Query 028183
Match_columns 212
No_of_seqs 120 out of 841
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02314 pectinesterase 100.0 5.4E-33 1.2E-37 258.3 21.0 164 40-209 68-236 (586)
2 PLN02468 putative pectinestera 100.0 1.8E-32 3.9E-37 253.7 20.2 156 41-208 63-218 (565)
3 PLN02484 probable pectinestera 100.0 1.7E-32 3.6E-37 254.7 19.6 157 41-208 72-228 (587)
4 PLN02313 Pectinesterase/pectin 100.0 4.3E-32 9.4E-37 252.1 20.3 200 2-208 15-221 (587)
5 PLN02217 probable pectinestera 100.0 3.5E-32 7.6E-37 254.1 18.2 159 40-208 51-209 (670)
6 smart00856 PMEI Plant invertas 100.0 1.5E-31 3.2E-36 208.5 16.5 147 40-202 2-148 (148)
7 TIGR01614 PME_inhib pectineste 100.0 3.5E-31 7.6E-36 212.9 18.5 152 39-206 26-177 (178)
8 PLN02708 Probable pectinestera 100.0 1.6E-31 3.4E-36 246.9 18.8 157 37-208 39-197 (553)
9 PLN02990 Probable pectinestera 100.0 4.2E-31 9.1E-36 244.7 20.0 159 41-208 52-211 (572)
10 PLN02506 putative pectinestera 100.0 1.4E-30 3.1E-35 239.5 18.9 186 13-208 7-193 (537)
11 PLN02745 Putative pectinestera 100.0 5.1E-30 1.1E-34 238.2 20.8 163 32-208 68-233 (596)
12 PLN02197 pectinesterase 100.0 3.7E-30 8E-35 238.4 18.2 155 40-208 36-192 (588)
13 PLN02301 pectinesterase/pectin 100.0 3.6E-30 7.8E-35 237.1 17.7 157 38-210 46-204 (548)
14 PLN02995 Probable pectinestera 100.0 4.9E-30 1.1E-34 236.2 18.1 157 43-210 35-194 (539)
15 PLN02416 probable pectinestera 100.0 4.4E-30 9.5E-35 236.6 17.5 186 6-208 7-193 (541)
16 PLN02713 Probable pectinestera 100.0 1.1E-29 2.3E-34 235.2 18.2 152 45-205 35-188 (566)
17 PF04043 PMEI: Plant invertase 100.0 7.1E-29 1.5E-33 193.6 15.6 148 40-202 2-152 (152)
18 PLN02698 Probable pectinestera 100.0 1.3E-28 2.9E-33 225.1 17.1 155 39-208 19-178 (497)
19 PLN03043 Probable pectinestera 100.0 7.1E-28 1.5E-32 222.1 16.0 151 47-205 4-156 (538)
20 PLN02933 Probable pectinestera 99.9 7.9E-24 1.7E-28 194.0 18.1 129 70-208 48-183 (530)
21 PLN02170 probable pectinestera 99.9 6.8E-23 1.5E-27 187.4 14.0 174 5-210 13-188 (529)
22 PLN02201 probable pectinestera 99.9 4.2E-22 9.1E-27 182.7 15.9 128 73-207 37-164 (520)
23 PLN02488 probable pectinestera 99.9 4.9E-22 1.1E-26 180.5 13.3 151 46-207 2-160 (509)
24 PLN02916 pectinesterase family 99.7 4.3E-16 9.2E-21 142.3 11.1 82 110-208 61-142 (502)
25 PF07172 GRP: Glycine rich pro 85.5 0.74 1.6E-05 33.4 2.4 25 1-25 1-25 (95)
26 PF07870 DUF1657: Protein of u 67.3 29 0.00062 21.9 6.7 43 84-129 5-47 (50)
27 KOG1733 Mitochondrial import i 66.4 46 0.00099 23.9 7.4 61 73-133 18-85 (97)
28 KOG4514 Uncharacterized conser 61.7 87 0.0019 25.5 8.7 60 69-134 120-179 (222)
29 PF05887 Trypan_PARP: Procycli 40.8 9.1 0.0002 29.5 0.0 23 1-23 1-23 (143)
30 PF11172 DUF2959: Protein of u 39.1 2E+02 0.0044 23.7 7.5 85 47-135 5-90 (201)
31 PF05984 Cytomega_UL20A: Cytom 36.4 33 0.00072 24.3 2.2 19 5-23 3-21 (100)
32 PRK09125 DNA ligase; Provision 35.6 38 0.00082 29.2 3.0 35 6-40 1-36 (282)
33 KOG4841 Dolichol-phosphate man 35.1 36 0.00078 24.2 2.3 27 112-138 65-91 (95)
34 PF02953 zf-Tim10_DDP: Tim10/D 32.0 1.2E+02 0.0027 19.7 4.5 29 105-133 36-64 (66)
35 PF11895 DUF3415: Domain of un 31.3 19 0.0004 25.3 0.3 21 37-57 44-64 (80)
36 KOG3457 Sec61 protein transloc 30.3 36 0.00078 24.1 1.6 23 3-25 59-81 (88)
37 PF03487 IL13: Interleukin-13; 29.0 3.8 8.3E-05 24.7 -2.9 37 13-51 3-39 (43)
38 PF15284 PAGK: Phage-encoded v 23.8 98 0.0021 20.5 2.7 26 10-35 11-36 (61)
39 PF02609 Exonuc_VII_S: Exonucl 22.6 1.8E+02 0.0039 18.2 3.8 45 121-175 1-45 (53)
40 PF08285 DPM3: Dolichol-phosph 21.8 74 0.0016 22.8 2.0 27 112-138 61-87 (91)
41 PRK11376 hlyE hemolysin E; Pro 20.7 5.2E+02 0.011 21.9 7.5 72 80-173 12-83 (303)
No 1
>PLN02314 pectinesterase
Probab=100.00 E-value=5.4e-33 Score=258.30 Aligned_cols=164 Identities=25% Similarity=0.495 Sum_probs=141.9
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
.+...|+.+|+.|+||++|+++|+++|.+...+|++|++++++++++++.++..++++++.. ..+++.+.||+||.|
T Consensus 68 ~~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~---~~~~~~k~AL~DC~E 144 (586)
T PLN02314 68 TPATSLKAVCSVTRYPESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINE---TNDERLKSALRVCET 144 (586)
T ss_pred CHHHHHHHhccCCCChHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHH
Confidence 35679999999999999999999999987788999999999999999999999999988754 578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccC-----CchhhHHHHHHHHHHHH
Q 028183 120 NFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVA-----DGQMKEEVCDRVEYVKK 194 (212)
Q Consensus 120 ly~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~-----~~~~~~~l~~~~~~~~~ 194 (212)
+|++++|+|++++.+|...... ...+.+.++|++|||||||||++||+|||++.. +++++..|...+.++.+
T Consensus 145 llddAid~L~~Sl~~l~~~~~~---~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~e 221 (586)
T PLN02314 145 LFDDAIDRLNDSISSMQVGEGE---KILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTE 221 (586)
T ss_pred HHHHHHHHHHHHHHHHhhcccc---cccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999998743110 001245789999999999999999999998631 35688889999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028183 195 LTSNALALVNRYAEN 209 (212)
Q Consensus 195 L~snaLaiv~~l~~~ 209 (212)
|+||+|||++++...
T Consensus 222 LtSNaLAIi~~l~~~ 236 (586)
T PLN02314 222 FTSNSLAIVSKILGI 236 (586)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999999987653
No 2
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=1.8e-32 Score=253.70 Aligned_cols=156 Identities=26% Similarity=0.407 Sum_probs=136.9
Q ss_pred hhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 028183 41 GTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSN 120 (212)
Q Consensus 41 ~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~el 120 (212)
....|+..|+.|+||++|+++|.++|.+...+|++|++++++++++++..+...+.++..... ..+++.+.|++||.|+
T Consensus 63 ~~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~-~~d~~~k~AL~DC~EL 141 (565)
T PLN02468 63 ISTSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLG-VKDNMTNAALNACQEL 141 (565)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCChHHHHHHHHHHHH
Confidence 456999999999999999999999987777899999999999999999999988887754321 3588899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHH
Q 028183 121 FGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNAL 200 (212)
Q Consensus 121 y~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaL 200 (212)
|++++|+|++++.++.... ..+.++|++||||||||||+||+|||++ +.+++.|...+.++.+|+||+|
T Consensus 142 lddaid~L~~Sl~~l~~~~--------~~~~~dDl~TWLSAAlTnq~TClDGF~e---~~vk~~~~~~l~n~~eLtSNaL 210 (565)
T PLN02468 142 LDLAIDNLNNSLTSSGGVS--------VLDNVDDLRTWLSSAGTYQETCIDGLAE---PNLKSFGENHLKNSTELTSNSL 210 (565)
T ss_pred HHHHHHHHHHHHHHHhccc--------cccchHHHHHHHHHHhcchhhhhhhhcc---cCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887321 1346899999999999999999999987 3578889999999999999999
Q ss_pred HHHHHHHh
Q 028183 201 ALVNRYAE 208 (212)
Q Consensus 201 aiv~~l~~ 208 (212)
||++.+..
T Consensus 211 AIi~~l~~ 218 (565)
T PLN02468 211 AIITWIGK 218 (565)
T ss_pred HHhhcccc
Confidence 99998654
No 3
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=1.7e-32 Score=254.67 Aligned_cols=157 Identities=25% Similarity=0.480 Sum_probs=137.6
Q ss_pred hhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 028183 41 GTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSN 120 (212)
Q Consensus 41 ~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~el 120 (212)
+...|+.+|+.|+||++|+++|.++|.+...+|++|++++++++++++..+......+.. . ..+++.+.||+||+|+
T Consensus 72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~-~--~~~~r~k~AL~DClEL 148 (587)
T PLN02484 72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISY-V--QMPPRVRSAYDSCLEL 148 (587)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHH
Confidence 456999999999999999999999988777899999999999999999988766554443 3 6788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHH
Q 028183 121 FGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNAL 200 (212)
Q Consensus 121 y~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaL 200 (212)
|++++|+|++++.+|.... . .+.++|++|||||||||++||+|||++..++.++++|...+.++.+|+||+|
T Consensus 149 lddAid~L~~Sl~~l~~~~-------~-~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~vk~~m~~~l~~l~~LtSNAL 220 (587)
T PLN02484 149 LDDSVDALSRALSSVVPSS-------G-GGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKDQMTGALKDLSELVSNCL 220 (587)
T ss_pred HHHHHHHHHHHHHHHhccc-------c-ccchHHHHhHHHHHhccHhhHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988431 1 3467999999999999999999999874345688999999999999999999
Q ss_pred HHHHHHHh
Q 028183 201 ALVNRYAE 208 (212)
Q Consensus 201 aiv~~l~~ 208 (212)
||++.+..
T Consensus 221 AIi~~~~~ 228 (587)
T PLN02484 221 AIFSASNG 228 (587)
T ss_pred HHhhcccc
Confidence 99998764
No 4
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=4.3e-32 Score=252.10 Aligned_cols=200 Identities=25% Similarity=0.414 Sum_probs=154.2
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcccCCC------CCCCCCCCCCchhhHHhccccCCCchhchhhhhccccCCCCCCHHH
Q 028183 2 KSPRPLILLSFLFSTFFLQLHAIPAAAP------ASYPPDTGSGTGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQ 75 (212)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~ 75 (212)
|...+++|++++.+.+++..++ +.+.. .+..|.. .......|+..|+.|+||++|+++|++.+.+...+|++
T Consensus 15 ~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~ 92 (587)
T PLN02313 15 KNNKKLILSSAAIALLLVAAVV-GIAAGTTNQNKNRKITTL-SSTSHAVLKSVCSSTLYPELCFSAVAATGGKELTSQKE 92 (587)
T ss_pred hccceeeHHHHHHHHHHHHHHH-hhheeeecccCCCCCCcc-ccCHhHHHHHhccCCCChHHHHHHHhccCCcccCCHHH
Confidence 3445566666655555555322 22211 1111111 12245699999999999999999999988766778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhH
Q 028183 76 LASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNV 155 (212)
Q Consensus 76 l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv 155 (212)
|++++++++++++..+...+++++.... +.+++.+.|++||+|+|++++|+|.+++..+..... ...+.+.++|+
T Consensus 93 Li~~sL~vtl~~a~~a~~~vs~L~~~~~-~l~~r~k~AL~DClELlddavD~L~~Sl~~l~~~~~----~~~~~~~~dDl 167 (587)
T PLN02313 93 VIEASLNLTTKAVKHNYFAVKKLIAKRK-GLTPREVTALHDCLETIDETLDELHVAVEDLHQYPK----QKSLRKHADDL 167 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccccccchhHH
Confidence 9999999999999999999998875321 468889999999999999999999999999884311 01223468999
Q ss_pred HHHHHHhhcchhHHHhcccccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028183 156 QTWMSAALTDEETCTDGFEDVA-DGQMKEEVCDRVEYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 156 ~twLSAAlt~~~TC~Dgf~~~~-~~~~~~~l~~~~~~~~~L~snaLaiv~~l~~ 208 (212)
+||||||||||+||+|||++.. ++.+++.|...+.++.+|+||+|||++.+..
T Consensus 168 qTWLSAALTnq~TClDGF~~~~~~~~vk~~m~~~l~n~teLtSNALAIv~~~~~ 221 (587)
T PLN02313 168 KTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTE 221 (587)
T ss_pred HHHHHHHhcchhhHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999997522 3567888999999999999999999998764
No 5
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=3.5e-32 Score=254.11 Aligned_cols=159 Identities=26% Similarity=0.441 Sum_probs=137.8
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
++.+.|+..|+.|+||++|+++|..++ ....+|++|++++++++++++..+...++.+... ..+++++.|++||+|
T Consensus 51 ~~~~~Ikt~C~sT~YP~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~---~~~~r~k~AL~DClE 126 (670)
T PLN02217 51 TSVKAIKDVCAPTDYKETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIEL---QKDPRTKMALDQCKE 126 (670)
T ss_pred hHHHHHHHHhcCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHH
Confidence 455699999999999999999999987 4567999999999999999999999988888543 467889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHH
Q 028183 120 NFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNA 199 (212)
Q Consensus 120 ly~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sna 199 (212)
+|++++|+|.+++..|...+. ..+.+..+|++||||||||||+||.|||.+. ++.++..|...+.++.+|+||+
T Consensus 127 LlddAvDeL~~Sl~~L~~~~~-----~~~~~~~dDvqTWLSAALTnQdTClDGF~~~-~~~vk~~m~~~l~nvseLtSNA 200 (670)
T PLN02217 127 LMDYAIGELSKSFEELGKFEF-----HKVDEALIKLRIWLSATISHEQTCLDGFQGT-QGNAGETIKKALKTAVQLTHNG 200 (670)
T ss_pred HHHHHHHHHHHHHHHHhhccc-----cccccchhHHHHHHHHHHhchhHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874211 1223457999999999999999999999863 3568888999999999999999
Q ss_pred HHHHHHHHh
Q 028183 200 LALVNRYAE 208 (212)
Q Consensus 200 Laiv~~l~~ 208 (212)
|||++++..
T Consensus 201 LAmv~~lss 209 (670)
T PLN02217 201 LAMVSEMSN 209 (670)
T ss_pred HHHHhhccc
Confidence 999998765
No 6
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=99.98 E-value=1.5e-31 Score=208.48 Aligned_cols=147 Identities=40% Similarity=0.695 Sum_probs=135.6
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
...+.|+.+|++|+||++|+++|.++|.+...|+.+|++++++.+++++..+..+++++.+. ..++..+.++++|.+
T Consensus 2 ~~~~~i~~~C~~T~~~~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~~---~~~~~~~~al~~C~~ 78 (148)
T smart00856 2 PTSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLKK---TKDPRLKAALKDCLE 78 (148)
T ss_pred CHHHHHHHHhcCCCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 35789999999999999999999999988889999999999999999999999999998764 678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHH
Q 028183 120 NFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNA 199 (212)
Q Consensus 120 ly~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sna 199 (212)
+|++++++|++++.++... +++|+++|||+|+++++||+|||.+. ++.++++|..++.++.+|++|+
T Consensus 79 ~y~~a~~~L~~a~~~l~~~------------~~~d~~~~lsaa~t~~~tC~d~f~~~-~~~~~~~l~~~~~~~~~l~s~a 145 (148)
T smart00856 79 LYDDAVDSLEKALEELKSG------------DYDDVATWLSAALTDQDTCLDGFEEN-DDKVKSPLTKRNDNLEKLTSNA 145 (148)
T ss_pred HHHHHHHHHHHHHHHHHhc------------chhHHHHHHHHHhcCcchHHhHhccC-CcchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999842 68999999999999999999999974 3567889999999999999999
Q ss_pred HHH
Q 028183 200 LAL 202 (212)
Q Consensus 200 Lai 202 (212)
|+|
T Consensus 146 Lai 148 (148)
T smart00856 146 LAI 148 (148)
T ss_pred HhC
Confidence 986
No 7
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=99.98 E-value=3.5e-31 Score=212.88 Aligned_cols=152 Identities=34% Similarity=0.580 Sum_probs=138.8
Q ss_pred CchhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHH
Q 028183 39 GTGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCF 118 (212)
Q Consensus 39 ~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ 118 (212)
..+...|+.+|++|+||++|+.+|.++|++...|+++++.++++.+..++..+..++.++..+ ..++..+.++++|.
T Consensus 26 ~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~---~~~~~~~~al~~C~ 102 (178)
T TIGR01614 26 NATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLT---KGDPRDKSALEDCV 102 (178)
T ss_pred cchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 557789999999999999999999999988778999999999999999999999999998766 35788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHH
Q 028183 119 SNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSN 198 (212)
Q Consensus 119 ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sn 198 (212)
++|++++++|+++++++.. ++++|+++|||+|+++++||+|||.+.+ +..++++..+++++.+|++|
T Consensus 103 ~~y~~a~~~L~~a~~~l~~------------~~~~d~~~~ls~a~~~~~tC~d~f~~~~-~~~~~~l~~~~~~~~~l~s~ 169 (178)
T TIGR01614 103 ELYSDAVDALDKALASLKS------------KDYSDAETWLSSALTDPSTCEDGFEELG-GIVKSPLTKRNNNVKKLSSI 169 (178)
T ss_pred HHHHHHHHHHHHHHHHHHh------------cchhHHHHHHHHHHcccchHHHHhccCC-CCccchHHHHHHHHHHHHHH
Confidence 9999999999999999984 2689999999999999999999999843 35678899999999999999
Q ss_pred HHHHHHHH
Q 028183 199 ALALVNRY 206 (212)
Q Consensus 199 aLaiv~~l 206 (212)
+|+|++++
T Consensus 170 alai~~~~ 177 (178)
T TIGR01614 170 TLAIIKML 177 (178)
T ss_pred HHHHHHhc
Confidence 99999875
No 8
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=1.6e-31 Score=246.91 Aligned_cols=157 Identities=25% Similarity=0.408 Sum_probs=132.3
Q ss_pred CCCchhhHHhccccCCCchhchhhhhccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHH
Q 028183 37 GSGTGTDFIRTSCNSTLYPEICYSTLSRYAS-TIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALH 115 (212)
Q Consensus 37 ~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~-s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~ 115 (212)
....+...|+..|+.|+||++|+++|++++. ....+|.++++++|+++++++..+..+++.++.... ...++ ..|++
T Consensus 39 ~~~~~~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~-~~~~~-~~AL~ 116 (553)
T PLN02708 39 SSPSTPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSA-GNVNR-TTAAT 116 (553)
T ss_pred cCCCccHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchH-HHHHH
Confidence 4557789999999999999999999999884 345689999999999999999999999998875420 12333 48999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCC-chhhHHHHHHHHHHHH
Q 028183 116 DCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVAD-GQMKEEVCDRVEYVKK 194 (212)
Q Consensus 116 dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~-~~~~~~l~~~~~~~~~ 194 (212)
||.|+|++++|+|++++.++.. ..++|++||||||||||+||.|||.+..+ +.++..| ..++++.+
T Consensus 117 DC~ELlddavd~L~~Sl~~L~~------------~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~-~~L~nvs~ 183 (553)
T PLN02708 117 NCLEVLSNSEHRISSTDIALPR------------GKIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTM-SFLDSLIG 183 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHhccHhHHHHHhhccCccchHHHHH-HHHHHHHH
Confidence 9999999999999999988763 25899999999999999999999986432 4556555 68899999
Q ss_pred HHHHHHHHHHHHHh
Q 028183 195 LTSNALALVNRYAE 208 (212)
Q Consensus 195 L~snaLaiv~~l~~ 208 (212)
|+||+|||+++++.
T Consensus 184 LtSNSLAmv~~~~~ 197 (553)
T PLN02708 184 LTSNALSMMASYDI 197 (553)
T ss_pred HHHHHHHhhhcccc
Confidence 99999999998653
No 9
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=4.2e-31 Score=244.71 Aligned_cols=159 Identities=20% Similarity=0.399 Sum_probs=136.4
Q ss_pred hhhHHhccccCCCchhchhhhhcc-ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 41 GTDFIRTSCNSTLYPEICYSTLSR-YASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 41 ~~~~i~~~C~~T~~p~lC~~tL~~-~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
....|+..|+.|+||++|+++|.+ .+. ..+|++|++++++++++++.++...+.+++.... ..+++++.|++||.|
T Consensus 52 ~~~~Ik~~C~~T~YP~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~-~~~~r~k~Al~DC~E 128 (572)
T PLN02990 52 TTKAVEAVCAPTDYKETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKA-ANDPETKGALELCEK 128 (572)
T ss_pred hhHHHHHhhcCCCCcHHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHHHHHHHHH
Confidence 456999999999999999999997 343 5689999999999999999999998877753211 578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHH
Q 028183 120 NFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNA 199 (212)
Q Consensus 120 ly~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sna 199 (212)
+|++++|+|++++.+|...+. ..+.+.++|++|||||||||++||+|||++. ++++++.+...+.++.+|+||+
T Consensus 129 LlddAvdeL~~Sl~~l~~~~~-----~~~~~~~~DvqTWLSAALTnq~TClDGF~e~-~s~lk~~~~~~l~nv~~LtSNA 202 (572)
T PLN02990 129 LMNDATDDLKKCLDNFDGFSI-----DQIEDFVEDLRVWLSGSIAYQQTCMDTFEEI-KSNLSQDMLKIFKTSRELTSNG 202 (572)
T ss_pred HHHHHHHHHHHHHHHHhhccc-----ccccchhHHHHHHHHHHhccHhhHHHhhhcc-chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999884321 2234468999999999999999999999873 3578889999999999999999
Q ss_pred HHHHHHHHh
Q 028183 200 LALVNRYAE 208 (212)
Q Consensus 200 Laiv~~l~~ 208 (212)
|||++++..
T Consensus 203 LAiv~~~~~ 211 (572)
T PLN02990 203 LAMITNISN 211 (572)
T ss_pred HHHHhhhhc
Confidence 999998765
No 10
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=1.4e-30 Score=239.46 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=146.4
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHhccccCCCchhchhhhhccccC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 028183 13 LFSTFFLQLHAIPAAAPASYPPDTGSGTGTDFIRTSCNSTLYPEICYSTLSRYAS-TIQQDPAQLASVAIGVTLSKAKRM 91 (212)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~-s~~~~~~~l~~~av~~a~~~a~~a 91 (212)
|+...++-.|.-..-...+-+|.. ......|+..|+.|+||++|+++|.+... +...+|++|++++|+++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~s~C~~T~YP~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a 84 (537)
T PLN02506 7 LLILMLLPVHLESLETTSSSPYQE--LNFQALIAQACQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLA 84 (537)
T ss_pred HHHHHHHhcchhccCCcccCchhh--hhHHHHHHHHccCCCCcHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333334444443333333333442 34556999999999999999999998643 345789999999999999999999
Q ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHh
Q 028183 92 ANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTD 171 (212)
Q Consensus 92 ~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~D 171 (212)
..++.++... ..+++.+.|++||.|+|++++++|.+++.+++.... + ....+..+|++|||||||||++||+|
T Consensus 85 ~~~v~~l~~~---~~~~r~~~Al~DC~EllddSvd~L~~Sl~el~~~~~-~---~~~~~~~~Dv~TWLSAALT~q~TC~D 157 (537)
T PLN02506 85 IDMITKFNAL---SISYREQVAIEDCKELLDFSVSELAWSLLEMNKIRA-G---HDNVAYEGNLKAWLSAALSNQDTCLE 157 (537)
T ss_pred HHHHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---cccccchhhHHhHHHHHhccHhHHHH
Confidence 9999988554 467888999999999999999999999998864321 0 11112468999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028183 172 GFEDVADGQMKEEVCDRVEYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 172 gf~~~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l~~ 208 (212)
||++. ++.++..|...+.++.+|+||+|||+++++.
T Consensus 158 GF~~~-~~~~k~~v~~~l~nv~~LtSNALAiv~~l~~ 193 (537)
T PLN02506 158 GFEGT-DRHLENFIKGSLKQVTQLISNVLAMYTQLHS 193 (537)
T ss_pred hhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99874 4567888999999999999999999998775
No 11
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=5.1e-30 Score=238.23 Aligned_cols=163 Identities=26% Similarity=0.416 Sum_probs=139.7
Q ss_pred CCCCC-CCCchhhHHhccccCCCchhchhhhhccccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCH
Q 028183 32 YPPDT-GSGTGTDFIRTSCNSTLYPEICYSTLSRYAS--TIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQ 108 (212)
Q Consensus 32 ~~p~~-~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~--s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~ 108 (212)
|+++. +.....+.|+..|+.|+||++|+++|.++.. +...+|++|++++|+++++++..+...+.++. ..++
T Consensus 68 ~~~~~~~~~~~~~~Ik~~C~~T~YP~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~-----~~~~ 142 (596)
T PLN02745 68 PVKSESPVSQVDKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK-----FENP 142 (596)
T ss_pred CCcCcCCCchHHHHHHHhcCCCCChHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCH
Confidence 44442 4556678999999999999999999998643 34578999999999999999999988887763 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHH
Q 028183 109 RAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDR 188 (212)
Q Consensus 109 ~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~ 188 (212)
+.+.|++||.|+|++++|+|++++.+|... . ..+.+.++|++|||||||||++||+|||++ +.++++|...
T Consensus 143 r~k~Al~DC~ELlddAid~L~~Sl~~l~~~-~-----~~~~~~~~Dv~TWLSAALT~q~TClDGF~e---~~l~s~m~~~ 213 (596)
T PLN02745 143 DEKDAIEDCKLLVEDAKEELKASISRINDE-V-----NKLAKNVPDLNNWLSAVMSYQETCIDGFPE---GKLKSEMEKT 213 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-----cccccchHHHHHHHHHHhccHhHHHhhhcc---cchHHHHHHH
Confidence 899999999999999999999999998741 1 124467899999999999999999999987 4578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028183 189 VEYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 189 ~~~~~~L~snaLaiv~~l~~ 208 (212)
+.++.+|+||+|||++.++.
T Consensus 214 l~~~~eLtSNALAiv~~lss 233 (596)
T PLN02745 214 FKSSQELTSNSLAMVSSLTS 233 (596)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998776
No 12
>PLN02197 pectinesterase
Probab=99.97 E-value=3.7e-30 Score=238.43 Aligned_cols=155 Identities=18% Similarity=0.318 Sum_probs=133.0
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCCCHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNIS--RQADYGSDQRAAAALHDC 117 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~--~~~~~~~~~~~~~al~dC 117 (212)
+..+.|+..|+.|+||++|+++|++.+ ..+|++|++++++++++++.++..++..+. ... ..+++++.|++||
T Consensus 36 ~~~k~I~s~C~~T~YP~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~--~~~~r~k~Al~DC 110 (588)
T PLN02197 36 PQMKAVQGICQSTSDKASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGS--SISPNNKAVLDYC 110 (588)
T ss_pred hhHHHHHHhcCCCCChHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--cCCHHHHHHHHHH
Confidence 345589999999999999999999987 358999999999999999999999988664 122 4688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHH
Q 028183 118 FSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTS 197 (212)
Q Consensus 118 ~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~s 197 (212)
.|+|++++|+|.+++.++.... ..+.+.++|++||||||||||+||.|||.+ ..++..|...+.++.+|+|
T Consensus 111 ~eLl~davd~L~~Sl~~l~~~~------~~~~~~~~DvqTWLSAALTnq~TClDGf~~---~~~k~~v~~~l~nv~~LtS 181 (588)
T PLN02197 111 KRVFMYALEDLSTIVEEMGEDL------NQIGSKIDQLKQWLTGVYNYQTDCLDDIEE---DDLRKTIGEGIANSKILTS 181 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc------cccccchhhHHHHHHHHHhChhhhhccccC---cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999997311 112345799999999999999999999987 3467789999999999999
Q ss_pred HHHHHHHHHHh
Q 028183 198 NALALVNRYAE 208 (212)
Q Consensus 198 naLaiv~~l~~ 208 (212)
|+|||++.+..
T Consensus 182 NaLAiv~~ls~ 192 (588)
T PLN02197 182 NAIDIFHSVVS 192 (588)
T ss_pred HHHHHhhccch
Confidence 99999998654
No 13
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=3.6e-30 Score=237.08 Aligned_cols=157 Identities=19% Similarity=0.331 Sum_probs=136.2
Q ss_pred CCchhhHHhccccCCCchhchhhhhccccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHH
Q 028183 38 SGTGTDFIRTSCNSTLYPEICYSTLSRYAST--IQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALH 115 (212)
Q Consensus 38 ~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s--~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~ 115 (212)
+....+.|+..|+.|+||++|+++|.+.+.+ ...+|.+|++++|+++++++..+...++++... ..+++.++|++
T Consensus 46 ~~~~~~~Iks~C~~T~YP~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~~---~~~~~~~aAL~ 122 (548)
T PLN02301 46 SSSPPSLLQTLCDRAHDQDSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRIR---INDPRDKAALA 122 (548)
T ss_pred CCCchHHHHHHhcCCCChHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCChHHHHHHH
Confidence 3445689999999999999999999988753 345899999999999999999999999988543 57889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHH
Q 028183 116 DCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKL 195 (212)
Q Consensus 116 dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L 195 (212)
||.|+|++++|+|++++.+++... .+.++|++|||||||||++||+|||.+. .++.|...++++.+|
T Consensus 123 DC~ELl~davd~L~~Sl~~l~~~~---------~~~~~Dv~TWLSAALT~q~TC~DGF~~~----~~~~~~~~l~n~~qL 189 (548)
T PLN02301 123 DCVELMDLSKDRIKDSVEALGNVT---------SKSHADAHTWLSSVLTNHVTCLDGINGP----SRQSMKPGLKDLISR 189 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc---------ccchHHHHHHHHHHhcchhhHHhhhhhh----hhhhHHHHHHHHHHH
Confidence 999999999999999999987432 1357999999999999999999999873 256788999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 028183 196 TSNALALVNRYAENG 210 (212)
Q Consensus 196 ~snaLaiv~~l~~~~ 210 (212)
+||+|||++.++..+
T Consensus 190 ~SNsLAiv~~l~~~~ 204 (548)
T PLN02301 190 ARTSLAILVSVSPAK 204 (548)
T ss_pred HHHHHHhhccccccc
Confidence 999999999876543
No 14
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=4.9e-30 Score=236.20 Aligned_cols=157 Identities=24% Similarity=0.399 Sum_probs=129.1
Q ss_pred hHHhccccCCCchhchhhhhccccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 028183 43 DFIRTSCNSTLYPEICYSTLSRYASTIQ-QDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNF 121 (212)
Q Consensus 43 ~~i~~~C~~T~~p~lC~~tL~~~~~s~~-~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely 121 (212)
..|+..|+.|+||++|+++|.+++.+.. .++.+++++++++++.++.++...+..+... ..+++.+.|++||.|+|
T Consensus 35 ~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~~---~~~~r~~~AL~DC~ELl 111 (539)
T PLN02995 35 TDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGKN---CTDFKKQAVLADCIDLY 111 (539)
T ss_pred HHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHH
Confidence 4999999999999999999999876533 4889999999999999999999999888553 46888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHH--HHHHHHHHHH
Q 028183 122 GDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRV--EYVKKLTSNA 199 (212)
Q Consensus 122 ~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~--~~~~~L~sna 199 (212)
++++|+|.+++.+++.... ..+.+.++|++|||||||||++||+|||++.. ++..+...+ .++.+|+||+
T Consensus 112 ~DAvD~L~~Sl~~l~~~~~-----~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~---~~~~v~~~v~~~~~~~ltSNa 183 (539)
T PLN02995 112 GDTIMQLNRTLQGVSPKAG-----AAKRCTDFDAQTWLSTALTNTETCRRGSSDLN---VSDFITPIVSNTKISHLISNC 183 (539)
T ss_pred HHHHHHHHHHHHHHhhccc-----cccccchhhHHHHHHHHhcchhhhhhhhcccc---chhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999884311 01123568999999999999999999998732 222333333 6799999999
Q ss_pred HHHHHHHHhcC
Q 028183 200 LALVNRYAENG 210 (212)
Q Consensus 200 Laiv~~l~~~~ 210 (212)
|||++.+...+
T Consensus 184 LAi~~~l~~~~ 194 (539)
T PLN02995 184 LAVNGALLTAG 194 (539)
T ss_pred HHHhhhhcccc
Confidence 99999887654
No 15
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=4.4e-30 Score=236.62 Aligned_cols=186 Identities=20% Similarity=0.375 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHhccccCCCchhchhhhhccccCCC-CCCHHHHHHHHHHHH
Q 028183 6 PLILLSFLFSTFFLQLHAIPAAAPASYPPDTGSGTGTDFIRTSCNSTLYPEICYSTLSRYASTI-QQDPAQLASVAIGVT 84 (212)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~-~~~~~~l~~~av~~a 84 (212)
-+||..+++.+|+++.+--.-.-++. +..++.++|+..|+.|+||++|+++|.+++... ..++..+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Iks~C~~T~YP~lC~~sLss~~~~~~s~~~~~ll~~sL~~A 81 (541)
T PLN02416 7 NLLLFLLFFSPFFFSSAWYSNASYTT-----SLDPHLSSLTSFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTA 81 (541)
T ss_pred HHHHHHHHcchhhccchhhccccccc-----CCchHHHHHHHhcCCCCChHHHHHHHhhcccccCCCCHHHHHHHHHHHH
Confidence 35666677778888854433211111 223356799999999999999999999887432 446778999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhc
Q 028183 85 LSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALT 164 (212)
Q Consensus 85 ~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt 164 (212)
+.++..+...++.+.... ..++++++|++||.|+|++++|+|++++.+|+.. + .+.++|++||||||||
T Consensus 82 ~~~~~~~s~l~s~~~~~~--~~~~~~k~AL~DC~El~~dAvD~L~~Sl~~L~~~-------~--~~~~~DvqTWLSAALT 150 (541)
T PLN02416 82 ISEAGKLTNLLSGAGQSS--NIIEKQRGTIQDCKELHQITVSSLKRSVSRIQAG-------D--SRKLADARAYLSAALT 150 (541)
T ss_pred HHHHHHHHHHHHhhhccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c--ccchhhHHHHHHHHhc
Confidence 999888887777654332 4578889999999999999999999999999742 1 1368999999999999
Q ss_pred chhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028183 165 DEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 165 ~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l~~ 208 (212)
|++||+|||++. ++.+++.+...+.++.+++||+|||++.+..
T Consensus 151 ~q~TC~DGF~~~-~~~~~~~i~~~~~~v~qltSNALAlv~~~~~ 193 (541)
T PLN02416 151 NKNTCLEGLDSA-SGPLKPKLVNSFTSTYKHVSNSLSMLPKSRR 193 (541)
T ss_pred chhhHHhhhhhc-CcchhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999874 3567888999999999999999999987654
No 16
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=1.1e-29 Score=235.17 Aligned_cols=152 Identities=24% Similarity=0.336 Sum_probs=129.7
Q ss_pred HhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCHHHHHHHHHHHHHHHH
Q 028183 45 IRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYG-SDQRAAAALHDCFSNFGD 123 (212)
Q Consensus 45 i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~-~~~~~~~al~dC~ely~~ 123 (212)
++..|+.|+||++|+++|+.. ...+|.++++++|+++++++..+...+.++..... . .+++++.|++||.|+|++
T Consensus 35 ~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~-~~~~~r~k~AL~DC~ELldd 110 (566)
T PLN02713 35 PSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNS-TLLSKSAIRALEDCQFLAGL 110 (566)
T ss_pred CccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999762 24689999999999999999999999998876430 1 388899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccC-CchhhHHHHHHHHHHHHHHHHHHHH
Q 028183 124 AVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVA-DGQMKEEVCDRVEYVKKLTSNALAL 202 (212)
Q Consensus 124 a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~-~~~~~~~l~~~~~~~~~L~snaLai 202 (212)
++|+|.+++.+++... +..+.+.++|++||||||||||+||+|||.+.. ++.++..|...+.++.+|+||+|||
T Consensus 111 avD~L~~Sl~~l~~~~-----~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSNaLAl 185 (566)
T PLN02713 111 NIDFLLSSFETVNSSS-----KTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSVSLAL 185 (566)
T ss_pred HHHHHHHHHHHHhhcc-----ccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998431 112346789999999999999999999998742 3456777899999999999999999
Q ss_pred HHH
Q 028183 203 VNR 205 (212)
Q Consensus 203 v~~ 205 (212)
++.
T Consensus 186 v~~ 188 (566)
T PLN02713 186 FTK 188 (566)
T ss_pred hcc
Confidence 986
No 17
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.96 E-value=7.1e-29 Score=193.62 Aligned_cols=148 Identities=37% Similarity=0.657 Sum_probs=127.6
Q ss_pred chhhHHhccccCCCchh-chhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPE-ICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCF 118 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~-lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ 118 (212)
++.+.|+.+|++|+||. +|+.+|.+++.....|+.+|++++|++++.++..+..++.+++... +.++..+.++++|.
T Consensus 2 s~~~~I~~~C~~T~~~~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~--~~~~~~~~~l~~C~ 79 (152)
T PF04043_consen 2 STSSLIQDICKSTPYPYNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNP--SKDPNAKQALQDCQ 79 (152)
T ss_dssp --HHHHHHHHCTSS--HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---S-THHHHHHHHHHH
T ss_pred chHHHHHHHhhCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCHHhhHHHHHHH
Confidence 36789999999999777 9999999997778899999999999999999999999999988764 57899999999999
Q ss_pred HHHHHHHHHHHHHHHHH--HhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHH
Q 028183 119 SNFGDAVEEIYGSLKQM--RQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLT 196 (212)
Q Consensus 119 ely~~a~d~L~~a~~al--~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~ 196 (212)
++|++++++|+++++++ .. ++|+++++|||+|+++++||+|||.+ ..++++++|...+.++.+|+
T Consensus 80 ~~y~~a~~~l~~a~~~l~~~~------------~~~~~~~~~lsaa~~~~~tC~~~f~~-~~~~~~~~l~~~~~~~~~l~ 146 (152)
T PF04043_consen 80 ELYDDAVDSLQRALEALNSKN------------GDYDDARTWLSAALTNQDTCEDGFEE-AGSPVKSPLVQRNDNVEKLS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHH--HH------------T-HHHHHHHHHHHHHHHHHHHHHC-T-TSSS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccc------------chhHHHHHHHHHHHHHHHHHHHHhcc-cCCCccchHHHHHHHHHHHH
Confidence 99999999999999999 43 37999999999999999999999953 13467889999999999999
Q ss_pred HHHHHH
Q 028183 197 SNALAL 202 (212)
Q Consensus 197 snaLai 202 (212)
+|+|+|
T Consensus 147 s~aLai 152 (152)
T PF04043_consen 147 SNALAI 152 (152)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999997
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=1.3e-28 Score=225.07 Aligned_cols=155 Identities=25% Similarity=0.363 Sum_probs=135.6
Q ss_pred CchhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHH
Q 028183 39 GTGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGS--DQRAAAALHD 116 (212)
Q Consensus 39 ~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~--~~~~~~al~d 116 (212)
.+....|+..|+.|+||++|+++|++.+. +|+++++++|++++.++..+...+.++.... +. +++.+.+++|
T Consensus 19 ~~~~~~I~~~C~~T~YP~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~--~~~~~~r~~~Al~D 92 (497)
T PLN02698 19 FAYQNEVQRECSFTKYPSLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQL--SLEEATYTPSVSDS 92 (497)
T ss_pred hhHHHHHHHhccCCCChHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCcChHHHHHHHH
Confidence 56788999999999999999999998763 8999999999999999999999999876543 33 4777899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccC---CchhhHHHHHHHHHHH
Q 028183 117 CFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVA---DGQMKEEVCDRVEYVK 193 (212)
Q Consensus 117 C~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~---~~~~~~~l~~~~~~~~ 193 (212)
|.|+|++++++|++++.+|.... .+.++|++|||||||||++||+|||.+.. ++.+++.|...+.++.
T Consensus 93 C~Ell~dsvd~L~~Sl~~l~~~~---------~~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v~~~i~~~l~~~~ 163 (497)
T PLN02698 93 CERLMKMSLKRLRQSLLALKGSS---------RKNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLS 163 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---------ccchhHHHHHHHHhhcchhhHHHHHhhhcccccchHHHHHHHHHHHHH
Confidence 99999999999999999988531 14689999999999999999999995421 3467889999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 028183 194 KLTSNALALVNRYAE 208 (212)
Q Consensus 194 ~L~snaLaiv~~l~~ 208 (212)
+|+||+|||++.+..
T Consensus 164 ~ltSNALAmv~~l~~ 178 (497)
T PLN02698 164 RLVSNSLALVNRITP 178 (497)
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999998876
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.95 E-value=7.1e-28 Score=222.10 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=128.8
Q ss_pred ccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHHHH
Q 028183 47 TSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQA--DYGSDQRAAAALHDCFSNFGDA 124 (212)
Q Consensus 47 ~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~--~~~~~~~~~~al~dC~ely~~a 124 (212)
..|+.|+||++|+++|++++.+. .+|.++++++|++++.++..+...+.++.... ..+.+++++.|++||+|+|+++
T Consensus 4 ~~C~~T~YP~lC~ssLs~~~~~~-~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r~~~AL~DC~ELlddS 82 (538)
T PLN03043 4 LACKSTLYPKLCRSILSTVKSSP-SDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHEEIGALADCGELSELN 82 (538)
T ss_pred cccCCCCCcHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999999877543 58999999999999999999999999876321 0036788889999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028183 125 VEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNALALVN 204 (212)
Q Consensus 125 ~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaLaiv~ 204 (212)
+|+|.+++.+|..... ...+..+|++||||||||||+||.|||.+. ++.++..|...+.++.+|+||+|||++
T Consensus 83 vD~L~~Sl~~L~~~~~------~~~~~~~DvqTWLSAALTnqdTClDGF~~~-~~~~k~~i~~~l~nvt~LtSNaLAlv~ 155 (538)
T PLN03043 83 VDYLETISSELKSAEL------MTDALVERVTSLLSGVVTNQQTCYDGLVDS-KSSFAAALGAPLGNLTRLYSVSLGLVS 155 (538)
T ss_pred HHHHHHHHHHHhcccc------ccccchhhHHHhHHHhhcChhhhhchhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999984310 013457899999999999999999999873 356788899999999999999999998
Q ss_pred H
Q 028183 205 R 205 (212)
Q Consensus 205 ~ 205 (212)
.
T Consensus 156 ~ 156 (538)
T PLN03043 156 H 156 (538)
T ss_pred h
Confidence 5
No 20
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=7.9e-24 Score=193.99 Aligned_cols=129 Identities=19% Similarity=0.369 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhh
Q 028183 70 QQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFR 149 (212)
Q Consensus 70 ~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~ 149 (212)
..+|.+|++++|+++++++..+..++..+........++++++|++||.|+|++++|+|++++.++....
T Consensus 48 ~~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r~~~Al~DC~El~~davd~L~~S~~~l~~~~---------- 117 (530)
T PLN02933 48 TKTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHRERCAFEDCLGLLDDTISDLTTAISKLRSSS---------- 117 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 4689999999999999999999999998865321046889999999999999999999999999888421
Q ss_pred hhhhhHHHHHHHhhcchhHHHhcccccC-------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028183 150 FQMSNVQTWMSAALTDEETCTDGFEDVA-------DGQMKEEVCDRVEYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 150 ~~~~dv~twLSAAlt~~~TC~Dgf~~~~-------~~~~~~~l~~~~~~~~~L~snaLaiv~~l~~ 208 (212)
+.++|++|||||||||++||+|||.+.. ++.+++.|...+.++.+|+||+|||++.++.
T Consensus 118 ~~~~Dv~TWLSAALT~q~TC~DGF~~~~~~~~~~~~~~vk~~v~~~l~~v~~LtSNALAlv~~ls~ 183 (530)
T PLN02933 118 PEFNDVSMLLSNAMTNQDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNISG 183 (530)
T ss_pred cchhHHHHHHHHHhcchhhHhhhhhccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2589999999999999999999998632 2357788999999999999999999998764
No 21
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.89 E-value=6.8e-23 Score=187.43 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=124.7
Q ss_pred chhHHHHHHHHHHH-HHHhhcccCCCCCCCCCCCCCchhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHH
Q 028183 5 RPLILLSFLFSTFF-LQLHAIPAAAPASYPPDTGSGTGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGV 83 (212)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~ 83 (212)
-|++|+.|+++-|+ +++.+........|+.+.+++...+.++.. +||..|+.+|++.-. .-|..++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~---~~~~~~~~~~~~~ 85 (529)
T PLN02170 13 FPITLMFLLILNFLYLSAVVFASNSNSHFSKFSRHPNSDSSSRSS----PSSSSKQGFLSSVQE---SMNHALFARSLAF 85 (529)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCCCchhccCCCccccccCC----CCcchhhhhhhhhhc---cChHHHHHhhhHh
Confidence 35667777777666 344455554445555665666565666555 999999999997643 2366788888877
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhh
Q 028183 84 TLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAAL 163 (212)
Q Consensus 84 a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAl 163 (212)
.+..... . .. ....+|++||+|+|++++|+|.+++..... .+..+|++|||||||
T Consensus 86 ~~~~~~~---------~----~~-~~~~~Al~DC~ELlddavd~L~~S~~~~~~-----------~~~~~DvqTWLSAAL 140 (529)
T PLN02170 86 NLTLSHR---------T----VQ-THTFDPVNDCLELLDDTLDMLSRIVVIKHA-----------DHDEEDVHTWLSAAL 140 (529)
T ss_pred hhhhhhh---------h----cc-cchhHHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccchhHHHHHHHHHH
Confidence 5541111 1 11 112579999999999999999998854331 246899999999999
Q ss_pred cchhHHHhcccccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028183 164 TDEETCTDGFEDVA-DGQMKEEVCDRVEYVKKLTSNALALVNRYAENG 210 (212)
Q Consensus 164 t~~~TC~Dgf~~~~-~~~~~~~l~~~~~~~~~L~snaLaiv~~l~~~~ 210 (212)
||++||.|||++.. ...++..+...+.++.+|+||+|||++.+...+
T Consensus 141 Tnq~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~~~~~ 188 (529)
T PLN02170 141 TNQETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSVKSKH 188 (529)
T ss_pred hchhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999998742 234555677778899999999999999876544
No 22
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.88 E-value=4.2e-22 Score=182.66 Aligned_cols=128 Identities=24% Similarity=0.383 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhh
Q 028183 73 PAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQM 152 (212)
Q Consensus 73 ~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~ 152 (212)
+..+++++++++++++..+..++.++... ..++++++|++||.|++++++|+|++++.+|+..... + .......
T Consensus 37 ~~~~~~~~L~~tl~~a~~a~~~vs~l~~~---~~~~r~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~--~-~~~~~~~ 110 (520)
T PLN02201 37 PPSEFVSSLKTTVDVIRKVVSIVSQFDKV---FGDSRLSNAISDCLDLLDFAAEELSWSISASQNPNGK--D-NSTGDVG 110 (520)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-cccccch
Confidence 45788999999999999999999988654 4678889999999999999999999999999843210 0 0012357
Q ss_pred hhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 153 SNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNALALVNRYA 207 (212)
Q Consensus 153 ~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l~ 207 (212)
+|++|||||||||++||+|||.+. ++.++..+...+.++.+|+||+|||++.+.
T Consensus 111 ~DvqTWLSAALTnq~TClDGF~~~-~~~~k~~v~~~l~nvt~LtSNaLALv~~~~ 164 (520)
T PLN02201 111 SDLRTWLSAALSNQDTCIEGFDGT-NGIVKKLVAGSLSQVGSTVRELLTMVHPPP 164 (520)
T ss_pred hHHHHHHHhhhcchhhhhhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999874 355677788889999999999999998743
No 23
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.88 E-value=4.9e-22 Score=180.48 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=126.8
Q ss_pred hccccCCCchhchhhhhcccc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHH----
Q 028183 46 RTSCNSTLYPEICYSTLSRYA----STIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDC---- 117 (212)
Q Consensus 46 ~~~C~~T~~p~lC~~tL~~~~----~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC---- 117 (212)
-.+|.+++||+.|...+.... .....++..++.++++.++.++..+...+.++.... ..+++++.++.||
T Consensus 2 ~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~a~~dc~~~c 79 (509)
T PLN02488 2 IGVCKGYDDKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLL--EEMENDMLGVKEDTNLF 79 (509)
T ss_pred ceecCCCCChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhchhhhhhHHHhHHHH
Confidence 368999999999999987765 333456899999999999999999999999887763 2288889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHH
Q 028183 118 FSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTS 197 (212)
Q Consensus 118 ~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~s 197 (212)
.|+|++++|+|.+++..+..... ......+|++||||||||||+||.|||.+ +.++..|...+.++.+|+|
T Consensus 80 ~el~~~~~~~l~~s~~~~~~~~~------~~~~~~~d~~twLSa~lt~q~TC~dg~~~---~~~~~~~~~~l~~~~~~~s 150 (509)
T PLN02488 80 EEMMESAKDRMIRSVEELLGGES------PNLGSYENVHTWLSGVLTSYITCIDEIGE---GAYKRRVEPELEDLISRAR 150 (509)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc------cccCcHHHHHHHHHHhHhchhhHhccccC---cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999863211 01124689999999999999999999954 4677889999999999999
Q ss_pred HHHHHHHHHH
Q 028183 198 NALALVNRYA 207 (212)
Q Consensus 198 naLaiv~~l~ 207 (212)
|+|||+..+.
T Consensus 151 n~La~~~~~~ 160 (509)
T PLN02488 151 VALAIFISIS 160 (509)
T ss_pred HHHHhhcccc
Confidence 9999998765
No 24
>PLN02916 pectinesterase family protein
Probab=99.66 E-value=4.3e-16 Score=142.33 Aligned_cols=82 Identities=27% Similarity=0.422 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHH
Q 028183 110 AAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRV 189 (212)
Q Consensus 110 ~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~ 189 (212)
..+|++||.|+|++++|+|.+++..+.. ...+|++|||||||||++||.|||.+.. ... ...+
T Consensus 61 ~~~Al~DC~ELl~dSvd~L~~Sl~~~~~------------~~~~DvqTWLSAALTnq~TClDGf~~~~--~~~---~~~v 123 (502)
T PLN02916 61 LGEALSDCEKLYDESEARLSKLLVSHEN------------FTVEDARTWLSGVLANHHTCLDGLEQKG--QGH---KPMA 123 (502)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcc------------CchHHHHHHHHHHHhCHhHHHHhhhhcc--ccc---hHHH
Confidence 4589999999999999999999976552 2479999999999999999999998632 222 2346
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028183 190 EYVKKLTSNALALVNRYAE 208 (212)
Q Consensus 190 ~~~~~L~snaLaiv~~l~~ 208 (212)
.++.+|+||+|||++.+..
T Consensus 124 ~nvt~ltSNaLAlv~~~~~ 142 (502)
T PLN02916 124 HNVTFVLSEALALYKKSRG 142 (502)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 6999999999999998765
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=85.55 E-value=0.74 Score=33.38 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=17.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcc
Q 028183 1 MKSPRPLILLSFLFSTFFLQLHAIP 25 (212)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (212)
|-|+.++||..||.+.||+++.+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 5666677777777788888866644
No 26
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=67.32 E-value=29 Score=21.91 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028183 84 TLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIY 129 (212)
Q Consensus 84 a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~ 129 (212)
++..++++...+..+.-. ..|+..+..+..|.+.++..+++|+
T Consensus 5 ~lAslK~~qA~Le~fal~---T~d~~AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 5 TLASLKKAQADLETFALQ---TQDQEAKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHhhHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555554433 4678888899999999888888775
No 27
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.45 E-value=46 Score=23.92 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHH-----hhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 73 PAQLASVAI--GVTLSKAKRMANYVSN-----ISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLK 133 (212)
Q Consensus 73 ~~~l~~~av--~~a~~~a~~a~~~i~~-----l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~ 133 (212)
+.+.+...| ..|..++.+..+.++. -...++...++..+.|+.-|.+-|.+|-.-+.++..
T Consensus 18 ~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 18 TEGELMNQVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444334 3455555565555442 122221136788899999999999999887777654
No 28
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.75 E-value=87 Score=25.53 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 69 IQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQ 134 (212)
Q Consensus 69 ~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~a 134 (212)
...||.-|..+-. .++...+.+..++..-+ +.-......--+|.+.|.++|+.|.+++.+
T Consensus 120 p~vDp~VL~DlE~-----~~~el~~~vD~llr~lg-g~lh~is~lt~~~vq~yr~aV~kl~d~~Da 179 (222)
T KOG4514|consen 120 PEVDPSVLSDLEL-----EAQELASSVDNLLRNLG-GLLHSISSLTADNVQVYRNAVNKLTDTLDA 179 (222)
T ss_pred CCCChHHHHHHHH-----HHHHHHHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Confidence 4567755443322 33444455555555321 122233455679999999999999887765
No 29
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=40.83 E-value=9.1 Score=29.47 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHhh
Q 028183 1 MKSPRPLILLSFLFSTFFLQLHA 23 (212)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (212)
|+-||-.||..||+++.|++-+.
T Consensus 1 m~pr~l~~LavLL~~A~Lfag~g 23 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAGVG 23 (143)
T ss_dssp -----------------------
T ss_pred Ccccccccccccccccccccccc
Confidence 66778788888888888888333
No 30
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.11 E-value=2e+02 Score=23.72 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=53.9
Q ss_pred ccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-HHHHHHHHHHHHHHHHHH
Q 028183 47 TSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSD-QRAAAALHDCFSNFGDAV 125 (212)
Q Consensus 47 ~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~-~~~~~al~dC~ely~~a~ 125 (212)
.-|. +.|+..|.. +.-+.+..-.|-++=++-+..-+.++..+++..++.+.+-. +.+ ...+..+++=.|.-+++.
T Consensus 5 ~gCq-saYY~amEk-vG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~--ggdLe~~Y~~ln~~ye~s~~~A 80 (201)
T PF11172_consen 5 TGCQ-SAYYSAMEK-VGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFD--GGDLEDKYNALNDEYESSEDAA 80 (201)
T ss_pred HHhH-HHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 3476 669999988 55555555567777788889999999999998888877654 333 223444444444444444
Q ss_pred HHHHHHHHHH
Q 028183 126 EEIYGSLKQM 135 (212)
Q Consensus 126 d~L~~a~~al 135 (212)
+++.+-+.++
T Consensus 81 ~~V~~RI~~v 90 (201)
T PF11172_consen 81 EEVSDRIDAV 90 (201)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 31
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=36.38 E-value=33 Score=24.27 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 028183 5 RPLILLSFLFSTFFLQLHA 23 (212)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (212)
|.+++|++|.++|-+.+++
T Consensus 3 RRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVALAA 21 (100)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 4588899999999888544
No 32
>PRK09125 DNA ligase; Provisional
Probab=35.63 E-value=38 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCCCCCCCCCc
Q 028183 6 PLILLSFLFSTFFLQLHAIPAA-APASYPPDTGSGT 40 (212)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~ 40 (212)
+++||.+|.+++++.++.++++ .+++|+|-..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~~ 36 (282)
T PRK09125 1 FLLLLLLLALALLLALLLLASSANAAAPDLQLATVY 36 (282)
T ss_pred CchHHHHHHHHHHHHHHHhccccccCCCCceechhc
Confidence 3677778888888887765544 3455555544443
No 33
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.13 E-value=36 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028183 112 AALHDCFSNFGDAVEEIYGSLKQMRQI 138 (212)
Q Consensus 112 ~al~dC~ely~~a~d~L~~a~~al~~~ 138 (212)
+-.+||.|-+-+-+.++++|.+++++.
T Consensus 65 ATfnDc~eA~veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 65 ATFNDCEEAAVELQSQIKEARADLARK 91 (95)
T ss_pred eccCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999853
No 34
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=31.97 E-value=1.2e+02 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLK 133 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~ 133 (212)
..+..+..+++.|.+-|-++-..+.+...
T Consensus 36 ~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 36 SLSSKEESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999998888766543
No 35
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=31.29 E-value=19 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=8.7
Q ss_pred CCCchhhHHhccccCCCchhc
Q 028183 37 GSGTGTDFIRTSCNSTLYPEI 57 (212)
Q Consensus 37 ~~~~~~~~i~~~C~~T~~p~l 57 (212)
+.....+.|+..|..|+||.+
T Consensus 44 PAg~~~~DieqaCa~tpFPtL 64 (80)
T PF11895_consen 44 PAGKSPADIEQACASTPFPTL 64 (80)
T ss_dssp GTT--GGGB--S-SSS-----
T ss_pred CCCCCHHHHHhhccCCCCCCC
Confidence 334568899999999999964
No 36
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=36 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHHHHHhhcc
Q 028183 3 SPRPLILLSFLFSTFFLQLHAIP 25 (212)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (212)
.|-+.|+||+.|.+..+.||+++
T Consensus 59 ~PvvVLvmSvgFIasV~~LHi~g 81 (88)
T KOG3457|consen 59 DPVVVLVMSVGFIASVFALHIWG 81 (88)
T ss_pred CCeeehhhhHHHHHHHHHHHHHH
Confidence 36678999999999999999976
No 37
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=28.98 E-value=3.8 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHhccccC
Q 028183 13 LFSTFFLQLHAIPAAAPASYPPDTGSGTGTDFIRTSCNS 51 (212)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~C~~ 51 (212)
|.+|..+.+.++|+-++|.|-|+ +.+-.++|+..-+-
T Consensus 3 lwlt~vialtClggLasPgPvp~--~~alkELIeELvNI 39 (43)
T PF03487_consen 3 LWLTVVIALTCLGGLASPGPVPS--STALKELIEELVNI 39 (43)
T ss_dssp --------------------S-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCc--hHHHHHHHHHHHhh
Confidence 34566666668888777666554 22445555554443
No 38
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.77 E-value=98 Score=20.50 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCC
Q 028183 10 LSFLFSTFFLQLHAIPAAAPASYPPD 35 (212)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~ 35 (212)
|.|.+++..++..++++.+.+...|.
T Consensus 11 l~~~LsA~~FSasamAa~~~~~~~~~ 36 (61)
T PF15284_consen 11 LVFILSAAGFSASAMAADSSPHRKPA 36 (61)
T ss_pred HHHHHHHhhhhHHHHHHhhCCCCCCc
Confidence 34444555556557777666655555
No 39
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.57 E-value=1.8e+02 Score=18.18 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccc
Q 028183 121 FGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFED 175 (212)
Q Consensus 121 y~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~ 175 (212)
|+.++.+|+..+..|.+++. ..++.-....-++.-..-|.+-+.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~----------sLdes~~lyeeg~~l~~~c~~~L~~ 45 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGEL----------SLDESLKLYEEGMELIKKCQERLEE 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777775432 3555555555566666666655544
No 40
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.83 E-value=74 Score=22.76 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028183 112 AALHDCFSNFGDAVEEIYGSLKQMRQI 138 (212)
Q Consensus 112 ~al~dC~ely~~a~d~L~~a~~al~~~ 138 (212)
...+||.|-|.+=..++++|.+.+++.
T Consensus 61 ~tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 61 ATFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999999999998864
No 41
>PRK11376 hlyE hemolysin E; Provisional
Probab=20.70 E-value=5.2e+02 Score=21.86 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHH
Q 028183 80 AIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWM 159 (212)
Q Consensus 80 av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twL 159 (212)
.++.+++.+..++.+-...+.+. .. ...++++++.+++++-.-.+. -....+++++..
T Consensus 12 ~vk~ai~tad~ald~Yr~ELDqk--Vk-----------f~eLQeAIdeIDRaMlgYqG~---------AK~~Ld~IRsLn 69 (303)
T PRK11376 12 VVKNAIETADGALDLYNKYLDQV--IP-----------WQTFDETIKELSRFKQEYSQA---------ASVLVGDIKTLL 69 (303)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcc--CC-----------HHHHHHHHHHHHHHhhhhhhH---------HHHhhhHHHHHH
Confidence 35555566666666666655543 11 234566777777766444321 133688888888
Q ss_pred HHhhcchhHHHhcc
Q 028183 160 SAALTDEETCTDGF 173 (212)
Q Consensus 160 SAAlt~~~TC~Dgf 173 (212)
|.|-...+.|.+-.
T Consensus 70 SdAr~kYqecV~pV 83 (303)
T PRK11376 70 MDSQDKYFEATQTV 83 (303)
T ss_pred HHHHHHHHHhhHHH
Confidence 88877777776543
Done!