BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028184
         (212 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)

Query: 116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN 175
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG GGRF +
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 60

Query: 176 SKKNEN 181
            K+ ++
Sbjct: 61  PKEKDS 66


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFL 174
           +E P++VNAKQ+H IL+RR +R K E + ++  K RKPYLHESRH HA+RR RG GGRFL
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60

Query: 175 NS 176
            +
Sbjct: 61  TA 62


>pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric
           Fact Complex (Spt16p-Pob3p)
          Length = 191

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 148 KSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNL 198
           ++RKP+L  +  L  ++ +RGC G  L  K N   Q  +  D  SQ + NL
Sbjct: 61  QARKPFLLPATELSTVQWSRGCRGYDL--KINTKNQGVIQLDGFSQDDYNL 109


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 132 RRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 176
           ++  +++  E    VL+  + YLHE+R    +  AR  GG  + S
Sbjct: 57  QKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKS 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.125    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,938,229
Number of Sequences: 62578
Number of extensions: 157631
Number of successful extensions: 255
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 4
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)