Query 028185
Match_columns 212
No_of_seqs 127 out of 642
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3274 Uncharacterized conser 100.0 1.3E-62 2.8E-67 410.9 14.1 195 1-199 10-206 (210)
2 PF01871 AMMECR1: AMMECR1; In 100.0 6.2E-60 1.3E-64 393.5 16.2 164 8-185 1-171 (171)
3 TIGR00296 uncharacterized prot 100.0 6.7E-58 1.4E-62 389.7 18.1 170 5-188 9-193 (200)
4 PRK00801 hypothetical protein; 100.0 2.8E-57 6.1E-62 386.1 18.0 168 6-187 10-188 (201)
5 COG2078 AMMECR1 Uncharacterize 100.0 5.1E-54 1.1E-58 363.7 17.5 174 6-189 11-194 (203)
6 PRK03881 hypothetical protein; 100.0 1.4E-46 3E-51 353.8 17.7 161 5-184 299-467 (467)
7 PF00853 Runt: Runt domain; I 48.8 14 0.00029 30.0 2.1 75 32-118 49-125 (135)
8 KOG3982 Runt and related trans 39.0 42 0.00091 32.0 4.0 76 32-119 146-223 (475)
9 cd01760 RBD Ubiquitin-like dom 34.8 41 0.00089 24.3 2.6 24 140-163 14-37 (72)
10 COG1154 Dxs Deoxyxylulose-5-ph 33.6 38 0.00083 34.0 3.0 57 33-93 490-549 (627)
11 PF08381 BRX: Transcription fa 30.2 42 0.00092 23.6 2.0 19 34-53 11-29 (59)
12 TIGR02396 diverge_rpsU rpsU-di 25.7 52 0.0011 27.6 2.2 27 136-164 8-34 (184)
13 cd01817 RGS12_RBD Ubiquitin do 24.9 86 0.0019 23.0 2.9 24 140-163 14-37 (73)
14 KOG1546 Metacaspase involved i 23.2 41 0.00088 31.6 1.1 26 32-59 62-87 (362)
15 PF03889 DUF331: Domain of unk 22.7 37 0.0008 22.0 0.5 17 68-84 3-19 (39)
16 PF03681 UPF0150: Uncharacteri 21.8 2E+02 0.0042 18.3 3.9 28 130-158 12-41 (48)
17 COG3044 Predicted ATPase of th 20.6 1.1E+02 0.0024 30.0 3.4 59 62-125 66-127 (554)
18 KOG1612 Exosomal 3'-5' exoribo 20.4 1.1E+02 0.0024 27.8 3.2 52 39-99 131-182 (288)
19 TIGR02520 pilus_B_mal_scr type 20.3 2E+02 0.0044 27.8 5.3 41 147-190 124-164 (497)
20 PF11235 Med25_SD1: Mediator c 20.2 1.1E+02 0.0023 25.7 2.9 25 65-89 57-86 (168)
No 1
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=100.00 E-value=1.3e-62 Score=410.94 Aligned_cols=195 Identities=62% Similarity=1.089 Sum_probs=184.6
Q ss_pred CCccchHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCceEEEEEEeccCCCCcceeeecccCcccHHHHHHHHHHHhhhc
Q 028185 1 MVSANREMAVYCFDTLVAHYNSEDAP--PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALK 78 (212)
Q Consensus 1 ~~~~~~~~~~~Ar~aI~~~L~~~~~~--~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~ 78 (212)
|.+++.+||.|||++|.++|++.+.| ++.+.+...++||||++ |.+.+||||||||+++||+.++.+||+.|||+
T Consensus 10 ~~~~~~~ma~ycF~vl~~~ln~~k~p~~~~~~~~~~~PLFvtwk~---g~dkrLRGCIGTFsam~L~~Gl~eYaltsAl~ 86 (210)
T KOG3274|consen 10 MTSANSEMAVYCFDVLYAHLNNEKSPSLPPDFRNRLYPLFVTWKK---GHDKRLRGCIGTFSAMPLHSGLREYALTSALK 86 (210)
T ss_pred ccccCcceEEEehhhhhhhhccccCCCcchhhhccCcceeEEecc---CCCcccccceeehhhcchhhhHHHHHHHHHhh
Confidence 67799999999999999999998887 56677999999999996 34478999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHHHH
Q 028185 79 DRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRK 158 (212)
Q Consensus 79 DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~~K 158 (212)
|.||+||+.+||++|.|+||+|++||++.|++||++|+|||.|+|.+ ..|..++|||||+||.|||||++|++++|++|
T Consensus 87 DsRF~PIsr~ELp~L~CsvslL~nFE~i~d~lDWevG~HGIrieF~~-e~g~krsATyLPeVa~EQgWd~~eTidsLirK 165 (210)
T KOG3274|consen 87 DSRFPPISREELPSLQCSVSLLTNFEDIFDYLDWEVGVHGIRIEFTN-ETGTKRSATYLPEVAAEQGWDQIETIDSLIRK 165 (210)
T ss_pred cccCCCCChhhcCceEEEEEeeccchhcccccceeeccceEEEEEEc-CCCcEeeeeecccchhhcCCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988 34789999999999999999999999999999
Q ss_pred cCCCCCCcccccCcEEEEEEEEEEEEeeHHHHHHHHHhhcC
Q 028185 159 AGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRG 199 (212)
Q Consensus 159 AG~~~~~~~~~~~~i~v~ry~~~~~~~~~~~y~~~~~~~~~ 199 (212)
|||.+.|++.+++.|+++||++++++++|+||++.++++..
T Consensus 166 aGY~g~It~~~r~~I~ltRY~S~k~~~~Y~EY~~~~q~~~~ 206 (210)
T KOG3274|consen 166 AGYKGPITEELRKSIKLTRYRSEKISITYEEYLAYLQHHGA 206 (210)
T ss_pred cCCCCccCHHHHhheeeeEeeceeeeeeHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999754
No 2
>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities. It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.
Probab=100.00 E-value=6.2e-60 Score=393.51 Aligned_cols=164 Identities=37% Similarity=0.636 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhcCCCCC--CCC---CCCCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCC
Q 028185 8 MAVYCFDTLVAHYNSEDAP--PPA---FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR 81 (212)
Q Consensus 8 ~~~~Ar~aI~~~L~~~~~~--~~~---~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~DpR 81 (212)
||.+||++|.++|++++.. ++. ...+++||||||++ + |+|||||||++| +||.++|++||++|||+|||
T Consensus 1 Ll~~Ar~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpR 75 (171)
T PF01871_consen 1 LLRLAREAIESYLRGGPLPPPPPPLPPELSEPRGVFVTLKK----D-GELRGCIGTFEPVRPLAEDVIENAIAAAFEDPR 75 (171)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCT--GGGGSBEEEEEEEEE----C-CCEEEEEEESSSESBHHHHHHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCChhhcCceeEEEEEEE----C-CEEEEEeccCCcchhHHHHHHHHHHHHhhCCCC
Confidence 7999999999999988742 111 12679999999999 6 999999999999 99999999999999999999
Q ss_pred CCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHHHHcCC
Q 028185 82 FPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGF 161 (212)
Q Consensus 82 F~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~~KAG~ 161 (212)
|+||+++||++|.|+||||++|+++.++.+|+||+|||+|++ ++++||||||||.||+||+++||++||+|||+
T Consensus 76 F~Pl~~~El~~l~ieVSvL~~~~~i~~~~~~~~g~~Glil~~------~~~~~~~LPqVa~E~~w~~~~fl~~l~~KAG~ 149 (171)
T PF01871_consen 76 FPPLTPSELPELSIEVSVLSPPEPISDPEDWEPGRHGLILEF------GGYRGTFLPQVAWEQGWDPEEFLRHLCRKAGL 149 (171)
T ss_dssp S----GGGGGGEEEEEEEE---EE--GGGG--TTT-EEEEEE------TTEEEEE-THHHHHTT--HHHHHHHHHHHTTS
T ss_pred CCCCCHHHHcccEEEEEeccCcEEcCCHHHcccCcceeEEEe------cCcceEECCCchhhcCCCHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCCcccc-cCcEEEEEEEEEEEEe
Q 028185 162 SGPITESL-RKRIRLTRYQSTLFAL 185 (212)
Q Consensus 162 ~~~~~~~~-~~~i~v~ry~~~~~~~ 185 (212)
+. +.| .++++++||++++|+|
T Consensus 150 ~~---~~w~~~~~~~~rf~~~~f~E 171 (171)
T PF01871_consen 150 PP---DAWKSPDIKLYRFQAEVFSE 171 (171)
T ss_dssp -T---TCCCTTTSEEEEE-EEEEEE
T ss_pred Cc---cccccCCeEEEEEEEEEEeC
Confidence 97 344 6799999999999986
No 3
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=100.00 E-value=6.7e-58 Score=389.69 Aligned_cols=170 Identities=34% Similarity=0.564 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEeccCCCCc--ceeeecccCc-ccHHHHHHHHHHHhh
Q 028185 5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPR--LRGCIGTLEA-RCLINGFKDYALTSA 76 (212)
Q Consensus 5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~~~---~~~~g~FVTl~~~~~~~~~~--LRGCIGt~~p-~pL~~~i~~~A~~AA 76 (212)
.+.||.+||++|.++|++++.+ +++++ ++++||||||++ + |+ |||||||+.| +||+++|++||++||
T Consensus 9 ~~~l~~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~~----~-~~~~LRGCIGs~~p~~pL~~~v~~~A~~AA 83 (200)
T TIGR00296 9 GSSAVRYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLKK----K-GNKHLRGCIGTPEPVMPLIEAIEEAAISAA 83 (200)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEEE----C-CCcCCCcccccCCCcccHHHHHHHHHHHHH
Confidence 4569999999999999876632 33454 789999999998 3 56 9999999999 999999999999999
Q ss_pred hcCCCCCCCCcCCCCCeeEEEEeccCcccc------CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185 77 LKDRRFPPIQARELPSLECTVSILTDFETA------NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE 150 (212)
Q Consensus 77 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~------~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~ 150 (212)
|+||||+||+++||++|.|+||||++++++ +++.+|+||+|||+|++ +.++||||||||.||+||+++
T Consensus 84 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~i~~~~~~~~~~~~~~G~hGlii~~------g~~~gt~LPqVa~E~~wd~~~ 157 (200)
T TIGR00296 84 TEDPRFPPVQLEELDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEF------GPKRGLLLPQVAVEYGWDAEE 157 (200)
T ss_pred cCCCCCCCCChHHhCCcEEEEEeCCCCEEcccCCccccHHHcccccceEEEEE------CCccEEECCccHhhcCCCHHH
Confidence 999999999999999999999999999998 35678999999999999 789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccC-cEEEEEEEEEEEEeeHH
Q 028185 151 AIDSLMRKAGFSGPITESLRK-RIRLTRYQSTLFALHYS 188 (212)
Q Consensus 151 ~l~~l~~KAG~~~~~~~~~~~-~i~v~ry~~~~~~~~~~ 188 (212)
||.+||+||||++ +.|.+ +++|+||++++|++...
T Consensus 158 fl~~l~~KAGl~~---d~w~~~~~~v~rf~~~~f~E~~~ 193 (200)
T TIGR00296 158 FLANLCMKAGLPP---DCFLTYGIEVYRFEGQIFEEFEP 193 (200)
T ss_pred HHHHHHHhCCCCc---cccccCCcEEEEEEEEEEEecCC
Confidence 9999999999998 45554 79999999999997643
No 4
>PRK00801 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-57 Score=386.09 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCC--CCCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcC
Q 028185 6 REMAVYCFDTLVAHYNSEDAPP--PAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKD 79 (212)
Q Consensus 6 ~~~~~~Ar~aI~~~L~~~~~~~--~~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~D 79 (212)
+.|+.+||++|.++|.+++.++ ..++ .+++||||||++ + |+|||||||+.| +||+++|++||++|||+|
T Consensus 10 ~~Ll~lAR~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~D 84 (201)
T PRK00801 10 EFAVRLARRAIEEYLRTGKVIEPPKDLPPVFWEKRGVFVTLNK----H-GVLRGCIGFPYPDSPLVEAIIDSAISAATRD 84 (201)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCccCCHhHcccccEEEEEEE----C-CeeccccCCCCCcccHHHHHHHHHHHHHcCC
Confidence 5699999999999998766542 2333 679999999998 5 899999999999 999999999999999999
Q ss_pred CCCCCCCcCCCCCeeEEEEeccCccccCC-----ccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHH
Q 028185 80 RRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDS 154 (212)
Q Consensus 80 pRF~Pl~~~EL~~l~ieVSvL~~~e~~~d-----~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~ 154 (212)
|||+||+++||++|.|+||||++++++++ +.+|+||+|||+|++ +.++||||||||.||+|++++||.+
T Consensus 85 pRF~Pl~~~EL~~l~ieVSvLs~~e~i~~~~~~l~~~~~~G~~Glii~~------g~~~g~~LPqV~~e~~wd~~efl~~ 158 (201)
T PRK00801 85 PRFPPVKLEEMDEITVEVTVLTPPELIEGPPEELPEKIEVGRHGLIVKK------GIYSGLLLPQVAPEWGFDSEEFLSH 158 (201)
T ss_pred CCCCCCChHHhCCcEEEEEEcCCCEEccCcchhhHHhccccceEEEEEe------CCccEEECCcchhhcCCCHHHHHHH
Confidence 99999999999999999999999999975 678999999999999 8899999999999999999999999
Q ss_pred HHHHcCCCCCCcccccCcEEEEEEEEEEEEeeH
Q 028185 155 LMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 187 (212)
Q Consensus 155 l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~ 187 (212)
||+||||+. +.|.++++++||++++|++.-
T Consensus 159 l~~KAGl~~---d~w~~~~~v~rf~~~~f~E~~ 188 (201)
T PRK00801 159 TCLKAGLPP---DCWLDDAEVYRFEGQIFKEEE 188 (201)
T ss_pred HHHhcCCCc---cccccCcEEEEEEEEEEEccC
Confidence 999999997 566679999999999999864
No 5
>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-54 Score=363.67 Aligned_cols=174 Identities=30% Similarity=0.466 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCC-CC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCC
Q 028185 6 REMAVYCFDTLVAHYNSEDAPPPA-FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR 80 (212)
Q Consensus 6 ~~~~~~Ar~aI~~~L~~~~~~~~~-~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~Dp 80 (212)
..+|.|||.+|.++|++++.+.+. ++ +++.|+||||++.+ ++ ++||||||++.| .+|.++|+++|+.||++||
T Consensus 11 ~~~V~lAR~ai~~~L~~gk~~~~~~~~~~~~~k~gvFvTl~~~~-~~-~~LRGCIG~~~p~~~l~~ai~~~Ai~AA~~DP 88 (203)
T COG2078 11 HPLVRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYS-PD-GELRGCIGTPEPVKPLAEAIIKAAIEAALSDP 88 (203)
T ss_pred hHHHHHHHHHHHHHhccCCcCCCcccchhhhhccceEEEEEEeC-CC-CceeeecccCcccCcHHHHHHHHHHHHHhcCC
Confidence 579999999999999998876333 22 78999999999965 23 799999999999 8999999999999999999
Q ss_pred CCCCCCcCCCCCeeEEEEeccCccccCCc-----cCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHH
Q 028185 81 RFPPIQARELPSLECTVSILTDFETANNY-----LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 155 (212)
Q Consensus 81 RF~Pl~~~EL~~l~ieVSvL~~~e~~~d~-----~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l 155 (212)
||+||+++||+++.||||+|++|+++.+. .+|++|+|||||.+ |.++|+|||||++|++||+++||+++
T Consensus 89 RF~pv~~~EL~~i~veV~iLt~pe~i~~~p~~~p~~ie~G~~Gliv~~------g~~sgllLPqV~vE~~w~~eefL~~~ 162 (203)
T COG2078 89 RFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGLIVEK------GIYSGLLLPQVPVEYRWDVEEFLEHT 162 (203)
T ss_pred CCCCCChhHhcceEEEEEEcCCCeecCCCchhChhheeecceEEEEec------CCcceeecCccccccCCCHHHHHHHH
Confidence 99999999999999999999999998754 78999999999999 88999999999999999999999999
Q ss_pred HHHcCCCCCCcccccCcEEEEEEEEEEEEeeHHH
Q 028185 156 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSD 189 (212)
Q Consensus 156 ~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~~~ 189 (212)
|.||||+++ +|..+++++++|++++|+++..+
T Consensus 163 c~KAGlp~~--~w~~~~~~iy~F~~~If~E~~p~ 194 (203)
T COG2078 163 CEKAGLPGD--CWLDEDVKIYRFEAQIFKEKEPE 194 (203)
T ss_pred HHHcCCCcc--cccccCceEEEEEEEEEEecCCC
Confidence 999999985 34566999999999999997643
No 6
>PRK03881 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=353.83 Aligned_cols=161 Identities=25% Similarity=0.398 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCC--CCC----CCCCCCceEEEEEEeccCCCCcceeeecccCc-c-cHHHHHHHHHHHhh
Q 028185 5 NREMAVYCFDTLVAHYNSEDAP--PPA----FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-R-CLINGFKDYALTSA 76 (212)
Q Consensus 5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~----~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~-pL~~~i~~~A~~AA 76 (212)
.+.++++||++|.++|++++.+ +++ +.+.++||||||++ + |+|||||||++| . ||.++|++||++||
T Consensus 299 ~~~l~~lAr~~i~~~l~~~~~~~~~~~~~~~~~~~~~g~FVTl~~----~-g~LRGCIG~~~p~~~~L~~~v~~~a~~AA 373 (467)
T PRK03881 299 EDPYVRLARESLESYVKTGKPLPVPDYLPEEMLNRRAGVFVSLKK----D-GELRGCIGTIFPTRENIAEEIIRNAISAG 373 (467)
T ss_pred hhHHHHHHHHHHHHHhCcCCCCCCCccCChHHhCCcccEEEEEEE----C-CeeeeeeeecCCCcchHHHHHHHHHHHHh
Confidence 5679999999999999876543 222 23689999999998 5 899999999999 4 89999999999999
Q ss_pred hcCCCCCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHH
Q 028185 77 LKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLM 156 (212)
Q Consensus 77 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~ 156 (212)
|+||||+||+++||++|.||||||+++|+++++.+|+||+|||+|++ +.++||||||| ++-+++++||+++|
T Consensus 374 ~~DpRF~pl~~~El~~l~i~VsvL~~~~~~~~~~~~~~g~~Gli~~~------~~~~g~~LP~v--~~~~~~~~fl~~~~ 445 (467)
T PRK03881 374 TEDPRFPPVEEDELDDLVYSVDVLTEPEPVSSLDELDPKRYGVIVRS------GRRRGLLLPDL--EGVDTVEEQLSIAL 445 (467)
T ss_pred cCCCCCCCCChHHhCCeEEEEEEcCCCeECCCHHHcCCccceEEEEE------CCccEEECCCC--CCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999 43335699999999
Q ss_pred HHcCCCCCCcccccCcEEEEEEEEEEEE
Q 028185 157 RKAGFSGPITESLRKRIRLTRYQSTLFA 184 (212)
Q Consensus 157 ~KAG~~~~~~~~~~~~i~v~ry~~~~~~ 184 (212)
+|||++++ ++++++||++++|.
T Consensus 446 ~KaGl~~~------~~~~~~~f~~~~~~ 467 (467)
T PRK03881 446 RKAGIDPD------EDVEIERFEVVRHK 467 (467)
T ss_pred HhcCCCCC------CCeEEEEEEEEEeC
Confidence 99999984 24999999999873
No 7
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=48.82 E-value=14 Score=30.02 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCCCceEEEEEEeccCC-CCcceeeecccCcccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEeccCccccCCcc
Q 028185 32 EGQHPLFVTWKKVVNGG-EPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYL 110 (212)
Q Consensus 32 ~~~~g~FVTl~~~~~~~-~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~ 110 (212)
+-+-|.-||+.--++++ ..+||.|.-....+ .|-|+|=||-.-+-. =++..+.|+|.+.|-.+..+.
T Consensus 49 ~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq-----------vA~FnDLRFvGRSGR-GKsFtltItv~t~PpqvAty~ 116 (135)
T PF00853_consen 49 DVPDGTLVTVMAGNDENYCAELRNATAVMKNQ-----------VARFNDLRFVGRSGR-GKSFTLTITVFTNPPQVATYH 116 (135)
T ss_dssp S-STTEEEEEEEEESSCSSBBEES-EEEEETT-----------EEEESS-EECST-TT-TSEEEEEEEE-SSS-EEEEEC
T ss_pred EcCCCcEEEEEecCCchhhhhhhchhhhhhcc-----------cccccccccccccCC-ccceEEEEEEeCCCchHHhhe
Confidence 67889999999743321 27899998766542 245999999774443 467999999999988877653
Q ss_pred -CCccccee
Q 028185 111 -DWEVGTHG 118 (212)
Q Consensus 111 -d~~~G~hG 118 (212)
.+.+-.||
T Consensus 117 ~AIKVTVDG 125 (135)
T PF00853_consen 117 RAIKVTVDG 125 (135)
T ss_dssp CEEEEESS-
T ss_pred eeEEEEecC
Confidence 45555555
No 8
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=38.99 E-value=42 Score=32.01 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCCCceEEEEEEeccCC-CCcceeeecccCcccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEeccCccccCCcc
Q 028185 32 EGQHPLFVTWKKVVNGG-EPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYL 110 (212)
Q Consensus 32 ~~~~g~FVTl~~~~~~~-~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~ 110 (212)
+.+-|.-||+.--.+++ -++||-|- ++.++-+ |-|+|=||---+ --=.+..+.|+|.+.+-.+..+.
T Consensus 146 dVpDgT~Vti~aGNDEnyc~ElRN~t----------A~mknQV-AkFNDLRFVGRS-GRGKsFtLTIti~TnP~qvATy~ 213 (475)
T KOG3982|consen 146 DVPDGTLVTIMAGNDENYCAELRNCT----------AVMKNQV-AKFNDLRFVGRS-GRGKSFTLTITIFTNPPQVATYH 213 (475)
T ss_pred ccCCCcEEEEEecCCcchhHHhhhhH----------HHHHhhh-hhhccceeeccc-CCCcceEEEEEEecCCcceeeee
Confidence 56788889988722211 16788884 3555544 469999995433 23466899999999999988774
Q ss_pred -CCcccceeE
Q 028185 111 -DWEVGTHGL 119 (212)
Q Consensus 111 -d~~~G~hGl 119 (212)
.++|-+||=
T Consensus 214 kaIKVTVDGP 223 (475)
T KOG3982|consen 214 KAIKVTVDGP 223 (475)
T ss_pred ceEEEeccCC
Confidence 477777774
No 9
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=34.76 E-value=41 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred hhhccCCCHHHHHHHHHHHcCCCC
Q 028185 140 VAAHEGWTKVEAIDSLMRKAGFSG 163 (212)
Q Consensus 140 Va~E~~w~~~~~l~~l~~KAG~~~ 163 (212)
|....|.|-.+.|+.+|+|-|+.+
T Consensus 14 V~vrpg~ti~d~L~~~c~kr~l~~ 37 (72)
T cd01760 14 VPVRPGMSVRDVLAKACKKRGLNP 37 (72)
T ss_pred EEECCCCCHHHHHHHHHHHcCCCH
Confidence 445667899999999999999996
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=33.61 E-value=38 Score=34.04 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCceEEEEEEeccCCCCcceeeecccCc--ccHHHHHHHHHHHhhhcCCCC-CCCCcCCCCCe
Q 028185 33 GQHPLFVTWKKVVNGGEPRLRGCIGTLEA--RCLINGFKDYALTSALKDRRF-PPIQARELPSL 93 (212)
Q Consensus 33 ~~~g~FVTl~~~~~~~~~~LRGCIGt~~p--~pL~~~i~~~A~~AA~~DpRF-~Pl~~~EL~~l 93 (212)
.+.|-.+.++. |. .-+-=+.|++.+ ...++.+.++-+.+..=|||| .||..+=|.+|
T Consensus 490 ~~~Gk~~i~~~---G~-~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~L 549 (627)
T COG1154 490 LEIGKGELLKE---GE-KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLEL 549 (627)
T ss_pred ccccceEEEec---CC-cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHH
Confidence 44555444444 23 457778899887 678889999999999999999 48876655444
No 11
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=30.21 E-value=42 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=14.2
Q ss_pred CCceEEEEEEeccCCCCcce
Q 028185 34 QHPLFVTWKKVVNGGEPRLR 53 (212)
Q Consensus 34 ~~g~FVTl~~~~~~~~~~LR 53 (212)
.-|||+|+...++|. ..||
T Consensus 11 EpGVyiTl~~~p~G~-~~Lk 29 (59)
T PF08381_consen 11 EPGVYITLVSLPDGG-NDLK 29 (59)
T ss_pred CCeeEEEEEECCCCC-eeEE
Confidence 569999999987665 3443
No 12
>TIGR02396 diverge_rpsU rpsU-divergently transcribed protein. This uncharacterized protein is found in a number of Alphaproteobacteria and, with N-terminal regions long enough to be transit peptides, in eukaryotes. This phylogeny suggests mitochondrial derivation. In several Alphaproteobacteria, the gene for this protein is encoded divergently from rpsU, the gene for ribosomal protein S21. S21 is unusual in being encoded outside the usual long ribosomal protein operons, but rather in contexts that suggest regulation of the initiation of protein translation.
Probab=25.72 E-value=52 Score=27.63 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=21.5
Q ss_pred ecCchhhccCCCHHHHHHHHHHHcCCCCC
Q 028185 136 YLPEVAAHEGWTKVEAIDSLMRKAGFSGP 164 (212)
Q Consensus 136 ~LP~Va~E~~w~~~~~l~~l~~KAG~~~~ 164 (212)
.|+.|+ +.||+ .+.|...++.+|+++.
T Consensus 8 al~~vp-~~Gwt-~~al~~aa~~lgl~~~ 34 (184)
T TIGR02396 8 ALEHVP-FLGWT-NEALLLAARELGYSDS 34 (184)
T ss_pred HHHhhh-hcCCC-HHHHHHHHHHcCCCHH
Confidence 356666 88999 5678899999999963
No 13
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=24.87 E-value=86 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.9
Q ss_pred hhhccCCCHHHHHHHHHHHcCCCC
Q 028185 140 VAAHEGWTKVEAIDSLMRKAGFSG 163 (212)
Q Consensus 140 Va~E~~w~~~~~l~~l~~KAG~~~ 163 (212)
|....|.|-.+.|..+|+|-|+..
T Consensus 14 V~vrpG~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 14 VPTRPGESIRDLLSGLCEKRGINY 37 (73)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCh
Confidence 455678899999999999999986
No 14
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.23 E-value=41 Score=31.55 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=18.6
Q ss_pred CCCCceEEEEEEeccCCCCcceeeeccc
Q 028185 32 EGQHPLFVTWKKVVNGGEPRLRGCIGTL 59 (212)
Q Consensus 32 ~~~~g~FVTl~~~~~~~~~~LRGCIGt~ 59 (212)
+++.++-|-++-. + .+.+|||||--.
T Consensus 62 gkrrAvLiGINY~-g-Tk~ELrGCINDv 87 (362)
T KOG1546|consen 62 GKRRAVLIGINYP-G-TKNELRGCINDV 87 (362)
T ss_pred ccceEEEEeecCC-C-cHHHHhhhHHHH
Confidence 6778999988852 2 226899999643
No 15
>PF03889 DUF331: Domain of unknown function; InterPro: IPR005589 The members of this family are uncharacterised proteins from a number of bacterial species. They range in size from 50-100 residues.
Probab=22.65 E-value=37 Score=22.04 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHhhhcCCCCCC
Q 028185 68 FKDYALTSALKDRRFPP 84 (212)
Q Consensus 68 i~~~A~~AA~~DpRF~P 84 (212)
|.+||+.|-+.||-|..
T Consensus 3 I~dNalkAlv~~~LFr~ 19 (39)
T PF03889_consen 3 IKDNALKALVTSPLFRQ 19 (39)
T ss_pred cchhHHHHHHhCcchhh
Confidence 67899999999999964
No 16
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=21.79 E-value=2e+02 Score=18.31 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCceeee--cCchhhccCCCHHHHHHHHHHH
Q 028185 130 TRRSATY--LPEVAAHEGWTKVEAIDSLMRK 158 (212)
Q Consensus 130 ~~~~~t~--LP~Va~E~~w~~~~~l~~l~~K 158 (212)
+++.+.+ ||.+. -+|-|.++.++++..-
T Consensus 12 ~~y~~~~pdlpg~~-t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 12 GGYVAYFPDLPGCF-TQGDTLEEALENAKEA 41 (48)
T ss_dssp SSEEEEETTCCTCE-EEESSHHHHHHHHHHH
T ss_pred CeEEEEeCCccChh-hcCCCHHHHHHHHHHH
Confidence 6677776 67887 5788999999988653
No 17
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=20.61 E-value=1.1e+02 Score=30.01 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEeccC---ccccCCccCCcccceeEEEEEeC
Q 028185 62 RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTD---FETANNYLDWEVGTHGLIIEFTD 125 (212)
Q Consensus 62 ~pL~~~i~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~---~e~~~d~~d~~~G~hGlii~~~~ 125 (212)
.|+.+.|.++-.. -++|.|+.=.++ +..-++.-++. ....-++.-|-+|+|++++++..
T Consensus 66 ~p~iEeikr~~~~----~~dfyplag~~~-~~~k~l~epstvI~~~~~l~~~lw~~gk~n~~lR~~~ 127 (554)
T COG3044 66 VPLIEEIKRYQMA----ARDFYPLAGAEF-SGAKQLNEPSTVISGQTVLDSTLWLFGKHNIELRFRM 127 (554)
T ss_pred ccHHHHHHHHHhh----cccccccccchh-hcccccCCCceeEecccccCCcccccCccceEEeecc
Confidence 7899999888754 589999998887 22222221111 11223455699999999999833
No 18
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=1.1e+02 Score=27.85 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=33.1
Q ss_pred EEEEEeccCCCCcceeeecccCcccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEe
Q 028185 39 VTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSI 99 (212)
Q Consensus 39 VTl~~~~~~~~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSv 99 (212)
+.|+... + .-+--|-| +|.+ .+..|+.||+++.|||-+.-.+-+...+++-+
T Consensus 131 ~~W~i~V--D-vlVi~s~g-----n~~d-AiS~Ai~~AL~~T~lPkv~v~~dd~~~~~i~~ 182 (288)
T KOG1612|consen 131 YCWKIYV--D-VLVISSDG-----NLLD-AISIAIYAALNNTRLPKVIVAFDDDGEVEILL 182 (288)
T ss_pred eeEEEEE--e-EEEEecCC-----CHHH-HHHHHHHHHHhcccCCccccccccCCceeecc
Confidence 5666532 2 33444544 4534 56789999999999998876665555544433
No 19
>TIGR02520 pilus_B_mal_scr type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB).
Probab=20.32 E-value=2e+02 Score=27.80 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEeeHHHH
Q 028185 147 TKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 190 (212)
Q Consensus 147 ~~~~~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~~~y 190 (212)
+-.++|+.++...||.- ..-...++++||+++.|.+.|-.-
T Consensus 124 ~l~~~Ld~i~~~~gl~~---~~~~~~i~i~~~~TrtF~i~~~~~ 164 (497)
T TIGR02520 124 PLGGLLDQVTSRLGLSW---KYENGAVRIFYTDTRTFQVKALPG 164 (497)
T ss_pred cHHHHHHHHHHHcCcEE---EEECCEEEEEEEEEEEEEEecccc
Confidence 78999999999999972 332347999999999999998553
No 20
>PF11235 Med25_SD1: Mediator complex subunit 25 synapsin 1; InterPro: IPR021397 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, this SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This The function of the SD domains is unclear [].
Probab=20.22 E-value=1.1e+02 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhc-----CCCCCCCCcCC
Q 028185 65 INGFKDYALTSALK-----DRRFPPIQARE 89 (212)
Q Consensus 65 ~~~i~~~A~~AA~~-----DpRF~Pl~~~E 89 (212)
++.-..+|+.||.+ -+||+||+.-.
T Consensus 57 Aq~AAq~AVEAAknQKaglg~RF~pi~p~~ 86 (168)
T PF11235_consen 57 AQVAAQNAVEAAKNQKAGLGPRFSPINPLQ 86 (168)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCccc
Confidence 46677889999886 68999987643
Done!