Query 028189
Match_columns 212
No_of_seqs 134 out of 740
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 12:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 96.3 0.0043 1.5E-07 42.6 4.2 33 15-47 10-42 (88)
2 2xtc_A F-box-like/WD repeat-co 95.9 0.007 2.4E-07 41.8 3.6 37 11-47 1-37 (90)
3 1vyh_C Platelet-activating fac 90.9 0.044 1.5E-06 46.9 0.0 54 15-75 8-61 (410)
4 2d68_A FOP, FGFR1OP; alpha hel 87.7 0.96 3.3E-05 30.5 4.8 31 16-46 19-49 (82)
5 2nxp_A Transcription initiatio 86.5 0.86 2.9E-05 34.4 4.6 64 88-153 50-113 (156)
6 2j4b_A TAF5, transcription ini 79.6 2.8 9.7E-05 30.8 4.9 47 88-137 31-77 (138)
7 2j49_A Transcription initiatio 74.1 1.4 4.9E-05 32.9 1.9 46 89-137 34-79 (148)
8 2xz2_A CSTF-50, isoform B; RNA 63.5 6.6 0.00023 25.1 3.1 32 14-45 15-46 (66)
9 4a18_Q RPL36, 60S ribosomal pr 42.7 34 0.0011 23.8 4.2 45 92-136 51-98 (104)
10 2dna_A Unnamed protein product 42.6 23 0.0008 22.6 3.1 25 57-81 34-60 (67)
11 3sxm_A Transcriptional regulat 42.1 35 0.0012 23.8 4.5 32 51-82 97-128 (140)
12 1y0n_A Hypothetical UPF0270 pr 40.0 26 0.0009 23.1 3.1 43 12-68 9-51 (78)
13 1oyi_A Double-stranded RNA-bin 39.8 15 0.00052 24.4 2.0 47 14-69 14-60 (82)
14 3mkr_A Coatomer subunit epsilo 39.1 1.4E+02 0.0048 23.5 11.1 91 16-119 65-157 (291)
15 2cp9_A EF-TS, EF-TSMT, elongat 38.7 18 0.00062 22.9 2.1 20 60-79 27-48 (64)
16 2bwb_A Ubiquitin-like protein 38.7 34 0.0012 19.9 3.3 12 66-77 33-44 (46)
17 3sjr_A Uncharacterized protein 37.0 1.1E+02 0.0039 22.9 6.5 61 77-138 102-163 (175)
18 2vgx_A Chaperone SYCD; alterna 35.7 1.1E+02 0.0037 21.2 10.8 92 20-120 26-117 (148)
19 2knz_A Ubiquilin-4; cytoplasm, 34.5 39 0.0013 20.2 3.1 14 66-79 37-50 (53)
20 1xi4_A Clathrin heavy chain; a 34.0 3E+02 0.01 28.3 10.8 114 16-144 1196-1329(1630)
21 2eap_A Lymphocyte cytosolic pr 33.5 29 0.00098 23.5 2.5 24 21-45 26-49 (90)
22 1whc_A RSGI RUH-027, UBA/UBX 3 33.5 52 0.0018 20.5 3.7 16 66-81 35-50 (64)
23 1wr1_B Ubiquitin-like protein 32.8 51 0.0017 20.2 3.5 22 58-79 33-56 (58)
24 2jy5_A Ubiquilin-1; UBA, alter 32.4 47 0.0016 19.7 3.3 21 58-78 28-50 (52)
25 2dah_A Ubiquilin-3; UBA domain 32.3 58 0.002 19.6 3.7 14 66-79 35-48 (54)
26 3ma5_A Tetratricopeptide repea 31.8 1E+02 0.0034 19.6 6.4 71 62-137 16-88 (100)
27 4ae4_A Ubiquitin-associated pr 31.0 41 0.0014 23.8 3.3 23 57-79 90-114 (118)
28 3c1q_A General secretion pathw 30.7 98 0.0034 21.1 5.3 67 55-142 49-120 (123)
29 3q15_A PSP28, response regulat 30.5 2.1E+02 0.0072 22.9 8.3 108 12-122 6-131 (378)
30 1vej_A Riken cDNA 4931431F19; 29.1 45 0.0015 21.7 2.9 23 57-79 44-68 (74)
31 3u4t_A TPR repeat-containing p 27.7 1.9E+02 0.0064 21.4 11.2 18 62-79 46-63 (272)
32 1z96_A DNA-damage, UBA-domain 27.3 71 0.0024 17.3 3.3 11 66-76 29-39 (40)
33 2y4t_A DNAJ homolog subfamily 26.7 2.5E+02 0.0086 22.6 12.4 59 60-119 264-322 (450)
34 3uq3_A Heat shock protein STI1 26.5 1.9E+02 0.0063 21.0 8.7 53 62-119 182-234 (258)
35 3ieg_A DNAJ homolog subfamily 25.9 2.2E+02 0.0077 21.8 13.6 28 158-185 322-349 (359)
36 3izc_k 60S ribosomal protein R 25.6 25 0.00085 24.3 1.2 46 92-137 50-95 (100)
37 3iko_C Nucleoporin NUP84; NPC, 25.3 50 0.0017 29.1 3.4 25 55-79 179-203 (460)
38 2dak_A Ubiquitin carboxyl-term 25.1 54 0.0018 20.2 2.7 17 66-82 34-50 (63)
39 2wpv_A GET4, UPF0363 protein Y 24.6 2.8E+02 0.0094 22.9 7.7 31 56-86 16-46 (312)
40 2kc7_A BFR218_protein; tetratr 24.3 1.3E+02 0.0045 18.5 8.8 59 59-122 6-65 (99)
41 1ify_A HHR23A, UV excision rep 24.2 54 0.0018 19.2 2.4 22 58-79 23-46 (49)
42 1wgn_A UBAP1, ubiquitin associ 24.0 1E+02 0.0035 19.3 3.7 23 57-79 33-57 (63)
43 2g3q_A Protein YBL047C; endocy 23.9 81 0.0028 17.6 3.1 13 66-78 29-41 (43)
44 1m45_B IQ2, IQ2 motif from MYO 23.4 28 0.00096 17.3 0.8 16 108-123 2-17 (26)
45 1wji_A Tudor domain containing 23.4 99 0.0034 19.1 3.7 15 66-80 34-48 (63)
46 4b4t_R RPN7, 26S proteasome re 23.3 2.1E+02 0.0071 24.4 7.0 103 18-123 133-239 (429)
47 3ihu_A Transcriptional regulat 23.1 91 0.0031 23.8 4.3 28 53-80 182-209 (222)
48 2dba_A Smooth muscle cell asso 22.8 1.7E+02 0.0057 19.2 13.5 110 14-130 27-137 (148)
49 3sxy_A Transcriptional regulat 22.5 95 0.0033 23.6 4.3 31 51-81 172-202 (218)
50 3lpz_A GET4 (YOR164C homolog); 22.3 3.4E+02 0.012 22.6 8.5 99 4-103 124-251 (336)
51 1vek_A UBP14, ubiquitin-specif 22.0 1E+02 0.0035 20.3 3.7 24 58-81 44-70 (84)
52 2ekk_A UBA domain from E3 ubiq 21.9 55 0.0019 18.8 2.1 14 66-79 33-46 (47)
53 3mkq_A Coatomer beta'-subunit; 21.9 2.1E+02 0.007 25.6 7.0 50 15-79 629-678 (814)
54 2pm7_A Protein WEB1, protein t 21.8 58 0.002 28.0 3.1 24 56-79 146-169 (399)
55 2crn_A Ubash3A protein; compac 21.5 1.1E+02 0.0039 18.9 3.7 23 58-80 24-49 (64)
56 3qwp_A SET and MYND domain-con 20.7 3.9E+02 0.013 22.6 10.9 122 59-193 293-427 (429)
57 2v5f_A Prolyl 4-hydroxylase su 20.7 1.8E+02 0.0062 18.8 7.4 59 61-119 13-73 (104)
58 2hs5_A Putative transcriptiona 20.4 1.2E+02 0.0041 23.6 4.5 25 55-79 196-220 (239)
59 2di3_A Bacterial regulatory pr 20.2 1.2E+02 0.0042 23.3 4.5 28 53-80 192-219 (239)
60 3r8n_T 30S ribosomal protein S 20.1 1.1E+02 0.0039 20.2 3.6 29 57-85 30-58 (85)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.30 E-value=0.0043 Score=42.65 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCC
Q 028189 15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQP 47 (212)
Q Consensus 15 ~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~ 47 (212)
+++||+-|++||...||.+++.+|.+|++++.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999987643
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.89 E-value=0.007 Score=41.81 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=33.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCC
Q 028189 11 IAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQP 47 (212)
Q Consensus 11 ~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~ 47 (212)
++++.+++|.||-.||...||..||-+|.+|+++..+
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 4678999999999999999999999999999987644
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=90.87 E-value=0.044 Score=46.93 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Q 028189 15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIEL 75 (212)
Q Consensus 15 ~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~ 75 (212)
+++++++|++||..+||.+++.+|.+|++++... ........++++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-------ELDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-------chhhhhhchhhhhhhheeeH
Confidence 5689999999999999999999999999875322 11233345666777666553
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=87.73 E-value=0.96 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCC
Q 028189 16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQ 46 (212)
Q Consensus 16 ~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~ 46 (212)
..++.||.+||...||.=|+..|..|+|.+.
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 3588999999999999999999999999863
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=86.47 E-value=0.86 Score=34.38 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=47.1
Q ss_pred ccchhhhhHHHHHHHHhccChHHHHHHHHHhcCccCCchhHHHHHHHHHhHhccCCCCCCchhhhC
Q 028189 88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLL 153 (212)
Q Consensus 88 ~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~~s~~~~l~ 153 (212)
..+.|=+-+.-|++|+.+|...+|-.|..+.-..+. +.+.+.++++.++.--.+..+.++...+
T Consensus 50 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 50 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 468899999999999999999999999998666664 6777888877665443333344443333
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=79.56 E-value=2.8 Score=30.83 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=36.1
Q ss_pred ccchhhhhHHHHHHHHhccChHHHHHHHHHhcCccCCchhHHHHHHHHHh
Q 028189 88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (212)
Q Consensus 88 ~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (212)
+.+.|=+-+..|++|+.+|...+|-.|..+.-..+. .. .++++++.+
T Consensus 31 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~ 77 (138)
T 2j4b_A 31 LPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFES 77 (138)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhc
Confidence 468899999999999999999999999987665554 23 566665544
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=74.14 E-value=1.4 Score=32.91 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=35.8
Q ss_pred cchhhhhHHHHHHHHhccChHHHHHHHHHhcCccCCchhHHHHHHHHHh
Q 028189 89 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (212)
Q Consensus 89 ~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (212)
.+.|=+-+..|++|+.+| ..+|-.|..+.-..+. +.+..+++.+.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhc
Confidence 578999999999999999 9999999987655554 455566664443
No 8
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=63.53 E-value=6.6 Score=25.10 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCC
Q 028189 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMK 45 (212)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~ 45 (212)
+++.|-|||..=|..-||...|..+.+..+..
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 47889999999999999999999999987754
No 9
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=42.70 E-value=34 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHhccC---hHHHHHHHHHhcCccCCchhHHHHHHHHH
Q 028189 92 FDLLSLHFVELVCSRK---CTEALEFAQTKLTPFGKVQKYVEKLEDFM 136 (212)
Q Consensus 92 F~L~~q~fIEli~~~~---~~eAi~~ar~~l~~~~~~~~~~~~l~~~~ 136 (212)
|-=+-.+.+|||+.+. --.|+.|+++.+..+..-....++++.+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl 98 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAV 98 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5556678899999998 78899999999877652233444555443
No 10
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.65 E-value=23 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=17.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhcH
Q 028189 57 RKRILHFAL--EGNALKAIELTEELAQ 81 (212)
Q Consensus 57 r~~I~~~I~--~G~i~~Ai~~~~~~~p 81 (212)
|+...+++. .||++.|++|+-.+-+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 445444444 6999999999987644
No 11
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=42.12 E-value=35 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcHH
Q 028189 51 LEDMEMRKRILHFALEGNALKAIELTEELAQD 82 (212)
Q Consensus 51 ~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~ 82 (212)
...+.....|.++|..||.+.|...+..|.-.
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~~ 128 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLKN 128 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999998887543
No 12
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=40.02 E-value=26 Score=23.09 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 028189 12 AINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGN 68 (212)
Q Consensus 12 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~ 68 (212)
..+.+.|++||-+|..|+|-- .|.+. ..-....+++..+.+|+
T Consensus 9 ~L~~eTL~nLIeefv~RegtD---------yg~E~-----sL~~kv~qv~~qL~~Ge 51 (78)
T 1y0n_A 9 LLEADTLNNLLEDFVTREGTD---------NGDET-----PLDVRVERARHALRRGE 51 (78)
T ss_dssp GSCHHHHHHHHHHHHHCC----------------C-----CHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHhccccc---------ccccc-----cHHHHHHHHHHHHHcCC
Confidence 467889999999999999974 12111 11145578888888886
No 13
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=39.84 E-value=15 Score=24.44 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCCH
Q 028189 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNA 69 (212)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~i 69 (212)
+...+.+-|+++|...| -++..++++.|++.. ..|+.+..+-.+|-+
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~-------aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR-------EVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH-------HHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH-------HHHHHHHHHHHCCCE
Confidence 44566777889999999 899999999997532 466677777666654
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.05 E-value=1.4e+02 Score=23.48 Aligned_cols=91 Identities=9% Similarity=-0.045 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhc-HHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHhccCccchhh
Q 028189 16 NDIHNIVLSYLVHNC-YKETVDSFISCTGMK-QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFD 93 (212)
Q Consensus 16 ~~l~~lI~~yL~~~G-y~eta~~f~~es~~~-~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~ 93 (212)
......+++|+...| +.++...|.+-.... .|. .....-. .=.-....|++++|++++++ | .+....+.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~~~~--la~~~~~~g~~~~Al~~l~~--~----~~~~~~~~ 135 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFLLM--AASIYFYDQNPDAALRTLHQ--G----DSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHHHH--HHHHHHHTTCHHHHHHHHTT--C----CSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHHHHH--HHHHHHHCCCHHHHHHHHhC--C----CCHHHHHH
Confidence 345566778888877 444455554422211 122 1111111 11234467888888888776 2 11111111
Q ss_pred hhHHHHHHHHhccChHHHHHHHHHhc
Q 028189 94 LLSLHFVELVCSRKCTEALEFAQTKL 119 (212)
Q Consensus 94 L~~q~fIEli~~~~~~eAi~~ar~~l 119 (212)
.-.=+++.|+..+|+...++-+
T Consensus 136 ----l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 ----TVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHCCCHHHHHHHHHHHH
Confidence 1112345677777777666543
No 15
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=38.74 E-value=18 Score=22.92 Aligned_cols=20 Identities=10% Similarity=-0.145 Sum_probs=15.2
Q ss_pred HHHHHH--cCCHHHHHHHHHHh
Q 028189 60 ILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 60 I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
-+++|. +||++.|++|+++.
T Consensus 27 cKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 27 CKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 344444 79999999999865
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=38.69 E-value=34 Score=19.88 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=10.3
Q ss_pred cCCHHHHHHHHH
Q 028189 66 EGNALKAIELTE 77 (212)
Q Consensus 66 ~G~i~~Ai~~~~ 77 (212)
.||++.|++|+-
T Consensus 33 ~gnv~~Ave~L~ 44 (46)
T 2bwb_A 33 GGSVQGALDSLL 44 (46)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 699999999974
No 17
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=37.02 E-value=1.1e+02 Score=22.87 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=40.4
Q ss_pred HHhcHHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhcCccCC-chhHHHHHHHHHhH
Q 028189 77 EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMAL 138 (212)
Q Consensus 77 ~~~~p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~-~~~~~~~l~~~~~l 138 (212)
...++.-...|+++.+.=..+.|+++|+.| +++-..-||..|.-+.- +......|.++..|
T Consensus 102 T~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~L 163 (175)
T 3sjr_A 102 EILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHH
Confidence 344455566789999999999999999965 55555555655544432 35555566655554
No 18
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.68 E-value=1.1e+02 Score=21.24 Aligned_cols=92 Identities=11% Similarity=-0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHhccCccchhhhhHHHH
Q 028189 20 NIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHF 99 (212)
Q Consensus 20 ~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~f 99 (212)
.+-..|+...-|.++...|.+-..+. |. +......+ =.-....|++++|++.+.+-- .+...++...|.+ =
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~l--g~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~l----g 96 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HY-DSRFFLGL--GACRQAMGQYDLAIHSYSYGA-VMDIXEPRFPFHA----A 96 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHHH--HHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----H
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cc-cHHHHHHH--HHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHH----H
Confidence 34444444445666666666544432 21 22332222 223456899999999987642 2222333343333 1
Q ss_pred HHHHhccChHHHHHHHHHhcC
Q 028189 100 VELVCSRKCTEALEFAQTKLT 120 (212)
Q Consensus 100 IEli~~~~~~eAi~~ar~~l~ 120 (212)
.=+...|+..+|+.+.++-+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 123467899999988886544
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=34.51 E-value=39 Score=20.20 Aligned_cols=14 Identities=29% Similarity=0.112 Sum_probs=11.9
Q ss_pred cCCHHHHHHHHHHh
Q 028189 66 EGNALKAIELTEEL 79 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~ 79 (212)
.||++.|++|+-.+
T Consensus 37 ~gnve~Ave~L~~~ 50 (53)
T 2knz_A 37 GGDINAAIERLLGS 50 (53)
T ss_dssp TSCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHc
Confidence 68999999998664
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=33.96 E-value=3e+02 Score=28.29 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHh-cHHHhccCc-----c
Q 028189 16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEEL-AQDLLEKNK-----D 89 (212)
Q Consensus 16 ~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~-~p~ll~~~~-----~ 89 (212)
..+.+ +++|+...|.++.|..+-+.++ .--+...-.+.-|+++.|++....- .+...+.-. .
T Consensus 1196 ad~~~-iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1196 AHIQQ-VGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 44554 9999999999999999887653 1112333444559999999888543 222211100 1
Q ss_pred chhhhhHHHHHHHH--------------hccChHHHHHHHHHhcCccCCchhHHHHHHHHHhHhccCCC
Q 028189 90 LHFDLLSLHFVELV--------------CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEP 144 (212)
Q Consensus 90 l~F~L~~q~fIEli--------------~~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~ 144 (212)
=+|+|-++..+.++ +.|..++||.+..+-+. .++.++....++.-+.+--.|
T Consensus 1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCH
Confidence 12555555444332 34778888888876542 134555555555555554333
No 21
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.52 E-value=29 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhCCC
Q 028189 21 IVLSYLVHNCYKETVDSFISCTGMK 45 (212)
Q Consensus 21 lI~~yL~~~Gy~eta~~f~~es~~~ 45 (212)
=|++||-..||.+ ++.|++...+.
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 4789999999999 89998665553
No 22
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.46 E-value=52 Score=20.47 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHhcH
Q 028189 66 EGNALKAIELTEELAQ 81 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~~p 81 (212)
.|+++.|++|+-.+-+
T Consensus 35 ~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 35 NQGIEAAMDWLMEHED 50 (64)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 4789999999988753
No 23
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.78 E-value=51 Score=20.22 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=14.8
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHh
Q 028189 58 KRILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 58 ~~I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
...+.++. .||++.|++|+-.+
T Consensus 33 ~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 33 DRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34344443 69999999998653
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=32.38 E-value=47 Score=19.72 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHH--cCCHHHHHHHHHH
Q 028189 58 KRILHFAL--EGNALKAIELTEE 78 (212)
Q Consensus 58 ~~I~~~I~--~G~i~~Ai~~~~~ 78 (212)
...+.++. .|+++.|++|+-.
T Consensus 28 ~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 28 EANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Confidence 34344433 5889999999843
No 25
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.26 E-value=58 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHHh
Q 028189 66 EGNALKAIELTEEL 79 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~ 79 (212)
.||++.|++|+-.+
T Consensus 35 ~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 35 GGDVDAAVEKLRQS 48 (54)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC
Confidence 79999999999765
No 26
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=31.78 E-value=1e+02 Score=19.64 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHcCCHHHHHHHHHHhcHHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhcCccC--CchhHHHHHHHHHh
Q 028189 62 HFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG--KVQKYVEKLEDFMA 137 (212)
Q Consensus 62 ~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~--~~~~~~~~l~~~~~ 137 (212)
-....|++++|++++++.- .+...+....+.|= .-+...|+..+|+.+.++-+.-.. .+.....+++.++.
T Consensus 16 ~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg----~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELV-ETDPDYVGTYYHLG----KLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 4566899999999987542 11112223333221 122356889999988886553221 23344455554444
No 27
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=31.04 E-value=41 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=18.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 028189 57 RKRILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 57 r~~I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
+..++++++ .||++.|++|+-..
T Consensus 90 ~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 90 LKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567888886 68999999998654
No 28
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=30.73 E-value=98 Score=21.13 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhcHHHhccCccchhhhhHHHHHHHHh----ccChHHHHHHHHHhcCccCCchhHH
Q 028189 55 EMRKRILHFALEGN-ALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC----SRKCTEALEFAQTKLTPFGKVQKYV 129 (212)
Q Consensus 55 ~~r~~I~~~I~~G~-i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIEli~----~~~~~eAi~~ar~~l~~~~~~~~~~ 129 (212)
.....+++.|..|. +.+|++.....+|. .++.+|+ +|++.+++.-.-+.+ .+..
T Consensus 49 ~~l~~i~~~l~~G~sls~Al~~~~~~fp~---------------~~~~mi~~GE~sG~L~~~L~~la~~~------e~~~ 107 (123)
T 3c1q_A 49 TMLVAVRAKVTEGYTLSDSLGDYPHVFDE---------------LFRSMVAAGEKSGHLDSVLERLADYA------ENRQ 107 (123)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTCTTTSCH---------------HHHHHHHHHHHHTCHHHHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHhccccCCH---------------HHHHHHHHHHHhCcHHHHHHHHHHHH------HHHH
Confidence 34567788888776 67777543233332 2555554 578888876666543 2333
Q ss_pred HHHHHHHhHhccC
Q 028189 130 EKLEDFMALLAYE 142 (212)
Q Consensus 130 ~~l~~~~~lla~~ 142 (212)
+.-.++.+.++||
T Consensus 108 ~~~~~~~~al~YP 120 (123)
T 3c1q_A 108 KMRSKLQQASENL 120 (123)
T ss_dssp HHHHHHHTTC---
T ss_pred HHHHHHHHHHhcc
Confidence 3444566777776
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=30.50 E-value=2.1e+02 Score=22.95 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHH--HhhcHHHHHHHHHHhhC--CCCCCCCHHHH--HHHHHHHHHHHcCCHH------------HHH
Q 028189 12 AINDNDIHNIVLSYL--VHNCYKETVDSFISCTG--MKQPANCLEDM--EMRKRILHFALEGNAL------------KAI 73 (212)
Q Consensus 12 ~~~~~~l~~lI~~yL--~~~Gy~eta~~f~~es~--~~~~~~~~~~~--~~r~~I~~~I~~G~i~------------~Ai 73 (212)
.++.+.+..+|-+|. +..+..+.|..+.++.. +.....+.+.. -..-.++..++.+++. .++
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 467788888888887 77777777777766531 11111122221 2222334444433332 344
Q ss_pred HHHHHhcHHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhcCcc
Q 028189 74 ELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 122 (212)
Q Consensus 74 ~~~~~~~p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~ 122 (212)
+.+...... .+..+.+..+-..=+-....|+..+|+.+.++-+.-.
T Consensus 86 ~~i~~~~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 131 (378)
T 3q15_A 86 ETIETPQKK---LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131 (378)
T ss_dssp HHHHGGGHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTG
T ss_pred HHHhccCCC---CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 444322111 1122333333333344556789999998888765433
No 30
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.10 E-value=45 Score=21.65 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 028189 57 RKRILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 57 r~~I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
|..++.++. .||++.|++|+-.+
T Consensus 44 r~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 44 RDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 445444444 68999999998654
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.67 E-value=1.9e+02 Score=21.44 Aligned_cols=18 Identities=11% Similarity=-0.189 Sum_probs=9.8
Q ss_pred HHHHcCCHHHHHHHHHHh
Q 028189 62 HFALEGNALKAIELTEEL 79 (212)
Q Consensus 62 ~~I~~G~i~~Ai~~~~~~ 79 (212)
-....|+++.|++.+++.
T Consensus 46 ~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETY 63 (272)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 344456666666655543
No 32
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=27.31 E-value=71 Score=17.26 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.7
Q ss_pred cCCHHHHHHHH
Q 028189 66 EGNALKAIELT 76 (212)
Q Consensus 66 ~G~i~~Ai~~~ 76 (212)
.|+++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 78999999986
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=26.71 E-value=2.5e+02 Score=22.64 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=30.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhcHHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhc
Q 028189 60 ILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKL 119 (212)
Q Consensus 60 I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l 119 (212)
.......|++++|++++++... +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455667888888888765421 1111112112222222222345677777777776544
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=26.53 E-value=1.9e+02 Score=21.03 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHhcHHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhc
Q 028189 62 HFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKL 119 (212)
Q Consensus 62 ~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l 119 (212)
-.+..|++++|+.++++.. +.++.- ...+...-.-+...|+..+|+.+.++-+
T Consensus 182 ~~~~~~~~~~A~~~~~~al----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 182 ALAKLMSFPEAIADCNKAI----EKDPNF-VRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHH----HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH----HhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456778888877776542 111211 0111111112234577777777776544
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=25.91 E-value=2.2e+02 Score=21.76 Aligned_cols=28 Identities=4% Similarity=0.035 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 028189 158 RQHVADNLNRAILERPRYAAMERLIQQT 185 (212)
Q Consensus 158 r~~la~~vn~~il~~p~~s~Le~lv~~~ 185 (212)
.++-...+..++-..|..+.....+..+
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3444445555554466655544444443
No 36
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=25.65 E-value=25 Score=24.33 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhccChHHHHHHHHHhcCccCCchhHHHHHHHHHh
Q 028189 92 FDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (212)
Q Consensus 92 F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (212)
|.=+..+.+|||+.+.--.|+.|+++.+..+..-....+++..+.+
T Consensus 50 faPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~ 95 (100)
T 3izc_k 50 LSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIA 95 (100)
T ss_dssp HTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445568899999988888999999988877643445556665443
No 37
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=25.33 E-value=50 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 028189 55 EMRKRILHFALEGNALKAIELTEEL 79 (212)
Q Consensus 55 ~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (212)
...+.|-.+|+.|++++|++||++.
T Consensus 179 ~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 179 IFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 3456788999999999999999865
No 38
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.10 E-value=54 Score=20.22 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHHhcHH
Q 028189 66 EGNALKAIELTEELAQD 82 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~~p~ 82 (212)
.|+++.|++|+-.+.+.
T Consensus 34 ~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 34 NNSLERAVDWIFSHIDD 50 (63)
T ss_dssp TSCSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 57899999999887553
No 39
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.62 E-value=2.8e+02 Score=22.87 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcHHHhcc
Q 028189 56 MRKRILHFALEGNALKAIELTEELAQDLLEK 86 (212)
Q Consensus 56 ~r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~ 86 (212)
...+++..|.+|+..+|...++..+-+..+.
T Consensus 16 ~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~ 46 (312)
T 2wpv_A 16 TLQRFENKIKAGDYYEAHQTLRTIANRYVRS 46 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666555554443
No 40
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=24.31 E-value=1.3e+02 Score=18.49 Aligned_cols=59 Identities=19% Similarity=0.082 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHhccCcc-chhhhhHHHHHHHHhccChHHHHHHHHHhcCcc
Q 028189 59 RILHFALEGNALKAIELTEELAQDLLEKNKD-LHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 122 (212)
Q Consensus 59 ~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~-l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~ 122 (212)
.-...+..|+++.|++.+++.-. +...+.. ..+.+ =.-+...|+..+|+.+.++-+.-.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~l----g~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-TEPVGKDEAYYLM----GNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-HCSSTHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34566788999999999876421 1111112 22222 112335688999999888765433
No 41
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.19 E-value=54 Score=19.17 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=15.3
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHh
Q 028189 58 KRILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 58 ~~I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
.+.+.++. .|+++.|++|+-..
T Consensus 23 ~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 23 ERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 44555555 47899999998654
No 42
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.96 E-value=1e+02 Score=19.32 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=16.3
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 028189 57 RKRILHFAL--EGNALKAIELTEEL 79 (212)
Q Consensus 57 r~~I~~~I~--~G~i~~Ai~~~~~~ 79 (212)
+.+-+.++. .|+++.|.+|+=.|
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344455554 68999999999665
No 43
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.86 E-value=81 Score=17.56 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=11.0
Q ss_pred cCCHHHHHHHHHH
Q 028189 66 EGNALKAIELTEE 78 (212)
Q Consensus 66 ~G~i~~Ai~~~~~ 78 (212)
.|+++.|++|+-.
T Consensus 29 ~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 29 NWDLEAATNFLLD 41 (43)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHc
Confidence 7899999999854
No 44
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=23.43 E-value=28 Score=17.32 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhcCccC
Q 028189 108 CTEALEFAQTKLTPFG 123 (212)
Q Consensus 108 ~~eAi~~ar~~l~~~~ 123 (212)
+.+||.|.++++.-|.
T Consensus 2 isqaikylqnnikgfi 17 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFI 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEE
Confidence 4678999988776553
No 45
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.39 E-value=99 Score=19.14 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHHHhc
Q 028189 66 EGNALKAIELTEELA 80 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~~ 80 (212)
.|+++.|++|+-.+.
T Consensus 34 ~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 34 GNNLEAALNVLLTSN 48 (63)
T ss_dssp TSCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHCC
Confidence 678999999997764
No 46
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.28 E-value=2.1e+02 Score=24.35 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhCC--CCCCCCHHHH-HHHHHHHHHHHcCCHHHHHHHHHHhcHHHhcc-Cccchhh
Q 028189 18 IHNIVLSYLVHNCYKETVDSFISCTGM--KQPANCLEDM-EMRKRILHFALEGNALKAIELTEELAQDLLEK-NKDLHFD 93 (212)
Q Consensus 18 l~~lI~~yL~~~Gy~eta~~f~~es~~--~~~~~~~~~~-~~r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~-~~~l~F~ 93 (212)
...-.++|+.+.|-.+.|...-.+.-. ..+. ..+ -....|+-.+..|||..|...+++......+. ++...=.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 445567778888855444443332210 1111 112 23457888999999999999998875444333 2344445
Q ss_pred hhHHHHHHHHhccChHHHHHHHHHhcCccC
Q 028189 94 LLSLHFVELVCSRKCTEALEFAQTKLTPFG 123 (212)
Q Consensus 94 L~~q~fIEli~~~~~~eAi~~ar~~l~~~~ 123 (212)
+++..-+-.+..++..+|-.+-.+.+..|.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 555555555566777777666555555554
No 47
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=23.07 E-value=91 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 028189 53 DMEMRKRILHFALEGNALKAIELTEELA 80 (212)
Q Consensus 53 ~~~~r~~I~~~I~~G~i~~Ai~~~~~~~ 80 (212)
.+.+...|.++|..||.+.|...+..|.
T Consensus 182 ~~~eH~~I~~Ai~~~d~~~A~~~~~~Hl 209 (222)
T 3ihu_A 182 RLDDYRRIATAVLAGEPDAAEAAGAAHV 209 (222)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456667777777777777777776664
No 48
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.76 E-value=1.7e+02 Score=19.15 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHhcHHHhccCccchh
Q 028189 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEM-RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHF 92 (212)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~-r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F 92 (212)
+...+..+...|+...-|.++...|.+..... |. ....... ...-.-....|++++|++++..... +...+....+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-AT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-KDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-cc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCccCHHHHH
Confidence 34455555555555556666666676665543 21 1111111 1222345678999999999876431 1112222222
Q ss_pred hhhHHHHHHHHhccChHHHHHHHHHhcCccCCchhHHH
Q 028189 93 DLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVE 130 (212)
Q Consensus 93 ~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~~~~~~~ 130 (212)
. .-.-+...|+..+|+.+.++-+.-...++....
T Consensus 104 ~----~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 104 R----RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp H----HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred H----HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 2 122234568899999888876543332343333
No 49
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.53 E-value=95 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcH
Q 028189 51 LEDMEMRKRILHFALEGNALKAIELTEELAQ 81 (212)
Q Consensus 51 ~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p 81 (212)
.........|.++|..||.+.|...+..|..
T Consensus 172 ~~~~~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 202 (218)
T 3sxy_A 172 VVSNREHKELIERIISGDKEGAIEKLKEHLK 202 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566778889999999999999888887753
No 50
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.25 E-value=3.4e+02 Score=22.63 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred ChhhhhccCCCHHHHHHHHHHHHHhhcHHHHHHH---------------HHHhhCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 028189 4 DPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDS---------------FISCTGMKQPANCLEDMEMRKRILHFALEGN 68 (212)
Q Consensus 4 ~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~---------------f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~ 68 (212)
|++....-+.-..+|+.+|+.++..+|.+.-|+. +.-+-.....+...+.+-.| .|...+.-|+
T Consensus 124 WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR-aVL~yL~l~n 202 (336)
T 3lpz_A 124 WSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCAR-AVLPYLLVAN 202 (336)
T ss_dssp HHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH-HHHHHHHTTC
T ss_pred HHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHHHhCC
Q ss_pred HHHHHHHHHHhcHHHhccCccchhh--------------hhHHHHHHHH
Q 028189 69 ALKAIELTEELAQDLLEKNKDLHFD--------------LLSLHFVELV 103 (212)
Q Consensus 69 i~~Ai~~~~~~~p~ll~~~~~l~F~--------------L~~q~fIEli 103 (212)
+..|-+.+...-..+.+.++.|.+. .-...|+.++
T Consensus 203 ~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lL 251 (336)
T 3lpz_A 203 VRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISML 251 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHH
No 51
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.96 E-value=1e+02 Score=20.27 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=16.9
Q ss_pred HHHHHHHH-c--CCHHHHHHHHHHhcH
Q 028189 58 KRILHFAL-E--GNALKAIELTEELAQ 81 (212)
Q Consensus 58 ~~I~~~I~-~--G~i~~Ai~~~~~~~p 81 (212)
.+.++++. . |+++.|++|+-.|.+
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 44555544 3 589999999988753
No 52
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.91 E-value=55 Score=18.80 Aligned_cols=14 Identities=14% Similarity=-0.042 Sum_probs=11.3
Q ss_pred cCCHHHHHHHHHHh
Q 028189 66 EGNALKAIELTEEL 79 (212)
Q Consensus 66 ~G~i~~Ai~~~~~~ 79 (212)
.|+++.|++|+-.|
T Consensus 33 ~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 33 TSTMEQATEYLLTH 46 (47)
T ss_dssp SCSHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcC
Confidence 57999999998643
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.87 E-value=2.1e+02 Score=25.63 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 028189 15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEEL 79 (212)
Q Consensus 15 ~~~l~~lI~~yL~~~Gy~eta~~f~~es~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (212)
...+ .-++.||...||.+.|..+.++ ...++..++..|+++.|.+.++..
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~--------------~~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPD--------------QDQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCC--------------HHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCC--------------cchheehhhhcCCHHHHHHHHHhh
Confidence 4444 6677889999998888877532 234567789999999999988654
No 54
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.84 E-value=58 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 028189 56 MRKRILHFALEGNALKAIELTEEL 79 (212)
Q Consensus 56 ~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (212)
.-..|+++|+.||++.|+++|-+.
T Consensus 146 ~d~~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 146 IEQTISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 346799999999999999999654
No 55
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.47 E-value=1.1e+02 Score=18.92 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHH-cC--CHHHHHHHHHHhc
Q 028189 58 KRILHFAL-EG--NALKAIELTEELA 80 (212)
Q Consensus 58 ~~I~~~I~-~G--~i~~Ai~~~~~~~ 80 (212)
.+.++++. .| +++.|++|+-++-
T Consensus 24 ~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 24 HTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 44455554 33 7999999998875
No 56
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.72 E-value=3.9e+02 Score=22.64 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhc---HHHhccCccchhhhhHHHHHHHHhccChHHHHHHHHHhcCccCC-----chhHHH
Q 028189 59 RILHFALEGNALKAIELTEELA---QDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-----VQKYVE 130 (212)
Q Consensus 59 ~I~~~I~~G~i~~Ai~~~~~~~---p~ll~~~~~l~F~L~~q~fIEli~~~~~~eAi~~ar~~l~~~~~-----~~~~~~ 130 (212)
.+.+.-..|++++|++.+++.- -.++..++...-...-.-..-+...|+.++|+.+.++-+..+.. +|..-.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4555667899999999887542 11122221111111111122233568999999999977665431 233222
Q ss_pred HHHHHHhHhccCCCCCCchhhhCCHHHHHHHHHHHHHHH--hc---CCCchHHHHHHHHHHHHHHHHH
Q 028189 131 KLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAI--LE---RPRYAAMERLIQQTTAVRQCLS 193 (212)
Q Consensus 131 ~l~~~~~lla~~~~~~s~~~~l~~~~~r~~la~~vn~~i--l~---~p~~s~Le~lv~~~~~~~~~l~ 193 (212)
.+-.+-.+... ..++++-...+.+++ +. .|.+|..-.+...+..++..++
T Consensus 373 ~l~nLa~~~~~-------------~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 373 QVMKVGKLQLH-------------QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 22222222111 122344444445533 22 5666666666666666555443
No 57
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=20.65 E-value=1.8e+02 Score=18.78 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=33.6
Q ss_pred HHHHHcCCHHHHHHHHHHhcHHHhccCc-c-chhhhhHHHHHHHHhccChHHHHHHHHHhc
Q 028189 61 LHFALEGNALKAIELTEELAQDLLEKNK-D-LHFDLLSLHFVELVCSRKCTEALEFAQTKL 119 (212)
Q Consensus 61 ~~~I~~G~i~~Ai~~~~~~~p~ll~~~~-~-l~F~L~~q~fIEli~~~~~~eAi~~ar~~l 119 (212)
..+...|++..|+.|...-.-.....+. . -.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3556789999999999875433222110 0 011111111122346789999999888654
No 58
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=20.39 E-value=1.2e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 028189 55 EMRKRILHFALEGNALKAIELTEEL 79 (212)
Q Consensus 55 ~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (212)
.....|.++|..||.+.|.+.+..|
T Consensus 196 ~eH~~I~~Ai~~~D~~~A~~~m~~H 220 (239)
T 2hs5_A 196 TRNHEIYDALAAGNTEAAGQLLKTY 220 (239)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344555555555555555555444
No 59
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.19 E-value=1.2e+02 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 028189 53 DMEMRKRILHFALEGNALKAIELTEELA 80 (212)
Q Consensus 53 ~~~~r~~I~~~I~~G~i~~Ai~~~~~~~ 80 (212)
.......|.++|..||.+.|.+.+.+|.
T Consensus 192 ~~~eH~~I~~Ai~~~D~~~A~~~m~~Hl 219 (239)
T 2di3_A 192 LQKEHRAILAALRAGESTVAATLIKEHI 219 (239)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566777777777777776666653
No 60
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=20.12 E-value=1.1e+02 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcHHHhc
Q 028189 57 RKRILHFALEGNALKAIELTEELAQDLLE 85 (212)
Q Consensus 57 r~~I~~~I~~G~i~~Ai~~~~~~~p~ll~ 85 (212)
.+.++.+|..||.+.|.+.+..-.|.|.+
T Consensus 30 iKk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 30 IKKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35677889999999999998887776654
Done!