Query 028184
Match_columns 212
No_of_seqs 142 out of 205
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 12:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.2E-38 4E-43 231.3 5.5 62 117-178 2-64 (64)
2 1b9w_A Protein (merozoite surf 14.9 26 0.00089 26.9 -0.7 19 62-80 70-89 (95)
3 3hde_A Lysozyme; antimicrobial 10.7 1.2E+02 0.0042 23.9 2.1 25 118-142 137-161 (165)
4 2anv_A Lysozyme; direct method 10.7 91 0.0031 23.8 1.2 21 119-140 123-143 (146)
5 1xju_A Lysozyme; secreted inac 10.1 1.3E+02 0.0046 23.5 2.1 26 118-143 127-152 (163)
6 1xjt_A Lysozyme; open conforma 8.0 1.8E+02 0.0062 23.6 2.1 26 118-143 155-180 (191)
7 2k2w_A Recombination and DNA r 7.8 1.1E+02 0.0038 24.0 0.7 13 117-129 17-29 (118)
8 2xc7_A Phosphorylated adapter 7.4 41 0.0014 25.7 -1.9 17 163-179 60-76 (104)
9 3q12_A Pantoate--beta-alanine 7.3 1.1E+02 0.0037 27.1 0.4 11 118-128 56-66 (287)
10 3mxt_A Pantothenate synthetase 7.2 1.1E+02 0.0038 27.0 0.4 11 118-128 55-65 (285)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.2e-38 Score=231.27 Aligned_cols=62 Identities=60% Similarity=1.007 Sum_probs=58.6
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hcCCCcccchhhHHHhhccCCCCCccccccc
Q 028184 117 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK 178 (212)
Q Consensus 117 eePiyVNaKQY~rIlrRRq~Rakle~~~kl~-k~rkpYlHESRH~HAm~R~Rg~gGRFL~~k~ 178 (212)
|+|||||||||++|||||++|+|+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999875
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=14.95 E-value=26 Score=26.93 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=16.0
Q ss_pred cccc-cCCCCCCcccccccc
Q 028184 62 MAPA-AYPYPDPYYRSIFAP 80 (212)
Q Consensus 62 ~a~~-~yPY~Dpyygg~~a~ 80 (212)
|+|. ..||+.|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 5666 899999999999964
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.73 E-value=1.2e+02 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.2
Q ss_pred CceeechhhhHHHHHHHHHHHHHHH
Q 028184 118 EPVFVNAKQYHGILRRRQSRAKAES 142 (212)
Q Consensus 118 ePiyVNaKQY~rIlrRRq~Rakle~ 142 (212)
.-+|++-|-..++.+||++...|=.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3456677888999999998877643
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=10.70 E-value=91 Score=23.82 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.4
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 028184 119 PVFVNAKQYHGILRRRQSRAKA 140 (212)
Q Consensus 119 PiyVNaKQY~rIlrRRq~Rakl 140 (212)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566677 88999999987765
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=10.12 E-value=1.3e+02 Score=23.50 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.4
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHh
Q 028184 118 EPVFVNAKQYHGILRRRQSRAKAESE 143 (212)
Q Consensus 118 ePiyVNaKQY~rIlrRRq~Rakle~~ 143 (212)
.-+|++-|...++.+||++.+.|=..
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~ 152 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLT 152 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhC
Confidence 35667778899999999998877654
No 6
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.99 E-value=1.8e+02 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.4
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHh
Q 028184 118 EPVFVNAKQYHGILRRRQSRAKAESE 143 (212)
Q Consensus 118 ePiyVNaKQY~rIlrRRq~Rakle~~ 143 (212)
.-+|++-|...++.+||++.+.|=..
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~ 180 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLT 180 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHB
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhC
Confidence 45666778899999999998877654
No 7
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=7.78 E-value=1.1e+02 Score=24.02 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=10.7
Q ss_pred CCceeechhhhHH
Q 028184 117 EEPVFVNAKQYHG 129 (212)
Q Consensus 117 eePiyVNaKQY~r 129 (212)
..=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 4678999999975
No 8
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=7.40 E-value=41 Score=25.73 Aligned_cols=17 Identities=53% Similarity=0.565 Sum_probs=13.6
Q ss_pred hhccCCCCCccccccch
Q 028184 163 LRRARGCGGRFLNSKKN 179 (212)
Q Consensus 163 m~R~Rg~gGRFL~~k~~ 179 (212)
-.|.|-+||-||+-=+.
T Consensus 60 G~RrRTpGGVF~~LlK~ 76 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLLKN 76 (104)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCcCCCCchhHHHHHhc
Confidence 36899999999976554
No 9
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=7.31 E-value=1.1e+02 Score=27.09 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.8
Q ss_pred CceeechhhhH
Q 028184 118 EPVFVNAKQYH 128 (212)
Q Consensus 118 ePiyVNaKQY~ 128 (212)
--|||||-||.
T Consensus 56 VSIFVNP~QF~ 66 (287)
T 3q12_A 56 VTIFVNPLQFE 66 (287)
T ss_dssp EEECCCGGGCS
T ss_pred EEeccCcccCC
Confidence 46999999953
No 10
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=7.17 E-value=1.1e+02 Score=27.04 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 028184 118 EPVFVNAKQYH 128 (212)
Q Consensus 118 ePiyVNaKQY~ 128 (212)
--|||||-||.
T Consensus 55 VSIFVNP~QF~ 65 (285)
T 3mxt_A 55 VSIFVNPMQFG 65 (285)
T ss_dssp EEECCCGGGCC
T ss_pred EEeccCccccC
Confidence 57999999943
Done!