Query 028184
Match_columns 212
No_of_seqs 142 out of 205
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 12:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028184.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028184hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 13.3 20 0.0015 28.9 0.2 10 118-127 48-57 (276)
2 d1ob1c2 g.3.11.4 (C:46-96) Mer 10.5 38 0.0028 21.9 0.8 22 60-81 27-49 (51)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 10.3 29 0.0021 28.1 0.2 11 118-128 53-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 8.7 32 0.0023 27.9 -0.2 12 118-129 62-73 (286)
5 d1xjua_ d.2.1.3 (A:) Endolysin 6.0 1.3E+02 0.0094 20.9 2.1 25 121-145 130-154 (158)
6 d1z60a1 g.49.1.2 (A:328-386) T 4.5 81 0.0059 20.6 0.0 7 153-159 47-53 (59)
7 d1a8ya1 c.47.1.3 (A:3-126) Cal 4.4 2.9E+02 0.021 17.7 2.9 23 110-132 3-26 (124)
8 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.0 3.6E+02 0.026 18.9 3.4 22 124-145 135-156 (164)
9 d1e0na_ b.72.1.1 (A:) Hypothet 3.8 1.3E+02 0.0095 17.0 0.6 10 117-126 10-19 (27)
10 d2huja1 a.24.26.1 (A:1-120) Hy 3.8 3.5E+02 0.026 19.1 3.2 41 121-161 34-74 (120)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=13.26 E-value=20 Score=28.92 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=8.0
Q ss_pred Cceeechhhh
Q 028184 118 EPVFVNAKQY 127 (212)
Q Consensus 118 ePiyVNaKQY 127 (212)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 4689999984
No 2
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=10.49 E-value=38 Score=21.88 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.4
Q ss_pred cccccc-cCCCCCCccccccccC
Q 028184 60 HAMAPA-AYPYPDPYYRSIFAPY 81 (212)
Q Consensus 60 ~s~a~~-~yPY~Dpyygg~~a~Y 81 (212)
--|+|. .-|-+.|||.|+|-.|
T Consensus 27 kkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 27 KKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCCEEEECSTTCCEEGGGTEECC
T ss_pred ceEEEEecCCCCCcccceEEeec
Confidence 346766 7788899999999775
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=10.34 E-value=29 Score=28.09 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 028184 118 EPVFVNAKQYH 128 (212)
Q Consensus 118 ePiyVNaKQY~ 128 (212)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 46999998864
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.74 E-value=32 Score=27.87 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.7
Q ss_pred CceeechhhhHH
Q 028184 118 EPVFVNAKQYHG 129 (212)
Q Consensus 118 ePiyVNaKQY~r 129 (212)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 578999999754
No 5
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.95 E-value=1.3e+02 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=18.1
Q ss_pred eechhhhHHHHHHHHHHHHHHHhhh
Q 028184 121 FVNAKQYHGILRRRQSRAKAESENK 145 (212)
Q Consensus 121 yVNaKQY~rIlrRRq~Rakle~~~k 145 (212)
+.+-|-..++.+||++.+.|=.++.
T Consensus 130 ~~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 130 NSNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp EETTEECHHHHHHHHHHHHHHHTTT
T ss_pred hcCCEEChhHHHHHHHHHHHHHccc
Confidence 3344557899999999888766554
No 6
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=81 Score=20.57 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.2
Q ss_pred cccchhh
Q 028184 153 YLHESRH 159 (212)
Q Consensus 153 YlHESRH 159 (212)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 3455444
No 7
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.38 E-value=2.9e+02 Score=17.71 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=15.4
Q ss_pred CCCCC-CCCCceeechhhhHHHHH
Q 028184 110 PLPTD-AVEEPVFVNAKQYHGILR 132 (212)
Q Consensus 110 pLp~~-~~eePiyVNaKQY~rIlr 132 (212)
.+|.- ..+.-|-+|.+.|..+|+
T Consensus 3 ~~p~~d~~~~V~~L~~~nf~~~l~ 26 (124)
T d1a8ya1 3 DFPEYDGVDRVINVNAKNYKNVFK 26 (124)
T ss_dssp CCCCCCCCCCCEECCTTTHHHHHH
T ss_pred CCCccCCCCccEECCHHHHHHHHH
Confidence 44532 334667889999988874
No 8
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=3.96 E-value=3.6e+02 Score=18.86 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 028184 124 AKQYHGILRRRQSRAKAESENK 145 (212)
Q Consensus 124 aKQY~rIlrRRq~Rakle~~~k 145 (212)
.+.|..-.+|++.|...+.+.+
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~ 156 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESK 156 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777776666554
No 9
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.83 E-value=1.3e+02 Score=16.96 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=7.8
Q ss_pred CCceeechhh
Q 028184 117 EEPVFVNAKQ 126 (212)
Q Consensus 117 eePiyVNaKQ 126 (212)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 3799999864
No 10
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=3.81 E-value=3.5e+02 Score=19.13 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=23.7
Q ss_pred eechhhhHHHHHHHHHHHHHHHhhhhhhcCCCcccchhhHH
Q 028184 121 FVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLH 161 (212)
Q Consensus 121 yVNaKQY~rIlrRRq~Rakle~~~kl~k~rkpYlHESRH~H 161 (212)
|-.-|=|-..+.....+-+..+..-+...|-+|||++-=..
T Consensus 34 y~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~ 74 (120)
T d2huja1 34 YKDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQ 74 (120)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 33444455555555555444444344458999999875433
Done!