Query 028185
Match_columns 212
No_of_seqs 127 out of 642
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zq7_A Hypothetical protein MM 100.0 3E-59 1E-63 398.4 16.5 168 5-186 7-188 (207)
2 1vaj_A Hypothetical protein PH 100.0 6.8E-59 2.3E-63 398.1 17.0 173 5-186 10-194 (214)
3 1wsc_A Hypothetical protein ST 100.0 5.4E-58 1.8E-62 396.1 13.9 176 5-188 17-207 (230)
4 1eaq_A RUNT-related transcript 66.5 3.7 0.00013 32.2 2.8 76 32-119 51-128 (140)
5 1jwq_A N-acetylmuramoyl-L-alan 18.9 1E+02 0.0035 24.3 3.8 73 33-106 71-152 (179)
6 3fv5_A DNA topoisomerase 4 sub 15.8 78 0.0027 25.6 2.4 24 56-79 13-36 (201)
7 2fho_A Spliceosomal protein SF 14.6 26 0.00088 22.7 -0.7 15 79-93 16-30 (47)
8 3qay_A Endolysin; amidase A/B 14.3 92 0.0032 24.6 2.4 72 33-107 76-156 (180)
9 2l9x_A Uncharacterized protein 13.0 29 0.00098 20.0 -0.7 8 52-59 6-13 (30)
10 4fu0_A D-alanine--D-alanine li 12.9 1.1E+02 0.0037 26.2 2.7 43 116-159 304-347 (357)
No 1
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=100.00 E-value=3e-59 Score=398.42 Aligned_cols=168 Identities=27% Similarity=0.415 Sum_probs=155.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCC-----CCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHh
Q 028185 5 NREMAVYCFDTLVAHYNSEDAPPP-----AFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS 75 (212)
Q Consensus 5 ~~~~~~~Ar~aI~~~L~~~~~~~~-----~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~A 75 (212)
.+.||++||++|.++|++++.+.+ .++ ++++||||||++ + |+||||||||+| +||.++|++||++|
T Consensus 7 ~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGt~~p~~~L~~~i~~~Ai~A 81 (207)
T 1zq7_A 7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE----G-GLLRGCIGHPYPDSTLKEAILDSAISA 81 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE----T-TEEEEEEEECSCCSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE----C-CeEEEeeccCCccccHHHHHHHHHHHH
Confidence 567999999999999987765543 233 679999999998 5 899999999999 99999999999999
Q ss_pred hhcCCCCCCCCcCCCCCeeEEEEeccCcccc-----CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185 76 ALKDRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE 150 (212)
Q Consensus 76 A~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~-----~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~ 150 (212)
||+||||+||+++||++|.|+||||++|+++ +++.+|+||+|||+|++ +.++||||||||+|+|||+++
T Consensus 82 A~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~------g~~~g~lLPqVa~E~gWd~ee 155 (207)
T 1zq7_A 82 ATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSID 155 (207)
T ss_dssp HHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTCCHHH
T ss_pred ccCCCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE------CCeeeEECCcchhhcCCCHHH
Confidence 9999999999999999999999999999999 78899999999999999 899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEee
Q 028185 151 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALH 186 (212)
Q Consensus 151 ~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~ 186 (212)
||++||+||||++ +.|.++++|+|||+++|++.
T Consensus 156 fl~~l~~KAG~~~---~~w~~~~~v~rf~~~~~~E~ 188 (207)
T 1zq7_A 156 FLSHTCMKAGLSP---DAWVKGAEVYCFEGQIFKEK 188 (207)
T ss_dssp HHHHHHHHTTBCG---GGGTTTCEEEEECEEEEEES
T ss_pred HHHHHHHhcCCCh---hhccCceEEEEEEEEEEEEe
Confidence 9999999999998 56666999999999999983
No 2
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=100.00 E-value=6.8e-59 Score=398.06 Aligned_cols=173 Identities=25% Similarity=0.350 Sum_probs=156.1
Q ss_pred chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhc
Q 028185 5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK 78 (212)
Q Consensus 5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~ 78 (212)
.+.||++||++|.++|++++.+ ++.++ ++++||||||++.+++.+|+||||||||+| +||+++|++||++|||+
T Consensus 10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~ 89 (214)
T 1vaj_A 10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD 89 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence 4679999999999999876654 22343 679999999997533324899999999999 99999999999999999
Q ss_pred CCCCCCCCcCCCCCeeEEEEeccCcccc-----CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHH
Q 028185 79 DRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAID 153 (212)
Q Consensus 79 DpRF~Pl~~~EL~~l~ieVSvL~~~e~~-----~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~ 153 (212)
||||+||+++||++|.|+||||++||++ +++.+|+||+|||+|++ +.++||||||||+|++||+++||+
T Consensus 90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~------g~~~g~~LPqV~~E~~W~~~e~l~ 163 (214)
T 1vaj_A 90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDEEEFLA 163 (214)
T ss_dssp CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe------CCeeEEECCCchhhcCCCHHHHHH
Confidence 9999999999999999999999999999 57889999999999999 899999999999999999999999
Q ss_pred HHHHHcCCCCCCcccc-cCcEEEEEEEEEEEEee
Q 028185 154 SLMRKAGFSGPITESL-RKRIRLTRYQSTLFALH 186 (212)
Q Consensus 154 ~l~~KAG~~~~~~~~~-~~~i~v~ry~~~~~~~~ 186 (212)
+||+||||+++ .| .++++|+|||+++|++.
T Consensus 164 ~l~~KAG~~~d---~w~~~~~~l~rf~~~~f~E~ 194 (214)
T 1vaj_A 164 ETCWKAGLPPD---CWLDEDTKVYKFTAEIFEEE 194 (214)
T ss_dssp HHHHHTTSCTT---GGGCTTSEEEEECEEEEEES
T ss_pred HHHHHcCCCcc---cccCCCeEEEEEEEEEEEEe
Confidence 99999999983 44 46899999999999984
No 3
>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1
Probab=100.00 E-value=5.4e-58 Score=396.06 Aligned_cols=176 Identities=24% Similarity=0.363 Sum_probs=156.0
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCC-C----CC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHh
Q 028185 5 NREMAVYCFDTLVAHYNSEDAPPP-A----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS 75 (212)
Q Consensus 5 ~~~~~~~Ar~aI~~~L~~~~~~~~-~----~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~A 75 (212)
.+.||.+||++|.++|++++.+++ . ++ ++++||||||++.+..+ |+||||||||+| +||+++|++||++|
T Consensus 17 ~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~~~~~~-g~LRGCIGt~~p~~~L~~~i~~~Ai~A 95 (230)
T 1wsc_A 17 GKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAA 95 (230)
T ss_dssp HHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEECSSC-EEEEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCccccccCchhhcCcccEEEEEEECCCCC-CceeeeecCCCccccHHHHHHHHHHHh
Confidence 567999999999999988765322 1 33 78999999999643224 899999999999 99999999999999
Q ss_pred hhcCCCCCCCCcCCCCCeeEEEEeccCccccC------CccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHH
Q 028185 76 ALKDRRFPPIQARELPSLECTVSILTDFETAN------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 149 (212)
Q Consensus 76 A~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~------d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~ 149 (212)
||+||||+||+++||++|.|+||||++||+++ ++.+|+||+|||+|++ |++++||||||||.|++||++
T Consensus 96 A~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~-----g~~~~g~lLPqV~~e~~w~~e 170 (230)
T 1wsc_A 96 AFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCWDEE 170 (230)
T ss_dssp HHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTCCHH
T ss_pred ccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee-----CCCceEEECCCcccccCCCHH
Confidence 99999999999999999999999999999994 6789999999999999 339999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEeeHH
Q 028185 150 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYS 188 (212)
Q Consensus 150 ~~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~~ 188 (212)
+||++||+||||+++ .|..++++|+|||+++|++.+.
T Consensus 171 efl~~l~~KAGl~~~--~w~~~~~~v~rf~~~~f~E~~p 207 (230)
T 1wsc_A 171 TFLAETCIKAGLEPD--CWLNNKVKIKKFQGIIFREEKP 207 (230)
T ss_dssp HHHHHHHHHHTSCTT--GGGCTTSEEEEECEEEEEESST
T ss_pred HHHHHHHHhCCCCCc--ccccCceEEEEEEEEEEEecCC
Confidence 999999999999984 3334589999999999998543
No 4
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=66.47 E-value=3.7 Score=32.19 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=54.8
Q ss_pred CCCCceEEEEEEeccCC-CCcceeeecccCcccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEeccCccccCCc-
Q 028185 32 EGQHPLFVTWKKVVNGG-EPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNY- 109 (212)
Q Consensus 32 ~~~~g~FVTl~~~~~~~-~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~- 109 (212)
.-+-|.-||+.--++.+ -.+||.|.-....+ .|-|+|=||-+-+ .-=++..+.|+|.+.|-.+..+
T Consensus 51 ~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknq-----------vA~FnDLRFvgRS-GRGKsFtlTItv~t~PpqvAty~ 118 (140)
T 1eaq_A 51 DVPDGTLVTVMAGNDENYSAELRNATAAMKNQ-----------VARFNDLRFVGRS-GRGKSFTLTITVFTNPPQVATYH 118 (140)
T ss_dssp CCCTTCEEEEEEEETTEEEECEESCEEEEETT-----------EEECSSCEECSCC-CTTCCBEEEEEECSSSCEEEECS
T ss_pred ccCCCCEEEEEecCCcchhHHHHhHHHHHhhc-----------cceeecccccccC-CCCccEEEEEEEecCCcchhhhe
Confidence 67889999999733221 16799998766542 2459999998844 3467899999999998888766
Q ss_pred cCCcccceeE
Q 028185 110 LDWEVGTHGL 119 (212)
Q Consensus 110 ~d~~~G~hGl 119 (212)
..+.+-.+|=
T Consensus 119 ~AIKVTVDGP 128 (140)
T 1eaq_A 119 RAIKITVDGP 128 (140)
T ss_dssp SCBEEESSCC
T ss_pred eeEEEEecCC
Confidence 4577766663
No 5
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=18.87 E-value=1e+02 Score=24.32 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=48.0
Q ss_pred CCCceEEEEEEeccCCCCcceeeecccCc---ccHHHHHHHHHHHh-hhcCC-----CCCCCCcCCCCCeeEEEEeccCc
Q 028185 33 GQHPLFVTWKKVVNGGEPRLRGCIGTLEA---RCLINGFKDYALTS-ALKDR-----RFPPIQARELPSLECTVSILTDF 103 (212)
Q Consensus 33 ~~~g~FVTl~~~~~~~~~~LRGCIGt~~p---~pL~~~i~~~A~~A-A~~Dp-----RF~Pl~~~EL~~l~ieVSvL~~~ 103 (212)
...-+||++|.....+ ..-+|+--.+.+ ..|++.|...-... .+.|. .|.-|.....|.+-||+-.++++
T Consensus 71 ~~adlfiSiH~Na~~~-~~~~G~ev~~~~~~s~~lA~~i~~~l~~~~g~~~rgvk~~~~~vLr~t~~PavLvE~gFisN~ 149 (179)
T 1jwq_A 71 LKANVFVSIHANSSGS-SASNGTETYYQRSASKAFANVMHKYFAPATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNA 149 (179)
T ss_dssp TTCSEEEEEEEECCSS-TTCCCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEECCCHHHHSCSSCEEEEEEEETTSH
T ss_pred hCCCEEEEEccCCCCC-CCCCeEEEEEEChHHHHHHHHHHHHHHHHcCCCCCCcccCcchhccCCCCCEEEEEecCCCCH
Confidence 4677999999854433 467887665554 56877666554332 12222 46666777788888888888887
Q ss_pred ccc
Q 028185 104 ETA 106 (212)
Q Consensus 104 e~~ 106 (212)
++.
T Consensus 150 ~d~ 152 (179)
T 1jwq_A 150 KEE 152 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 6
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=15.85 E-value=78 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.0
Q ss_pred ecccCcccHHHHHHHHHHHhhhcC
Q 028185 56 IGTLEARCLINGFKDYALTSALKD 79 (212)
Q Consensus 56 IGt~~p~pL~~~i~~~A~~AA~~D 79 (212)
||+..|..+..+|++||+.||...
T Consensus 13 ig~~~~~~~v~Elv~NsiDa~~~g 36 (201)
T 3fv5_A 13 TDTTRPNHLGQEVIDNSVDEALAG 36 (201)
T ss_dssp SCTTSTHHHHHHHHHHHHHHHHTT
T ss_pred ECCCChhhhhHHHHHHHHHHHhcC
Confidence 566667789999999999999964
No 7
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.61 E-value=26 Score=22.72 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=13.1
Q ss_pred CCCCCCCCcCCCCCe
Q 028185 79 DRRFPPIQARELPSL 93 (212)
Q Consensus 79 DpRF~Pl~~~EL~~l 93 (212)
|.|..||+.+||+.+
T Consensus 16 ~~rnrpltDEeLD~~ 30 (47)
T 2fho_A 16 DERNRPLSDEELDAM 30 (47)
T ss_dssp CCCCCCSCTTHHHHH
T ss_pred ccccCCCCHHHHHHh
Confidence 779999999999875
No 8
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=14.29 E-value=92 Score=24.57 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=47.1
Q ss_pred CCCceEEEEEEeccCCCCcceeeecccCc---ccHHHHHHHHHHHhhhcC------CCCCCCCcCCCCCeeEEEEeccCc
Q 028185 33 GQHPLFVTWKKVVNGGEPRLRGCIGTLEA---RCLINGFKDYALTSALKD------RRFPPIQARELPSLECTVSILTDF 103 (212)
Q Consensus 33 ~~~g~FVTl~~~~~~~~~~LRGCIGt~~p---~pL~~~i~~~A~~AA~~D------pRF~Pl~~~EL~~l~ieVSvL~~~ 103 (212)
...-+||++|.... . +.-+|+-=.+.+ ..|++.|...-.. ++.| ..|.=|.....|.+-||+-.++++
T Consensus 76 ~~aDlfISIH~Na~-~-~~~~G~ev~~~~~~s~~lA~~i~~~l~~-~~~~rGvk~~~~~~vLr~t~~PavLvE~gFisN~ 152 (180)
T 3qay_A 76 GGYDLLIELHLNAS-N-GQGKGSEVLYYSNKGLEYATRICDKLGT-VFKNRGAKLDKRLYILNSSKPTAVLIESFFCDNK 152 (180)
T ss_dssp SCCSEEEEEEEECS-S-SCCCSEEEEESSHHHHHHHHHHHHHHTT-TSCEEEEEECSCCHHHHSCSSEEEEEEEEETTCH
T ss_pred cCCCEEEEeeeCCC-C-CCCCEEEEEEECchHHHHHHHHHHHHHH-HhccCCcccCCCeEEEcCCCCCEEEEEecccCCH
Confidence 46789999998543 2 567888766655 4577765554333 2433 235556667778888888888887
Q ss_pred cccC
Q 028185 104 ETAN 107 (212)
Q Consensus 104 e~~~ 107 (212)
++..
T Consensus 153 ~d~~ 156 (180)
T 3qay_A 153 EDYD 156 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 9
>2l9x_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTH; NMR {Bacillus cereus 95}
Probab=12.96 E-value=29 Score=19.95 Aligned_cols=8 Identities=50% Similarity=1.169 Sum_probs=5.7
Q ss_pred ceeeeccc
Q 028185 52 LRGCIGTL 59 (212)
Q Consensus 52 LRGCIGt~ 59 (212)
+.||||+-
T Consensus 6 vigcigsc 13 (30)
T 2l9x_A 6 VIGCIGSC 13 (30)
T ss_dssp HHHHTTHH
T ss_pred EEeeeeeE
Confidence 46888864
No 10
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=12.92 E-value=1.1e+02 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=28.2
Q ss_pred cee-EEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHHHHc
Q 028185 116 THG-LIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKA 159 (212)
Q Consensus 116 ~hG-lii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~~KA 159 (212)
.+| +++--.++.||-. ..-++|+.|...|++-.+++..++.-|
T Consensus 304 ~dg~~~vlEvNt~PG~t-~~S~~p~~~~~~G~~~~~li~~li~~a 347 (357)
T 4fu0_A 304 PSGEIVFNEVNTIPGFT-SHSRYPNMMKGIGLSFSQMLDKLIGLY 347 (357)
T ss_dssp TTCCEEEEEEESSCCCS-TTCHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCCCCC-cccHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 445 3333334434432 334679999899999999999987765
Done!