Query 028187
Match_columns 212
No_of_seqs 141 out of 1098
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02496 probable phosphopanto 100.0 1.4E-59 3E-64 392.8 21.3 207 5-211 2-208 (209)
2 PRK07313 phosphopantothenoylcy 100.0 1.6E-53 3.5E-58 351.3 18.9 175 23-201 2-179 (182)
3 TIGR02113 coaC_strep phosphopa 100.0 5.9E-53 1.3E-57 346.6 18.3 173 23-199 1-176 (177)
4 KOG0672 Halotolerance protein 100.0 1.4E-51 3.1E-56 334.5 12.1 192 11-202 9-207 (218)
5 PRK05579 bifunctional phosphop 100.0 6.4E-50 1.4E-54 364.5 19.2 186 19-210 3-191 (399)
6 PRK13982 bifunctional SbtC-lik 100.0 7E-50 1.5E-54 369.4 19.2 187 18-210 66-259 (475)
7 TIGR00521 coaBC_dfp phosphopan 100.0 1.9E-47 4.1E-52 347.3 19.0 184 20-210 1-188 (390)
8 PRK08305 spoVFB dipicolinate s 100.0 6.2E-41 1.3E-45 278.5 16.0 172 20-206 3-188 (196)
9 PRK05920 aromatic acid decarbo 100.0 4.9E-40 1.1E-44 275.0 19.0 164 21-197 2-182 (204)
10 PRK06029 3-octaprenyl-4-hydrox 100.0 4.9E-40 1.1E-44 271.4 15.5 155 23-197 2-167 (185)
11 COG0452 Dfp Phosphopantothenoy 100.0 2.3E-39 5E-44 294.5 16.3 182 20-210 2-186 (392)
12 TIGR00421 ubiX_pad polyprenyl 100.0 3.2E-39 7E-44 266.0 14.9 158 24-197 1-164 (181)
13 TIGR02852 spore_dpaB dipicolin 100.0 5.4E-38 1.2E-42 259.4 15.0 164 23-206 1-183 (187)
14 PF02441 Flavoprotein: Flavopr 100.0 3E-36 6.4E-41 235.2 9.2 127 23-154 1-129 (129)
15 COG0163 UbiX 3-polyprenyl-4-hy 100.0 2.1E-30 4.5E-35 210.9 13.4 161 22-197 2-169 (191)
16 TIGR02699 archaeo_AfpA archaeo 100.0 6.6E-29 1.4E-33 203.2 11.4 141 24-170 1-165 (174)
17 TIGR02700 flavo_MJ0208 archaeo 99.9 3.2E-24 7E-29 183.2 10.3 117 24-143 1-130 (234)
18 COG1036 Archaeal flavoproteins 99.8 1.8E-19 3.9E-24 144.2 9.8 144 19-170 5-175 (187)
19 TIGR02536 eut_hyp ethanolamine 98.3 3E-06 6.4E-11 71.5 8.3 75 98-172 52-135 (207)
20 PF06258 Mito_fiss_Elm1: Mitoc 87.9 19 0.0004 32.2 13.3 86 94-200 223-309 (311)
21 PF03033 Glyco_transf_28: Glyc 84.0 2.3 5E-05 32.1 4.8 44 25-68 1-46 (139)
22 cd01075 NAD_bind_Leu_Phe_Val_D 81.3 26 0.00057 28.9 10.5 30 135-170 107-137 (200)
23 COG1819 Glycosyl transferases, 79.2 14 0.00031 34.0 9.0 134 21-203 235-369 (406)
24 PF13528 Glyco_trans_1_3: Glyc 72.8 5.7 0.00012 34.3 4.4 43 23-66 1-45 (318)
25 TIGR00661 MJ1255 conserved hyp 72.8 8.2 0.00018 33.9 5.4 44 24-67 1-46 (321)
26 COG3660 Predicted nucleoside-d 72.2 72 0.0016 28.5 11.7 165 9-201 148-327 (329)
27 PRK10499 PTS system N,N'-diace 67.7 48 0.0011 24.7 8.6 54 99-165 50-104 (106)
28 PF13528 Glyco_trans_1_3: Glyc 67.1 16 0.00036 31.4 6.1 69 97-198 248-316 (318)
29 PF01171 ATP_bind_3: PP-loop f 65.4 12 0.00027 30.1 4.6 32 24-55 1-34 (182)
30 COG0707 MurG UDP-N-acetylgluco 62.8 1.2E+02 0.0026 27.5 11.8 137 22-201 182-323 (357)
31 PF13241 NAD_binding_7: Putati 62.2 19 0.00041 26.4 4.7 36 19-58 4-40 (103)
32 PF00582 Usp: Universal stress 61.5 19 0.00041 25.9 4.7 33 22-54 2-36 (140)
33 cd03784 GT1_Gtf_like This fami 61.4 75 0.0016 28.3 9.4 53 130-201 319-371 (401)
34 cd03784 GT1_Gtf_like This fami 58.0 17 0.00037 32.4 4.6 45 24-68 2-48 (401)
35 PRK06719 precorrin-2 dehydroge 55.8 22 0.00048 28.3 4.5 38 14-54 5-42 (157)
36 cd01076 NAD_bind_1_Glu_DH NAD( 55.4 23 0.00049 30.1 4.7 31 135-171 128-158 (227)
37 COG0031 CysK Cysteine synthase 54.7 7.9 0.00017 34.6 1.8 56 9-64 243-299 (300)
38 TIGR01133 murG undecaprenyldip 54.3 21 0.00046 30.9 4.5 35 24-58 2-38 (348)
39 COG1819 Glycosyl transferases, 54.3 14 0.00031 34.0 3.5 46 22-67 1-48 (406)
40 PRK12815 carB carbamoyl phosph 53.3 1.2E+02 0.0026 31.7 10.4 44 14-59 1-52 (1068)
41 PRK09982 universal stress prot 53.3 24 0.00051 27.0 4.1 33 22-54 3-37 (142)
42 PRK00726 murG undecaprenyldiph 50.0 44 0.00095 29.3 5.9 78 95-203 248-325 (357)
43 PRK06718 precorrin-2 dehydroge 49.7 25 0.00055 29.1 4.0 38 15-55 3-40 (202)
44 cd03785 GT1_MurG MurG is an N- 48.6 28 0.00061 30.1 4.4 36 24-59 1-38 (350)
45 PF02635 DrsE: DsrE/DsrF-like 48.5 42 0.00091 24.2 4.7 43 23-65 1-51 (122)
46 COG0037 MesJ tRNA(Ile)-lysidin 47.5 34 0.00073 29.4 4.6 36 22-57 21-56 (298)
47 TIGR02432 lysidine_TilS_N tRNA 46.4 32 0.0007 27.5 4.1 34 24-57 1-36 (189)
48 TIGR01470 cysG_Nterm siroheme 45.7 32 0.00068 28.7 4.0 124 15-160 2-138 (205)
49 COG3962 Acetolactate synthase 44.3 30 0.00066 33.1 4.0 72 123-201 97-171 (617)
50 PRK13608 diacylglycerol glucos 43.8 2.4E+02 0.0052 25.4 9.8 54 95-170 269-322 (391)
51 PRK00726 murG undecaprenyldiph 43.4 40 0.00086 29.5 4.5 36 23-58 2-39 (357)
52 KOG1502 Flavonol reductase/cin 43.3 33 0.00071 31.1 4.0 32 26-58 8-40 (327)
53 TIGR00853 pts-lac PTS system, 42.9 60 0.0013 23.6 4.7 35 99-144 50-84 (95)
54 COG1648 CysG Siroheme synthase 42.9 46 0.001 28.0 4.6 42 14-58 4-45 (210)
55 PF09001 DUF1890: Domain of un 42.8 34 0.00074 27.2 3.5 27 38-64 16-43 (139)
56 cd01993 Alpha_ANH_like_II This 42.3 43 0.00094 26.3 4.2 34 24-57 1-38 (185)
57 PRK05678 succinyl-CoA syntheta 42.2 1.7E+02 0.0037 25.9 8.2 28 19-50 6-34 (291)
58 PF02670 DXP_reductoisom: 1-de 41.7 26 0.00056 27.4 2.7 31 25-56 2-32 (129)
59 cd05564 PTS_IIB_chitobiose_lic 41.4 1.3E+02 0.0029 21.7 6.5 34 99-143 46-79 (96)
60 PRK15118 universal stress glob 40.8 57 0.0012 24.5 4.5 33 22-54 3-37 (144)
61 COG2515 Acd 1-aminocyclopropan 40.8 1.4E+02 0.0031 26.9 7.5 53 99-164 180-232 (323)
62 PRK10116 universal stress prot 39.4 54 0.0012 24.5 4.2 33 22-54 3-37 (142)
63 PRK10669 putative cation:proto 39.4 2.5E+02 0.0054 26.8 9.5 116 22-172 417-536 (558)
64 PRK10696 tRNA 2-thiocytidine b 39.1 61 0.0013 27.7 4.9 35 21-55 28-66 (258)
65 PF09623 Cas_NE0113: CRISPR-as 38.9 67 0.0015 27.5 5.0 42 22-64 1-46 (224)
66 TIGR03590 PseG pseudaminic aci 37.5 1.3E+02 0.0028 26.0 6.7 37 23-59 171-210 (279)
67 TIGR00243 Dxr 1-deoxy-D-xylulo 37.5 46 0.001 30.9 4.0 34 22-56 2-35 (389)
68 TIGR01426 MGT glycosyltransfer 36.9 1.1E+02 0.0024 27.3 6.4 54 130-202 306-359 (392)
69 PRK07667 uridine kinase; Provi 36.8 45 0.00098 27.1 3.6 40 19-58 12-55 (193)
70 TIGR00730 conserved hypothetic 36.5 60 0.0013 26.5 4.2 85 96-198 93-177 (178)
71 PF02593 dTMP_synthase: Thymid 35.9 67 0.0014 27.4 4.5 62 97-174 49-112 (217)
72 cd01992 PP-ATPase N-terminal d 35.6 64 0.0014 25.5 4.2 36 24-59 1-38 (185)
73 PRK05562 precorrin-2 dehydroge 35.5 55 0.0012 27.9 3.9 42 14-58 17-58 (223)
74 PRK05294 carB carbamoyl phosph 34.5 2.5E+02 0.0055 29.3 9.3 35 22-56 7-49 (1066)
75 COG4425 Predicted membrane pro 34.2 37 0.00079 32.4 2.8 66 4-69 270-340 (588)
76 cd00293 USP_Like Usp: Universa 34.1 81 0.0018 22.2 4.3 32 24-55 1-34 (130)
77 cd01988 Na_H_Antiporter_C The 33.9 73 0.0016 23.1 4.1 32 24-55 1-34 (132)
78 PHA03392 egt ecdysteroid UDP-g 33.7 94 0.002 29.6 5.6 33 130-169 379-411 (507)
79 PRK06249 2-dehydropantoate 2-r 33.7 3.2E+02 0.007 23.8 9.4 33 23-58 6-38 (313)
80 PLN02477 glutamate dehydrogena 33.3 4E+02 0.0088 24.8 9.9 31 135-171 303-333 (410)
81 PF03446 NAD_binding_2: NAD bi 32.5 2.4E+02 0.0052 22.0 7.1 116 23-174 2-122 (163)
82 PRK14664 tRNA-specific 2-thiou 32.3 89 0.0019 28.6 5.0 35 21-57 4-38 (362)
83 cd00377 ICL_PEPM Members of th 31.7 1.4E+02 0.003 25.5 5.9 66 134-201 68-135 (243)
84 TIGR01139 cysK cysteine syntha 31.4 29 0.00063 30.2 1.7 56 9-64 238-294 (298)
85 PRK14731 coaE dephospho-CoA ki 31.1 42 0.00091 27.7 2.5 25 21-46 2-26 (208)
86 PF04816 DUF633: Family of unk 30.9 3.1E+02 0.0068 22.8 8.2 60 94-170 61-121 (205)
87 PRK14665 mnmA tRNA-specific 2- 30.6 95 0.0021 28.3 4.9 31 22-54 5-35 (360)
88 PF04101 Glyco_tran_28_C: Glyc 30.4 58 0.0013 25.3 3.1 56 95-169 68-123 (167)
89 PRK10660 tilS tRNA(Ile)-lysidi 30.2 1E+02 0.0022 28.8 5.1 36 22-57 15-53 (436)
90 PLN02572 UDP-sulfoquinovose sy 30.0 72 0.0016 29.6 4.1 33 19-54 44-77 (442)
91 PF03054 tRNA_Me_trans: tRNA m 29.7 79 0.0017 28.9 4.2 30 23-54 1-30 (356)
92 cd04951 GT1_WbdM_like This fam 29.6 80 0.0017 26.8 4.1 34 24-57 1-38 (360)
93 PRK00025 lpxB lipid-A-disaccha 29.6 1.3E+02 0.0028 26.4 5.6 88 95-205 257-344 (380)
94 cd01712 ThiI ThiI is required 29.4 92 0.002 24.7 4.2 32 24-57 1-32 (177)
95 COG1104 NifS Cysteine sulfinat 29.3 89 0.0019 29.0 4.5 47 121-173 73-125 (386)
96 COG1184 GCD2 Translation initi 29.1 71 0.0015 28.6 3.7 44 20-63 141-185 (301)
97 cd05560 Xcc1710_like Xcc1710_l 29.1 47 0.001 24.9 2.2 42 23-64 53-95 (109)
98 PRK13303 L-aspartate dehydroge 28.9 3.7E+02 0.0081 23.0 10.6 111 24-170 3-118 (265)
99 PRK10537 voltage-gated potassi 28.8 4.7E+02 0.01 24.1 11.0 115 22-172 240-357 (393)
100 PRK12446 undecaprenyldiphospho 28.5 1.9E+02 0.0042 25.8 6.5 76 96-202 249-325 (352)
101 cd00248 Mth938-like Mth938-lik 28.5 44 0.00095 25.0 2.0 43 22-64 52-95 (109)
102 COG3473 Maleate cis-trans isom 28.3 2.4E+02 0.0052 24.2 6.5 65 128-201 112-177 (238)
103 cd01989 STK_N The N-terminal d 28.3 84 0.0018 23.5 3.6 31 24-54 1-33 (146)
104 PRK09590 celB cellobiose phosp 28.0 1.3E+02 0.0027 22.5 4.4 35 23-57 2-38 (104)
105 PF10727 Rossmann-like: Rossma 27.9 91 0.002 24.1 3.7 35 21-59 9-44 (127)
106 PRK10637 cysG siroheme synthas 27.7 81 0.0018 29.5 4.1 39 14-55 4-42 (457)
107 PF04430 DUF498: Protein of un 27.7 41 0.00089 25.0 1.7 43 22-64 53-96 (110)
108 PLN02871 UDP-sulfoquinovose:DA 27.6 1.3E+02 0.0029 27.7 5.4 38 20-58 56-101 (465)
109 COG1509 KamA Lysine 2,3-aminom 27.1 2.5E+02 0.0055 25.9 6.9 68 91-172 187-256 (369)
110 PLN02735 carbamoyl-phosphate s 26.6 4.9E+02 0.011 27.5 9.8 35 23-57 24-66 (1102)
111 cd01351 Aconitase Aconitase ca 26.5 62 0.0013 29.9 3.0 45 135-188 299-349 (389)
112 PLN02605 monogalactosyldiacylg 26.4 4.6E+02 0.01 23.3 12.1 69 95-201 278-346 (382)
113 TIGR02195 heptsyl_trn_II lipop 26.1 1.2E+02 0.0027 26.4 4.7 41 24-64 1-45 (334)
114 cd01987 USP_OKCHK USP domain i 26.1 1E+02 0.0022 22.4 3.6 31 24-54 1-33 (124)
115 cd03808 GT1_cap1E_like This fa 26.0 1.2E+02 0.0025 25.1 4.4 37 24-60 1-39 (359)
116 PF06897 DUF1269: Protein of u 25.9 2.8E+02 0.0061 20.6 6.6 55 113-173 32-87 (102)
117 TIGR00170 leuC 3-isopropylmala 25.7 1.6E+02 0.0034 28.0 5.6 87 100-208 339-435 (465)
118 COG1654 BirA Biotin operon rep 25.6 61 0.0013 23.1 2.2 22 151-172 33-54 (79)
119 PF13579 Glyco_trans_4_4: Glyc 25.6 85 0.0018 23.0 3.2 23 36-58 5-28 (160)
120 TIGR03492 conserved hypothetic 25.3 3.4E+02 0.0074 24.7 7.6 14 130-143 310-323 (396)
121 PRK12446 undecaprenyldiphospho 25.2 1.2E+02 0.0025 27.2 4.5 37 23-60 2-41 (352)
122 TIGR00725 conserved hypothetic 25.1 1.4E+02 0.003 23.9 4.4 35 97-143 89-123 (159)
123 PRK15005 universal stress prot 24.9 1.4E+02 0.003 22.2 4.3 32 22-53 2-37 (144)
124 cd03789 GT1_LPS_heptosyltransf 24.8 1.5E+02 0.0032 25.1 4.9 42 24-65 1-46 (279)
125 COG3980 spsG Spore coat polysa 24.8 96 0.0021 27.9 3.7 75 22-108 158-236 (318)
126 PF00289 CPSase_L_chain: Carba 24.2 79 0.0017 23.7 2.7 97 22-173 2-107 (110)
127 PF14784 ECIST_Cterm: C-termin 24.2 1.2E+02 0.0026 23.6 3.7 46 10-55 74-123 (126)
128 PRK13302 putative L-aspartate 24.1 4.7E+02 0.01 22.5 11.0 39 21-60 5-43 (271)
129 PF13460 NAD_binding_10: NADH( 23.7 76 0.0016 24.7 2.7 30 26-59 3-33 (183)
130 PLN02211 methyl indole-3-aceta 23.6 3.9E+02 0.0084 22.6 7.3 60 137-201 20-81 (273)
131 PRK10916 ADP-heptose:LPS hepto 23.4 1.3E+02 0.0029 26.5 4.4 41 24-64 2-46 (348)
132 PRK05447 1-deoxy-D-xylulose 5- 23.4 1E+02 0.0022 28.6 3.7 32 23-55 3-34 (385)
133 PRK00143 mnmA tRNA-specific 2- 23.1 1.4E+02 0.0029 27.0 4.5 30 23-54 1-30 (346)
134 PLN02965 Probable pheophorbida 23.0 3.6E+02 0.0078 22.1 6.9 60 136-201 4-66 (255)
135 PF00201 UDPGT: UDP-glucoronos 23.0 1.4E+02 0.003 27.7 4.6 56 127-202 353-409 (500)
136 PLN02828 formyltetrahydrofolat 23.0 1.5E+02 0.0032 26.1 4.5 37 20-58 68-107 (268)
137 PF03308 ArgK: ArgK protein; 22.8 75 0.0016 28.0 2.6 39 22-60 27-69 (266)
138 PF00551 Formyl_trans_N: Formy 22.7 1.3E+02 0.0029 24.2 4.0 36 23-60 1-39 (181)
139 PRK06196 oxidoreductase; Provi 22.7 2E+02 0.0044 24.8 5.4 39 14-55 18-57 (315)
140 PRK15456 universal stress prot 22.7 1.8E+02 0.0038 21.8 4.5 33 22-54 2-37 (142)
141 PLN02696 1-deoxy-D-xylulose-5- 22.6 1.1E+02 0.0024 29.0 3.9 35 21-56 57-91 (454)
142 PLN02356 phosphateglycerate ki 22.6 75 0.0016 29.8 2.8 56 9-64 342-398 (423)
143 cd05125 Mth938_2P1-like Mth938 22.6 69 0.0015 24.3 2.1 43 22-64 54-97 (114)
144 TIGR02083 LEU2 3-isopropylmala 22.6 27 0.00059 32.7 -0.1 76 99-190 291-375 (419)
145 PRK06027 purU formyltetrahydro 22.5 1.2E+02 0.0027 26.6 4.0 38 19-58 86-126 (286)
146 COG1703 ArgK Putative periplas 22.5 75 0.0016 28.7 2.6 42 19-60 46-91 (323)
147 TIGR00420 trmU tRNA (5-methyla 22.1 1.6E+02 0.0035 26.6 4.8 32 23-56 1-32 (352)
148 PF13477 Glyco_trans_4_2: Glyc 21.8 1.8E+02 0.0039 21.3 4.4 23 38-60 13-36 (139)
149 PRK07806 short chain dehydroge 21.8 1.2E+02 0.0027 24.7 3.7 24 184-207 211-234 (248)
150 PLN02695 GDP-D-mannose-3',5'-e 21.7 1.2E+02 0.0026 27.2 3.9 27 28-55 25-52 (370)
151 COG0482 TrmU Predicted tRNA(5- 21.6 1.7E+02 0.0036 26.9 4.7 33 21-55 2-34 (356)
152 COG1880 CdhB CO dehydrogenase/ 21.6 4.6E+02 0.0099 21.5 7.7 66 134-209 35-104 (170)
153 PRK14031 glutamate dehydrogena 21.5 5.6E+02 0.012 24.2 8.3 22 150-171 344-365 (444)
154 TIGR01138 cysM cysteine syntha 21.4 55 0.0012 28.6 1.5 55 9-64 231-286 (290)
155 PLN00021 chlorophyllase 21.4 1.8E+02 0.0039 25.8 4.8 37 135-173 51-87 (313)
156 TIGR00268 conserved hypothetic 21.3 1.6E+02 0.0035 25.0 4.4 32 22-55 12-43 (252)
157 KOG1696 60s ribosomal protein 21.1 1.6E+02 0.0034 24.4 4.0 47 124-173 10-56 (193)
158 TIGR02086 IPMI_arch 3-isopropy 21.0 42 0.0009 31.4 0.7 65 117-190 295-369 (412)
159 PF01022 HTH_5: Bacterial regu 20.6 1.1E+02 0.0024 18.8 2.5 18 150-167 28-45 (47)
160 COG0429 Predicted hydrolase of 20.6 1E+02 0.0022 28.1 3.1 33 25-57 80-113 (345)
161 PRK12464 1-deoxy-D-xylulose 5- 20.5 80 0.0017 29.3 2.4 30 26-56 1-30 (383)
162 COG5017 Uncharacterized conser 20.4 2.1E+02 0.0045 23.1 4.4 13 131-143 81-93 (161)
163 PRK12746 short chain dehydroge 20.4 2E+02 0.0043 23.5 4.7 20 183-202 217-236 (254)
164 PF02780 Transketolase_C: Tran 20.3 2.4E+02 0.0053 20.8 4.8 33 21-54 8-41 (124)
165 PRK10964 ADP-heptose:LPS hepto 20.1 2.2E+02 0.0047 24.8 5.1 41 24-64 2-46 (322)
166 PF04227 Indigoidine_A: Indigo 20.1 1.6E+02 0.0034 26.4 4.1 62 135-199 141-208 (293)
167 PRK06194 hypothetical protein; 20.1 1.6E+02 0.0035 24.7 4.2 15 187-201 237-251 (287)
168 KOG4127 Renal dipeptidase [Pos 20.0 1.3E+02 0.0029 27.8 3.7 58 134-199 265-328 (419)
169 TIGR01369 CPSaseII_lrg carbamo 20.0 7.6E+02 0.017 25.8 9.7 36 22-57 6-49 (1050)
No 1
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=100.00 E-value=1.4e-59 Score=392.84 Aligned_cols=207 Identities=89% Similarity=1.424 Sum_probs=193.8
Q ss_pred CCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEecccccccc
Q 028187 5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATW 84 (212)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~ 84 (212)
||-|-.-++|-++.+.+++||++|+|||+++||++++++.|++|++|+|+||++|.+|++++.|....++|+|.++|+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~IllgVtGSIAAyk~~~lvr~L~~g~~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~ 81 (209)
T PLN02496 2 EPLSPEVDAMEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSW 81 (209)
T ss_pred CCcCCCccchhhccCCCCCEEEEEEeCHHHHHHHHHHHHHhcCCCeEEEEEChhHhhhcCHHHcCCCCcEEeCccccccc
Confidence 56666778899999999999999999999999999999999888999999999999999999987545789998888777
Q ss_pred ccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHC
Q 028187 85 NKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL 164 (212)
Q Consensus 85 ~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~ 164 (212)
+..+.+.+|++|.+|||+|||+|||+|||||+|+|||||++++++++++.++|++++|+||+.||+||++|+||++|+++
T Consensus 82 ~~~~~~~~HI~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~ 161 (209)
T PLN02496 82 NKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDEL 161 (209)
T ss_pred ccCCCCcchhHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHC
Confidence 66667889999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCCC
Q 028187 165 GISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211 (212)
Q Consensus 165 G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~~ 211 (212)
|++|++|..|.++||++|.|||+++++|++.+..+++.+++++++-|
T Consensus 162 G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~~~~~~~~~~ 208 (209)
T PLN02496 162 GISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLESRAQSQSGGV 208 (209)
T ss_pred CCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCC
Confidence 99999999999999999999999999999999999999999998865
No 2
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=100.00 E-value=1.6e-53 Score=351.31 Aligned_cols=175 Identities=37% Similarity=0.500 Sum_probs=161.3
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRRW 99 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~ 99 (212)
|||++|+|||+++++++++++.|++ |++|+|++|++|++|++++.++ ++++++++...+. .....+|+++.+|
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~----~~~~~~hi~l~~~ 77 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDVMDEH----DPKLMNHIELAKR 77 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHHhCCceEecccccc----ccCCccccccccc
Confidence 6899999999999999999999986 9999999999999999988765 5678888753322 1235689999999
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 179 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g 179 (212)
+|+|||+|||+|||||+|+||+|||+++++.+++.++|++++|+||+.||.||++++|+++|+++|++|++|.+|+++||
T Consensus 78 aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~ 157 (182)
T PRK07313 78 ADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACG 157 (182)
T ss_pred cCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHhhc
Q 028187 180 DYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 180 ~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
++|||+|+++|+|++++.++++
T Consensus 158 ~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 158 DEGYGALADIETILETIENTLK 179 (182)
T ss_pred CccCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998875
No 3
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=5.9e-53 Score=346.59 Aligned_cols=173 Identities=35% Similarity=0.542 Sum_probs=157.5
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRRW 99 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~ 99 (212)
|||+||+|||+++++++++++.|++ |++|++++|++|++|++++.++ ++++++++. |..+ ......|+++.+|
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~--~~~~--~~~~~~hi~l~~~ 76 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDV--MDEH--DPKVINHIELAKK 76 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhCCCeEeec--cccc--cCCCcccceechh
Confidence 5899999999999999999999986 8999999999999999988765 567777763 2111 1234679999999
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 179 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g 179 (212)
+|+|||+|||+|||||+|+||+|||+++++++++.++|++++|+||+.||+||++|+|+++|+++|++|++|..|.++||
T Consensus 77 aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g 156 (177)
T TIGR02113 77 ADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACG 156 (177)
T ss_pred hCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCC
Confidence 99999999999999999999999999998889888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHh
Q 028187 180 DYGNGAMAEPSLIYSTVRLF 199 (212)
Q Consensus 180 ~~g~g~~~~~~~i~~~v~~~ 199 (212)
++|.|||+++++|++++++.
T Consensus 157 ~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 157 DYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CccccCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 4
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-51 Score=334.47 Aligned_cols=192 Identities=54% Similarity=0.864 Sum_probs=177.7
Q ss_pred hhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhc--C---CeEEEEecccHHHHhccccCCCCCeeEeccccccccc
Q 028187 11 REAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE--W---AEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWN 85 (212)
Q Consensus 11 ~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~--g---~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~ 85 (212)
|.-+-.....++.+||+|.|||++++|++.+++.|.+ | ..|+|++|++|.+|+..+.+.....+|+|.++|..|+
T Consensus 9 ~~~~~~~~~d~K~hvL~gaTGSvA~iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~ 88 (218)
T KOG0672|consen 9 RTDKEVPQDDGKFHVLLGATGSVAVIKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWK 88 (218)
T ss_pred CcCccccCCCCceeEEEEeccccceeehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhh
Confidence 4444455567788999999999999999999999965 4 4799999999999999888877788999999999999
Q ss_pred cCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH--
Q 028187 86 KIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE-- 163 (212)
Q Consensus 86 ~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~-- 163 (212)
..+.|+-|++|.+|||+++|||.||||+||+|+||||||+|+++|||+..+|++++|+||+.||+||.+++|+..|++
T Consensus 89 ~r~dpVLHIeLRrWADilliAPLsANTlaKiA~GlCDNLLTsviRAW~~skPil~aPaMnT~mw~np~T~~hl~~l~~~~ 168 (218)
T KOG0672|consen 89 SRSDPVLHIELRRWADILLIAPLSANTLAKIANGLCDNLLTSVIRAWDPSKPILLAPAMNTLMWNNPMTKKHLTSLKEEY 168 (218)
T ss_pred hcCCceeeehHhhhhhhheecccCcchHHHHHhhhhhHHHHHHHHHhccCCceEeccchhhhhhcCcchHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028187 164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES 202 (212)
Q Consensus 164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~ 202 (212)
.|+++++|+.+.+.|||+|.|.|++|.+|++.|+..+..
T Consensus 169 ~~~~~i~pieK~licGDiGlG~Mae~~~IV~~V~~~~~~ 207 (218)
T KOG0672|consen 169 PGITVIKPIEKVLICGDIGLGGMAEWGTIVSKVRRKLGE 207 (218)
T ss_pred CCcEEecchheeEeccccCccccccHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999866653
No 5
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=100.00 E-value=6.4e-50 Score=364.50 Aligned_cols=186 Identities=38% Similarity=0.608 Sum_probs=169.1
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccc
Q 028187 19 GLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIE 95 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~ 95 (212)
.++++||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++ ++++||++. |.. ..+.+.+|++
T Consensus 3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~--~~~--~~~~~~~hi~ 78 (399)
T PRK05579 3 MLAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPVSTDL--WDP--AAEAAMGHIE 78 (399)
T ss_pred CCCCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhCCceEccc--ccc--ccCCCcchhh
Confidence 35678999999999999999999999986 9999999999999999999876 567888763 321 1223578999
Q ss_pred ccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc
Q 028187 96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR 175 (212)
Q Consensus 96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~ 175 (212)
+.+|+|+|||||||+|||||+|+||||||+++++.+. ++|++++|+||+.||+||++++|+++|+++|++|++|.+|+
T Consensus 79 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~--~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~ 156 (399)
T PRK05579 79 LAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLAT--TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGR 156 (399)
T ss_pred cccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhc--CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCcc
Confidence 9999999999999999999999999999999988774 89999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028187 176 LACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK 210 (212)
Q Consensus 176 la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~ 210 (212)
|+||++|.|||+++++|++++.+.+..++|+||+-
T Consensus 157 la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~v 191 (399)
T PRK05579 157 LACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRV 191 (399)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEE
Confidence 99999999999999999999999887788999863
No 6
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=7e-50 Score=369.38 Aligned_cols=187 Identities=34% Similarity=0.518 Sum_probs=169.3
Q ss_pred cCCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccc
Q 028187 18 TGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHI 94 (212)
Q Consensus 18 ~~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~ 94 (212)
+.+.+|||++|+|||+++||++++++.|++ |++|+|+||++|.+|++++.++ ++++||+|. |.. .....++|+
T Consensus 66 ~~l~~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~--~~~--~~~~~~~Hi 141 (475)
T PRK13982 66 ASLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVYTDL--FDP--ESEFDAGHI 141 (475)
T ss_pred cccCCCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcCCceEecC--CCc--ccccCccch
Confidence 457789999999999999999999999986 9999999999999999998875 678899774 211 111247899
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 174 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g 174 (212)
++.+|+|+|||||||+|||||+|+||||||+++++++ .++|++++|+||+.||+||++|+|+++|+++|++|++|..|
T Consensus 142 ~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La--~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g 219 (475)
T PRK13982 142 RLARDCDLIVVAPATADLMAKMANGLADDLASAILLA--ANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAG 219 (475)
T ss_pred hhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHh--cCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCC
Confidence 9999999999999999999999999999999988877 58999999999999999999999999999999999999999
Q ss_pred ccc-cCCCCCCCCCChHHHHHHHHHhhcC---CCCCCCCC
Q 028187 175 RLA-CGDYGNGAMAEPSLIYSTVRLFAES---RNQSGDGK 210 (212)
Q Consensus 175 ~la-~g~~g~g~~~~~~~i~~~v~~~~~~---~~l~~~~~ 210 (212)
.++ ||++|.|||++|++|++++.+++.. ++|+|||-
T Consensus 220 ~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkv 259 (475)
T PRK13982 220 EMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRV 259 (475)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEE
Confidence 999 7999999999999999999988854 67999974
No 7
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=1.9e-47 Score=347.27 Aligned_cols=184 Identities=35% Similarity=0.574 Sum_probs=164.1
Q ss_pred CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028187 20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL 96 (212)
Q Consensus 20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l 96 (212)
++++||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++ ++++++++. |.. ......|+++
T Consensus 1 l~~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~~~~~v~~~~--~~~---~~~~~~hi~l 75 (390)
T TIGR00521 1 LENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVTEL--WGP---IEHNALHIDL 75 (390)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHhhCCceeehh--ccc---cccccchhhc
Confidence 3578999999999999999999999986 9999999999999999999776 466777663 321 1111229999
Q ss_pred cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028187 97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 176 (212)
Q Consensus 97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l 176 (212)
.+|+|+|||+|||+|||||+|+||||||+++++.+. .+|++++|+||..||+||++++|+++|++.|++|++|.+|+|
T Consensus 76 ~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~--~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ 153 (390)
T TIGR00521 76 AKWADLILIAPATANTISKIAHGIADDLVSTTALAA--SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLL 153 (390)
T ss_pred ccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHh--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCccc
Confidence 999999999999999999999999999999887774 389999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhhcC-CCCCCCCC
Q 028187 177 ACGDYGNGAMAEPSLIYSTVRLFAES-RNQSGDGK 210 (212)
Q Consensus 177 a~g~~g~g~~~~~~~i~~~v~~~~~~-~~l~~~~~ 210 (212)
+||++|.|+|+++++|++++.+.+.. ++|+||+-
T Consensus 154 ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~v 188 (390)
T TIGR00521 154 ACGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRV 188 (390)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHhhccccCCceE
Confidence 99999999999999999999988875 78999873
No 8
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=100.00 E-value=6.2e-41 Score=278.51 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=141.5
Q ss_pred CCCCeEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhccc--------cCC--CCCeeEeccccccccccC
Q 028187 20 LRKPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKI 87 (212)
Q Consensus 20 ~~~~kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~--------~l~--~~~~v~~d~~~~~~~~~~ 87 (212)
++++||++|+|||+++|| ++++++.|++ |++|++++|++|.+|+.+. .++ ++++++++. |
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls~~~v~~~~--~------ 74 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEEITGNKVINTI--V------ 74 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHHHHCCCcEEec--C------
Confidence 467899999999999999 7999999986 9999999999999998642 122 345566542 1
Q ss_pred CCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHh-hcCCCcEEEEeccChhhhhChHHHHHHHHHHH-CC
Q 028187 88 GDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE-LG 165 (212)
Q Consensus 88 ~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~-~G 165 (212)
..+|+++.+|+|+|||||||+|||||+|+|||||++++++.+ ++.++|++++|+||+.||+|| +|+++|++ .|
T Consensus 75 --~~~~isls~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~---~ni~~L~~~~g 149 (196)
T PRK08305 75 --EAEPLGPKKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNA---KNLGRLLNTKN 149 (196)
T ss_pred --CCccCccccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCH---HHHHHHHhcCC
Confidence 145788999999999999999999999999999999987655 678999999999999999997 99999985 89
Q ss_pred CEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028187 166 ISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS 206 (212)
Q Consensus 166 ~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~ 206 (212)
++|+|= |.-.|+.--++-..+++.+.++++++++++|||
T Consensus 150 ~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (196)
T PRK08305 150 IYFVPF--GQDDPVKKPNSLVARMDLLIDTVEEALEGKQLQ 188 (196)
T ss_pred EEEEec--CCCCCCCCchhHHhhHHhhHHHHHHHHhCCccc
Confidence 999862 111121111455679999999999999999987
No 9
>PRK05920 aromatic acid decarboxylase; Validated
Probab=100.00 E-value=4.9e-40 Score=275.04 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=139.9
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccc
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELR 97 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~ 97 (212)
+++||++|+|||++++|++++++.|++ |++|++++|++|++|++++.+. ...+++++. .|..+ ......|+++.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~~~~~~l~~~~v~~~~-~~~~~--~~~~~~hi~l~ 78 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVLATETGLKLPAVPDLAEA-FLREQ--LGAAAGQLRVH 78 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHHHhCCCCCCCeeecch-hhhhc--cccccCceeEc
Confidence 468999999999999999999999986 9999999999999999987665 345677663 12211 11234555553
Q ss_pred -------------ccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH
Q 028187 98 -------------RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE 163 (212)
Q Consensus 98 -------------~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~ 163 (212)
+|+|+|||+|||+|||||+|+||||||+++++ .+++.++|++++|+ .||.||++++|+++|++
T Consensus 79 ~~~d~~a~~~sgs~~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~---~m~~~~~~~~nl~~L~~ 155 (204)
T PRK05920 79 GKDDWGAPIASGSFRTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPR---ETPLSLIHLENMLKLAE 155 (204)
T ss_pred ccccccCccccCccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeC---CCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999755 45668999999997 48999999999999999
Q ss_pred CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHH
Q 028187 164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197 (212)
Q Consensus 164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~ 197 (212)
.|++|++|++|+ |+++.+.+++++|+.
T Consensus 156 ~G~~ii~P~~g~-------y~~p~~~~~~~~f~~ 182 (204)
T PRK05920 156 AGAIILPAIPAF-------YHKPQTIDDLVDFVV 182 (204)
T ss_pred CCCEEeCCcccc-------cCCCCCHHHHHHHHH
Confidence 999999999999 899999999999984
No 10
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=100.00 E-value=4.9e-40 Score=271.45 Aligned_cols=155 Identities=23% Similarity=0.200 Sum_probs=131.3
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccHHHHhcccc-C-----C-CCCeeEeccccccccccCCCcccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAA-L-----P-KDVIFYTDEDEWATWNKIGDSVLH 93 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA~~~i~~~~-l-----~-~~~~v~~d~~~~~~~~~~~~~~~h 93 (212)
+||++|+|||+++||++++++.|++ |++|+|++|++|.+|++++. + . -..+++.+.+ . ..|
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~~~~~~~~~~~l~~~v~~~~~-------~---~~~ 71 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAARQTLAHETDFSLRDVQALADVVHDVRD-------I---GAS 71 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHHHCCChhhHHHhcCcccChhh-------c---ccC
Confidence 6899999999999999999999976 79999999999999999872 1 1 0122332211 1 135
Q ss_pred cccc-ccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 028187 94 IELR-RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 171 (212)
Q Consensus 94 ~~l~-~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P 171 (212)
++.. .|+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+ .||+||++|+|+++|++.|+.|++|
T Consensus 72 i~~~s~~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~---~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 72 IASGSFGTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR---ETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred hhhcCchhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec---cccCCHHHHHHHHHHHHCcCEEECC
Confidence 5553 59999999999999999999999999999744 34557999999996 6999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCChHHHHHHHH
Q 028187 172 VSKRLACGDYGNGAMAEPSLIYSTVR 197 (212)
Q Consensus 172 ~~g~la~g~~g~g~~~~~~~i~~~v~ 197 (212)
.+|+ |.++.+.+|+++|+.
T Consensus 149 ~~g~-------~a~p~~~~~~~~~~v 167 (185)
T PRK06029 149 VPAF-------YHRPQTLEDMVDQTV 167 (185)
T ss_pred Cccc-------ccCCCCHHHHHHHHH
Confidence 9999 899999999999985
No 11
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-39 Score=294.51 Aligned_cols=182 Identities=38% Similarity=0.569 Sum_probs=165.3
Q ss_pred CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028187 20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL 96 (212)
Q Consensus 20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l 96 (212)
+.+|+|+|++|||+++||.+++++.|.+ |++|+|+||++|.+|++|+.++ +++++++ . |. +..+..++|++|
T Consensus 2 l~~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~s~~~v~t-~--~~--~~~~~~~~HI~l 76 (392)
T COG0452 2 LEGKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPVYT-L--LD--EELTGSVEHIEL 76 (392)
T ss_pred CCCceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHhhCCCccc-c--cc--ccccccccHhhh
Confidence 4567999999999999999999999986 9999999999999999999987 7888887 2 21 233456899999
Q ss_pred cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028187 97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 176 (212)
Q Consensus 97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l 176 (212)
++|+|+++|+|+|+||++|+|+|++||++++++.++ ..|++++|+||..||+||++|+|+++|+..|+.++.|..|.+
T Consensus 77 ~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~--~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~ 154 (392)
T COG0452 77 ARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGEL 154 (392)
T ss_pred hhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHh--cCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECcccccc
Confidence 999999999999999999999999999998877775 349999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028187 177 ACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK 210 (212)
Q Consensus 177 a~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~ 210 (212)
+ +.|.|+|+++++|+..+...+..++|+||+-
T Consensus 155 a--~~g~g~~~e~~~Iv~~~~~~~~~~~l~gk~V 186 (392)
T COG0452 155 A--DVGDGRLAEPEEIVEAALALLKTPDLKGKKV 186 (392)
T ss_pred c--ccccccCCCHHHHHHHHHhhcccccccCcEE
Confidence 8 8999999999999999998888778999874
No 12
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=100.00 E-value=3.2e-39 Score=266.01 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=130.7
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhcccc-C--CCCCeeEeccccccccccCCCcccccc-ccc
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA-L--PKDVIFYTDEDEWATWNKIGDSVLHIE-LRR 98 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~-l--~~~~~v~~d~~~~~~~~~~~~~~~h~~-l~~ 98 (212)
||++|+|||+++||++++++.|++ |++|+|++|++|++|++++. + ..-..++++ .|. . .+...|++ ..+
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~e~~~~~~~l~~~~~~--~~~---~-~~~~~~i~~~s~ 74 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIKYETDIDPGEVEELATK--YYD---A-DDFAAPIASGSF 74 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHHCCCHHHHHHHhhh--hCC---C-cccccccccCCc
Confidence 689999999999999999999986 99999999999999998653 1 100011111 110 0 11235665 368
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccc
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLA 177 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la 177 (212)
|+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+ .||.||++|+|+++|+++|++|++|++|+
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~---~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~-- 149 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR---ETPLNSIHLENMLRLSRMGAIILPPMPAF-- 149 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC---CCcCCHHHHHHHHHHHHCCCEEECCCCcc--
Confidence 9999999999999999999999999999854 35668999999996 88999999999999999999999999999
Q ss_pred cCCCCCCCCCChHHHHHHHH
Q 028187 178 CGDYGNGAMAEPSLIYSTVR 197 (212)
Q Consensus 178 ~g~~g~g~~~~~~~i~~~v~ 197 (212)
|+++.+++++++|+.
T Consensus 150 -----~~~p~~~~~~~~~i~ 164 (181)
T TIGR00421 150 -----YTRPKSVEDMIDFIV 164 (181)
T ss_pred -----cCCCCCHHHHHHHHH
Confidence 999999999888884
No 13
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=100.00 E-value=5.4e-38 Score=259.43 Aligned_cols=164 Identities=23% Similarity=0.229 Sum_probs=134.9
Q ss_pred CeEEEEeeChhHHHHHH-HHHHHhhc-CCeEEEEecccHHHHhccc--------cCC--CCCeeEeccccccccccCCCc
Q 028187 23 PRILLAASGSVAAIKFG-NLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKIGDS 90 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~-~li~~L~~-g~~V~vvlT~sA~~~i~~~--------~l~--~~~~v~~d~~~~~~~~~~~~~ 90 (212)
+||++|+|||+++++++ ++++.|++ |++|++++|++|.++.+.. .++ ++++++++..++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~~~g~~~~~i~~l~~~tg~~v~~~~~~~--------- 71 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEITGRPAINTIVEA--------- 71 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHHHcCChHHHHHHHHHHHCCCCEEECCCC---------
Confidence 58999999999999997 99999986 9999999999999655531 122 345555543111
Q ss_pred cccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhh-cCCCcEEEEeccChhhhhChHHHHHHHHHH-HCCCEE
Q 028187 91 VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFTERHLMSID-ELGISL 168 (212)
Q Consensus 91 ~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~-~~G~~v 168 (212)
+.++..+|+|+|||||||+|||||+|+||+|||+++++.++ +.++|++++|+||+.||+|+ +|+++|. .+|++|
T Consensus 72 -~~~~~s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~---~Ni~~L~~~~g~~~ 147 (187)
T TIGR02852 72 -EPFGPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA---VNLMRLLNTKNIYF 147 (187)
T ss_pred -cccCCchhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH---HHHHHHHHcCCEEE
Confidence 11233579999999999999999999999999999877665 78999999999999999997 9999985 899999
Q ss_pred eC-----CCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028187 169 IP-----PVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS 206 (212)
Q Consensus 169 v~-----P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~ 206 (212)
|| |..+. ++-.++++.|.+++.++++++|+|
T Consensus 148 v~f~qd~~~~k~-------~s~~~~~~~~~~~~~~a~~~~q~q 183 (187)
T TIGR02852 148 VPFGQDDPFKKP-------NSLVAKMDYLIPTIEEALQGRQLQ 183 (187)
T ss_pred EeecCCCCCCCc-------hhHHhhHHhhHHHHHHHHhCCCcC
Confidence 97 33333 466789999999999999999987
No 14
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=100.00 E-value=3e-36 Score=235.23 Aligned_cols=127 Identities=49% Similarity=0.744 Sum_probs=107.8
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccccccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD 101 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~aD 101 (212)
|||++++|||++++++++++++|++ |++|++++|++|.+|++++. ....+++.+ |..+ ......+|+++.+|+|
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~-~~~~~v~~~---~~~~-~~~~~~~~~~~~~~~D 75 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEG-LTGEPVYTD---WDTW-DRGDPAEHIELSRWAD 75 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHG-HCCSCEECT---HCTC-STTTTTCHHHHHHTES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhc-cccchhhhc---cccC-CCCCCcCcccccccCC
Confidence 6999999999999999999999987 89999999999999999988 345677766 2111 1234678999999999
Q ss_pred EEEEccCCHHHHHHHHccccCcHHHHHHHhh-cCCCcEEEEeccChhhhhChHH
Q 028187 102 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFT 154 (212)
Q Consensus 102 ~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~Pamn~~m~~~P~~ 154 (212)
+|||+|||+||+||+|+||+||++++++.++ +.++|++++|+||+.||+||++
T Consensus 76 ~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn~~m~~~p~t 129 (129)
T PF02441_consen 76 AMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMNPAMWENPIT 129 (129)
T ss_dssp EEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEESHHHHTSHHH
T ss_pred EEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCCHHHHhCcCC
Confidence 9999999999999999999999999877665 6699999999999999999975
No 15
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=99.97 E-value=2.1e-30 Score=210.95 Aligned_cols=161 Identities=26% Similarity=0.295 Sum_probs=133.3
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhcccc--CCCCCeeEeccccccccccCCCccccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA--LPKDVIFYTDEDEWATWNKIGDSVLHIELRR 98 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~--l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~ 98 (212)
++||++|+||++++.+..++++.|++ ++|+++++|++|.+.+..|. ..+...+.......+..++++++++++++.
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~~~e~hlviS~~a~~~~~~E~~~~~~~~~~~~~a~~~~~~~D~~A~iASGS~~- 80 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKKTLKYETGNDESLGEVLALADVVHDEKDIGAPIASGSFR- 80 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhcCceEEEEEcHHHHHHHHHHhCcchhhHHHhhhcceecCHHHccCcccCCCCC-
Confidence 56899999999999999999999986 89999999999999988776 211111111111112234567788999975
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHH---HHHHCCCEEeCCCCc
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLM---SIDELGISLIPPVSK 174 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~---~L~~~G~~vv~P~~g 174 (212)
.|.|+|+|||+.|+|+||+|++|||++.+. -+++.++|+|++|+ |.|....||+ +|.+.|++|+||.++
T Consensus 81 -~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~R------EtPl~~ihLeNMlkl~~~GaiI~Pp~Pa 153 (191)
T COG0163 81 -TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPR------ETPLSLIHLENMLKLAEMGAIIMPPMPA 153 (191)
T ss_pred -cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEec------cCCccHHHHHHHHHHHHCCCEecCCChh
Confidence 999999999999999999999999999754 45578999999999 9998777777 578899999999999
Q ss_pred ccccCCCCCCCCCChHHHHHHHH
Q 028187 175 RLACGDYGNGAMAEPSLIYSTVR 197 (212)
Q Consensus 175 ~la~g~~g~g~~~~~~~i~~~v~ 197 (212)
| |.++.+.|||++|+.
T Consensus 154 F-------Y~~P~sieDlvd~~v 169 (191)
T COG0163 154 F-------YHKPQSIEDLVDFVV 169 (191)
T ss_pred h-------hcCCCCHHHHHHHHH
Confidence 9 999999999999985
No 16
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=99.96 E-value=6.6e-29 Score=203.19 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=108.6
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhh-c-CCeEEEEecccHHHHhccccC-C--CCCe--eEeccccccccccCCCcccccc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFS-E-WAEVRAVATKSSLHFIDRAAL-P--KDVI--FYTDEDEWATWNKIGDSVLHIE 95 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~-~-g~~V~vvlT~sA~~~i~~~~l-~--~~~~--v~~d~~~~~~~~~~~~~~~h~~ 95 (212)
||+||+|||..... ..++++.|+ + |++|++++|++|.+|++++.+ + .+.. ++.+. + +..+ ....|+.
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~~~~~~l~~~~~~~~~~~-~---~~~p-~~sg~~~ 75 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWYKLWDKLENDFPNFRVEI-N---ANSP-FLAGQLQ 75 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHHHhHHHHhccCCcccccC-C---CCCc-cccCccc
Confidence 69999999955544 888999886 3 899999999999999987754 2 1111 22111 1 1111 1245777
Q ss_pred ccccccEEEEccCCHHHHHHHHccccCcHHHHH-HHhhcCCCcEEEEeccCh------hhhhChHHH--------HHHHH
Q 028187 96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCI-VRAWDYNKPLFVAPAMNT------FMWNNPFTE--------RHLMS 160 (212)
Q Consensus 96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~-~~a~~~~~Pvvi~Pamn~------~m~~~P~~~--------~nl~~ 160 (212)
+. |+|+|+|+|||+||+||+|+||||||++++ +.+++.++|++++|+||. .+-.+|.++ +|+++
T Consensus 76 l~-~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~ 154 (174)
T TIGR02699 76 MG-KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEK 154 (174)
T ss_pred cc-ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHH
Confidence 75 689999999999999999999999999875 466688999999999974 355567777 99999
Q ss_pred HHHC-CCEEeC
Q 028187 161 IDEL-GISLIP 170 (212)
Q Consensus 161 L~~~-G~~vv~ 170 (212)
|+++ |++|+.
T Consensus 155 L~~~~gv~v~~ 165 (174)
T TIGR02699 155 LAQMEGIEILT 165 (174)
T ss_pred HhhCCCeEEEC
Confidence 9997 999985
No 17
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=99.91 E-value=3.2e-24 Score=183.18 Aligned_cols=117 Identities=21% Similarity=0.306 Sum_probs=91.9
Q ss_pred eEEEEeeChhHH-HHHHHHHHHhhc---CCeEEEEecccHHHHhcccc----CC--CCCeeEeccccccccccC-CC-cc
Q 028187 24 RILLAASGSVAA-IKFGNLCHCFSE---WAEVRAVATKSSLHFIDRAA----LP--KDVIFYTDEDEWATWNKI-GD-SV 91 (212)
Q Consensus 24 kilv~vTGs~~a-~~~~~li~~L~~---g~~V~vvlT~sA~~~i~~~~----l~--~~~~v~~d~~~~~~~~~~-~~-~~ 91 (212)
||+||+|||+.+ ++++++++.|++ |++|+|+||++|.+|++++. |+ +++++|++. |..-.+. .. ..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~ 78 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYGLWDDLREISPGGYYEEV--FTESEEGASSPII 78 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhhhHHHHHHHhCCCcchhc--cccccccccCCcc
Confidence 689999996555 789999999974 79999999999999999984 32 356677652 2100111 11 24
Q ss_pred ccccccccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEec
Q 028187 92 LHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPA 143 (212)
Q Consensus 92 ~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pa 143 (212)
.|+++.+ +|+|||+|||+|||||||+||+||++++.+ .+.+..+|++++|+
T Consensus 79 ~~i~~~~-~D~~vIaPaTantlakiA~GiaD~lit~t~~~~~k~~~pv~~vP~ 130 (234)
T TIGR02700 79 GRFALGK-YDLLIVSPATANTVAKIAHGIADSLVTNAVAQAGKGDVPVWVVPV 130 (234)
T ss_pred ceeeccc-cCEEEEecCChhHHHHHHccccchHHHHHHHHHhccCCCeEEEee
Confidence 6998874 899999999999999999999999998754 55567899999997
No 18
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=99.80 E-value=1.8e-19 Score=144.16 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=105.9
Q ss_pred CCCCCeEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhccccCC-----CCCeeEeccccccccccCCC
Q 028187 19 GLRKPRILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDRAALP-----KDVIFYTDEDEWATWNKIGD 89 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~~~~l~-----~~~~v~~d~~~~~~~~~~~~ 89 (212)
...++||.||+||+..-+. .-++.+.+++ +++|.+++|++|.+++..+.|- ....+..+.. ..+
T Consensus 5 ~~~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~YgL~~~l~~~~~~~~~e~~-------ans 77 (187)
T COG1036 5 EKKKKRIAWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKMYGLWDKLEKIFGGLEVEIG-------ANS 77 (187)
T ss_pred ccccceEEEEEeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHHHHHHHHHHHHHcCCeEeecC-------CCC
Confidence 3456799999999965554 5556777764 3799999999999999877652 1111222211 112
Q ss_pred c--cccccccccccEEEEccCCHHHHHHHHccccCcHHHH-HHHhhcCCCcEEEEeccCh--------------hhhhCh
Q 028187 90 S--VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAPAMNT--------------FMWNNP 152 (212)
Q Consensus 90 ~--~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~Pamn~--------------~m~~~P 152 (212)
| ...+++. .+|+++|+|||+||+||||+||||+|+|+ +.+|.+...|++++|.-.. .|.-..
T Consensus 78 Pfi~GrlqlG-kYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~ 156 (187)
T COG1036 78 PFIAGRLQLG-KYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRK 156 (187)
T ss_pred Cceecceecc-cccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEecccccCCeEEEcCCCCcEEEEEEee
Confidence 2 2345554 69999999999999999999999999998 5688788999999998653 244455
Q ss_pred HHHHHHHHHHH-CCCEEeC
Q 028187 153 FTERHLMSIDE-LGISLIP 170 (212)
Q Consensus 153 ~~~~nl~~L~~-~G~~vv~ 170 (212)
...+|+++|++ .|+.|+.
T Consensus 157 vDvenv~kl~~megi~Vl~ 175 (187)
T COG1036 157 VDVENVEKLAQMEGIEVLA 175 (187)
T ss_pred cchHHHHHHHhccCeEEec
Confidence 67899999977 4887763
No 19
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=98.30 E-value=3e-06 Score=71.47 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=59.8
Q ss_pred ccccEEEEccCCHHHHHHHHccccCcHHHH-HHHhhcCCCcEEEEe-ccChhhhhC--h-----HHHHHHHHHHHCCCEE
Q 028187 98 RWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAP-AMNTFMWNN--P-----FTERHLMSIDELGISL 168 (212)
Q Consensus 98 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~P-amn~~m~~~--P-----~~~~nl~~L~~~G~~v 168 (212)
+.+|.++|.=.|.|+++|+|+|++||+.++ ++.++-.++||+++= ++...-|.+ | ..+.+.++|+++|+.|
T Consensus 52 ~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~ 131 (207)
T TIGR02536 52 KLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEF 131 (207)
T ss_pred hcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEE
Confidence 568999999999999999999999999887 567777899999883 222222233 2 4678899999999999
Q ss_pred eCCC
Q 028187 169 IPPV 172 (212)
Q Consensus 169 v~P~ 172 (212)
+...
T Consensus 132 ~~~~ 135 (207)
T TIGR02536 132 IDSE 135 (207)
T ss_pred eccc
Confidence 8753
No 20
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.94 E-value=19 Score=32.16 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=55.9
Q ss_pred ccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028187 94 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 173 (212)
Q Consensus 94 ~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~ 173 (212)
.++..++|.++|-+=|.|.++ +|..+++||.+++--. .+.-+++-++.|.+.|+.-.-...
T Consensus 223 ~~~La~ad~i~VT~DSvSMvs---------------EA~~tG~pV~v~~l~~----~~~r~~r~~~~L~~~g~~r~~~~~ 283 (311)
T PF06258_consen 223 LGFLAAADAIVVTEDSVSMVS---------------EAAATGKPVYVLPLPG----RSGRFRRFHQSLEERGAVRPFTGW 283 (311)
T ss_pred HHHHHhCCEEEEcCccHHHHH---------------HHHHcCCCEEEecCCC----cchHHHHHHHHHHHCCCEEECCCc
Confidence 456668999999876665544 4555799999997521 555788888999999875332221
Q ss_pred cccccCCCC-CCCCCChHHHHHHHHHhh
Q 028187 174 KRLACGDYG-NGAMAEPSLIYSTVRLFA 200 (212)
Q Consensus 174 g~la~g~~g-~g~~~~~~~i~~~v~~~~ 200 (212)
..+. ... |-.+-+-+.+.+.|.+.+
T Consensus 284 ~~~~--~~~~~~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 284 RDLE--QWTPYEPLDETDRVAAEIRERL 309 (311)
T ss_pred cccc--ccccCCCccHHHHHHHHHHHHh
Confidence 1011 122 556667777888776654
No 21
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=83.99 E-value=2.3 Score=32.12 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=32.7
Q ss_pred EEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhccccC
Q 028187 25 ILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAAL 68 (212)
Q Consensus 25 ilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l 68 (212)
|++...|+.+=.. ...+.++|++ ||||.+..++...+.+....+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl 46 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGL 46 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCc
Confidence 5677777776666 7789999985 999998888888888754444
No 22
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=81.27 E-value=26 Score=28.95 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCcEEEEeccChhhhhChHH-HHHHHHHHHCCCEEeC
Q 028187 135 NKPLFVAPAMNTFMWNNPFT-ERHLMSIDELGISLIP 170 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~-~~nl~~L~~~G~~vv~ 170 (212)
+.++|+--+ .+|.+ .++-+.|++.|+.++|
T Consensus 107 ~~~~v~~~A------N~~~~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 107 KAKAIAGAA------NNQLADPRHGQMLHERGILYAP 137 (200)
T ss_pred CCCEEEECC------cCccCCHhHHHHHHHCCCEEeC
Confidence 568888888 77777 7999999999999997
No 23
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=79.24 E-value=14 Score=34.03 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=70.6
Q ss_pred CCCeEEEEeeChhHHH-HHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccccc
Q 028187 21 RKPRILLAASGSVAAI-KFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRW 99 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~-~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~ 99 (212)
..+++++..-||.... ....++-.+.++.+++||++-.+.+- +...++.+..+. + .+.+.++.+.
T Consensus 235 ~d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~-~~~~~p~n~~v~-~------------~~p~~~~l~~ 300 (406)
T COG1819 235 ADRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARD-TLVNVPDNVIVA-D------------YVPQLELLPR 300 (406)
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEecccccc-ccccCCCceEEe-c------------CCCHHHHhhh
Confidence 4456666666776643 12222222334678888888744222 111222111111 1 2345567777
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 179 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g 179 (212)
+|++|- ||=+.+... ++..++|+|++|.. ++.+ .|-+++.+.|+=+.=+.
T Consensus 301 ad~vI~------------hGG~gtt~e----aL~~gvP~vv~P~~----~DQ~---~nA~rve~~G~G~~l~~------- 350 (406)
T COG1819 301 ADAVIH------------HGGAGTTSE----ALYAGVPLVVIPDG----ADQP---LNAERVEELGAGIALPF------- 350 (406)
T ss_pred cCEEEe------------cCCcchHHH----HHHcCCCEEEecCC----cchh---HHHHHHHHcCCceecCc-------
Confidence 888763 333333322 33358999999984 4555 45667777765433221
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCC
Q 028187 180 DYGNGAMAEPSLIYSTVRLFAESR 203 (212)
Q Consensus 180 ~~g~g~~~~~~~i~~~v~~~~~~~ 203 (212)
...+.+.+.+.|++.+.++
T Consensus 351 -----~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 351 -----EELTEERLRAAVNEVLADD 369 (406)
T ss_pred -----ccCCHHHHHHHHHHHhcCH
Confidence 1335566666666666543
No 24
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=72.83 E-value=5.7 Score=34.27 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred CeEEEEeeChhH--HHHHHHHHHHhhcCCeEEEEecccHHHHhccc
Q 028187 23 PRILLAASGSVA--AIKFGNLCHCFSEWAEVRAVATKSSLHFIDRA 66 (212)
Q Consensus 23 ~kilv~vTGs~~--a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~ 66 (212)
+||++.++|... +.+...+++.| +|++|.++....+.+|+.+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-rg~~v~~~~~~~~~~~~~~~ 45 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-RGHEVTFITSGPAPEFLKPR 45 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-ccCceEEEEcCCcHHHhccc
Confidence 478888887543 44578899999 68999999999888888664
No 25
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=72.77 E-value=8.2 Score=33.87 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=33.2
Q ss_pred eEEEEeeChh--HHHHHHHHHHHhhcCCeEEEEecccHHHHhcccc
Q 028187 24 RILLAASGSV--AAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAA 67 (212)
Q Consensus 24 kilv~vTGs~--~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~ 67 (212)
||+++++|-. .+..+..++++|++|++|.++.+..+..++....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~g~ev~~~~~~~~~~~~~~~~ 46 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKNDYEVSYIASGRSKNYISKYG 46 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhCCCeEEEEEcCCHHHhhhhhc
Confidence 5677666543 5667888999987799999999998777776543
No 26
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=72.23 E-value=72 Score=28.47 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=86.9
Q ss_pred cchhhhhhccCCCCCeEEEEeeChhHHHH-----HHHHHHHhh----c-CCeEEEEecccHHHHhccc---cCCC-CCee
Q 028187 9 TDREAMQVNTGLRKPRILLAASGSVAAIK-----FGNLCHCFS----E-WAEVRAVATKSSLHFIDRA---ALPK-DVIF 74 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~kilv~vTGs~~a~~-----~~~li~~L~----~-g~~V~vvlT~sA~~~i~~~---~l~~-~~~v 74 (212)
+-||++.--..+.+.++.|.|.|...++- +..++..|. + |+.+-+..|+--..-+... .+.+ ...+
T Consensus 148 a~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~ 227 (329)
T COG3660 148 ALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIV 227 (329)
T ss_pred hhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeE
Confidence 45677776666677788888888776652 344444443 2 5566666655332222111 1111 1122
Q ss_pred EeccccccccccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHH
Q 028187 75 YTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFT 154 (212)
Q Consensus 75 ~~d~~~~~~~~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~ 154 (212)
|.+. + .+.-.-+++..|||.+|+.--|.| +.+ +|+.++|||.++-.-|.+...+..
T Consensus 228 w~~~-------d-~g~NPY~~~La~Adyii~TaDSin------------M~s---EAasTgkPv~~~~~~~~~s~K~r~- 283 (329)
T COG3660 228 WNNE-------D-TGYNPYIDMLAAADYIISTADSIN------------MCS---EAASTGKPVFILEPPNFNSLKFRI- 283 (329)
T ss_pred eCCC-------C-CCCCchHHHHhhcceEEEecchhh------------hhH---HHhccCCCeEEEecCCcchHHHHH-
Confidence 3221 1 122245677779999998733222 222 566689999888655554444444
Q ss_pred HHHHHHHHHCCCEEeCCCCcc-cccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 155 ERHLMSIDELGISLIPPVSKR-LACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 155 ~~nl~~L~~~G~~vv~P~~g~-la~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
-+++|.+.++ -.|-.|. ++--++-|--+-+-|.|.+.|+..++
T Consensus 284 --Fi~~L~eq~~--AR~f~~~~~~~e~ysy~PLnEt~RiA~~Ira~l~ 327 (329)
T COG3660 284 --FIEQLVEQKI--ARPFEGSNLALEEYSYKPLNETERIAEEIRAELG 327 (329)
T ss_pred --HHHHHHHhhh--ccccCcchhhhcccccCCchHHHHHHHHHHHHhC
Confidence 4444444321 2222221 11111224455678888888887764
No 27
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=67.74 E-value=48 Score=24.68 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=34.8
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHH-HHHHHHHHHCC
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFT-ERHLMSIDELG 165 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~-~~nl~~L~~~G 165 (212)
.+|++++.|=...-+.++.... .++||++.+...-++..-+.+ ..-++.++++|
T Consensus 50 ~~DviLl~Pqi~~~~~~i~~~~-------------~~~pV~~I~~~~Yg~~dg~~vl~~a~~~~~~~~ 104 (106)
T PRK10499 50 NADVVLLGPQIAYMLPEIQRLL-------------PNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAA 104 (106)
T ss_pred CCCEEEECHHHHHHHHHHHhhc-------------CCCCEEEEChHhhhcCCHHHHHHHHHHHHHHhc
Confidence 4799999999888777754321 136898887765555554443 34445556654
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=67.09 E-value=16 Score=31.36 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=41.8
Q ss_pred cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028187 97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 176 (212)
Q Consensus 97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l 176 (212)
...+|++|-.+ =.||++ .++-.++|++++|..+ ..|.. .|.+.|++.|+-++-+....
T Consensus 248 m~~ad~vIs~~-G~~t~~---------------Ea~~~g~P~l~ip~~~--~~EQ~---~~a~~l~~~G~~~~~~~~~~- 305 (318)
T PF13528_consen 248 MAAADLVISKG-GYTTIS---------------EALALGKPALVIPRPG--QDEQE---YNARKLEELGLGIVLSQEDL- 305 (318)
T ss_pred HHhCCEEEECC-CHHHHH---------------HHHHcCCCEEEEeCCC--CchHH---HHHHHHHHCCCeEEcccccC-
Confidence 34678877663 333332 3444699999999842 33333 57778999988755332221
Q ss_pred ccCCCCCCCCCChHHHHHHHHH
Q 028187 177 ACGDYGNGAMAEPSLIYSTVRL 198 (212)
Q Consensus 177 a~g~~g~g~~~~~~~i~~~v~~ 198 (212)
+++.+.+++++
T Consensus 306 -----------~~~~l~~~l~~ 316 (318)
T PF13528_consen 306 -----------TPERLAEFLER 316 (318)
T ss_pred -----------CHHHHHHHHhc
Confidence 56677766654
No 29
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=65.35 E-value=12 Score=30.08 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.5
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEe
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 55 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvl 55 (212)
||+||+|||....-...++..+++ +.++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~ 34 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVH 34 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 689999999999988888888864 56777665
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=62.79 E-value=1.2e+02 Score=27.55 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh-c---CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS-E---WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELR 97 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~-~---g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~ 97 (212)
.++.++.+.||.++..+-+++..+. + .++|....-+...+-+....-..+. +.... |. ...+ .+.
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~-----f~---~dm~--~~~ 250 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGV-VRVLP-----FI---DDMA--ALL 250 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCc-EEEee-----HH---hhHH--HHH
Confidence 4667777788888888777777664 2 2344444333322111100000111 11110 00 0111 344
Q ss_pred ccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHH-HHHHHHHCCCEEeCCCCccc
Q 028187 98 RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTER-HLMSIDELGISLIPPVSKRL 176 (212)
Q Consensus 98 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~-nl~~L~~~G~~vv~P~~g~l 176 (212)
.|+|++|-= +=++||+- ..-.++|.|++|.-+.. + --|. |-+.|.+.|.-.+=...-
T Consensus 251 ~~ADLvIsR-aGa~Ti~E---------------~~a~g~P~IliP~p~~~---~-~~Q~~NA~~l~~~gaa~~i~~~~-- 308 (357)
T COG0707 251 AAADLVISR-AGALTIAE---------------LLALGVPAILVPYPPGA---D-GHQEYNAKFLEKAGAALVIRQSE-- 308 (357)
T ss_pred HhccEEEeC-CcccHHHH---------------HHHhCCCEEEeCCCCCc---c-chHHHHHHHHHhCCCEEEecccc--
Confidence 688887754 33444443 11258999999983331 0 1334 778888876554433221
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 177 ACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 177 a~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
-+++++.+.+..++.
T Consensus 309 ----------lt~~~l~~~i~~l~~ 323 (357)
T COG0707 309 ----------LTPEKLAELILRLLS 323 (357)
T ss_pred ----------CCHHHHHHHHHHHhc
Confidence 257777777766664
No 31
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=62.18 E-value=19 Score=26.35 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEeccc
Q 028187 19 GLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~s 58 (212)
++++++++|.-.|..+..| ++.|.+ |++|+|+-.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k----~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARK----ARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHH----HHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHH----HHHHHhCCCEEEEECCch
Confidence 4678899888888888876 445544 89999998775
No 32
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=61.48 E-value=19 Score=25.85 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=25.6
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEE
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vv 54 (212)
.+||++++.|+.....+.++...+. . +.+|.++
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l 36 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLL 36 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 4799999999999998887766665 3 6676654
No 33
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=61.38 E-value=75 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=32.5
Q ss_pred HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 130 ~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
.++..++|+|++|... +.+ .|-+++.+.|+-+.-.. .. .+.++|.+.++..++
T Consensus 319 eal~~GvP~v~~P~~~----dQ~---~~a~~~~~~G~g~~l~~-----------~~-~~~~~l~~al~~~l~ 371 (401)
T cd03784 319 AALRAGVPQLVVPFFG----DQP---FWAARVAELGAGPALDP-----------RE-LTAERLAAALRRLLD 371 (401)
T ss_pred HHHHcCCCEEeeCCCC----CcH---HHHHHHHHCCCCCCCCc-----------cc-CCHHHHHHHHHHHhC
Confidence 3444699999999743 333 46667777775432211 11 367777777776654
No 34
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=57.99 E-value=17 Score=32.42 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=34.8
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhccccC
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAAL 68 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l 68 (212)
||++...|+.+=.. ...+.+.|++ ||+|+++.++.-..++....+
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~ 48 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGL 48 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCC
Confidence 77887777665554 8889999975 999999999987777765444
No 35
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=55.83 E-value=22 Score=28.29 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.4
Q ss_pred hhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEE
Q 028187 14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV 54 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vv 54 (212)
++...++.+++++|.-.|.++..++-.|++ .|++|+||
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VI 42 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKD---TGAFVTVV 42 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEE
Confidence 566678889999998888887766443332 38999998
No 36
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=55.45 E-value=23 Score=30.09 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 028187 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 171 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P 171 (212)
+.++|+=.+ ++|.+.+.-+.|++.|+.++|-
T Consensus 128 ~a~~I~egA------N~~~t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 128 KAKIIVEAA------NGPTTPEADEILHERGVLVVPD 158 (227)
T ss_pred eeeEEEeCC------CCCCCHHHHHHHHHCCCEEECh
Confidence 568888888 7888878888999999999974
No 37
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=54.73 E-value=7.9 Score=34.58 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=43.4
Q ss_pred cchhhhhhccCCC-CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhc
Q 028187 9 TDREAMQVNTGLR-KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFID 64 (212)
Q Consensus 9 ~~~~~~~~~~~~~-~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~ 64 (212)
+|.+++...-.+. +.-|++|+|.+.+.+-+.++.+++..+..|-+|+-+++.|+++
T Consensus 243 ~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 243 SDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLS 299 (300)
T ss_pred CHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccC
Confidence 4556666665554 3458999998888877888899888788999999999988764
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=54.34 E-value=21 Score=30.86 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=26.3
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEeccc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~s 58 (212)
||++.++|..+... +..+++.|++ |++|+++-.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 78877777666665 3489999986 99999996543
No 39
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=54.31 E-value=14 Score=34.03 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCeEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhcccc
Q 028187 22 KPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAA 67 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~ 67 (212)
++||++.++|+.+-.. ...+.++|++ ||+|+...++...+++....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag 48 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG 48 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC
Confidence 3689999999844443 7778899975 99999999999999988766
No 40
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=53.34 E-value=1.2e+02 Score=31.68 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=28.1
Q ss_pred hhhccCCCCCeEEEEeeChhHH-------HHHHHHHHHhhc-CCeEEEEecccH
Q 028187 14 MQVNTGLRKPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATKSS 59 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a-------~~~~~li~~L~~-g~~V~vvlT~sA 59 (212)
|+++++ .+||||.-+|++.. +...++++.|++ |++|.++=+..+
T Consensus 1 m~~~~~--~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~ 52 (1068)
T PRK12815 1 MPKDTD--IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPA 52 (1068)
T ss_pred CCCCCC--CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcc
Confidence 444444 34788877887633 234567888886 888877755443
No 41
>PRK09982 universal stress protein UspD; Provisional
Probab=53.26 E-value=24 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEE
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vv 54 (212)
-+|||+++-||..+.++.+....|. + +.+++++
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLI 37 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEE
Confidence 4789999999999999888776665 3 6666654
No 42
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=50.04 E-value=44 Score=29.26 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=44.3
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 174 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g 174 (212)
++...+|+++... | ..+++.++..++|+|..|.-.. .+.....+-+.+.+.|.-++-|.
T Consensus 248 ~~~~~~d~~i~~~-----------g-----~~~~~Ea~~~g~Pvv~~~~~~~---~~~~~~~~~~~i~~~~~g~~~~~-- 306 (357)
T PRK00726 248 AAYAAADLVICRA-----------G-----ASTVAELAAAGLPAILVPLPHA---ADDHQTANARALVDAGAALLIPQ-- 306 (357)
T ss_pred HHHHhCCEEEECC-----------C-----HHHHHHHHHhCCCEEEecCCCC---CcCcHHHHHHHHHHCCCEEEEEc--
Confidence 4455799988622 2 1234456667999999985110 11112234566766665433221
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhhcCC
Q 028187 175 RLACGDYGNGAMAEPSLIYSTVRLFAESR 203 (212)
Q Consensus 175 ~la~g~~g~g~~~~~~~i~~~v~~~~~~~ 203 (212)
...+++++.+.+..+++++
T Consensus 307 ----------~~~~~~~l~~~i~~ll~~~ 325 (357)
T PRK00726 307 ----------SDLTPEKLAEKLLELLSDP 325 (357)
T ss_pred ----------ccCCHHHHHHHHHHHHcCH
Confidence 1126888888888877653
No 43
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.67 E-value=25 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.6
Q ss_pred hhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEe
Q 028187 15 QVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55 (212)
Q Consensus 15 ~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvl 55 (212)
|...++.+++++|.-.|.++..++..+++ .|++|.|+-
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs 40 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVIS 40 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEc
Confidence 44556788999999899888776443333 388999884
No 44
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.63 E-value=28 Score=30.09 Aligned_cols=36 Identities=36% Similarity=0.311 Sum_probs=27.6
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccH
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSS 59 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA 59 (212)
||++..+|..+... +..+++.|.+ |++|.++.....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 57788777776666 6688999985 999998876543
No 45
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=48.46 E-value=42 Score=24.18 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=28.9
Q ss_pred CeEEEEee----ChhHHHHHHHHHHHhh-cC---CeEEEEecccHHHHhcc
Q 028187 23 PRILLAAS----GSVAAIKFGNLCHCFS-EW---AEVRAVATKSSLHFIDR 65 (212)
Q Consensus 23 ~kilv~vT----Gs~~a~~~~~li~~L~-~g---~~V~vvlT~sA~~~i~~ 65 (212)
|++++.+| ++........+...+. .+ .+|.++++..|.+++..
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHh
Confidence 47888888 5554555555555444 37 99999999999888765
No 46
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=47.50 E-value=34 Score=29.44 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 57 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~ 57 (212)
+.+|+||+|||.....+..++..+.+.+++.++.-+
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd 56 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVD 56 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEec
Confidence 479999999999999888888777532566655543
No 47
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=46.38 E-value=32 Score=27.52 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=26.1
Q ss_pred eEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEEecc
Q 028187 24 RILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVATK 57 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vvlT~ 57 (212)
||++++|||....-+..++..+. + +.+|.++.=+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 58999999999988888887764 3 6677766533
No 48
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=45.73 E-value=32 Score=28.68 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=65.5
Q ss_pred hhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCC-CC-CeeEeccccccccccCCCccc
Q 028187 15 QVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP-KD-VIFYTDEDEWATWNKIGDSVL 92 (212)
Q Consensus 15 ~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~-~~-~~v~~d~~~~~~~~~~~~~~~ 92 (212)
|...++.+++++|.-.|.++..++..+++ .|++|+|+-.+....+-. +. .+ ..+.... | .
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~---l~~~~~i~~~~~~-----~-------~ 63 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTL---LAEQGGITWLARC-----F-------D 63 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHH---HHHcCCEEEEeCC-----C-------C
Confidence 34456778899888888877766543333 389999886543222211 11 11 1111110 1 1
Q ss_pred cccccccccEEEEccCCH--H-HHHHHH--ccc----cCcHHHH-H-HHhhcCCCcEEEEeccChhhhhChHHHHHHHH
Q 028187 93 HIELRRWADIMVIAPLSA--N-TLGKIA--GGL----CDNLLTC-I-VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMS 160 (212)
Q Consensus 93 h~~l~~~aD~~vVaPaTa--N-tlaKiA--~Gi----aDnllt~-~-~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~ 160 (212)
...+ ..+|+++++|-.- | -+.+.| .|+ +|++-.+ . +=+.-.+.++.|+.+.+. .+|...+.|+.
T Consensus 64 ~~dl-~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G---~sP~la~~lr~ 138 (205)
T TIGR01470 64 ADIL-EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGG---AAPVLARLLRE 138 (205)
T ss_pred HHHh-CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCC---CCcHHHHHHHH
Confidence 1123 4688888887553 2 244443 343 5655332 1 111113557888887665 67877777663
No 49
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=44.27 E-value=30 Score=33.10 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=44.7
Q ss_pred cHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE---eCCCCcccccCCCCCCCCCChHHHHHHHHHh
Q 028187 123 NLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL---IPPVSKRLACGDYGNGAMAEPSLIYSTVRLF 199 (212)
Q Consensus 123 nllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~v---v~P~~g~la~g~~g~g~~~~~~~i~~~v~~~ 199 (212)
|++|....|.-++.|+++.|.---.--.--.+.+++|+-.+-.++. +.|++.. -.|...||+|+..+.++
T Consensus 97 NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRY-------fDRItRPEQl~sal~rA 169 (617)
T COG3962 97 NMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRY-------FDRITRPEQLMSALPRA 169 (617)
T ss_pred HHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHH-------hhhcCCHHHHHHHHHHH
Confidence 5666655666678999999983222112224556666654433333 2366553 36888999999988766
Q ss_pred hc
Q 028187 200 AE 201 (212)
Q Consensus 200 ~~ 201 (212)
++
T Consensus 170 ~~ 171 (617)
T COG3962 170 MR 171 (617)
T ss_pred HH
Confidence 53
No 50
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=43.83 E-value=2.4e+02 Score=25.38 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=31.0
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeC
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIP 170 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~ 170 (212)
++...+|++|.-| .|+ ++.+|+-.++|+|+...... .-..|...+.+.|+-++.
T Consensus 269 ~~~~~aDl~I~k~----------gg~------tl~EA~a~G~PvI~~~~~pg------qe~~N~~~~~~~G~g~~~ 322 (391)
T PRK13608 269 EWMASSQLMITKP----------GGI------TISEGLARCIPMIFLNPAPG------QELENALYFEEKGFGKIA 322 (391)
T ss_pred HHHHhhhEEEeCC----------chH------HHHHHHHhCCCEEECCCCCC------cchhHHHHHHhCCcEEEe
Confidence 3446799998522 122 24456557999999732111 123566677777766553
No 51
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=43.43 E-value=40 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=27.5
Q ss_pred CeEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEeccc
Q 028187 23 PRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 23 ~kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~s 58 (212)
+||++...|..+... +.++++.|++ |++|.++..+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 478887776666665 6689999986 99999987655
No 52
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=43.34 E-value=33 Score=31.06 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=23.7
Q ss_pred EEEeeChhHHHHHHHHHHHhh-cCCeEEEEeccc
Q 028187 26 LLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKS 58 (212)
Q Consensus 26 lv~vTGs~~a~~~~~li~~L~-~g~~V~vvlT~s 58 (212)
.++|||+.+-+ +..+++.|. +||.|+-.+-+.
T Consensus 8 ~VcVTGAsGfI-gswivk~LL~rGY~V~gtVR~~ 40 (327)
T KOG1502|consen 8 KVCVTGASGFI-GSWIVKLLLSRGYTVRGTVRDP 40 (327)
T ss_pred EEEEeCCchHH-HHHHHHHHHhCCCEEEEEEcCc
Confidence 57899985544 667888875 599999888443
No 53
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.89 E-value=60 Score=23.64 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=22.6
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEecc
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAM 144 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pam 144 (212)
.+|+++++|-...-..++.. .+-..++|+...+.+
T Consensus 50 ~~Dvill~pqi~~~~~~i~~-----------~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 50 DADVVLLAPQVAYMLPDLKK-----------ETDKKGIPVEVINGA 84 (95)
T ss_pred CCCEEEECchHHHHHHHHHH-----------HhhhcCCCEEEeChh
Confidence 47999999987776655431 111246788887653
No 54
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=42.87 E-value=46 Score=28.01 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=31.5
Q ss_pred hhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEeccc
Q 028187 14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKS 58 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~s 58 (212)
|+..-.+.+|+++|.-.|+.+.-|+-.+++ .|.+|+|+.-+.
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~---~ga~v~Vvs~~~ 45 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLK---AGADVTVVSPEF 45 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHh---cCCEEEEEcCCc
Confidence 455567888999999999988888554433 389999987665
No 55
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.77 E-value=34 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.4
Q ss_pred HHHHHHHhhc-CCeEEEEecccHHHHhc
Q 028187 38 FGNLCHCFSE-WAEVRAVATKSSLHFID 64 (212)
Q Consensus 38 ~~~li~~L~~-g~~V~vvlT~sA~~~i~ 64 (212)
++.+...|++ |++|.|--|++|.+++.
T Consensus 16 alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 16 ALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 5667888986 99999999999998875
No 56
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=42.27 E-value=43 Score=26.33 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.2
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc----CCeEEEEecc
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATK 57 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~----g~~V~vvlT~ 57 (212)
||+|++||+....-+..++..+.+ +.+|.++.-+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 689999999999888777777643 4577665433
No 57
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=42.20 E-value=1.7e+02 Score=25.91 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=17.9
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCe
Q 028187 19 GLRKPRILLAASGSVAAIKFGNLCHCFSE-WAE 50 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~ 50 (212)
+.+.+-+++|+||+.+..- ++.|.+ +.+
T Consensus 6 ~~~~~~~v~~~~~~~g~~~----l~~l~~~g~~ 34 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFH----TEQMLAYGTN 34 (291)
T ss_pred cCCCeEEEeCCCchHHHHH----HHHHHHCCCC
Confidence 3344568999999987753 444443 555
No 58
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=41.69 E-value=26 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=21.6
Q ss_pred EEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028187 25 ILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 56 (212)
Q Consensus 25 ilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT 56 (212)
.++|.||||+.. ++++++...+.++|..+.-
T Consensus 2 ~ILGsTGSIG~q-tLdVi~~~~d~f~v~~Lsa 32 (129)
T PF02670_consen 2 AILGSTGSIGTQ-TLDVIRKHPDKFEVVALSA 32 (129)
T ss_dssp EEESTTSHHHHH-HHHHHHHCTTTEEEEEEEE
T ss_pred EEEcCCcHHHHH-HHHHHHhCCCceEEEEEEc
Confidence 467889998765 6788888765556655443
No 59
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.44 E-value=1.3e+02 Score=21.66 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=23.9
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEec
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 143 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pa 143 (212)
.+|+++++|-.+.-..++.. .+...++|+.+.|.
T Consensus 46 ~~Diil~~Pqv~~~~~~i~~-----------~~~~~~~pv~~I~~ 79 (96)
T cd05564 46 DADVVLLGPQVRYMLDEVKK-----------KAAEYGIPVAVIDM 79 (96)
T ss_pred CCCEEEEChhHHHHHHHHHH-----------HhccCCCcEEEcCh
Confidence 47999999998877766532 11235788888875
No 60
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=40.80 E-value=57 Score=24.54 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=25.6
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEE
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vv 54 (212)
-+|||+++-||-.+.++.+....|. . +.+++++
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll 37 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLI 37 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEE
Confidence 4689999999999988887776665 3 6666654
No 61
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=40.79 E-value=1.4e+02 Score=26.91 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=37.3
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHC
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL 164 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~ 164 (212)
..|.+|+||-|+.|.|-++.|++- .....+||=+|.--. ..-.++++-+|...
T Consensus 180 ~fD~vVva~gs~gT~AGl~~g~~~---------~~~~~~ViG~~v~~~----~~~~~~qv~~L~~~ 232 (323)
T COG2515 180 KFDSVVVAPGSGGTHAGLLVGLAQ---------LGPDVEVIGIDVSAD----PEKLKEQVLNLAQA 232 (323)
T ss_pred CCCEEEEeCCCcchHHHHHHHhhh---------ccCCCceEEEeecCC----HHHHHHHHHHHHHH
Confidence 589999999999999999999872 224677887776322 22344566666443
No 62
>PRK10116 universal stress protein UspC; Provisional
Probab=39.37 E-value=54 Score=24.47 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=25.8
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc--CCeEEEE
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~--g~~V~vv 54 (212)
-+||++++.+|....++.+....|.+ +.+++++
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLI 37 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 46999999999998888887777753 6677665
No 63
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.36 E-value=2.5e+02 Score=26.81 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=57.7
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCccccccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 100 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~a 100 (212)
+.+++++-.|..+-. +.+.|++ |++|.++=.+ -.+.-.-. +.+.+++.++.. ++ +-..+..+ +.+
T Consensus 417 ~~hiiI~G~G~~G~~----la~~L~~~g~~vvvId~d-~~~~~~~~--~~g~~~i~GD~~-----~~-~~L~~a~i-~~a 482 (558)
T PRK10669 417 CNHALLVGYGRVGSL----LGEKLLAAGIPLVVIETS-RTRVDELR--ERGIRAVLGNAA-----NE-EIMQLAHL-DCA 482 (558)
T ss_pred CCCEEEECCChHHHH----HHHHHHHCCCCEEEEECC-HHHHHHHH--HCCCeEEEcCCC-----CH-HHHHhcCc-ccc
Confidence 457777777776653 6778875 8888655443 33321111 123444433210 00 00112233 368
Q ss_pred cEEEEc-cCCHHHHHHHHccccCcH-HHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCE-EeCCC
Q 028187 101 DIMVIA-PLSANTLGKIAGGLCDNL-LTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGIS-LIPPV 172 (212)
Q Consensus 101 D~~vVa-PaTaNtlaKiA~GiaDnl-lt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~-vv~P~ 172 (212)
|.++++ +-. .+|. +...++......++ ++-. +++ +|.+.|++.|+. ++.|.
T Consensus 483 ~~viv~~~~~-----------~~~~~iv~~~~~~~~~~~i-iar~------~~~---~~~~~l~~~Gad~vv~p~ 536 (558)
T PRK10669 483 RWLLLTIPNG-----------YEAGEIVASAREKRPDIEI-IARA------HYD---DEVAYITERGANQVVMGE 536 (558)
T ss_pred CEEEEEcCCh-----------HHHHHHHHHHHHHCCCCeE-EEEE------CCH---HHHHHHHHcCCCEEEChH
Confidence 888776 221 1121 22223443233444 4433 455 888899988876 55554
No 64
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=39.06 E-value=61 Score=27.72 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhc----CCeEEEEe
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSE----WAEVRAVA 55 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~----g~~V~vvl 55 (212)
.+.+|+|++|||....-...++..+++ +.+|.++-
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~ 66 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVN 66 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 456899999999999888888877753 24666554
No 65
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=38.89 E-value=67 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh-cC---CeEEEEecccHHHHhc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS-EW---AEVRAVATKSSLHFID 64 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~-~g---~~V~vvlT~sA~~~i~ 64 (212)
.|+|||+++|.....- .+-+-.|. +| -||+|+-|+++..-..
T Consensus 1 mk~iLlatlG~sPqVV-TETL~aL~~~g~~p~EV~vitT~~~~~~~~ 46 (224)
T PF09623_consen 1 MKNILLATLGTSPQVV-TETLYALAQQGEIPDEVHVITTRDGAVRAA 46 (224)
T ss_pred CceEEEEecCCCchHH-HHHHHHHHcCCCCCCEEEEEECCChHHHHH
Confidence 3699999999987763 33444554 33 4999999998765443
No 66
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.49 E-value=1.3e+02 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=23.4
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc---CCeEEEEecccH
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKSS 59 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~---g~~V~vvlT~sA 59 (212)
++|++...|+-..-....+++.|.+ ++++.+++.++.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~ 210 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSN 210 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCC
Confidence 5677776666543335566666653 578888887643
No 67
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=37.46 E-value=46 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 56 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT 56 (212)
++-+++|.||||+.. ++++++...+.++|..+.-
T Consensus 2 k~i~IlGsTGSIG~q-tL~Vi~~~~~~f~v~~Laa 35 (389)
T TIGR00243 2 KQIVILGSTGSIGKS-TLDVVRHNPDHFQVVALSA 35 (389)
T ss_pred ceEEEEecChHHHHH-HHHHHHhCccccEEEEEEc
Confidence 345788999999876 6778877665567776654
No 68
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=36.93 E-value=1.1e+02 Score=27.26 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=33.4
Q ss_pred HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028187 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES 202 (212)
Q Consensus 130 ~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~ 202 (212)
.++..++|+|++|... +.+ .|.+.+.+.|+-+.-+ ..-.+.+++.+.++..+++
T Consensus 306 Eal~~G~P~v~~p~~~----dq~---~~a~~l~~~g~g~~l~------------~~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 306 EALFNGVPMVAVPQGA----DQP---MTARRIAELGLGRHLP------------PEEVTAEKLREAVLAVLSD 359 (392)
T ss_pred HHHHhCCCEEecCCcc----cHH---HHHHHHHHCCCEEEec------------cccCCHHHHHHHHHHHhcC
Confidence 4444699999999742 222 4666777777554311 1123567788888777654
No 69
>PRK07667 uridine kinase; Provisional
Probab=36.76 E-value=45 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCCCCeEEEEeeChhHHHHH---HHHHHHhhc-CCeEEEEeccc
Q 028187 19 GLRKPRILLAASGSVAAIKF---GNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~---~~li~~L~~-g~~V~vvlT~s 58 (212)
+.+..+++||++|..++=|. -.+.+.|.+ |..+.++-.+.
T Consensus 12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 33455699999999988873 234455554 67777765554
No 70
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.50 E-value=60 Score=26.53 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=51.3
Q ss_pred ccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc
Q 028187 96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR 175 (212)
Q Consensus 96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~ 175 (212)
+.+.+|++|+.|--..|+.-+..-++-.- .. ..+||++++ .....|. | ..+-++.+.+.|+ +++..-.
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~~~q-----lg-~~~kPiil~--n~~g~~~-~-l~~~l~~~~~~gf--i~~~~~~ 160 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLTWAQ-----LG-IHQKPIILF--NVNGHFD-G-LVEWLKYSIQEGF--ISESHLK 160 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHHHHH-----cC-CCCCCEEEE--CCcchHH-H-HHHHHHHHHHCCC--CCHHHcC
Confidence 34569999999999999977653322100 11 247899887 2245664 2 3344556666774 5554432
Q ss_pred cccCCCCCCCCCChHHHHHHHHH
Q 028187 176 LACGDYGNGAMAEPSLIYSTVRL 198 (212)
Q Consensus 176 la~g~~g~g~~~~~~~i~~~v~~ 198 (212)
+ ..-..++++++++++.
T Consensus 161 ~------~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 161 L------IHVVSRPDELIEQVQN 177 (178)
T ss_pred c------EEEcCCHHHHHHHHHh
Confidence 1 1234688888888754
No 71
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=35.87 E-value=67 Score=27.37 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=43.6
Q ss_pred cccccEEEEccCCHHHHHHHHccccCcHHHHHHH-hhcCCCcEEEEeccChhhhhChHHHHHHH-HHHHCCCEEeCCCCc
Q 028187 97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVR-AWDYNKPLFVAPAMNTFMWNNPFTERHLM-SIDELGISLIPPVSK 174 (212)
Q Consensus 97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~-a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~-~L~~~G~~vv~P~~g 174 (212)
...+|++|.. ++--+++..+++ +...+.+-||+|+-.+. |..++.++ +|.++|+.+.-|.+-
T Consensus 49 i~~~Dl~I~y------------~lHPDl~~~l~~~~~e~g~kavIvp~~~~~----~g~~~~lk~~~e~~gi~~~~P~~~ 112 (217)
T PF02593_consen 49 IPEADLLIAY------------GLHPDLTYELPEIAKEAGVKAVIVPSESPK----PGLRRQLKKQLEEFGIEVEFPKPF 112 (217)
T ss_pred CCCCCEEEEe------------ccCchhHHHHHHHHHHcCCCEEEEecCCCc----cchHHHHHHHHHhcCceeecCccc
Confidence 3568998865 444455554443 33468899999996665 67778887 578899999888753
No 72
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=35.56 E-value=64 Score=25.48 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.4
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccH
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSS 59 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA 59 (212)
||++++|||....-+..++..+.. +.+|.++.-+.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 689999999999988888877643 467877765444
No 73
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=35.48 E-value=55 Score=27.92 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=29.9
Q ss_pred hhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEeccc
Q 028187 14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKS 58 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~s 58 (212)
|+.-.+.+++++||.-.|.++.-|+..|++ .|++|+||.-+-
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i 58 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKF 58 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCC
Confidence 344446678899998888888877554433 389999997553
No 74
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.51 E-value=2.5e+02 Score=29.30 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCeEEEEeeChhHHH-------HHHHHHHHhhc-CCeEEEEec
Q 028187 22 KPRILLAASGSVAAI-------KFGNLCHCFSE-WAEVRAVAT 56 (212)
Q Consensus 22 ~~kilv~vTGs~~a~-------~~~~li~~L~~-g~~V~vvlT 56 (212)
.+||||.-+|++..- ....+++.|++ |++|.++=+
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~ 49 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNS 49 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcC
Confidence 357888878875432 23457888876 887766643
No 75
>COG4425 Predicted membrane protein [Function unknown]
Probab=34.16 E-value=37 Score=32.40 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHH-HHHHhhc-C---CeEEEEecccHHHHhccccCC
Q 028187 4 SEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGN-LCHCFSE-W---AEVRAVATKSSLHFIDRAALP 69 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~-li~~L~~-g---~~V~vvlT~sA~~~i~~~~l~ 69 (212)
+.|+-+|-.+|--......-|+++|.-.+-+...-.+ .+++|++ | -+|-+|.++.+.-||+++.+.
T Consensus 270 ~GPtg~dI~aft~t~a~ePiRvy~Glnsa~s~~~ra~Lal~El~RtGg~rR~vlvVv~~TGTGWIdp~a~~ 340 (588)
T COG4425 270 SGPTGADITAFTGTPAVEPIRVYAGLNSADSPEERAELALRELKRTGGLRRKVLVVVTSTGTGWIDPAAAD 340 (588)
T ss_pred cCCCccceeeecCCCCCCceeEEecccccCCHHHHHHHHHHHHHHhcCcceeEEEEEcCCCCCCCCHHHHh
Confidence 4577777777776666667799999877766666444 4788986 4 478889999999999988753
No 76
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=34.12 E-value=81 Score=22.17 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=24.5
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEe
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 55 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvl 55 (212)
+|++++.++.....+.++...+.+ +.+++++.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 589999999888888887777653 66777554
No 77
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=33.95 E-value=73 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.8
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEe
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 55 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvl 55 (212)
||++++.|+-.+..+.++...|.+ +.++.++-
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~ 34 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLN 34 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 689999999998888888888763 55665443
No 78
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=33.69 E-value=94 Score=29.56 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=23.5
Q ss_pred HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe
Q 028187 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 169 (212)
Q Consensus 130 ~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv 169 (212)
+|+..++|+|++|-.. +.+ .|.+++.+.|+-+.
T Consensus 379 Eal~~GvP~v~iP~~~----DQ~---~Na~rv~~~G~G~~ 411 (507)
T PHA03392 379 EAIDALVPMVGLPMMG----DQF---YNTNKYVELGIGRA 411 (507)
T ss_pred HHHHcCCCEEECCCCc----cHH---HHHHHHHHcCcEEE
Confidence 3555699999999753 344 67888888876644
No 79
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.68 E-value=3.2e+02 Score=23.78 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=24.8
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEeccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKS 58 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~s 58 (212)
.||+|.-+|+++.+.+..|.+ .|++|.++.-..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCC
Confidence 589999999999987654333 389999886543
No 80
>PLN02477 glutamate dehydrogenase
Probab=33.34 E-value=4e+02 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.8
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 028187 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 171 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P 171 (212)
+.++|+=.+ ++|.+.+.-+.|++.|+.++|-
T Consensus 303 ~ak~I~egA------N~p~t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 303 KAKFIVEAA------NHPTDPEADEILRKKGVVVLPD 333 (410)
T ss_pred CCcEEEeCC------CCCCCHHHHHHHHHCCcEEECh
Confidence 678888888 8888889999999999999974
No 81
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.47 E-value=2.4e+02 Score=22.03 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=58.3
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhh-cCCeEEEEe-ccc-HHHHhccccCCCCCeeEeccccccccccCCCcccccccccc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVA-TKS-SLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRW 99 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~-~g~~V~vvl-T~s-A~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~ 99 (212)
++|.|.-.|..+.-- .+.|. +|++|.+.= +++ +.+|... +.... +. + -++.+.
T Consensus 2 ~~Ig~IGlG~mG~~~----a~~L~~~g~~v~~~d~~~~~~~~~~~~-----g~~~~-~s-----------~---~e~~~~ 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAM----ARNLAKAGYEVTVYDRSPEKAEALAEA-----GAEVA-DS-----------P---AEAAEQ 57 (163)
T ss_dssp BEEEEE--SHHHHHH----HHHHHHTTTEEEEEESSHHHHHHHHHT-----TEEEE-SS-----------H---HHHHHH
T ss_pred CEEEEEchHHHHHHH----HHHHHhcCCeEEeeccchhhhhhhHHh-----hhhhh-hh-----------h---hhHhhc
Confidence 477777788877764 44444 489998763 322 2344321 11111 11 1 134556
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHH-HHHHCCCEEeC-CCCc
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLM-SIDELGISLIP-PVSK 174 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~-~L~~~G~~vv~-P~~g 174 (212)
+|+++++=....-+-.+..|- +++ ..+. ...+++- +++ .+|...+.+. .+++.|+.+++ |+.|
T Consensus 58 ~dvvi~~v~~~~~v~~v~~~~--~i~----~~l~-~g~iiid--~sT---~~p~~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 58 ADVVILCVPDDDAVEAVLFGE--NIL----AGLR-PGKIIID--MST---ISPETSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp BSEEEE-SSSHHHHHHHHHCT--THG----GGS--TTEEEEE---SS-----HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred ccceEeecccchhhhhhhhhh--HHh----hccc-cceEEEe--cCC---cchhhhhhhhhhhhhccceeeeeeeec
Confidence 898888755555555555551 122 1221 2233332 223 4666556555 56889999987 5554
No 82
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=32.32 E-value=89 Score=28.60 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecc
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 57 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~ 57 (212)
+++||+|++||++...-+..+++. .|++|..+.-+
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~G~eV~av~~~ 38 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMR 38 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--cCCcEEEEEec
Confidence 346999999999888776655543 37777755433
No 83
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=31.66 E-value=1.4e+02 Score=25.50 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc--cccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 134 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR--LACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 134 ~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~--la~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
...|++. -|.........+.+|++.|.+.|+.-+-.+-+. --||..|-...-+.|+.++.++.+.+
T Consensus 68 ~~~Pv~~--D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~ 135 (243)
T cd00377 68 VDLPVIA--DADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARD 135 (243)
T ss_pred ccCCEEE--EcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHH
Confidence 3667433 233332233467889999988988755544332 23777776677899999998876654
No 84
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=31.40 E-value=29 Score=30.23 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.6
Q ss_pred cchhhhhhccCCCC-CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhc
Q 028187 9 TDREAMQVNTGLRK-PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFID 64 (212)
Q Consensus 9 ~~~~~~~~~~~~~~-~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~ 64 (212)
+|.+++.....+.. ..|+++-+++.+..-+.++.+.+.++..|-+++|+++.+..+
T Consensus 238 ~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~ 294 (298)
T TIGR01139 238 SDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLS 294 (298)
T ss_pred CHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccC
Confidence 34455555444443 468888876655444556666554566888999999887654
No 85
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=31.11 E-value=42 Score=27.70 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhh
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFS 46 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~ 46 (212)
.+.++++|+||++++=|.- +.+.|.
T Consensus 2 ~~~~~~igitG~igsGKSt-~~~~l~ 26 (208)
T PRK14731 2 RSLPFLVGVTGGIGSGKST-VCRFLA 26 (208)
T ss_pred CCCCEEEEEECCCCCCHHH-HHHHHH
Confidence 3456889999999998832 344444
No 86
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=30.90 E-value=3.1e+02 Score=22.80 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=35.6
Q ss_pred ccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHH-HHHCCCEEeC
Q 028187 94 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMS-IDELGISLIP 170 (212)
Q Consensus 94 ~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~-L~~~G~~vv~ 170 (212)
+...+..|.++||=.=.+||++|.....+.+- ....+|+-|. .+. ..|++ |.+.|+.++.
T Consensus 61 l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~--------~~~~lILqP~------~~~---~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 61 LKPGEDVDTIVIAGMGGELIIEILEAGPEKLS--------SAKRLILQPN------THA---YELRRWLYENGFEIID 121 (205)
T ss_dssp --GGG---EEEEEEE-HHHHHHHHHHTGGGGT--------T--EEEEEES------S-H---HHHHHHHHHTTEEEEE
T ss_pred cCCCCCCCEEEEecCCHHHHHHHHHhhHHHhc--------cCCeEEEeCC------CCh---HHHHHHHHHCCCEEEE
Confidence 33333479999999999999998776654221 2346899997 444 34443 6777888775
No 87
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=30.62 E-value=95 Score=28.33 Aligned_cols=31 Identities=29% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEE
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vv 54 (212)
++|+++++||++...-+..+++.. |++|..+
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~--G~~V~~v 35 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA--GYEVTGV 35 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc--CCeEEEE
Confidence 468999999999888776666543 7777654
No 88
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=30.37 E-value=58 Score=25.33 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=27.2
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 169 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv 169 (212)
++.+++|++|-- +=++|+. .++..++|.|++|.-...- .--..|-..+.+.|.-+.
T Consensus 68 ~~m~~aDlvIs~-aG~~Ti~---------------E~l~~g~P~I~ip~~~~~~---~~q~~na~~~~~~g~~~~ 123 (167)
T PF04101_consen 68 ELMAAADLVISH-AGAGTIA---------------EALALGKPAIVIPLPGAAD---NHQEENAKELAKKGAAIM 123 (167)
T ss_dssp HHHHHHSEEEEC-S-CHHHH---------------HHHHCT--EEEE--TTT-T----CHHHHHHHHHHCCCCCC
T ss_pred HHHHHcCEEEeC-CCccHHH---------------HHHHcCCCeeccCCCCcch---HHHHHHHHHHHHcCCccc
Confidence 455678855543 3334443 2333689999999732100 122346677888876443
No 89
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=30.20 E-value=1e+02 Score=28.81 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhh--c-CCeEEEEecc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFS--E-WAEVRAVATK 57 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~--~-g~~V~vvlT~ 57 (212)
..+|+|++|||....-...++..++ . ++++.++.=+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvn 53 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVH 53 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 4689999999999988888877764 2 5777766544
No 90
>PLN02572 UDP-sulfoquinovose synthase
Probab=30.04 E-value=72 Score=29.59 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=19.7
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHHHHhh-cCCeEEEE
Q 028187 19 GLRKPRILLAASGSVAAIKFGNLCHCFS-EWAEVRAV 54 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~~~li~~L~-~g~~V~vv 54 (212)
+.++++| .|||+.+-. .-.+++.|. +|++|.++
T Consensus 44 ~~~~k~V--LVTGatGfI-Gs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 44 SSKKKKV--MVIGGDGYC-GWATALHLSKRGYEVAIV 77 (442)
T ss_pred cccCCEE--EEECCCcHH-HHHHHHHHHHCCCeEEEE
Confidence 4555664 345553333 335777776 48998876
No 91
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=29.69 E-value=79 Score=28.89 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=18.3
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEE
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAV 54 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~g~~V~vv 54 (212)
+||++++||++...-+..++++ +|++|.-+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~--~G~~V~Gv 30 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE--QGYDVIGV 30 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH--CT-EEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHh--hcccceEE
Confidence 5899999999887765555442 48887633
No 92
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=29.61 E-value=80 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred eEEEEeeC---hhHHHHHHHHHHHhhc-CCeEEEEecc
Q 028187 24 RILLAASG---SVAAIKFGNLCHCFSE-WAEVRAVATK 57 (212)
Q Consensus 24 kilv~vTG---s~~a~~~~~li~~L~~-g~~V~vvlT~ 57 (212)
||++.++| |.+...+..+++.|.+ |++|.++...
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 36666664 2233347788999975 9999988643
No 93
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=29.58 E-value=1.3e+02 Score=26.43 Aligned_cols=88 Identities=14% Similarity=0.000 Sum_probs=0.0
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 174 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g 174 (212)
++...+|+++..- -+.+++++..++|+|+.|. -+|.....-+.+...++..++=...
T Consensus 257 ~~~~~aDl~v~~s-----------------G~~~lEa~a~G~PvI~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (380)
T PRK00025 257 EAMAAADAALAAS-----------------GTVTLELALLKVPMVVGYK------VSPLTFWIAKRLVKVPYVSLPNLLA 313 (380)
T ss_pred HHHHhCCEEEECc-----------------cHHHHHHHHhCCCEEEEEc------cCHHHHHHHHHHHcCCeeehHHHhc
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhhcCCCC
Q 028187 175 RLACGDYGNGAMAEPSLIYSTVRLFAESRNQ 205 (212)
Q Consensus 175 ~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l 205 (212)
.-..+.+=.-...+++++.+.+..+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 344 (380)
T PRK00025 314 GRELVPELLQEEATPEKLARALLPLLADGAR 344 (380)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHhcCHHH
No 94
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=29.44 E-value=92 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=23.7
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecc
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 57 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~ 57 (212)
++++++|||.....+..++.+. |++|..+.-+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~--g~~v~av~~d 32 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR--GIEVDALHFN 32 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc--CCeEEEEEEe
Confidence 5899999999888766666543 7888766543
No 95
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.30 E-value=89 Score=28.99 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=31.5
Q ss_pred cCcHHH-HHHHhhc---CCCcEEEEeccChhhhhChHHHHHHHHHHHC--CCEEeCCCC
Q 028187 121 CDNLLT-CIVRAWD---YNKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVS 173 (212)
Q Consensus 121 aDnllt-~~~~a~~---~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~--G~~vv~P~~ 173 (212)
+||++. .++.+.. .++-+|.-+- |||.+.+-++.|.+. .++.++|..
T Consensus 73 snNlaI~g~~~a~~~~~~~~HIIts~i------EH~aVl~~~~~Le~~g~~Vtyl~V~~ 125 (386)
T COG1104 73 SNNLAIKGAALAYRNAQKGKHIITSAI------EHPAVLNTCRYLERQGFEVTYLPVDS 125 (386)
T ss_pred HHHHHHHhhHHhhhcccCCCeEEEccc------ccHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 467643 3444442 2556766666 999999999999554 566788764
No 96
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.10 E-value=71 Score=28.61 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=23.3
Q ss_pred CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHh
Q 028187 20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFI 63 (212)
Q Consensus 20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i 63 (212)
.+.||+-+.+|-|..........+.|++ |.++.+|+.-++..|+
T Consensus 141 ~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~ 185 (301)
T COG1184 141 DRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFM 185 (301)
T ss_pred hcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHH
Confidence 3344455555666555555555555554 5555555544444444
No 97
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=29.05 E-value=47 Score=24.90 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=34.8
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 64 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~ 64 (212)
..+++.-||.-..+.-+++.+.|++ |..|.+.=|.+|.+-.+
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~AcrTyN 95 (109)
T cd05560 53 PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQAACRTYN 95 (109)
T ss_pred CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 4688888999888877788888875 99999999999987544
No 98
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=28.91 E-value=3.7e+02 Score=23.02 Aligned_cols=111 Identities=15% Similarity=0.053 Sum_probs=55.2
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecc--cHHHHhccccCCCCCeeEeccccccccccCCCcccccccccc
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATK--SSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRW 99 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~--sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~ 99 (212)
||.+.-+|.++... ++.+.+ +.++..+... +..+.. ..+..+..++++. ... ...
T Consensus 3 rVgIiG~G~iG~~~----~~~l~~~~~~~l~~v~~~~~~~~~~~--~~~~~~~~~~~d~-------------~~l--~~~ 61 (265)
T PRK13303 3 KVAMIGFGAIGAAV----LELLEHDPDLRVDWVIVPEHSIDAVR--RALGEAVRVVSSV-------------DAL--PQR 61 (265)
T ss_pred EEEEECCCHHHHHH----HHHHhhCCCceEEEEEEcCCCHHHHh--hhhccCCeeeCCH-------------HHh--ccC
Confidence 67777778888764 344442 4666666532 222211 1111123333331 111 235
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHH-HHCCCEEeC
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI-DELGISLIP 170 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L-~~~G~~vv~ 170 (212)
.|+++++--+. .. ...+..++..++++++ +++..+..+...+.|.++ ++.|..+.-
T Consensus 62 ~DvVve~t~~~-~~-----------~e~~~~aL~aGk~Vvi---~s~~Al~d~~~~~~L~~~A~~~g~~l~v 118 (265)
T PRK13303 62 PDLVVECAGHA-AL-----------KEHVVPILKAGIDCAV---ISVGALADEALRERLEQAAEAGGARLHL 118 (265)
T ss_pred CCEEEECCCHH-HH-----------HHHHHHHHHcCCCEEE---eChHHhcCHHHHHHHHHHHHHCCCEEEE
Confidence 89999884221 11 1222244446889886 344433445555666665 445776554
No 99
>PRK10537 voltage-gated potassium channel; Provisional
Probab=28.78 E-value=4.7e+02 Score=24.12 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCccccccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 100 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~a 100 (212)
+.++++|-.|..+. .+++.|++ |.++.++-.+..+ +..+.+..++.++.. +. +......+ +.|
T Consensus 240 k~HvII~G~g~lg~----~v~~~L~~~g~~vvVId~d~~~-----~~~~~g~~vI~GD~t-----d~-e~L~~AgI-~~A 303 (393)
T PRK10537 240 KDHFIICGHSPLAI----NTYLGLRQRGQAVTVIVPLGLE-----HRLPDDADLIPGDSS-----DS-AVLKKAGA-ARA 303 (393)
T ss_pred CCeEEEECCChHHH----HHHHHHHHCCCCEEEEECchhh-----hhccCCCcEEEeCCC-----CH-HHHHhcCc-ccC
Confidence 44676666665443 36677764 7888777654211 122233344433210 00 01111222 358
Q ss_pred cEEEEccCCHHHHHHHHccccCcHHHH-HHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCE-EeCCC
Q 028187 101 DIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGIS-LIPPV 172 (212)
Q Consensus 101 D~~vVaPaTaNtlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~-vv~P~ 172 (212)
+.++++.-. -++|+... .++....+.+++..- +++ +|.++|++.|+. ++.|.
T Consensus 304 ~aVI~~t~d----------D~~Nl~ivL~ar~l~p~~kIIa~v-------~~~---~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 304 RAILALRDN----------DADNAFVVLAAKEMSSDVKTVAAV-------NDS---KNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred CEEEEcCCC----------hHHHHHHHHHHHHhCCCCcEEEEE-------CCH---HHHHHHHhcCCCEEECHH
Confidence 888876432 12233222 234443344554433 355 889999999885 56664
No 100
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=28.54 E-value=1.9e+02 Score=25.81 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=44.3
Q ss_pred ccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHH-HHHHHHHHCCCEEeCCCCc
Q 028187 96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTE-RHLMSIDELGISLIPPVSK 174 (212)
Q Consensus 96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~-~nl~~L~~~G~~vv~P~~g 174 (212)
+..++|++|-- +.++|++- ++-.++|.|++|-.... .+--| .|.+.|.+.|+-..-...
T Consensus 249 ~~~~adlvIsr-~G~~t~~E---------------~~~~g~P~I~iP~~~~~---~~~~Q~~Na~~l~~~g~~~~l~~~- 308 (352)
T PRK12446 249 ILAITDFVISR-AGSNAIFE---------------FLTLQKPMLLIPLSKFA---SRGDQILNAESFERQGYASVLYEE- 308 (352)
T ss_pred HHHhCCEEEEC-CChhHHHH---------------HHHcCCCEEEEcCCCCC---CCchHHHHHHHHHHCCCEEEcchh-
Confidence 44578866655 55555543 22258999999863211 01112 577888888866443321
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028187 175 RLACGDYGNGAMAEPSLIYSTVRLFAES 202 (212)
Q Consensus 175 ~la~g~~g~g~~~~~~~i~~~v~~~~~~ 202 (212)
.+ +++.+.+.+..++++
T Consensus 309 ----------~~-~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 309 ----------DV-TVNSLIKHVEELSHN 325 (352)
T ss_pred ----------cC-CHHHHHHHHHHHHcC
Confidence 11 567777777776653
No 101
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.50 E-value=44 Score=25.00 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=34.2
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 64 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~ 64 (212)
+..+++.-||.-..+--+++.+.|++ |..|.+.=|++|.+-.+
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAcrTyN 95 (109)
T cd00248 52 RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAACRTYN 95 (109)
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 35688888999876657778888875 99999999999987543
No 102
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.30 E-value=2.4e+02 Score=24.25 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=45.1
Q ss_pred HHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC-cccccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 128 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS-KRLACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 128 ~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~-g~la~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
.+++++.++=.++.|- -.+..|+-.+-|...|+.|+.-.. |. .++...||. +|..++++.++.+.
T Consensus 112 aL~al~a~ri~vlTPY------~~evn~~e~ef~~~~Gfeiv~~~~Lgi--~dn~eigr~-~P~~~y~lAk~~~~ 177 (238)
T COG3473 112 ALNALGAQRISVLTPY------IDEVNQREIEFLEANGFEIVDFKGLGI--TDNLEIGRQ-EPWAVYRLAKEVFT 177 (238)
T ss_pred HHHhhCcceEEEeccc------hhhhhhHHHHHHHhCCeEEEEeeccCC--cccchhccc-ChHHHHHHHHHhcC
Confidence 4466677777888887 577899999999999999997322 21 223345676 45577777776653
No 103
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=28.28 E-value=84 Score=23.51 Aligned_cols=31 Identities=6% Similarity=-0.146 Sum_probs=24.0
Q ss_pred eEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEE
Q 028187 24 RILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 54 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vv 54 (212)
+||+++-||-.+.++.++...+. + +.++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll 33 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLV 33 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEE
Confidence 58999999999999888877664 3 6666554
No 104
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.04 E-value=1.3e+02 Score=22.47 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=19.4
Q ss_pred CeEEEEeeChhHHHHHHHHHHHh-hc-CCeEEEEecc
Q 028187 23 PRILLAASGSVAAIKFGNLCHCF-SE-WAEVRAVATK 57 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L-~~-g~~V~vvlT~ 57 (212)
+||+++..+|++.--+..-++.+ ++ |.++.+..+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 47777766666555444444444 33 6666655443
No 105
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.90 E-value=91 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccH
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSS 59 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA 59 (212)
.+.||.|.-+|-.+.. |-+.|.+ |++|.-+.+++.
T Consensus 9 ~~l~I~iIGaGrVG~~----La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTA----LARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ---EEEEECTSCCCCH----HHHHHHHTTSEEEEESSCHH
T ss_pred CccEEEEECCCHHHHH----HHHHHHHCCCeEEEEEeCCc
Confidence 4557777777766664 4455654 899999988764
No 106
>PRK10637 cysG siroheme synthase; Provisional
Probab=27.67 E-value=81 Score=29.50 Aligned_cols=39 Identities=28% Similarity=0.241 Sum_probs=29.8
Q ss_pred hhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEe
Q 028187 14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvl 55 (212)
++...++++++++|.-.|.++..|+..+++ .|++|+||.
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~vis 42 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLD---AGARLTVNA 42 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEc
Confidence 455667889999999899988888654443 388999984
No 107
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=27.66 E-value=41 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 64 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~ 64 (212)
+.-+++.-||....+--+++.+.|++ |..|.+.=|++|.+-.+
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~tyN 96 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRTYN 96 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHHHH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 44677777998844447788888875 99999999999987543
No 108
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=27.58 E-value=1.3e+02 Score=27.65 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=27.1
Q ss_pred CCCCeEEEEee-------ChhHHHHHHHHHHHhhc-CCeEEEEeccc
Q 028187 20 LRKPRILLAAS-------GSVAAIKFGNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 20 ~~~~kilv~vT-------Gs~~a~~~~~li~~L~~-g~~V~vvlT~s 58 (212)
.++.||++.+. ||.. ....++++.|.+ |++|.++.+..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~-~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYK-NRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHH-HHHHHHHHHHHHCCCeEEEEecCC
Confidence 45568887753 3433 456788999975 99999998754
No 109
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=27.12 E-value=2.5e+02 Score=25.88 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=48.8
Q ss_pred cccccccc-cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhc-CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE
Q 028187 91 VLHIELRR-WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD-YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL 168 (212)
Q Consensus 91 ~~h~~l~~-~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~-~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~v 168 (212)
+.|+...| -.-+-+|+|.-. +|.|.. .++ .++|+.++.-.|..---.+..++.+++|++.|+.+
T Consensus 187 IpHv~iiRi~TR~pvv~P~RI----------t~~L~~----~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l 252 (369)
T COG1509 187 IPHVKIIRIGTRLPVVLPQRI----------TDELCE----ILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPL 252 (369)
T ss_pred CCceeEEEeecccceechhhc----------cHHHHH----HHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCcee
Confidence 45665422 255778888643 244433 222 37999999999888778889999999999999999
Q ss_pred eCCC
Q 028187 169 IPPV 172 (212)
Q Consensus 169 v~P~ 172 (212)
..-.
T Consensus 253 ~NQs 256 (369)
T COG1509 253 LNQS 256 (369)
T ss_pred ecch
Confidence 8743
No 110
>PLN02735 carbamoyl-phosphate synthase
Probab=26.59 E-value=4.9e+02 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=23.7
Q ss_pred CeEEEEeeChhHH-------HHHHHHHHHhhc-CCeEEEEecc
Q 028187 23 PRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATK 57 (212)
Q Consensus 23 ~kilv~vTGs~~a-------~~~~~li~~L~~-g~~V~vvlT~ 57 (212)
|||||.-+|.+.. +....+++.|++ |++|-++=+.
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~n 66 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSN 66 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCC
Confidence 5888888887533 224457888886 8887766443
No 111
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=26.50 E-value=62 Score=29.92 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=30.0
Q ss_pred CCcEEEEeccChhhhhChHHHHHH------HHHHHCCCEEeCCCCcccccCCCCCCCCCC
Q 028187 135 NKPLFVAPAMNTFMWNNPFTERHL------MSIDELGISLIPPVSKRLACGDYGNGAMAE 188 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~~~nl------~~L~~~G~~vv~P~~g~la~g~~g~g~~~~ 188 (212)
+++++++|. +..+.+.+ +.|.+.|+.|.+|..+ .|-..+.+.+.+
T Consensus 299 ~v~~~v~P~-------S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~--~C~G~~~~~~~~ 349 (389)
T cd01351 299 GVRLIVTPG-------SRMVYATLSREGYYEILVDSGARILPPGCG--PCMGNGARLVAD 349 (389)
T ss_pred CceEEEECC-------CHHHHHHHHHcChHHHHHHCCCEEeCCCCc--ccCCCCCCcCCC
Confidence 468899998 33333333 3688999999998776 565555555544
No 112
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=26.40 E-value=4.6e+02 Score=23.28 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=40.0
Q ss_pred cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 028187 95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 174 (212)
Q Consensus 95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g 174 (212)
++...+|++|.-| | ..++++|+..++|+|+.+.... .-..|.+.+.+.|.-+..
T Consensus 278 ~l~~aaDv~V~~~-----------g-----~~ti~EAma~g~PvI~~~~~pg------qe~gn~~~i~~~g~g~~~---- 331 (382)
T PLN02605 278 EWMGACDCIITKA-----------G-----PGTIAEALIRGLPIILNGYIPG------QEEGNVPYVVDNGFGAFS---- 331 (382)
T ss_pred HHHHhCCEEEECC-----------C-----cchHHHHHHcCCCEEEecCCCc------cchhhHHHHHhCCceeec----
Confidence 4456799999632 2 1134567768999999864221 111356666665554432
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhhc
Q 028187 175 RLACGDYGNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 175 ~la~g~~g~g~~~~~~~i~~~v~~~~~ 201 (212)
.+++++.+.+.++++
T Consensus 332 ------------~~~~~la~~i~~ll~ 346 (382)
T PLN02605 332 ------------ESPKEIARIVAEWFG 346 (382)
T ss_pred ------------CCHHHHHHHHHHHHc
Confidence 256666666666654
No 113
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.10 E-value=1.2e+02 Score=26.40 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.5
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFID 64 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~ 64 (212)
||||.-+++++-.- +..+++.|++ +++|+++..+....++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 45 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE 45 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh
Confidence 58888899988776 6678899975 68999999988877765
No 114
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.05 E-value=1e+02 Score=22.35 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=23.2
Q ss_pred eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEE
Q 028187 24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAV 54 (212)
Q Consensus 24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vv 54 (212)
||++++.||-...++.++...+.+ +.+++++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll 33 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVV 33 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEE
Confidence 689999999888888887777753 5555544
No 115
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=26.01 E-value=1.2e+02 Score=25.12 Aligned_cols=37 Identities=19% Similarity=-0.024 Sum_probs=24.3
Q ss_pred eEEEEeeC-hhHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 028187 24 RILLAASG-SVAAIKFGNLCHCFSE-WAEVRAVATKSSL 60 (212)
Q Consensus 24 kilv~vTG-s~~a~~~~~li~~L~~-g~~V~vvlT~sA~ 60 (212)
||++..+. +........+++.|.+ |++|.++.+....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 34444443 3334447788999965 9999999877544
No 116
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=25.89 E-value=2.8e+02 Score=20.58 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHH-ccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028187 113 LGKIA-GGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 173 (212)
Q Consensus 113 laKiA-~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~ 173 (212)
.+++. .||.|+++..+-..+..+.-.+++-. ++....+=.+.|+++|-+++.-..
T Consensus 32 ~G~l~d~gI~d~~~~ev~~~L~~GssAl~~lv------~~~~~d~v~~~l~~~gg~v~~t~l 87 (102)
T PF06897_consen 32 AGALSDYGIDDEFIKEVGEALKPGSSALFLLV------DEATEDKVDAALRKFGGKVLRTSL 87 (102)
T ss_pred HhHHhhCCCCHHHHHHHHhhcCCCceEEEEEe------ccCCHHHHHHHHHhcCCEEEeccC
Confidence 44555 89999999888888877777777766 333333334468999988886543
No 117
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=25.66 E-value=1.6e+02 Score=28.02 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred ccEEEEccCCHHHHHHHHccccCcHHH--HHHHhhc--CCCcEEEEeccChhhhhChHHHHHHH------HHHHCCCEEe
Q 028187 100 ADIMVIAPLSANTLGKIAGGLCDNLLT--CIVRAWD--YNKPLFVAPAMNTFMWNNPFTERHLM------SIDELGISLI 169 (212)
Q Consensus 100 aD~~vVaPaTaNtlaKiA~GiaDnllt--~~~~a~~--~~~Pvvi~Pamn~~m~~~P~~~~nl~------~L~~~G~~vv 169 (212)
.|...|-=||-..+ .+|.. .+++... .+.+.+++|. +..+.+.++ .|.+.|+.+.
T Consensus 339 Id~~~IGSCTNgr~--------~dl~aaA~vlkG~kv~~~V~~~v~Pg-------S~~V~~~~~~~Gl~~~l~~aG~~i~ 403 (465)
T TIGR00170 339 VDKVFIGSCTNSRI--------EDLRAAAAVIKGRKVADNVKALVVPG-------SGLVKLQAEKEGLDKIFIEAGFEWR 403 (465)
T ss_pred EEEEEEecCCCCCH--------HHHHHHHHHhcCCCcCCCccEEEECC-------CHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 45555555554444 34432 2444432 3467999998 444555554 4788999999
Q ss_pred CCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCC
Q 028187 170 PPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGD 208 (212)
Q Consensus 170 ~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~ 208 (212)
+|..| .|-..+.+.+++.|-.+. -.+|++.|+
T Consensus 404 ~~gCg--~C~G~~~~~~~~ge~~is-----TsNRNF~GR 435 (465)
T TIGR00170 404 EPGCS--MCLGMNNDRLPEGERCAS-----TSNRNFEGR 435 (465)
T ss_pred CCccc--cccCcCCCCCCCCCEEEE-----ecCCCCCCC
Confidence 88655 465555566655543221 235666665
No 118
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=25.62 E-value=61 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHCCCEEeCCC
Q 028187 151 NPFTERHLMSIDELGISLIPPV 172 (212)
Q Consensus 151 ~P~~~~nl~~L~~~G~~vv~P~ 172 (212)
.-++-+|+++|++.|+.|..-.
T Consensus 33 RtaVwK~Iq~Lr~~G~~I~s~~ 54 (79)
T COG1654 33 RTAVWKHIQQLREEGVDIESVR 54 (79)
T ss_pred HHHHHHHHHHHHHhCCceEecC
Confidence 3467789999999999987643
No 119
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=25.61 E-value=85 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhc-CCeEEEEeccc
Q 028187 36 IKFGNLCHCFSE-WAEVRAVATKS 58 (212)
Q Consensus 36 ~~~~~li~~L~~-g~~V~vvlT~s 58 (212)
..+.++++.|.+ |++|+++....
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~ 28 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQP 28 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEEecCC
Confidence 346788999975 99999887543
No 120
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=25.32 E-value=3.4e+02 Score=24.72 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.6
Q ss_pred HhhcCCCcEEEEec
Q 028187 130 RAWDYNKPLFVAPA 143 (212)
Q Consensus 130 ~a~~~~~Pvvi~Pa 143 (212)
+++..++|.|++|.
T Consensus 310 E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 310 QAVGLGKPVIQLPG 323 (396)
T ss_pred HHHHhCCCEEEEeC
Confidence 34446899999995
No 121
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.24 E-value=1.2e+02 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=26.2
Q ss_pred CeEEEEeeChhHHHH--HHHHHHHhhc-CCeEEEEecccHH
Q 028187 23 PRILLAASGSVAAIK--FGNLCHCFSE-WAEVRAVATKSSL 60 (212)
Q Consensus 23 ~kilv~vTGs~~a~~--~~~li~~L~~-g~~V~vvlT~sA~ 60 (212)
|||+++ +|+.+.+- ++.+.++|++ |++|..+-|+.+.
T Consensus 2 ~~i~~~-~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~ 41 (352)
T PRK12446 2 KKIVFT-GGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI 41 (352)
T ss_pred CeEEEE-cCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence 355554 55555443 7778899985 9999999888764
No 122
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=25.10 E-value=1.4e+02 Score=23.85 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=26.3
Q ss_pred cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEec
Q 028187 97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 143 (212)
Q Consensus 97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pa 143 (212)
.+.+|++|+.|--..||--+.. ++..+||+++++.
T Consensus 89 ~~~sda~IvlpGG~GTL~E~~~------------a~~~~kpv~~l~~ 123 (159)
T TIGR00725 89 VRSADVVVSVGGGYGTAIEILG------------AYALGGPVVVLRG 123 (159)
T ss_pred HHHCCEEEEcCCchhHHHHHHH------------HHHcCCCEEEEEC
Confidence 4568999999988887765443 3446899999975
No 123
>PRK15005 universal stress protein F; Provisional
Probab=24.90 E-value=1.4e+02 Score=22.18 Aligned_cols=32 Identities=19% Similarity=-0.005 Sum_probs=21.5
Q ss_pred CCeEEEEeeChhH--HHHHHHHHHHhh-c-CCeEEE
Q 028187 22 KPRILLAASGSVA--AIKFGNLCHCFS-E-WAEVRA 53 (212)
Q Consensus 22 ~~kilv~vTGs~~--a~~~~~li~~L~-~-g~~V~v 53 (212)
-++||+++-||-. +.++.++...+. + +.++++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~l 37 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHF 37 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEE
Confidence 3689999999976 346666655554 3 566654
No 124
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.82 E-value=1.5e+02 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=34.1
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhcc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDR 65 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~~ 65 (212)
||||.-+++++-.- ...+++.|++ +.+|+++.++....++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 57888888888775 6678899975 489999999988887764
No 125
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.81 E-value=96 Score=27.86 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC---CCCeeEeccccccccccCCCcccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP---KDVIFYTDEDEWATWNKIGDSVLHIELR 97 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~---~~~~v~~d~~~~~~~~~~~~~~~h~~l~ 97 (212)
+++|+|+.-||=.--.+..++..|.+ ..++++|+..+........... .....|-+.++ + -+|-
T Consensus 158 ~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~d----------m--a~LM 225 (318)
T COG3980 158 KRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTND----------M--AELM 225 (318)
T ss_pred hheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchh----------H--HHHH
Confidence 55699987777555457888888865 6899999983332222111111 22233333211 1 1466
Q ss_pred ccccEEEEccC
Q 028187 98 RWADIMVIAPL 108 (212)
Q Consensus 98 ~~aD~~vVaPa 108 (212)
..+|+.|+++-
T Consensus 226 ke~d~aI~AaG 236 (318)
T COG3980 226 KEADLAISAAG 236 (318)
T ss_pred Hhcchheeccc
Confidence 77899998863
No 126
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.18 E-value=79 Score=23.69 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=53.9
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCccccccccccc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 100 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~a 100 (212)
-|||||+-.|-+ +.+.++.+++ |+++-++-|+.-. ...|.+. +
T Consensus 2 ikkvLIanrGei----a~r~~ra~r~~Gi~tv~v~s~~d~-----------------------------~s~~~~~---a 45 (110)
T PF00289_consen 2 IKKVLIANRGEI----AVRIIRALRELGIETVAVNSNPDT-----------------------------VSTHVDM---A 45 (110)
T ss_dssp SSEEEESS-HHH----HHHHHHHHHHTTSEEEEEEEGGGT-----------------------------TGHHHHH---S
T ss_pred CCEEEEECCCHH----HHHHHHHHHHhCCcceeccCchhc-----------------------------ccccccc---c
Confidence 368988877776 4456677765 7777776554211 1122232 5
Q ss_pred cEEEEcc--------CCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCC
Q 028187 101 DIMVIAP--------LSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 172 (212)
Q Consensus 101 D~~vVaP--------aTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~ 172 (212)
|-.+..| .+...|-+++ +. .....+.|- ...+-+++.+.+.++ +.|+.|+.|.
T Consensus 46 d~~~~~~~~~~~~~yl~~e~I~~ia------------~~---~g~~~i~pG-yg~lse~~~fa~~~~---~~gi~fiGp~ 106 (110)
T PF00289_consen 46 DEAYFEPPGPSPESYLNIEAIIDIA------------RK---EGADAIHPG-YGFLSENAEFAEACE---DAGIIFIGPS 106 (110)
T ss_dssp SEEEEEESSSGGGTTTSHHHHHHHH------------HH---TTESEEEST-SSTTTTHHHHHHHHH---HTT-EESSS-
T ss_pred ccceecCcchhhhhhccHHHHhhHh------------hh---hcCcccccc-cchhHHHHHHHHHHH---HCCCEEECcC
Confidence 6666666 4444443332 11 234556675 445556765555544 7999999986
Q ss_pred C
Q 028187 173 S 173 (212)
Q Consensus 173 ~ 173 (212)
+
T Consensus 107 ~ 107 (110)
T PF00289_consen 107 P 107 (110)
T ss_dssp H
T ss_pred h
Confidence 4
No 127
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=24.16 E-value=1.2e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=33.4
Q ss_pred chhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhc-C---CeEEEEe
Q 028187 10 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-W---AEVRAVA 55 (212)
Q Consensus 10 ~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~-g---~~V~vvl 55 (212)
+...++++...-+--..+|+||...-.-+..+|+.|++ + .++.|++
T Consensus 74 ~~~~~~vheq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 74 DEKKFSVHEQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred ccCCcceeEeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 33456666666676788999998887778999999986 3 3555554
No 128
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=24.09 E-value=4.7e+02 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHH
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~ 60 (212)
+..||.|.-+|.++...+..+.+. ..++++..+.++...
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~ 43 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQ 43 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHH
Confidence 346888888998887644333321 125778777776543
No 129
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.69 E-value=76 Score=24.70 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEeeChhHHHHHHHHHHHhh-cCCeEEEEecccH
Q 028187 26 LLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKSS 59 (212)
Q Consensus 26 lv~vTGs~~a~~~~~li~~L~-~g~~V~vvlT~sA 59 (212)
++|.||.++.. +++.|. ++++|+++.....
T Consensus 3 V~GatG~vG~~----l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 3 VFGATGFVGRA----LAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EETTTSHHHHH----HHHHHHHTTSEEEEEESSGG
T ss_pred EECCCChHHHH----HHHHHHHCCCEEEEEecCch
Confidence 44455555543 666765 4899999886543
No 130
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.62 E-value=3.9e+02 Score=22.63 Aligned_cols=60 Identities=7% Similarity=-0.096 Sum_probs=34.3
Q ss_pred cEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCC--CCCCCCChHHHHHHHHHhhc
Q 028187 137 PLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDY--GNGAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 137 Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~--g~g~~~~~~~i~~~v~~~~~ 201 (212)
+||+++..-..- -.++.-+..|++.|+.++-++.- .+|.. ......++++..+.+..+++
T Consensus 20 ~vvliHG~~~~~---~~w~~~~~~L~~~g~~vi~~dl~--g~G~s~~~~~~~~~~~~~~~~l~~~i~ 81 (273)
T PLN02211 20 HFVLIHGISGGS---WCWYKIRCLMENSGYKVTCIDLK--SAGIDQSDADSVTTFDEYNKPLIDFLS 81 (273)
T ss_pred eEEEECCCCCCc---CcHHHHHHHHHhCCCEEEEeccc--CCCCCCCCcccCCCHHHHHHHHHHHHH
Confidence 488887632211 12344456788789998877652 12211 11233578888877777664
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=23.45 E-value=1.3e+02 Score=26.50 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=34.3
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFID 64 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~ 64 (212)
||||.-+++++-.- +..+++.|++ +++|+++.++....++.
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS 46 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh
Confidence 79999999998876 6678999986 68999999988877765
No 132
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=23.40 E-value=1e+02 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=23.1
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEe
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvl 55 (212)
+-.++|.||||+.. ++++++...+..+|..+.
T Consensus 3 ~VaILGsTGSIG~~-tL~vi~~~p~~f~VvaLa 34 (385)
T PRK05447 3 RITILGSTGSIGTQ-TLDVIRRNPDRFRVVALS 34 (385)
T ss_pred eEEEEcCChHHHHH-HHHHHHhCccccEEEEEE
Confidence 34677889999887 567777665556777665
No 133
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=23.14 E-value=1.4e+02 Score=27.00 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=22.1
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEE
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAV 54 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~g~~V~vv 54 (212)
+||++++||+....-+..+++.+ |++|..+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~--G~~V~~v 30 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ--GYEVIGV 30 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc--CCcEEEE
Confidence 48999999999888766666543 6666544
No 134
>PLN02965 Probable pheophorbidase
Probab=23.05 E-value=3.6e+02 Score=22.14 Aligned_cols=60 Identities=5% Similarity=-0.133 Sum_probs=36.7
Q ss_pred CcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC-cccccCCCC-C-CCCCChHHHHHHHHHhhc
Q 028187 136 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS-KRLACGDYG-N-GAMAEPSLIYSTVRLFAE 201 (212)
Q Consensus 136 ~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~-g~la~g~~g-~-g~~~~~~~i~~~v~~~~~ 201 (212)
..||+++..... .-.++..++.|++.|+.|+-++. |. |... . +...+.+++.+.+..+++
T Consensus 4 ~~vvllHG~~~~---~~~w~~~~~~L~~~~~~via~Dl~G~---G~S~~~~~~~~~~~~~a~dl~~~l~ 66 (255)
T PLN02965 4 IHFVFVHGASHG---AWCWYKLATLLDAAGFKSTCVDLTGA---GISLTDSNTVSSSDQYNRPLFALLS 66 (255)
T ss_pred eEEEEECCCCCC---cCcHHHHHHHHhhCCceEEEecCCcC---CCCCCCccccCCHHHHHHHHHHHHH
Confidence 357788765432 22456788899888998887664 32 1111 1 123467888877777764
No 135
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=23.03 E-value=1.4e+02 Score=27.68 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=32.1
Q ss_pred HHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE-eCCCCcccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028187 127 CIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL-IPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES 202 (212)
Q Consensus 127 ~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~v-v~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~ 202 (212)
++.+|+-.++|+|..|-+.+ .+ .|..++.+.|+-+ ++. .. .+.+++.+.|+..+++
T Consensus 353 s~~Ea~~~gvP~l~~P~~~D----Q~---~na~~~~~~G~g~~l~~------------~~-~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGD----QP---RNAARVEEKGVGVVLDK------------ND-LTEEELRAAIREVLEN 409 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTT----HH---HHHHHHHHTTSEEEEGG------------GC--SHHHHHHHHHHHHHS
T ss_pred hhhhhhhccCCccCCCCccc----CC---ccceEEEEEeeEEEEEe------------cC-CcHHHHHHHHHHHHhh
Confidence 34456667999999998543 34 5777888888754 332 11 2456676666655543
No 136
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.98 E-value=1.5e+02 Score=26.07 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCCCeEEEEeeChhHHHHHHHHHHHhhc---CCeEEEEeccc
Q 028187 20 LRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 58 (212)
Q Consensus 20 ~~~~kilv~vTGs~~a~~~~~li~~L~~---g~~V~vvlT~s 58 (212)
.+++||+|-+||....+. +++.+.+. ..+|.+|+|..
T Consensus 68 ~~~~riavlvSg~g~nl~--~ll~~~~~g~l~~eI~~ViSn~ 107 (268)
T PLN02828 68 DPKYKIAVLASKQDHCLI--DLLHRWQDGRLPVDITCVISNH 107 (268)
T ss_pred CCCcEEEEEEcCCChhHH--HHHHhhhcCCCCceEEEEEeCC
Confidence 467799999999988875 56766664 37999999875
No 137
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.77 E-value=75 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=24.7
Q ss_pred CCeEEEEeeChhHHHH---HHHHHHHhhc-CCeEEEEecccHH
Q 028187 22 KPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKSSL 60 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~---~~~li~~L~~-g~~V~vvlT~sA~ 60 (212)
++-..||+||+.++=| +-.+++.|++ |..|-|+.-+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 4457899999999887 3357777764 8999888754433
No 138
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=22.74 E-value=1.3e+02 Score=24.15 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=24.6
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhc-CC--eEEEEecccHH
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSE-WA--EVRAVATKSSL 60 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~-g~--~V~vvlT~sA~ 60 (212)
+||++.+||+....+ .+++.+.+ +. ++..|+|....
T Consensus 1 mrI~~~~Sg~~~~~~--~~l~~l~~~~~~~~iv~Vit~~~~ 39 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLK--ALLEALKARGHNVEIVLVITNPDK 39 (181)
T ss_dssp EEEEEEESSSSHHHH--HHHHHHHTTSSEEEEEEEEESSTT
T ss_pred CEEEEEEcCCCHHHH--HHHHHHHhCCCCceEEEEeccccc
Confidence 489999999986654 45667764 54 47777776544
No 139
>PRK06196 oxidoreductase; Provisional
Probab=22.70 E-value=2e+02 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=20.9
Q ss_pred hhhccCCCCCeEEEEeeChhHHHHHHHHHHHhh-cCCeEEEEe
Q 028187 14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVA 55 (212)
Q Consensus 14 ~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~-~g~~V~vvl 55 (212)
|...+.+..|++ .|||+.+.+ ...+++.|. +|++|.++.
T Consensus 18 ~~~~~~l~~k~v--lITGasggI-G~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 18 VLAGHDLSGKTA--IVTGGYSGL-GLETTRALAQAGAHVIVPA 57 (315)
T ss_pred HhcCCCCCCCEE--EEeCCCchH-HHHHHHHHHHCCCEEEEEe
Confidence 333445555543 456654443 234566665 488876653
No 140
>PRK15456 universal stress protein UspG; Provisional
Probab=22.65 E-value=1.8e+02 Score=21.77 Aligned_cols=33 Identities=6% Similarity=-0.055 Sum_probs=23.0
Q ss_pred CCeEEEEeeChh--HHHHHHHHHHHhhc-CCeEEEE
Q 028187 22 KPRILLAASGSV--AAIKFGNLCHCFSE-WAEVRAV 54 (212)
Q Consensus 22 ~~kilv~vTGs~--~a~~~~~li~~L~~-g~~V~vv 54 (212)
-+|||+++-||- .+.++.+....|.+ +.+++++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~~~l~ll 37 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLL 37 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcCCeEEEE
Confidence 368999999983 67777777766654 4455543
No 141
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=22.64 E-value=1.1e+02 Score=28.98 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.9
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 56 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT 56 (212)
.++-.++|.||||+.. ++++++...+.++|..+..
T Consensus 57 ~KkI~ILGSTGSIGtq-tLdVI~~~pd~f~vvaLaa 91 (454)
T PLN02696 57 PKPISLLGSTGSIGTQ-TLDIVAENPDKFKVVALAA 91 (454)
T ss_pred ccEEEEecCCcHhhHH-HHHHHHhCccccEEEEEEC
Confidence 3445788999999886 6777877654456655543
No 142
>PLN02356 phosphateglycerate kinase
Probab=22.63 E-value=75 Score=29.75 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=40.2
Q ss_pred cchhhhhhccCCC-CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhc
Q 028187 9 TDREAMQVNTGLR-KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFID 64 (212)
Q Consensus 9 ~~~~~~~~~~~~~-~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~ 64 (212)
+|.++....-.+. +..++++.|++.+..-+..+.+.+.++..|-+|+++++.+.++
T Consensus 342 sd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~~g~~VV~Il~d~G~kyl~ 398 (423)
T PLN02356 342 TDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 398 (423)
T ss_pred CHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhh
Confidence 4555555555553 4589999888876666666666654577899999999988765
No 143
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=22.58 E-value=69 Score=24.35 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 64 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~ 64 (212)
+..+++.-||.....--+++.+.|++ |..|.+.-|++|.+-.+
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~AcrtyN 97 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRNACATFN 97 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 34577888998744446677778875 99999999999987544
No 144
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=22.57 E-value=27 Score=32.66 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=43.9
Q ss_pred cccEEEEccCCHHHHHHHHccccCcHH--HHHHHhhc--CCCcEEEEeccChhhhhChHHHHHHH-----HHHHCCCEEe
Q 028187 99 WADIMVIAPLSANTLGKIAGGLCDNLL--TCIVRAWD--YNKPLFVAPAMNTFMWNNPFTERHLM-----SIDELGISLI 169 (212)
Q Consensus 99 ~aD~~vVaPaTaNtlaKiA~GiaDnll--t~~~~a~~--~~~Pvvi~Pamn~~m~~~P~~~~nl~-----~L~~~G~~vv 169 (212)
+.|...|--|| ||--.+|. ..+++..+ .+.+++++|+ ...+..+-++ .|.+.|+.|.
T Consensus 291 ~id~v~IGSCT--------ngr~eDl~~AA~iLkG~kv~~~vr~~v~P~------S~~v~~~a~~~G~~~~l~~aGa~i~ 356 (419)
T TIGR02083 291 KIDQVVIGSCT--------NGRLEDLRLAAEILKGKTVAPDVRCIIIPG------SQNVYLEAMKEGLLEIFIEAGAVVS 356 (419)
T ss_pred ccCeEEEEcCC--------CCChHHHHHHHHHHcCCCCCCCccEEEeCC------CHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 34555554444 55434442 23444432 3577999998 3433333333 5788999999
Q ss_pred CCCCcccccCCCCCCCCCChH
Q 028187 170 PPVSKRLACGDYGNGAMAEPS 190 (212)
Q Consensus 170 ~P~~g~la~g~~g~g~~~~~~ 190 (212)
+|..| .|-..+.|.+.+-|
T Consensus 357 ~pgCg--~C~G~~~g~l~~ge 375 (419)
T TIGR02083 357 TPTCG--PCLGGHMGILAEGE 375 (419)
T ss_pred CCccc--cccCcCCCcCCCCC
Confidence 98665 46555566666654
No 145
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.49 E-value=1.2e+02 Score=26.58 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHHHHhhc---CCeEEEEeccc
Q 028187 19 GLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 58 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~---g~~V~vvlT~s 58 (212)
..+++||.|.+||....+. .+++..+. +++|.+++|..
T Consensus 86 ~~~~~ri~vl~Sg~gsnl~--al~~~~~~~~~~~~i~~visn~ 126 (286)
T PRK06027 86 SAERKRVVILVSKEDHCLG--DLLWRWRSGELPVEIAAVISNH 126 (286)
T ss_pred cccCcEEEEEEcCCCCCHH--HHHHHHHcCCCCcEEEEEEEcC
Confidence 4567899999999977765 45666654 57999998875
No 146
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.46 E-value=75 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=30.1
Q ss_pred CCCCCeEEEEeeChhHHHH---HHHHHHHhhc-CCeEEEEecccHH
Q 028187 19 GLRKPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKSSL 60 (212)
Q Consensus 19 ~~~~~kilv~vTGs~~a~~---~~~li~~L~~-g~~V~vvlT~sA~ 60 (212)
....+-..||+||..++=| +-.|++.|++ |+.|-|+.=+...
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 3445556899999998887 3357777875 9999988754433
No 147
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=22.06 E-value=1.6e+02 Score=26.63 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=23.3
Q ss_pred CeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028187 23 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 56 (212)
Q Consensus 23 ~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT 56 (212)
+|+++++||+....-+..++.. .|++|..+.-
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G~~V~~v~~ 32 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QGYEVVGVFM 32 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cCCeEEEEEE
Confidence 4899999999888876666554 3777765543
No 148
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=21.85 E-value=1.8e+02 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHhhc-CCeEEEEecccHH
Q 028187 38 FGNLCHCFSE-WAEVRAVATKSSL 60 (212)
Q Consensus 38 ~~~li~~L~~-g~~V~vvlT~sA~ 60 (212)
...+++.|++ |+||+++..+...
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 5678999986 9999999986653
No 149
>PRK07806 short chain dehydrogenase; Provisional
Probab=21.82 E-value=1.2e+02 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCC
Q 028187 184 GAMAEPSLIYSTVRLFAESRNQSG 207 (212)
Q Consensus 184 g~~~~~~~i~~~v~~~~~~~~l~~ 207 (212)
+++.+++|+.+.+..++......|
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~g 234 (248)
T PRK07806 211 GKLYTVSEFAAEVARAVTAPVPSG 234 (248)
T ss_pred cccCCHHHHHHHHHHHhhccccCc
Confidence 477899999999887776444444
No 150
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=21.73 E-value=1.2e+02 Score=27.16 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=16.2
Q ss_pred EeeChhHHHHHHHHHHHhh-cCCeEEEEe
Q 028187 28 AASGSVAAIKFGNLCHCFS-EWAEVRAVA 55 (212)
Q Consensus 28 ~vTGs~~a~~~~~li~~L~-~g~~V~vvl 55 (212)
.|||+.+-. ...+++.|. +|++|..+-
T Consensus 25 lVtGgtGfI-G~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 25 CITGAGGFI-ASHIARRLKAEGHYIIASD 52 (370)
T ss_pred EEECCccHH-HHHHHHHHHhCCCEEEEEE
Confidence 345553332 345677776 489998764
No 151
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=1.7e+02 Score=26.93 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEe
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvl 55 (212)
+++|++++.||+....-+..+++. +|+||.-+.
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QGyeViGl~ 34 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QGYEVIGLF 34 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cCCeEEEEE
Confidence 467999999999887765544433 388886443
No 152
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=21.55 E-value=4.6e+02 Score=21.48 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=40.4
Q ss_pred CCCcEEEE-eccChhhhhChHHHHHHHHHHH-CCCEEeC--CCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCC
Q 028187 134 YNKPLFVA-PAMNTFMWNNPFTERHLMSIDE-LGISLIP--PVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDG 209 (212)
Q Consensus 134 ~~~Pvvi~-Pamn~~m~~~P~~~~nl~~L~~-~G~~vv~--P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~ 209 (212)
.++|++++ |.+ ..+-+.+.+-++.+ +.+.++- +..+.+...+.| +---++..+.+++.+.+|+|-+
T Consensus 35 AkrPLlivGp~~-----~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~-----~~~~~lh~it~~l~Dp~w~G~d 104 (170)
T COG1880 35 AKRPLLIVGPLA-----LDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIG-----SEYINLHAITQYLTDPNWPGFD 104 (170)
T ss_pred cCCceEEecccc-----cCHHHHHHHHHHHHhcCCceEecchhhcchhhcccc-----cchhHHHHHHHHhcCCCCCCcC
Confidence 48898877 443 35677788888866 4577764 222322221222 2234566777888888888854
No 153
>PRK14031 glutamate dehydrogenase; Provisional
Probab=21.50 E-value=5.6e+02 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred hChHHHHHHHHHHHCCCEEeCC
Q 028187 150 NNPFTERHLMSIDELGISLIPP 171 (212)
Q Consensus 150 ~~P~~~~nl~~L~~~G~~vv~P 171 (212)
++|.+.+..+.|.+.|+.++|-
T Consensus 344 N~P~t~eA~~~L~~rgI~~~PD 365 (444)
T PRK14031 344 NMPSTPEAIKVFQDAKILYAPG 365 (444)
T ss_pred CCCCCHHHHHHHHHCCcEEeCh
Confidence 6788889999999999999974
No 154
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=21.36 E-value=55 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=35.6
Q ss_pred cchhhhhhccCCC-CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhc
Q 028187 9 TDREAMQVNTGLR-KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFID 64 (212)
Q Consensus 9 ~~~~~~~~~~~~~-~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~ 64 (212)
+|.++......+- ..+++++.+|+.+..-+..+.+.+ ++..|-+|+++++.+..+
T Consensus 231 ~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~ 286 (290)
T TIGR01138 231 HQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICDRGDRYLS 286 (290)
T ss_pred CHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC-CCCeEEEEECCCCccccC
Confidence 3455555554443 357888888776555555555555 356889999999987654
No 155
>PLN00021 chlorophyllase
Probab=21.36 E-value=1.8e+02 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=25.3
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028187 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 173 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~ 173 (212)
+.|+|++ ++..++.+-.+..-++.|.+.|+.|+-|+.
T Consensus 51 ~~PvVv~--lHG~~~~~~~y~~l~~~Las~G~~VvapD~ 87 (313)
T PLN00021 51 TYPVLLF--LHGYLLYNSFYSQLLQHIASHGFIVVAPQL 87 (313)
T ss_pred CCCEEEE--ECCCCCCcccHHHHHHHHHhCCCEEEEecC
Confidence 3576665 344455555566677889999999998873
No 156
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.33 E-value=1.6e+02 Score=25.03 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEe
Q 028187 22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55 (212)
Q Consensus 22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvl 55 (212)
.++++|++|||+...-+..++... |.+|..+.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~--g~~v~av~ 43 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA--GTEVLAIT 43 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh--CCCEEEEE
Confidence 468999999999888776666554 66665443
No 157
>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=1.6e+02 Score=24.36 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028187 124 LLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 173 (212)
Q Consensus 124 llt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~ 173 (212)
|+++++.+ -.+.|-+-|.- ..--.++-+++||++|..+|+.|-.|..
T Consensus 10 LAssVl~c--GKkKvWlDpNE-~~eI~~ansRq~irkLikdg~iI~Kp~~ 56 (193)
T KOG1696|consen 10 LAASVLKC--GKKKVWLDPNE-ISEISGANSRQNIRKLIKDGLIIRKPVT 56 (193)
T ss_pred HHHHHHHh--cccceeeCccH-HHHhcccchHHHHHHHHhCCeEeecchh
Confidence 44555554 24567676752 2333466788999999999999998876
No 158
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=20.97 E-value=42 Score=31.38 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=38.6
Q ss_pred HccccCcHHH--HHHHhhc--CCCcEEEEeccChhhhhChHHHHHHH------HHHHCCCEEeCCCCcccccCCCCCCCC
Q 028187 117 AGGLCDNLLT--CIVRAWD--YNKPLFVAPAMNTFMWNNPFTERHLM------SIDELGISLIPPVSKRLACGDYGNGAM 186 (212)
Q Consensus 117 A~GiaDnllt--~~~~a~~--~~~Pvvi~Pamn~~m~~~P~~~~nl~------~L~~~G~~vv~P~~g~la~g~~g~g~~ 186 (212)
.||--++|.. .+++..+ .+.+++++|+ +..+.+.++ .|.+.|+.|.+|..| +|-..+.+.+
T Consensus 295 Tngr~~Dl~~aA~vLkG~kv~~~v~~~v~P~-------S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg--~C~G~~~g~~ 365 (412)
T TIGR02086 295 TNGRIEDLRIAAEILEGRRVHPDVRLIVVPA-------SRKVYERALEEGIILTLIRAGAIICPPGCG--PCLGRHMGVL 365 (412)
T ss_pred CCCChHHHHHHHHHHcCCCCCCCcCEEEeCC-------CHHHHHHHHHcCcHHHHHHcCCEEcCCccc--cccCcCCCcC
Confidence 3444444432 3444432 3578999998 334444443 478889999988665 4655556666
Q ss_pred CChH
Q 028187 187 AEPS 190 (212)
Q Consensus 187 ~~~~ 190 (212)
.+-|
T Consensus 366 ~~ge 369 (412)
T TIGR02086 366 GDGE 369 (412)
T ss_pred CCCC
Confidence 5544
No 159
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=20.63 E-value=1.1e+02 Score=18.83 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.5
Q ss_pred hChHHHHHHHHHHHCCCE
Q 028187 150 NNPFTERHLMSIDELGIS 167 (212)
Q Consensus 150 ~~P~~~~nl~~L~~~G~~ 167 (212)
..+.+.+||+.|++.|+.
T Consensus 28 s~~~vs~hL~~L~~~glV 45 (47)
T PF01022_consen 28 SQSTVSHHLKKLREAGLV 45 (47)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHCcCe
Confidence 456888999999999974
No 160
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=20.57 E-value=1e+02 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=26.7
Q ss_pred EEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecc
Q 028187 25 ILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATK 57 (212)
Q Consensus 25 ilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~ 57 (212)
++=|++||+...++..+.+.+.+ ||.|.|+=-+
T Consensus 80 l~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 80 LFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred EEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 44579999999999999999975 9888877543
No 161
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.50 E-value=80 Score=29.25 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028187 26 LLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 56 (212)
Q Consensus 26 lv~vTGs~~a~~~~~li~~L~~g~~V~vvlT 56 (212)
++|.||||+.. ++++++...+.++|..+.-
T Consensus 1 ILGsTGSIG~q-tLdVi~~~~d~f~v~~Laa 30 (383)
T PRK12464 1 ILGSTGSIGTS-ALDVVSAHPEHFKVVGLTA 30 (383)
T ss_pred CCccccHHHHH-HHHHHHhCccccEEEEEEC
Confidence 36888888775 6777777655566665543
No 162
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=20.41 E-value=2.1e+02 Score=23.10 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=10.5
Q ss_pred hhcCCCcEEEEec
Q 028187 131 AWDYNKPLFVAPA 143 (212)
Q Consensus 131 a~~~~~Pvvi~Pa 143 (212)
+...+||++++|+
T Consensus 81 ~~rl~kplIv~pr 93 (161)
T COG5017 81 LLRLDKPLIVVPR 93 (161)
T ss_pred HhhcCCcEEEEEC
Confidence 3446899999998
No 163
>PRK12746 short chain dehydrogenase; Provisional
Probab=20.38 E-value=2e+02 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHHhhcC
Q 028187 183 NGAMAEPSLIYSTVRLFAES 202 (212)
Q Consensus 183 ~g~~~~~~~i~~~v~~~~~~ 202 (212)
.+++.+++++.+.+..++++
T Consensus 217 ~~~~~~~~dva~~~~~l~~~ 236 (254)
T PRK12746 217 FGRIGQVEDIADAVAFLASS 236 (254)
T ss_pred cCCCCCHHHHHHHHHHHcCc
Confidence 36677899999998777654
No 164
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=20.28 E-value=2.4e+02 Score=20.82 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.2
Q ss_pred CCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEE
Q 028187 21 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAV 54 (212)
Q Consensus 21 ~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vv 54 (212)
.++.++|..+|+.. ..+.+..+.|.+ |.++.++
T Consensus 8 ~g~di~iia~G~~~-~~al~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 8 EGADITIIAYGSMV-EEALEAAEELEEEGIKAGVI 41 (124)
T ss_dssp SSSSEEEEEETTHH-HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeehHHH-HHHHHHHHHHHHcCCceeEE
Confidence 45679999999964 557888888874 8777776
No 165
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.13 E-value=2.2e+02 Score=24.75 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=33.2
Q ss_pred eEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhc
Q 028187 24 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFID 64 (212)
Q Consensus 24 kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~ 64 (212)
||||.-+++++-.- +..+++.|++ +++|+++.++....++.
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 79999999998876 5568888875 68999999987776654
No 166
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=20.11 E-value=1.6e+02 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC----CCcccc--cCCCCCCCCCChHHHHHHHHHh
Q 028187 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP----VSKRLA--CGDYGNGAMAEPSLIYSTVRLF 199 (212)
Q Consensus 135 ~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P----~~g~la--~g~~g~g~~~~~~~i~~~v~~~ 199 (212)
+.|+.++-+=-..+..-| +-||.|...|+.|+.- .++|+. +|-.-..++.+++++.+.+...
T Consensus 141 rtpv~VV~aG~KsILDi~---~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~ 208 (293)
T PF04227_consen 141 RTPVAVVCAGAKSILDIP---KTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAH 208 (293)
T ss_dssp TS-EEEEESBB-TTS-HH---HHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHH
T ss_pred cCCceEEEccCcchhchH---HHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHH
Confidence 778888877666677777 7788999999999963 334443 2322335778888888877543
No 167
>PRK06194 hypothetical protein; Provisional
Probab=20.05 E-value=1.6e+02 Score=24.67 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=11.1
Q ss_pred CChHHHHHHHHHhhc
Q 028187 187 AEPSLIYSTVRLFAE 201 (212)
Q Consensus 187 ~~~~~i~~~v~~~~~ 201 (212)
.+++++++.+...+.
T Consensus 237 ~s~~dva~~i~~~~~ 251 (287)
T PRK06194 237 VTAEEVAQLVFDAIR 251 (287)
T ss_pred CCHHHHHHHHHHHHH
Confidence 488888888876553
No 168
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1.3e+02 Score=27.85 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=40.6
Q ss_pred CCCcEEEEeccChhhhhChHHHHHH-----HHHHHC-CCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHh
Q 028187 134 YNKPLFVAPAMNTFMWNNPFTERHL-----MSIDEL-GISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF 199 (212)
Q Consensus 134 ~~~Pvvi~Pamn~~m~~~P~~~~nl-----~~L~~~-G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~ 199 (212)
.+.|||+-=+--..+.+++ +|+ +.|++- |+..+.=..+++.|++ -++++++++.+.+.
T Consensus 265 S~APVIFSHSsA~~vcns~---rNVPDdVL~llk~NgGvVMVnfy~~~isc~~-----~A~v~~v~~Hi~hI 328 (419)
T KOG4127|consen 265 SRAPVIFSHSSAYSVCNSS---RNVPDDVLQLLKENGGVVMVNFYPGFISCSD-----RATVSDVADHINHI 328 (419)
T ss_pred hcCceEeecccHHHHhcCc---cCCcHHHHHHHhhcCCEEEEEeecccccCCC-----cccHHHHHHHHHHH
Confidence 4779999877666777777 554 345554 7777777778888964 44577887777543
No 169
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.04 E-value=7.6e+02 Score=25.83 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCeEEEEeeChhHH-------HHHHHHHHHhhc-CCeEEEEecc
Q 028187 22 KPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATK 57 (212)
Q Consensus 22 ~~kilv~vTGs~~a-------~~~~~li~~L~~-g~~V~vvlT~ 57 (212)
.|||||.-+|++.. |...++++.|++ |++|-++=+.
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~n 49 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSN 49 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecc
Confidence 35788877776432 224567888886 8877666443
Done!