BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028183
         (212 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K10|A Chain A, Crystal Structure Of Telomere Capping Protein Stn1 From
           Saccharomyces Cerevisiae
          Length = 179

 Score = 30.0 bits (66), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 121 FGDAVEEIYGS-LKQMRQIRSAGTSRASFRFQMSNV 155
            G  ++EI  S L +++++RS  TS ASF FQ  NV
Sbjct: 12  LGLQMKEISNSDLYKLKEVRSVVTSLASFLFQQQNV 47


>pdb|3KEY|A Chain A, Crystal Structure Of S. Cerevisiae Stn1 C-Terminal
          Length = 185

 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 121 FGDAVEEIYGS-LKQMRQIRSAGTSRASFRFQMSNV 155
            G  ++EI  S L +++++RS  TS ASF FQ  NV
Sbjct: 15  LGLQMKEISNSDLYKLKEVRSVVTSLASFLFQQQNV 50


>pdb|2NZW|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZW|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZW|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZX|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp
 pdb|2NZX|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp
 pdb|2NZX|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp
 pdb|2NZY|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp- Fucose
 pdb|2NZY|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp- Fucose
 pdb|2NZY|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase With
          Gdp- Fucose
          Length = 371

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 41 GTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANY 94
          G + I+   NS LY    +    RY  T+ Q+P + + +  G  L  A+++ +Y
Sbjct: 35 GDEEIKEFKNSVLY----FILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSY 84


>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
           Acid Hydrolase From Pseudomonas Putida, Northeast
           Structural Genomics Target Ppr23.
 pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
           Acid Hydrolase From Pseudomonas Putida, Northeast
           Structural Genomics Target Ppr23
          Length = 288

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 115 HDCFSNFGDAVE--EIYGSLKQMRQIRSAGTSRASFRFQM 152
           H+   +FG AVE  E  G   Q+RQ     T+RA F F++
Sbjct: 242 HESEVSFGSAVEQFEALGCSAQLRQALLLDTARALFGFEL 281


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.126    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,116,184
Number of Sequences: 62578
Number of extensions: 170270
Number of successful extensions: 854
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 8
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)