BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028185
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
pdb|1WSC|B Chain B, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
Length = 230
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 47 GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 105
G LRGCIG +EA L A+ +A D RFPP+ E ++ V++LT +
Sbjct: 66 GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 106 ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKA 159
+ WE VG GLI+ EY S LP+V W + + KA
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQVPXEYCWDEETFLAETCIKA 180
Query: 160 GFSGPITESLRKRIRLTRYQSTLF 183
G L ++++ ++Q +F
Sbjct: 181 GLEPDCW--LNNKVKIKKFQGIIF 202
>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From
Pyrococcus Horikoshii
Length = 214
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 23 EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRR 81
+D PP +++ +FVT + + LRGCIG L+ A+ SA+ D R
Sbjct: 35 KDTPPELWEKXG--VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92
Query: 82 FPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSATY 136
FPP++ E +L VS+LT E + +VG GLI+E S
Sbjct: 93 FPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLL 146
Query: 137 LPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 187
LP+V GW + E + KAG P L + ++ ++ + +F Y
Sbjct: 147 LPQVPVEWGWDEEEFLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEY 195
>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|B Chain B, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|C Chain C, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|D Chain D, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9
Length = 207
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 28 PAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQ 86
P F+E + +FVT + GG LRGCIG L D A+++A +D RFP ++
Sbjct: 39 PVFEEYRG-VFVT---LTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVE 92
Query: 87 ARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIEFTDPEYSTRRSATYLPEVA 141
E ++ V+ILT E N E+G HGLI++ LP+VA
Sbjct: 93 QDEXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK------QGYCQGLLLPQVA 146
Query: 142 AHEGWTKVEAIDSLMRKAGFS 162
++ + KAG S
Sbjct: 147 PENDXDSIDFLSHTCXKAGLS 167
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 24 DAPPPAFD-EGQH-PLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
+ PPA D +G+H + ++K+V GG P LR C +L R L+
Sbjct: 404 NGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCT-SLTVRGLV 446
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 31 DEGQHPLFVTWKKVVNGGEPR---LRGCIGTLEARCLINGFKDYALTSALK----DRRFP 83
DE HP+ + K+ G+ R L GC+ L+ CL + F +Y +A K D+RF
Sbjct: 89 DEKNHPVLIHCKR----GKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFX 144
Query: 84 PI 85
I
Sbjct: 145 EI 146
>pdb|2ZFW|A Chain A, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|B Chain B, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|D Chain D, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|E Chain E, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
Length = 148
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 30 FDEGQHPLFVTWKKVVNGGEPRLRGCIGTL---EARCLINGFKDYALTSALKDRRFPPIQ 86
F E + + WKKV G PR + +R L ++ Y +SA DR+ P++
Sbjct: 87 FLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVE 146
Query: 87 AR 88
AR
Sbjct: 147 AR 148
>pdb|2E1N|A Chain A, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
pdb|2E1N|B Chain B, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
Length = 138
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 30 FDEGQHPLFVTWKKVVNGGEPRLRGCIGTL---EARCLINGFKDYALTSALKDRRFPPIQ 86
F E + + WKKV G PR + +R L ++ Y +SA DR+ P++
Sbjct: 77 FLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVE 136
Query: 87 AR 88
AR
Sbjct: 137 AR 138
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 107 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 133
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 107 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 133
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,644,074
Number of Sequences: 62578
Number of extensions: 264712
Number of successful extensions: 588
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)