Query 028191
Match_columns 212
No_of_seqs 193 out of 608
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebm_A RWD domain-containing p 99.7 1E-17 3.5E-22 130.4 9.1 75 11-85 53-127 (128)
2 2ebk_A RWD domain-containing p 99.7 2.7E-17 9.4E-22 128.3 7.5 74 11-85 54-127 (128)
3 2yz0_A Serine/threonine-protei 99.7 9.4E-17 3.2E-21 126.6 9.3 68 12-79 61-128 (138)
4 2day_A Ring finger protein 25; 99.7 5.7E-17 1.9E-21 126.2 6.9 67 12-78 58-124 (128)
5 1ukx_A GCN2, GCN2 EIF2alpha ki 99.6 1.7E-16 5.8E-21 124.6 7.2 69 12-80 62-130 (137)
6 2dax_A Protein C21ORF6; RWD do 99.5 6.9E-14 2.3E-18 112.2 8.3 72 12-84 72-144 (152)
7 2daw_A RWD domain containing p 99.5 5.3E-14 1.8E-18 113.6 7.6 72 13-85 75-147 (154)
8 4a9a_C Translation machinery-a 98.4 1.7E-07 5.9E-12 74.9 4.3 44 103-154 34-77 (142)
9 3kpa_A Probable ubiquitin fold 89.7 0.18 6.3E-06 40.8 2.7 26 13-38 85-110 (168)
10 2a7l_A Hypothetical ubiquitin- 89.5 0.3 1E-05 38.0 3.9 25 13-37 71-95 (136)
11 2z6o_A UFM1-conjugating enzyme 88.2 0.25 8.7E-06 40.4 2.6 23 14-36 84-106 (172)
12 2fo3_A Ubiquitin-conjugating e 88.0 0.4 1.4E-05 36.5 3.6 25 13-37 53-77 (125)
13 2r0j_A Ubiquitin carrier prote 88.0 0.42 1.4E-05 37.4 3.7 25 13-37 48-72 (149)
14 1z2u_A Ubiquitin-conjugating e 88.0 0.41 1.4E-05 37.5 3.6 25 13-37 51-75 (150)
15 2h2y_A Ubiquitin-conjugating e 87.8 0.42 1.4E-05 37.0 3.6 25 13-37 67-91 (136)
16 2aak_A UBC1, ubiquitin conjuga 87.7 0.41 1.4E-05 37.6 3.5 25 13-37 51-75 (152)
17 2bep_A Ubiquitin-conjugating e 87.6 0.43 1.5E-05 37.7 3.6 25 13-37 58-82 (159)
18 2ayv_A Ubiquitin-conjugating e 87.6 0.44 1.5E-05 38.2 3.7 25 13-37 68-92 (166)
19 1fxt_A Ubiquitin-conjugating e 87.6 0.42 1.4E-05 37.4 3.5 25 13-37 49-73 (149)
20 2c2v_B Ubiquitin-conjugating e 87.6 0.45 1.5E-05 37.5 3.7 25 13-37 52-76 (154)
21 2ucz_A UBC7, ubiquitin conjuga 87.5 0.45 1.5E-05 37.8 3.7 25 13-37 52-76 (165)
22 3h8k_A Ubiquitin-conjugating e 87.4 0.46 1.6E-05 37.7 3.7 25 13-37 51-75 (164)
23 1zdn_A Ubiquitin-conjugating e 87.4 0.46 1.6E-05 37.6 3.7 25 13-37 60-84 (158)
24 1jat_A Ubiquitin-conjugating e 87.4 0.47 1.6E-05 37.3 3.7 25 13-37 52-76 (155)
25 2awf_A Ubiquitin-conjugating e 87.3 0.46 1.6E-05 38.2 3.7 25 13-37 65-89 (172)
26 2e2c_A Ubiquitin conjugating e 87.3 0.46 1.6E-05 37.4 3.6 25 13-37 56-80 (156)
27 1zuo_A Hypothetical protein LO 87.3 0.39 1.3E-05 39.3 3.3 24 14-37 90-113 (186)
28 2c4o_A Ubiquitin-conjugating e 87.0 0.5 1.7E-05 37.8 3.7 25 13-37 66-90 (165)
29 1ayz_A UBC2, ubiquitin-conjuga 86.8 0.51 1.7E-05 37.9 3.7 25 13-37 51-75 (169)
30 1wzv_A Ubiquitin-conjugating e 86.7 0.53 1.8E-05 37.0 3.6 25 13-37 51-75 (155)
31 1jat_B Ubiquitin-conjugating e 86.7 0.51 1.7E-05 36.5 3.5 25 13-37 57-81 (138)
32 2q0v_A Ubiquitin-conjugating e 86.6 0.54 1.8E-05 37.4 3.6 25 13-37 72-96 (156)
33 2onu_A Ubiquitin-conjugating e 86.4 0.56 1.9E-05 36.9 3.7 25 13-37 46-70 (152)
34 2y9m_A Ubiquitin-conjugating e 86.3 0.54 1.8E-05 37.8 3.5 24 13-36 65-88 (172)
35 1c4z_D UBCH7, ubiquitin conjug 86.3 0.53 1.8E-05 36.9 3.4 24 14-37 50-73 (154)
36 4gpr_A Ubiquitin-conjugating e 86.0 0.6 2.1E-05 36.6 3.6 25 13-37 51-75 (151)
37 1yh2_A HSPC150 protein similar 86.0 0.59 2E-05 37.4 3.6 25 13-37 51-75 (169)
38 2grr_A Ubiquitin-conjugating e 85.9 0.62 2.1E-05 36.9 3.6 25 13-37 59-83 (161)
39 2z5d_A Ubiquitin-conjugating e 85.8 0.58 2E-05 38.1 3.5 25 13-37 68-92 (179)
40 2gjd_A Ubiquitin-conjugating e 85.5 0.53 1.8E-05 37.2 3.1 25 13-37 56-80 (157)
41 1i7k_A Ubiquitin-conjugating e 85.5 0.65 2.2E-05 37.8 3.7 25 13-37 77-101 (179)
42 2pwq_A Ubiquitin conjugating e 85.4 0.63 2.2E-05 39.0 3.6 25 13-37 70-94 (216)
43 3bzh_A Ubiquitin-conjugating e 85.1 0.68 2.3E-05 38.1 3.7 25 13-37 95-119 (194)
44 2nvu_C NEDD8-conjugating enzym 85.1 0.65 2.2E-05 37.7 3.5 24 14-37 72-95 (180)
45 1yrv_A Ubiquitin-conjugating l 85.0 0.6 2E-05 37.5 3.2 25 13-37 70-94 (169)
46 1y8x_A Ubiquitin-conjugating e 85.0 0.67 2.3E-05 36.8 3.5 25 13-37 51-75 (160)
47 3rz3_A Ubiquitin-conjugating e 84.8 0.71 2.4E-05 37.4 3.6 25 13-37 55-79 (183)
48 2a4d_A Ubiquitin-conjugating e 84.8 0.74 2.5E-05 36.8 3.6 25 13-37 76-100 (160)
49 3k9o_A Ubiquitin-conjugating e 84.5 0.71 2.4E-05 37.9 3.5 25 13-37 55-79 (201)
50 3rcz_B SUMO-conjugating enzyme 84.5 0.79 2.7E-05 36.6 3.7 25 13-37 62-86 (163)
51 2f4z_A Tgtwinscan_2721 - E2 do 84.4 0.72 2.5E-05 37.9 3.5 25 13-37 92-116 (193)
52 3fn1_B NEDD8-conjugating enzym 84.3 0.63 2.2E-05 37.0 3.0 25 13-37 61-85 (167)
53 2f4w_A Ubiquitin-conjugating e 84.1 0.81 2.8E-05 37.3 3.7 25 13-37 61-85 (187)
54 4ds2_A Ubiquitin-conjugating e 83.8 0.86 3E-05 36.3 3.7 25 13-37 69-93 (167)
55 1yf9_A Ubiquitin carrier prote 83.8 0.82 2.8E-05 36.8 3.5 25 13-37 55-79 (171)
56 3o2u_A NEDD8-conjugating enzym 83.5 0.83 2.8E-05 37.4 3.5 25 13-37 80-104 (190)
57 1tte_A Ubiquitin-conjugating e 82.7 0.68 2.3E-05 38.8 2.7 24 14-37 51-74 (215)
58 3e46_A Ubiquitin-conjugating e 81.1 1.1 3.8E-05 38.4 3.5 25 13-37 107-131 (253)
59 2hlw_A Ubiquitin-conjugating e 79.5 0.93 3.2E-05 36.5 2.4 24 14-37 87-110 (170)
60 3ceg_A Baculoviral IAP repeat- 77.8 1.6 5.4E-05 38.9 3.6 25 13-37 127-151 (323)
61 1otf_A 4-oxalocrotonate tautom 74.6 3.3 0.00011 26.4 3.6 34 30-63 1-34 (62)
62 2opa_A Probable tautomerase YW 74.2 3.5 0.00012 26.3 3.7 34 30-63 1-34 (61)
63 4ddg_A Ubiquitin-conjugating e 73.9 2.7 9.3E-05 38.0 4.1 25 13-37 50-74 (399)
64 3m20_A 4-oxalocrotonate tautom 73.5 4.6 0.00016 26.3 4.2 33 30-63 1-33 (62)
65 2x4k_A 4-oxalocrotonate tautom 73.4 3.7 0.00013 26.0 3.7 35 29-63 3-37 (63)
66 3ry0_A Putative tautomerase; o 72.7 3.8 0.00013 26.8 3.7 34 30-63 1-34 (65)
67 3m21_A Probable tautomerase HP 69.8 5.4 0.00018 26.3 3.9 34 30-63 1-37 (67)
68 3r3q_A Suppressor protein STP2 69.8 3.6 0.00012 33.0 3.5 23 14-36 82-104 (162)
69 3mb2_A 4-oxalocrotonate tautom 69.5 4.2 0.00014 27.3 3.3 35 29-63 1-35 (72)
70 3abf_A 4-oxalocrotonate tautom 69.0 5.2 0.00018 25.7 3.6 34 30-63 2-35 (64)
71 3qc5_X Platelet binding protei 66.4 12 0.00039 33.8 6.3 42 12-55 269-310 (360)
72 3obq_A Tumor susceptibility ge 66.1 5 0.00017 31.6 3.6 23 14-36 70-92 (146)
73 3ej9_A Alpha-subunit of trans- 62.7 7.7 0.00026 26.5 3.7 35 29-63 1-35 (76)
74 3zqs_A E3 ubiquitin-protein li 59.3 14 0.00048 30.3 5.2 24 14-37 39-62 (186)
75 4fp9_B Mterf domain-containing 57.2 5.9 0.0002 35.1 2.8 19 106-124 261-279 (335)
76 1gyx_A YDCE, B1461, hypothetic 51.5 19 0.00066 24.2 4.1 35 30-64 1-36 (76)
77 3mlc_A FG41 malonate semialdeh 50.3 23 0.0008 26.8 4.9 44 19-63 50-98 (136)
78 3ej9_B Beta-subunit of trans-3 44.9 24 0.00081 24.6 3.7 34 30-63 1-34 (70)
79 3mlc_A FG41 malonate semialdeh 42.4 19 0.00065 27.4 3.2 34 30-63 1-34 (136)
80 2aal_A Malonate semialdehyde d 36.8 32 0.0011 25.4 3.7 35 29-63 1-35 (131)
81 2wkb_A Macrophage migration in 31.0 40 0.0014 24.7 3.4 38 26-63 54-91 (125)
82 1mww_A Hypothetical protein HI 30.4 1.5E+02 0.0053 21.4 6.6 35 29-63 59-93 (128)
83 1hfo_A Migration inhibitory fa 29.7 64 0.0022 22.9 4.2 38 26-63 53-90 (113)
84 2wkb_A Macrophage migration in 29.1 63 0.0022 23.6 4.2 38 30-67 1-38 (125)
85 1uiz_A MIF, macrophage migrati 27.7 74 0.0025 22.6 4.3 38 26-63 54-91 (115)
86 2xcz_A Possible ATLS1-like lig 26.5 75 0.0026 22.6 4.1 37 27-63 55-91 (115)
87 3b64_A Macrophage migration in 25.2 84 0.0029 22.3 4.2 38 26-63 54-91 (112)
88 2os5_A Acemif; macrophage migr 24.5 92 0.0032 22.4 4.3 36 28-63 56-91 (119)
89 2aal_A Malonate semialdehyde d 24.4 1.3E+02 0.0043 22.0 5.1 33 30-63 67-99 (131)
90 2xcz_A Possible ATLS1-like lig 24.4 68 0.0023 22.8 3.5 36 30-66 2-37 (115)
91 3ux2_A MIP18 family protein FA 24.1 35 0.0012 26.3 1.9 14 16-29 51-64 (130)
92 3c6v_A Probable tautomerase/de 23.7 88 0.003 24.4 4.3 34 29-63 22-56 (161)
93 3b64_A Macrophage migration in 23.2 1E+02 0.0035 21.8 4.3 35 30-65 1-36 (112)
94 3fcs_B Integrin beta-3; beta p 21.0 48 0.0016 32.1 2.6 47 3-51 88-134 (690)
95 3t5s_A Gilaa.00834.A, macropha 20.9 1.3E+02 0.0043 22.6 4.5 40 26-65 19-58 (135)
No 1
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=130.38 Aligned_cols=75 Identities=40% Similarity=0.548 Sum_probs=70.9
Q ss_pred CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc
Q 028191 11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG 85 (212)
Q Consensus 11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~~~ 85 (212)
.++.+.|+|++|++||+++|.|.|.+.+||+...+..|.+.|...+++++|+||||+||+|||++|.++++++++
T Consensus 53 ~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~ 127 (128)
T 2ebm_A 53 ETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT 127 (128)
T ss_dssp CCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred CceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999988899999999999999999999999999999999999999999998764
No 2
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=128.27 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=69.3
Q ss_pred CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc
Q 028191 11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG 85 (212)
Q Consensus 11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~~~ 85 (212)
.++++.|+|++|++||+++|.|.|. .+||++..+..|.+.|.+.+++++||+|||+||+|||++|.++++++++
T Consensus 54 ~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~p~~ 127 (128)
T 2ebk_A 54 ADIPLELVFHLPVNYPSCLPGISIN-SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 127 (128)
T ss_dssp CCCEEEEEEEECSSTTSSCCCCCCC-CSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCCCCC
T ss_pred CCeEEEEEEECCCCCCCCCCeEEEE-hhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCcCC
Confidence 3578999999999999999999998 5899999999999999999999999999999999999999999988753
No 3
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.4e-17 Score=126.57 Aligned_cols=68 Identities=22% Similarity=0.428 Sum_probs=65.9
Q ss_pred ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028191 12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 79 (212)
Q Consensus 12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~ 79 (212)
+++|.|+|++|++||+++|.|.|.+.+||+...+..|++.|...+++++|+||||+||+|||+||.++
T Consensus 61 ~~~~~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 61 ESSITLHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp CCEEEEEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988999999999999999999999999999999999999999988
No 4
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.67 E-value=5.7e-17 Score=126.17 Aligned_cols=67 Identities=30% Similarity=0.544 Sum_probs=64.3
Q ss_pred ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191 12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 78 (212)
Q Consensus 12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e 78 (212)
++.+.|+|++|++||+++|.|.+.+.+||++..+..|++.|.+.+++++||+|||+||+++|+||.+
T Consensus 58 ~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 124 (128)
T 2day_A 58 YVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSG 124 (128)
T ss_dssp CCEEEEEEEECSSTTSSCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCC
T ss_pred ceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 4789999999999999999999999889999999999999999999999999999999999999965
No 5
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.65 E-value=1.7e-16 Score=124.64 Aligned_cols=69 Identities=29% Similarity=0.514 Sum_probs=65.5
Q ss_pred ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 028191 12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY 80 (212)
Q Consensus 12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~ 80 (212)
+++|.|+|++|++||+++|.|.+.+.+||+...+..|++.|.+.+++++||+|||+||+|||+||.++.
T Consensus 62 ~~~~~L~v~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~ 130 (137)
T 1ukx_A 62 YVQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130 (137)
T ss_dssp SCEEEEEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEECCCCCCCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence 578999999999999999999998788999999999999999999999999999999999999998864
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.48 E-value=6.9e-14 Score=112.25 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=62.1
Q ss_pred ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhhccc
Q 028191 12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMIYTLVTSAKEWLSERYSQDA 84 (212)
Q Consensus 12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~ae-enlGm~MIFtLve~lqE~L~e~~~~~~ 84 (212)
.+.|.|+|++|++||+++|.|+|.+. .+...+...|.+.|...++ +++||+|||+||+|||+++.+++.+..
T Consensus 72 ~~~l~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~~ 144 (152)
T 2dax_A 72 MAMFSLACILPFKYPAVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRDT 144 (152)
T ss_dssp EEEEEEEEEECSSTTSSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCCC
T ss_pred CceEEEEEECCCCCCCCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhccc
Confidence 35899999999999999999999975 4777778888887776654 699999999999999999999987653
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.48 E-value=5.3e-14 Score=113.64 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=65.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhhcccc
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQDAG 85 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeen-lGm~MIFtLve~lqE~L~e~~~~~~~ 85 (212)
.++.|+|++|++||+++|.|.|.+. +++......|.+.|...++++ +||+|||+||+|||+++.+++.+.+.
T Consensus 75 ~~i~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~~~~ 147 (154)
T 2daw_A 75 VKIDLQVTMPHSYPYLALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRKL 147 (154)
T ss_dssp EEEEEEEEECSSTTSSCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCCCC
T ss_pred ceEEEEEEcCCCCCCCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCcCC
Confidence 3799999999999999999999985 899999999999998888776 79999999999999999999887643
No 8
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.7e-07 Score=74.89 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHhhcCc
Q 028191 103 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGR 154 (212)
Q Consensus 103 ~GTpVT~EsF~~Wk~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqlFe~~~ 154 (212)
+.||||.|+|++||++...++....++. .+++++|||++|..+.
T Consensus 34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~ 77 (142)
T 4a9a_C 34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMS 77 (142)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhcc
Confidence 5699999999999999888775443221 1235789999999865
No 9
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=89.69 E-value=0.18 Score=40.75 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.8
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecCC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSLR 38 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~~ 38 (212)
..+.|.|.+|.+||.+||.|.+....
T Consensus 85 yeFkLefdiP~tYP~tPPeI~Fp~ld 110 (168)
T 3kpa_A 85 YEFEMNFDIPVTYPQAPPEIALPELE 110 (168)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGGGT
T ss_pred eEEEEEEeCCccCCCCCCEeeccccc
Confidence 36889999999999999999997753
No 10
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=89.54 E-value=0.3 Score=37.98 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.9
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 71 G~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 71 EKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp CEEEEEEEECTTTTTSCCEEEEESS
T ss_pred EEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3688999999999999999998753
No 11
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=88.20 E-value=0.25 Score=40.39 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEEeCCCCCCCCCceEEec
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKS 36 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~ 36 (212)
.+.|.|.+|++||.+||.+.+..
T Consensus 84 ~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 84 EFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp EEEEEEECCTTTTTSCCCCBCGG
T ss_pred EEEEEEECCCCCCCCCCeeeeCC
Confidence 68899999999999999999954
No 12
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=88.04 E-value=0.4 Score=36.46 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.+.|.+|++||..||.+.+...
T Consensus 53 g~f~~~i~fp~~YP~~PP~v~f~t~ 77 (125)
T 2fo3_A 53 EVYKLKIIFPDDYPLKPPIVYFLQK 77 (125)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECSS
T ss_pred CEEEEEEEcCCCCCCCCCEEEEeCC
Confidence 4688999999999999999998763
No 13
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=88.00 E-value=0.42 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 48 g~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 48 GTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECSC
T ss_pred CEEEEEEeCCcccCCCCCeeEeccC
Confidence 4688999999999999999998764
No 14
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=87.97 E-value=0.41 Score=37.48 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 51 GVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCcEEEEecC
Confidence 3688999999999999999998764
No 15
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=87.80 E-value=0.42 Score=37.00 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 67 g~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 67 EVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECSS
T ss_pred CEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 4688999999999999999998763
No 16
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=87.74 E-value=0.41 Score=37.55 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 51 GTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCCEEEEecC
Confidence 4688999999999999999998764
No 17
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=87.62 E-value=0.43 Score=37.72 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 58 g~f~~~i~fp~~YP~~PP~v~f~t~ 82 (159)
T 2bep_A 58 GRYQLEIKIPETYPFNPPKVRFITK 82 (159)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEeCCCcCCCCCCEEEeeCC
Confidence 3688999999999999999998864
No 18
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=87.59 E-value=0.44 Score=38.19 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 68 G~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 68 GVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred CEEEEEEeCCCcCCCCCceeeeccC
Confidence 3688999999999999999998764
No 19
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=87.59 E-value=0.42 Score=37.36 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 49 g~f~~~i~fp~~YP~~PP~v~f~t~ 73 (149)
T 1fxt_A 49 GKFVVDIEVPMEYPFKPPKMQFDTK 73 (149)
T ss_dssp SEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3688999999999999999998763
No 20
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=87.56 E-value=0.45 Score=37.48 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 52 g~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 52 GTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred CeEEEEEEcCCCCCCCCCEEEeecC
Confidence 3688999999999999999998864
No 21
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=87.45 E-value=0.45 Score=37.80 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 52 g~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 52 GVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cEEEEEEECCccCCCCCCEEEEeCC
Confidence 4688999999999999999998864
No 22
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=87.41 E-value=0.46 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 51 GVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred CEEEEEEECCCCCCCCCCEEEEcCC
Confidence 4688999999999999999998864
No 23
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=87.41 E-value=0.46 Score=37.59 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 60 g~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 60 GLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cEEEEEEEcCCCCCCCCCEEEeccC
Confidence 3688999999999999999999865
No 24
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=87.38 E-value=0.47 Score=37.34 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 52 g~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 52 GIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp EEEEEEEECCTTTTTSCCEEEECSC
T ss_pred cEEEEEEEcCCCCCCCCCcceeecc
Confidence 4788999999999999999998764
No 25
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=87.35 E-value=0.46 Score=38.24 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 65 G~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 65 GVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred cEEEEEEECCcccCCCCCcccccCC
Confidence 3688999999999999999998864
No 26
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=87.35 E-value=0.46 Score=37.44 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 56 g~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 56 LKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4688999999999999999998764
No 27
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=87.32 E-value=0.39 Score=39.29 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.+.|.|.+|++||..||.+.+...
T Consensus 90 ~f~l~i~fp~~YP~~PP~V~f~tp 113 (186)
T 1zuo_A 90 YILLNFSFKDNFPFDPPFVRVVLP 113 (186)
T ss_dssp SEEEEEECCTTTTSSCCEEEEEES
T ss_pred EEEEEEECCCCCCCCCCeEEEeCC
Confidence 588999999999999999998764
No 28
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=87.01 E-value=0.5 Score=37.78 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 66 g~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 66 GVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred ceEEEEEECCCcCCCCCCEEEEecC
Confidence 3688999999999999999998764
No 29
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=86.81 E-value=0.51 Score=37.90 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 51 G~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 51 GTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECcccCCCCCCccccccC
Confidence 3688999999999999999998764
No 30
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=86.73 E-value=0.53 Score=37.02 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 51 KAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp EEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCCcceeeCC
Confidence 4688999999999999999998864
No 31
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=86.71 E-value=0.51 Score=36.49 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 57 g~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 57 RIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred eEEEEEEECCCCCCCCCCceEEEcc
Confidence 4688999999999999999998864
No 32
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=86.58 E-value=0.54 Score=37.37 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 72 G~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 72 RIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cEEEEEEECCCcCCCCCCeEEEEcc
Confidence 3688999999999999999998864
No 33
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=86.45 E-value=0.56 Score=36.93 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.9
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 46 g~f~~~i~fp~~YP~~pP~v~f~t~ 70 (152)
T 2onu_A 46 GIWKVHVTLPDDYPFASPSIGFMNK 70 (152)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred eEEEEEEcCcccCCCCCCeEEEecC
Confidence 3688999999999999999998763
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=86.29 E-value=0.54 Score=37.79 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEEEeCCCCCCCCCceEEec
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKS 36 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~ 36 (212)
..+.|.|.+|++||..||.+.+..
T Consensus 65 g~f~~~i~fp~~YP~~PP~v~f~t 88 (172)
T 2y9m_A 65 HQFRILIEVPSSYPMNPPKISFMQ 88 (172)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECT
T ss_pred CEEEEEEECCCcCCCCCCEEEEee
Confidence 468899999999999999999987
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=86.25 E-value=0.53 Score=36.95 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.+.|.|.+|++||..||.+.+...
T Consensus 50 ~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 50 AFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp CEEEEEECCTTTTTSCCEEEESSC
T ss_pred eEEEEEEeCCCCCCCCCEEEEeCC
Confidence 588899999999999999998764
No 36
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=86.03 E-value=0.6 Score=36.56 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 51 GLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCcceeEEecC
Confidence 4688999999999999999998764
No 37
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=85.99 E-value=0.59 Score=37.38 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 51 GVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEEeCCCCCCCCcEEEeecC
Confidence 4688999999999999999998864
No 38
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=85.85 E-value=0.62 Score=36.95 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 59 g~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 59 GLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEEcCcccCCCCCEEEEecC
Confidence 3688899999999999999998864
No 39
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=85.82 E-value=0.58 Score=38.13 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.1
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 68 G~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 68 GVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEeeCCCCCCCCCceEEEecC
Confidence 3688999999999999999999864
No 40
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=85.52 E-value=0.53 Score=37.16 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 56 g~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 56 GVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp BEEEEEEECCTTTTTSCCEEECCTT
T ss_pred eEEEEEEEcCCCCCCCCCeeeccCC
Confidence 4688999999999999999998764
No 41
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=85.50 E-value=0.65 Score=37.76 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 77 G~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 77 LRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCcCCCCCceEEEecC
Confidence 4688999999999999999998864
No 42
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=85.36 E-value=0.63 Score=38.99 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 70 G~f~l~i~fP~~YP~~PP~V~F~T~ 94 (216)
T 2pwq_A 70 GHFTLAITIPNDYPYNPPKIKFVTK 94 (216)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred eEEEEEEECCCcCCCCCCcccccCC
Confidence 3688999999999999999998864
No 43
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=85.10 E-value=0.68 Score=38.09 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 95 G~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 95 GVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCcCCCCCccccccCC
Confidence 4688999999999999999998764
No 44
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=85.08 E-value=0.65 Score=37.71 Aligned_cols=24 Identities=21% Similarity=0.664 Sum_probs=21.5
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.+.|.|.+|++||..||.+.+...
T Consensus 72 ~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 72 KFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp CEEEEEECCTTTTTSCCEEEECSC
T ss_pred EEEEEEeCCCcCCCCCCcCceecc
Confidence 578899999999999999998864
No 45
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=85.04 E-value=0.6 Score=37.55 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 70 G~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 70 LVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp CEEEEEEECCTTBTTBCCEEEESSC
T ss_pred eEEEEEEECCccCCCCCCcceecCC
Confidence 3688999999999999999999864
No 46
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=85.04 E-value=0.67 Score=36.80 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=21.9
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 51 g~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 51 GKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp BCEEEEEECCTTTTTSCCEEEECSC
T ss_pred CEEEEEEeCCCcCCCCCCEEEEecC
Confidence 3588899999999999999998864
No 47
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=84.85 E-value=0.71 Score=37.42 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.9
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 55 g~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 55 GYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CeEEEEEECCCCCCCCCCeeEecCC
Confidence 3588899999999999999998864
No 48
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=84.79 E-value=0.74 Score=36.82 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 76 G~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 76 RIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred eEEEEEEECCCcCCCCCcEEEEecC
Confidence 3688999999999999999998864
No 49
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=84.50 E-value=0.71 Score=37.90 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 55 g~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 55 GRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCcCCCCCCccccccC
Confidence 3688999999999999999998863
No 50
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=84.46 E-value=0.79 Score=36.57 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 62 g~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 62 GLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4688999999999999999998864
No 51
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=84.43 E-value=0.72 Score=37.95 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 92 G~f~l~i~fp~~YP~~PP~V~F~T~ 116 (193)
T 2f4z_A 92 GHFTLDIVIPPDYPYNPPKMKFVTK 116 (193)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCcCCCCCCeEEEecC
Confidence 3688999999999999999998864
No 52
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=84.30 E-value=0.63 Score=37.00 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.7
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 61 g~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 61 GKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp CCEEEEEECCTTBTTBCCEEEECSC
T ss_pred CEEEEEEECCCCCCCCCCeeEecCC
Confidence 3578899999999999999998764
No 53
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=84.15 E-value=0.81 Score=37.35 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 61 G~f~l~i~fP~~YP~~PP~v~f~T~ 85 (187)
T 2f4w_A 61 GYYHGKLIFPREFPFKPPSIYMITP 85 (187)
T ss_dssp CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred CEEEEEEEcCCCCCCCCCcccccCC
Confidence 4688999999999999999998864
No 54
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=83.85 E-value=0.86 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 69 g~f~~~i~fp~~YP~~pP~v~f~t~ 93 (167)
T 4ds2_A 69 NTYQLSVLFSDDYPHEPPTVRFVTP 93 (167)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4588999999999999999998864
No 55
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=83.78 E-value=0.82 Score=36.80 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 55 g~f~~~i~fp~~YP~~PP~v~F~t~ 79 (171)
T 1yf9_A 55 GTWMLHVQLPSDYPFKSPSIGFCNR 79 (171)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred ceEEEEEEcCCCCCCCCCeEEeecC
Confidence 3688999999999999999998763
No 56
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=83.46 E-value=0.83 Score=37.37 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 80 g~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 80 GSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CCEEEEEECCTTTTTSCCEEEECSC
T ss_pred CEEEEEEECCCCCCCCCceeEEecC
Confidence 3578899999999999999998764
No 57
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=82.65 E-value=0.68 Score=38.77 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.+.|.|.+|++||..||.+.+...
T Consensus 51 ~f~l~i~fP~~YP~~PP~V~F~T~ 74 (215)
T 1tte_A 51 KFVVDIEVPMEYPFKPPKMQFDTK 74 (215)
T ss_dssp CCEEEEECCSCSSSCCCEEEETTT
T ss_pred EEEEEEeCCccCCCCCCcccccCC
Confidence 578899999999999999998764
No 58
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=81.07 E-value=1.1 Score=38.44 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 107 G~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 107 GRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred CEEEEEEECCCCCCCCCCeeeecCC
Confidence 3688999999999999999998763
No 59
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=79.49 E-value=0.93 Score=36.52 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.+.|.|.+|++||..||.+.+...
T Consensus 87 ~f~l~i~fp~~YP~~PP~v~F~T~ 110 (170)
T 2hlw_A 87 IYSLKIECGPKYPEAPPFVRFVTK 110 (170)
T ss_dssp CBCEEEECCSSCTTSCCEEEECBC
T ss_pred EEEEEEECCCCCCCCCCeeEEecc
Confidence 578889999999999999998764
No 60
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=77.82 E-value=1.6 Score=38.87 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.|.+...
T Consensus 127 G~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 127 GCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECCS
T ss_pred CEEEEEEeCCCCCCCCCCeEEEecc
Confidence 3688999999999999999998764
No 61
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=74.64 E-value=3.3 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=30.2
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|....|.+..+...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p 34 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAP 34 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888887788899999999999999998888887
No 62
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=74.19 E-value=3.5 Score=26.27 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.1
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|....|.+..+...|.+.|.+...+.+|.|
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~ 34 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGAS 34 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888887788899999999999999998888877
No 63
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=73.93 E-value=2.7 Score=37.96 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEEEEEeCCCCCCCCCceEEecC
Q 028191 13 VELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 13 ~~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
..+.|.|.+|++||..||.+.+...
T Consensus 50 g~f~~~i~fp~~YP~~pP~v~f~t~ 74 (399)
T 4ddg_A 50 GVFFLTIHFPTDYPFKPPKVAFTTR 74 (399)
T ss_dssp CEEEEEEECCSSTTTSCCEEEESSC
T ss_pred CEEEEEEECCcccCCCCcEEEeecc
Confidence 4688999999999999999998764
No 64
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=73.54 E-value=4.6 Score=26.32 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=30.2
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|.. .|.+..+...|.+.|.....+.+|.|
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7899988 89999999999999999999999887
No 65
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=73.43 E-value=3.7 Score=25.97 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.|.|....|.+..+...|.+.|.+...+.+|.|
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 58999988888999999999999999998888887
No 66
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=72.72 E-value=3.8 Score=26.84 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=30.5
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|.-..|.+..++..|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p 34 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTP 34 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888887789999999999999999999988887
No 67
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=69.85 E-value=5.4 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.4
Q ss_pred CceEEecCC---CCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLR---GIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~---gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|.-.. |.+..+...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p 37 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKN 37 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 788888887 8999999999999999999888887
No 68
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=69.76 E-value=3.6 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEEEeCCCCCCCCCceEEec
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKS 36 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~ 36 (212)
.+-|.+.+|.+||-.||.+.+..
T Consensus 82 n~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 82 SIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp EEEEEEECCTTTTTSCCEEEECG
T ss_pred cccEEEEeCcccCCCCCEEEEEC
Confidence 47889999999999999999864
No 69
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=69.49 E-value=4.2 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=31.3
Q ss_pred CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.|.|....|.+..++..|.+.|.+...+.+|.|
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p 35 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVP 35 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 38889887789999999999999999999999888
No 70
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=69.03 E-value=5.2 Score=25.67 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=30.0
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.|.|....+.+..+...|.+.|-+...+.+|.|
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7888887788888999999999999988888887
No 71
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=66.43 E-value=12 Score=33.77 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=35.7
Q ss_pred ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHH
Q 028191 12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQE 55 (212)
Q Consensus 12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~ 55 (212)
+..+.|.+.|+|.+|. +.+.+..+.+|++.+..+++..++..
T Consensus 269 ~G~fklviKy~P~vP~--~KV~V~DPnnLTd~EKekVkeaVKkA 310 (360)
T 3qc5_X 269 NGQFKLIIRFRIKTPE--NTVFVNNPNQLTEVEKNLVREAVKKS 310 (360)
T ss_dssp TTEEEEEEECCCCCCS--SCEEESCTTSCCHHHHHHHHHHHHHH
T ss_pred cccEEEEEecCCCCCC--cceEecCcccCCHHHHHHHHHHHHHh
Confidence 3467888899999995 66788889999999999999999863
No 72
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=66.15 E-value=5 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.9
Q ss_pred EEEEEEEeCCCCCCCCCceEEec
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKS 36 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~ 36 (212)
.+-|.+.+|.+||-.||.+.+..
T Consensus 70 ~iPi~Iwlp~~YP~~pP~vfv~p 92 (146)
T 3obq_A 70 NIPICLWLLDTYPYNPPICFVKP 92 (146)
T ss_dssp EEEEEEECCTTTTTSCCEEEECC
T ss_pred cceEEEEeCccCCCCCCEEEEeC
Confidence 45578999999999999998865
No 73
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=62.67 E-value=7.7 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.|.|....|.+..+...|.+.|.+...+.+|.|
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p 35 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEP 35 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 38899988889999999999999999999888888
No 74
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=59.33 E-value=14 Score=30.28 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEEEEeCCCCCCCCCceEEecC
Q 028191 14 ELALIFSHTEKYPDEPPLLNVKSL 37 (212)
Q Consensus 14 ~l~L~f~~p~~YP~e~P~i~i~~~ 37 (212)
.-.|+|.++.+||.++|.+...-+
T Consensus 39 ~H~l~v~l~~~yp~~~P~~~~DlP 62 (186)
T 3zqs_A 39 EHLITLKLKAKYPAESPDYFVDFP 62 (186)
T ss_dssp EEEEEEECCTTTTTSCCEEECCCS
T ss_pred eEEEEEEECCCCCCCCCeeEEcCC
Confidence 345678999999999998887654
No 75
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=57.24 E-value=5.9 Score=35.07 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 028191 106 PVTVETFLAWRERFEAELA 124 (212)
Q Consensus 106 pVT~EsF~~Wk~kf~~E~~ 124 (212)
.+|.+.|..|++-+.+|..
T Consensus 261 ~~s~eey~~F~k~~~~e~~ 279 (335)
T 4fp9_B 261 CTSVEEFQVFKKLLAREEE 279 (335)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhhh
Confidence 5789999999988888763
No 76
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=51.48 E-value=19 Score=24.20 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=29.4
Q ss_pred CceEEecCCCC-CHHhHHHHHHHHHHHHHHhcCChH
Q 028191 30 PLLNVKSLRGI-QAGDLKILKEKLEQEASENLGMAM 64 (212)
Q Consensus 30 P~i~i~~~~gL-~~~~l~~L~~~L~~~aeenlGm~M 64 (212)
|.|.|.-..|- +..+...|.+.|.+...+.+|.|.
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~ 36 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKD 36 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCC
Confidence 77888766674 999999999999999888888873
No 77
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=50.35 E-value=23 Score=26.84 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=34.5
Q ss_pred EEeCCCC-----CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 19 FSHTEKY-----PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 19 f~~p~~Y-----P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.++++| .+..+.|.|....|-+.+++..|.+.|.... +.+|.+
T Consensus 50 ~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~~ 98 (136)
T 3mlc_A 50 IIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGVA 98 (136)
T ss_dssp EEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTCC
T ss_pred ccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCCC
Confidence 3445556 3345788888778889999999999999999 999877
No 78
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=44.86 E-value=24 Score=24.62 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.9
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.+.+.-.+|.+.++...|...+.+.+-+.||.|
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap 34 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSD 34 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6778777899999999999999999999999988
No 79
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=42.36 E-value=19 Score=27.35 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=31.0
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
|.+.|.-.+|.+..++..|.+.|.+..-+.+|.|
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP 34 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIP 34 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888888889999999999999999999999988
No 80
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=36.83 E-value=32 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.+.|....+.+..+...|.+.|.+...+.+|.|
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p 35 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVP 35 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 38888887788888899999999999888888888
No 81
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=31.04 E-value=40 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 26 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 26 P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
++-.|.+.|....|.+..+...+.+.|.+...+.+|.|
T Consensus 54 ~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~ 91 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVK 91 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 45568889988888988899999999999888888887
No 82
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=30.38 E-value=1.5e+02 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=30.5
Q ss_pred CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.|.|....|.+..+...|.+.|-+...+.+|.|
T Consensus 59 ~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~ 93 (128)
T 1mww_A 59 YTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIR 93 (128)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 47788887789999999999999999988888877
No 83
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=29.70 E-value=64 Score=22.86 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 26 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 26 P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
++-.+.++|....|++..+...+.+.|.+...+.+|.|
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 90 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIP 90 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 45557888888888999999999999999999888876
No 84
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=29.13 E-value=63 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.1
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHH
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYT 67 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFt 67 (212)
|.|.|....++++.+...|.+.|.+...+.+|.|.=|.
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~~ 38 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYI 38 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHHE
Confidence 77888766778888899999999999989999985433
No 85
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=27.72 E-value=74 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.6
Q ss_pred CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 26 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 26 P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
++-.+.+.|....|++..+...+.+.|.+...+.+|.|
T Consensus 54 ~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (115)
T 1uiz_A 54 TDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIP 91 (115)
T ss_dssp CSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34457778887788999999999999999988888876
No 86
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=26.47 E-value=75 Score=22.63 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 27 DEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 27 ~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
+..+.+.|....|.+..+...+.+.|.+...+.+|.|
T Consensus 55 ~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~ 91 (115)
T 2xcz_A 55 EPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIP 91 (115)
T ss_dssp SSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 4446777877778999999999999999888888876
No 87
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=25.20 E-value=84 Score=22.27 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 26 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 26 P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
++-.+.++|....|.+..+...+.+.|.+...+.+|.|
T Consensus 54 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (112)
T 3b64_A 54 TDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIV 91 (112)
T ss_dssp CSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34447778887788999999999999999999888876
No 88
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=24.51 E-value=92 Score=22.35 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 28 EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 28 e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
-.+.++|....|.+..+...+.+.|.+...+.+|.|
T Consensus 56 ~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (119)
T 2os5_A 56 PVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLP 91 (119)
T ss_dssp SCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 346677887788999999999999999888888876
No 89
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=24.43 E-value=1.3e+02 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=27.9
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
+.|.|. ..|.+..+...|.+.|.+...+.+|.+
T Consensus 67 ~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~~ 99 (131)
T 2aal_A 67 VLLTVI-SRPRSEEQKVCFYKLLTGALERDCGIS 99 (131)
T ss_dssp EEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 567777 678889999999999999888888876
No 90
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=24.38 E-value=68 Score=22.85 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=30.0
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHH
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIY 66 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIF 66 (212)
|.|.|....+++.. ...|.+.|.+...+.+|.|-=|
T Consensus 2 P~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~ 37 (115)
T 2xcz_A 2 PLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKY 37 (115)
T ss_dssp CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHH
Confidence 78888866778777 8999999999999999999544
No 91
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=24.15 E-value=35 Score=26.34 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=11.6
Q ss_pred EEEEEeCCCCCCCC
Q 028191 16 ALIFSHTEKYPDEP 29 (212)
Q Consensus 16 ~L~f~~p~~YP~e~ 29 (212)
.+.|++||+||.+|
T Consensus 51 ~V~V~~TPT~p~Cp 64 (130)
T 3ux2_A 51 LVIIRFTPTVPHCS 64 (130)
T ss_dssp EEEECCCCCCCSSC
T ss_pred eEEEEEEeCCCCCC
Confidence 47789999999865
No 92
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=23.73 E-value=88 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCceEEecCCC-CCHHhHHHHHHHHHHHHHHhcCCh
Q 028191 29 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 63 (212)
Q Consensus 29 ~P~i~i~~~~g-L~~~~l~~L~~~L~~~aeenlGm~ 63 (212)
.|.+.|.-.+| ++..++..|.+.|.+..-+. |.|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P 56 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLP 56 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcC
Confidence 79999987788 69999999999999988888 999
No 93
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=23.16 E-value=1e+02 Score=21.78 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=28.8
Q ss_pred CceEEecCCCCCHHhHHHHHHHHHHHHH-HhcCChHH
Q 028191 30 PLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMI 65 (212)
Q Consensus 30 P~i~i~~~~gL~~~~l~~L~~~L~~~ae-enlGm~MI 65 (212)
|.+.|....++++. ...|.+.|.+... +.+|.|-=
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~ 36 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPED 36 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHH
Confidence 77888766677777 8999999999888 99999943
No 94
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=21.01 E-value=48 Score=32.10 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=29.4
Q ss_pred cccccccCCceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHH
Q 028191 3 ISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEK 51 (212)
Q Consensus 3 ~~~~~~~~~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~ 51 (212)
|+|-|.-..+..+.|.|+.+++|| +=++.|....+-...++..|++.
T Consensus 88 ~~~~Lr~g~~~~f~~~~~~~~~~p--vDly~LmD~S~SM~ddi~~lk~l 134 (690)
T 3fcs_B 88 IALRLRPDDSKNFSIQVRQVEDYP--VDIYYLMDLSYSMKDDLWSIQNL 134 (690)
T ss_dssp EEEEECTTCEEEEEEEEECCBTCC--EEEEEEEECSGGGHHHHHHTTTT
T ss_pred EEEEeccCCcEEEEEEEeccCCCC--ccEEEEecCCcchHHHHHHHHHH
Confidence 456667778899999999999999 33344444333233455444433
No 95
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=20.91 E-value=1.3e+02 Score=22.62 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHH
Q 028191 26 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMI 65 (212)
Q Consensus 26 P~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MI 65 (212)
+...|.+.|..-.++++.....|.+.|.+...+.+|-|-=
T Consensus 19 ~~~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~ 58 (135)
T 3t5s_A 19 PGSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVS 58 (135)
T ss_dssp --CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGG
T ss_pred CCCcceEEEEecCccchhccchhHHHHHHHHHHhhCCchH
Confidence 3446999998777788788899999999988888898843
Done!