Query 028183
Match_columns 212
No_of_seqs 120 out of 841
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 3.1E-34 1.1E-38 223.6 16.7 150 41-207 2-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 6.3E-34 2.2E-38 222.2 15.1 149 40-207 3-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 3.6E-33 1.2E-37 217.4 13.5 147 40-206 2-149 (150)
4 3cjh_B Mitochondrial import in 22.2 1.5E+02 0.0051 18.4 4.5 29 105-133 33-61 (64)
5 2bsk_B Mitochondrial import in 18.8 2.2E+02 0.0075 19.0 5.3 33 105-137 42-74 (90)
6 2l7n_A Talin-1; integrin, bund 18.3 3.2E+02 0.011 20.7 8.0 88 75-170 76-164 (168)
7 2bsk_A Mitochondrial import in 17.8 2.3E+02 0.008 18.9 5.4 32 105-136 40-71 (89)
8 3dxr_B Mitochondrial import in 17.1 1.9E+02 0.0066 19.7 4.4 32 105-136 55-86 (95)
9 1r7c_A Genome polyprotein; mem 15.7 75 0.0026 17.3 1.5 12 152-163 16-27 (31)
10 3dxr_A Mitochondrial import in 15.5 2.7E+02 0.0091 18.6 4.8 32 105-136 49-80 (89)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=3.1e-34 Score=223.62 Aligned_cols=150 Identities=19% Similarity=0.361 Sum_probs=137.3
Q ss_pred hhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 028183 41 GTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSN 120 (212)
Q Consensus 41 ~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~el 120 (212)
+.++|+.+|++|+||++|+++|.++|.+...||++|+++++++++.++..+..++.++.+. ..+++.+.+++||.|+
T Consensus 2 ~~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~---~~~~~~~~al~dC~e~ 78 (153)
T 1xg2_B 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ---ATDPKLKGRYETCSEN 78 (153)
T ss_dssp CCHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHH
T ss_pred hHhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999988778999999999999999999999999998765 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHHH
Q 028183 121 FGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNAL 200 (212)
Q Consensus 121 y~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~snaL 200 (212)
|++++++|.+++.+++.+ +++|+++|||+|++|++||+|||.+.. .++++|...+.++.+|++|+|
T Consensus 79 y~~a~~~L~~a~~~l~~~------------~~~d~~t~lSaAlt~~~tC~dgf~~~~--~~~~~l~~~~~~~~~l~s~aL 144 (153)
T 1xg2_B 79 YADAIDSLGQAKQFLTSG------------DYNSLNIYASAAFDGAGTCEDSFEGPP--NIPTQLHQADLKLEDLCDIVL 144 (153)
T ss_dssp HHHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHHHHHHHCCSSS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHhcccchHHHHhccCC--CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999842 589999999999999999999998742 467889999999999999999
Q ss_pred HHHHHHH
Q 028183 201 ALVNRYA 207 (212)
Q Consensus 201 aiv~~l~ 207 (212)
+|++.+.
T Consensus 145 ai~~~l~ 151 (153)
T 1xg2_B 145 VISNLLP 151 (153)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9999763
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=6.3e-34 Score=222.21 Aligned_cols=149 Identities=21% Similarity=0.349 Sum_probs=134.3
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
++.+.|+.+|++|+||++|+++| +|.+...|+++|+++++++++.++..+..++.++.+. ..+++.+.+++||.|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~---~~~~~~~~al~dC~e 77 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDG---GVDPRSKLAYRSCVD 77 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 45678999999999999999999 5666678999999999999999999999999998776 458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHHH
Q 028183 120 NFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSNA 199 (212)
Q Consensus 120 ly~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sna 199 (212)
+|++++++|.+++.+++.. +++|+++|||+|++|++||+|||.+.. +++++|..++.++.+|++|+
T Consensus 78 ~y~~a~~~L~~a~~~l~~~------------~~~d~~t~lSaAlt~~~tC~dgf~~~~--~~~~~l~~~~~~~~~l~s~a 143 (153)
T 1x91_A 78 EYESAIGNLEEAFEHLASG------------DGMGMNMKVSAALDGADTCLDDVKRLR--SVDSSVVNNSKTIKNLCGIA 143 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHHHHTTCS--SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHccHhHHHHHhccCC--CCcCHHHHHhHHHHHHHHHH
Confidence 9999999999999999842 589999999999999999999998742 46788999999999999999
Q ss_pred HHHHHHHH
Q 028183 200 LALVNRYA 207 (212)
Q Consensus 200 Laiv~~l~ 207 (212)
|+|++.+.
T Consensus 144 Lai~~~l~ 151 (153)
T 1x91_A 144 LVISNMLP 151 (153)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHcc
Confidence 99999864
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=3.6e-33 Score=217.40 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=132.0
Q ss_pred chhhHHhccccCCCchhchhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 028183 40 TGTDFIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFS 119 (212)
Q Consensus 40 ~~~~~i~~~C~~T~~p~lC~~tL~~~~~s~~~~~~~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~~~al~dC~e 119 (212)
++.++|+.+|++|+||++|+++|.++|.+...|+.+|+++++++++.++..+..++.++.+. ..+++.+.+++||.|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~---~~~~~~~~al~dC~e 78 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS---NPPAAWKGPLKNCAF 78 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---CCCGGGHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 46789999999999999999999999988778999999999999999999999999998765 457888999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhcCCcchhhhhhhhhHHHHHHHhhcchhHHHhcccccCCchhhHHHHHHHHHHHHHHHH
Q 028183 120 NFGDAV-EEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDVADGQMKEEVCDRVEYVKKLTSN 198 (212)
Q Consensus 120 ly~~a~-d~L~~a~~al~~~~~~~~~~~~~~~~~~dv~twLSAAlt~~~TC~Dgf~~~~~~~~~~~l~~~~~~~~~L~sn 198 (212)
+|++++ ++|.+++.+++.+ +++++++|||+|++|++||+|||.+. +++|..++.++.+|++|
T Consensus 79 ~y~~a~~~~L~~a~~~l~~~------------~~~~~~t~lsaAlt~~~tC~dgf~~~-----~~pl~~~~~~~~~l~s~ 141 (150)
T 2cj4_A 79 SYKVILTASLPEAIEALTKG------------DPKFAEDGMVGSSGDAQECEEYFKGS-----KSPFSALNIAVHELSDV 141 (150)
T ss_dssp HHHHHHHTHHHHHHHHHHHS------------CHHHHHHHHHHHHHHHHHHHHTTTTS-----CCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHHHHhhCCC-----CCccHHHHHHHHHHHHH
Confidence 999999 7999999999842 58999999999999999999999852 33588899999999999
Q ss_pred HHHHHHHH
Q 028183 199 ALALVNRY 206 (212)
Q Consensus 199 aLaiv~~l 206 (212)
+|+|++.+
T Consensus 142 aLaii~~l 149 (150)
T 2cj4_A 142 GRAIVRNL 149 (150)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999864
No 4
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=22.22 E-value=1.5e+02 Score=18.42 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLK 133 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~ 133 (212)
..+..+..++..|.+-|-++-..+.+...
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~ 61 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQ 61 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999998887766544
No 5
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=18.76 E-value=2.2e+02 Score=19.00 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQ 137 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~al~~ 137 (212)
..+..+..|+..|.+-|-++-..+.+....+..
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999988887776653
No 6
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=18.30 E-value=3.2e+02 Score=20.70 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhhhhhh
Q 028183 75 QLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRA-AAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMS 153 (212)
Q Consensus 75 ~l~~~av~~a~~~a~~a~~~i~~l~~~~~~~~~~~~-~~al~dC~ely~~a~d~L~~a~~al~~~~~~~~~~~~~~~~~~ 153 (212)
.+.-++-+-+...++....-++.+... ..++.. +..+.-+.++++++..-++++...+...+. ........
T Consensus 76 ~y~g~aar~~A~aL~~lt~avrgvaat---t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d-----~~~~~~L~ 147 (168)
T 2l7n_A 76 NYAGIAARDVAGGLRSLAQAARGVAAL---TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGD-----PESQQRLA 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSC-----HHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHH
Confidence 344444344444444444444555444 344443 344555557888877777777766653210 11112344
Q ss_pred hHHHHHHHhhcchhHHH
Q 028183 154 NVQTWMSAALTDEETCT 170 (212)
Q Consensus 154 dv~twLSAAlt~~~TC~ 170 (212)
.+---+|.++..-..|+
T Consensus 148 ~~ak~vs~aL~~~v~cL 164 (168)
T 2l7n_A 148 QVAKAVTQALNRCVSCL 164 (168)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45555777774444443
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=17.82 E-value=2.3e+02 Score=18.90 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLKQMR 136 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~al~ 136 (212)
..+..+..|+..|.+-|-++-..+.+....+.
T Consensus 40 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~ 71 (89)
T 2bsk_A 40 EVKPEETTCSEHCLQKYLKMTQRISMRFQEYH 71 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999888777665
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=17.13 E-value=1.9e+02 Score=19.73 Aligned_cols=32 Identities=9% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLKQMR 136 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~al~ 136 (212)
..+..+..|+..|.+-|-++-..+.+....+.
T Consensus 55 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 55 ELNKNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999998887776544
No 9
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=15.72 E-value=75 Score=17.28 Aligned_cols=12 Identities=42% Similarity=0.955 Sum_probs=7.7
Q ss_pred hhhHHHHHHHhh
Q 028183 152 MSNVQTWMSAAL 163 (212)
Q Consensus 152 ~~dv~twLSAAl 163 (212)
..|.++||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 566677776654
No 10
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=15.53 E-value=2.7e+02 Score=18.57 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028183 105 GSDQRAAAALHDCFSNFGDAVEEIYGSLKQMR 136 (212)
Q Consensus 105 ~~~~~~~~al~dC~ely~~a~d~L~~a~~al~ 136 (212)
..+..+..|+..|.+-|-++-..+......+.
T Consensus 49 ~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 80 (89)
T 3dxr_A 49 KLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 80 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999988887666543
Done!