96_A 158 HDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237 (271)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHH
Confidence 588889999999987764 34555555444444456789999999999999975431 11 1 22333222
Q ss_pred HHhcccccccccHHHHHHHHHHHHHHcCCcce
Q 028181 155 KKIYSDEKYRYEVKDILEMEMKILEALNYYLV 186 (212)
Q Consensus 155 ~~~~~d~~~~~~~~~I~~~E~~LL~~L~Fdl~ 186 (212)
.++..+|..+-..|++.++-.+.
T Consensus 238 ---------~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 238 ---------KCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp ---------TSCHHHHHHHHHHHHHHHTTTTT
T ss_pred ---------CcCHHHHHHHHHHHHHHHHHHHH
Confidence 24567788888888887766554
No 33
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=91.64 E-value=0.17 Score=44.71 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccc-cccc
Q 028181 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYT-RKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDE-KYRY 165 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~-~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~-~~~~ 165 (212)
..||..+...++++..+..+|..++..-+. ..-+..+.|..||+||||+|++..+...+... . ..-|.+. ...+
T Consensus 154 ~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~---~-~~~W~~~~~~~v 229 (358)
T 2pk2_A 154 HTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVST---D-GKHWWEYVDATV 229 (358)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCS---S-SCCTTTTSCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCc---c-ccchHHHHhccC
Confidence 367778888899999998888888877653 33356789999999999999998664322110 0 0001000 0023
Q ss_pred cHHHHHHHHHHHHHHc
Q 028181 166 EVKDILEMEMKILEAL 181 (212)
Q Consensus 166 ~~~~I~~~E~~LL~~L 181 (212)
+.++|.++-..|+..+
T Consensus 230 t~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 230 TLELLDELTHEFLQIL 245 (358)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4567777777777655
No 34
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=91.34 E-value=0.45 Score=34.38 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCC-----CCCCCchhhhHHHHHHhhccCCCCccHHHHHHH
Q 028181 91 YRNLAQHVKVRQRVVATAVTYMRRCYTRKS-----MTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153 (212)
Q Consensus 91 I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s-----~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~ 153 (212)
|.++|..|++.+ +...|..++.+|=..-+ -.+.+.=..++||+|.|||.....+.=.-++..
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~ 72 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVAT 72 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHT
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 678999999987 78888899999964321 124455678899999999988876654445543
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=91.20 E-value=0.59 Score=40.16 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCHH----HHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCcc-HHHHHHHHHHhcccccc
Q 028181 89 TIYRNLAQHVKVRQR----VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQ-ARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 89 ~~I~~l~~~L~L~~~----t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~-i~~ii~~~~~~~~d~~~ 163 (212)
.|+..+...++++.. +...|..++.--.....+..+.|..+|+||+|+|.+.-+.... ..........+ .
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-----t 247 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-----T 247 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-----H
Confidence 677788888887644 3345666666666666777899999999999999987663221 12222221111 1
Q ss_pred cccHHHHHHHHHHHHHHcCCcc
Q 028181 164 RYEVKDILEMEMKILEALNYYL 185 (212)
Q Consensus 164 ~~~~~~I~~~E~~LL~~L~Fdl 185 (212)
.++.++|..+-..|++.+.=.+
T Consensus 248 g~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 248 GTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777665544
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=89.70 E-value=0.62 Score=38.45 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCC---CCCCchhhhHHHHHHhhccCCCCccHHHHHH
Q 028181 87 CPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSM---TEYDPHLVAPTCLYLASKAEESTVQARLLVF 152 (212)
Q Consensus 87 ~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~---~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~ 152 (212)
+.+-|..+.+.-++|..|+.-|+.+-+.|.-...- +--..+.||+||+.+|+--...|.++.++..
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~ 83 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC 83 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 45667889999999999999999999999753222 2346789999999999988888998877754
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=87.78 E-value=0.46 Score=41.17 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCC
Q 028181 89 TIYRNLAQH---VKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES 143 (212)
Q Consensus 89 ~~I~~l~~~---L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~ 143 (212)
.++..+... ++.+..+...|..++..-+....+-.+.|..||+||||+|++..+.
T Consensus 169 ~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~ 226 (323)
T 1jkw_A 169 GFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI 226 (323)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 344444433 3445667778888888877666666799999999999999987554
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=86.10 E-value=1.6 Score=37.79 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCC---CCCCCCchhhhHHHHHHhhc-cCCCCccHHHHHHHH
Q 028181 91 YRNLAQHVKVRQRVVATAVTYMRRCYTRK---SMTEYDPHLVAPTCLYLASK-AEESTVQARLLVFYI 154 (212)
Q Consensus 91 I~~l~~~L~L~~~t~aTA~vyf~RFy~~~---s~~~~~~~lvaaAcLfLA~K-vEE~~~~i~~ii~~~ 154 (212)
..++|+.|+++..|...|...|++.-..- +...-+....-.||||.||. ++++..++..|+..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 35789999999999999999999976641 11223445556677999996 566678888888875
No 39
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=83.29 E-value=5.3 Score=33.57 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCH-----------HHHHHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhc
Q 028181 88 PTIYRNLAQHVKVRQ-----------RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASK 139 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~-----------~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~K 139 (212)
..|+......++++. .+...|..++..-.....+..+.|..+|+||+|+|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 356666666655432 2233344444444444556678999999999999974
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=77.86 E-value=3.7 Score=37.03 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhc--CCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHh
Q 028181 86 RCPTIYRNLAQHVKVRQ-RVVATAVTYMRRCYT--RKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKI 157 (212)
Q Consensus 86 ~~~~~I~~l~~~L~L~~-~t~aTA~vyf~RFy~--~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~ 157 (212)
.+..=|+.+|.+|+++. .....--+.|+..+. ..-+.+.|.--+.+.|+|.-||+.....+.++|+...++.
T Consensus 281 LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~q 355 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDL 355 (411)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhC
Confidence 34566789999998775 232222234444332 2334566777799999999999999889999999986543
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=77.64 E-value=2.9 Score=36.82 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhc--CCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHh
Q 028181 88 PTIYRNLAQHVKVRQ-RVVATAVTYMRRCYT--RKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKI 157 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~-~t~aTA~vyf~RFy~--~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~ 157 (212)
..=|.++|.+|+++. .+....-+.|...+. ..-+.+.|.--+.+.|+|.-||+.....+-++|+...++.
T Consensus 219 ~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~q 291 (347)
T 2r7g_A 219 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDL 291 (347)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Confidence 344899999998775 344445555555543 2334567777899999999999999888999999986543
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=74.73 E-value=5 Score=38.24 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcC-----CCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHH
Q 028181 91 YRNLAQHVKVRQRVVATAVTYMRRCYTR-----KSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYI 154 (212)
Q Consensus 91 I~~l~~~L~L~~~t~aTA~vyf~RFy~~-----~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~ 154 (212)
..++|+.|+++..|.+.|...|..-... .++.+ +.....+.++|.||.+|++..++..|+..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHh
Confidence 4678999999999999999999998842 22233 333334445777778899999999998876
No 43
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=68.13 E-value=8.8 Score=36.60 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhcC--CCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHh
Q 028181 87 CPTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTR--KSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKI 157 (212)
Q Consensus 87 ~~~~I~~l~~~L~L~~-~t~aTA~vyf~RFy~~--~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~ 157 (212)
+..=|..+|.+|++++ ......-+.|+..+.. .-+.+.|.--+.+.|+|.-||+.....+-++|+...+++
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~q 600 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDL 600 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHhC
Confidence 4567899999998774 3444455555555432 334567777899999999999999888999999986654
No 44
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=55.77 E-value=63 Score=26.50 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCHHHH----HHHHHHHHHHhcCCCCCCCCchhhhHHHHHHhhccCCCCccHHHHHHHHHHhcccccc
Q 028181 88 PTIYRNLAQHVKVRQRVV----ATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (212)
Q Consensus 88 ~~~I~~l~~~L~L~~~t~----aTA~vyf~RFy~~~s~~~~~~~lvaaAcLfLA~KvEE~~~~i~~ii~~~~~~~~d~~~ 163 (212)
..|+......++.+.... ..|..+..-......+..+.|-.+|+||+.++.. +......++....... .
T Consensus 150 ~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~--~~~~~~~~~~~~L~~~-----t 222 (252)
T 1f5q_B 150 TDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMN--QKYDYYENRIDGVCKS-----L 222 (252)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhc--cCCCchhhHHHHHHHH-----H
Confidence 477777778888876532 3444444444444455678999999999777753 2222222222222111 1
Q ss_pred cccHHHHHHHHHHHHHHc
Q 028181 164 RYEVKDILEMEMKILEAL 181 (212)
Q Consensus 164 ~~~~~~I~~~E~~LL~~L 181 (212)
.++.++|..|-..|.+.+
T Consensus 223 ~~~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 223 YITKEELHQCCDLVDIAI 240 (252)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 345678888777776654
No 45
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=24.68 E-value=41 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=16.9
Q ss_pred CcccCCCCCCcccCCCCCccc-ccc
Q 028181 32 DYSNSGKGGVKKWLPISGHRR-TTN 55 (212)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~a~ 55 (212)
|-++|-.||+ +|.|.|||.. +|+
T Consensus 2 DGt~CkapG~-CWEpkPGyP~kiaG 25 (69)
T 2ad6_B 2 DGQNCKEPGN-CWENKPGYPEKIAG 25 (69)
T ss_dssp CSCCCSBTTB-CCCCCTTSCSCCTT
T ss_pred CCcccCCCCC-ccCCCCCCchhccc
Confidence 4456667887 6889999986 664
No 46
>3iax_B Colicin-A; TOLB, TOLB BOX, complex, protein transport, trans antibiotic, antimicrobial, bacteriocin, cell membrane, MEMB transmembrane; 2.60A {Citrobacter freundii}
Probab=24.57 E-value=61 Score=23.23 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=23.9
Q ss_pred cCCCCCCCcccccccccccccCcccCC-------CCCCcccCC
Q 028181 11 YGPQPGPLAEGKSVKRSRTQKDYSNSG-------KGGVKKWLP 46 (212)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 46 (212)
-|++|.|-.+.++.--...++|.++.+ +||..++.|
T Consensus 19 rg~gp~pggg~hGnsGg~~rg~n~n~gn~s~tVMKpGdSynTP 61 (115)
T 3iax_B 19 RGSGPEPGGGSHGNSGGHDRGDSSNVGNESVTVMKPGDSYNTP 61 (115)
T ss_pred CCCCCCCCCCCcCCCCCCCcCccCCcCCceeEEecCCCcccCC
Confidence 466677766666666666667777766 577775544
No 47
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=23.77 E-value=43 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=16.9
Q ss_pred CcccCCCCCCcccCCCCCccc-ccc
Q 028181 32 DYSNSGKGGVKKWLPISGHRR-TTN 55 (212)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~a~ 55 (212)
|-++|-.||+ +|.|.|||.. +|+
T Consensus 2 DGt~CkapG~-CWEpkPGyP~kiaG 25 (74)
T 1w6s_B 2 DGTKCKAAGN-CWEPKPGFPEKIAG 25 (74)
T ss_dssp CSCCCSBTTB-CCCCCTTCCSCCTT
T ss_pred CCCcCCCCCC-ccCCCCCCchhccC
Confidence 4456667887 6889999986 664
Done!