Query 028192
Match_columns 212
No_of_seqs 210 out of 1975
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 7.1E-28 1.5E-32 176.5 14.8 138 71-211 11-157 (160)
2 KOG0027 Calmodulin and related 99.9 7.2E-26 1.6E-30 167.9 14.7 136 74-211 2-150 (151)
3 KOG0028 Ca2+-binding protein ( 99.9 8.1E-23 1.8E-27 146.9 13.6 136 73-210 26-170 (172)
4 PTZ00183 centrin; Provisional 99.9 6.2E-22 1.3E-26 147.4 15.4 139 72-212 9-156 (158)
5 PTZ00184 calmodulin; Provision 99.9 2.1E-21 4.5E-26 142.9 14.7 137 72-210 3-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 4E-21 8.6E-26 137.3 13.6 132 73-210 25-165 (171)
7 KOG0030 Myosin essential light 99.9 1.4E-21 2.9E-26 137.4 10.7 134 74-210 5-151 (152)
8 KOG0037 Ca2+-binding protein, 99.9 4.7E-21 1E-25 144.8 13.1 131 79-210 56-188 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.8 1.5E-18 3.2E-23 131.5 13.1 136 72-212 25-177 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.2E-17 2.6E-22 126.7 11.5 137 72-210 21-175 (193)
11 KOG0036 Predicted mitochondria 99.7 1.6E-15 3.5E-20 124.3 12.2 136 76-212 10-148 (463)
12 cd05022 S-100A13 S-100A13: S-1 99.5 2.9E-13 6.3E-18 90.8 7.3 66 144-210 7-75 (89)
13 PLN02964 phosphatidylserine de 99.4 8.3E-13 1.8E-17 116.6 11.8 112 72-189 135-272 (644)
14 PF13499 EF-hand_7: EF-hand do 99.4 1.7E-12 3.7E-17 82.5 7.5 62 146-208 1-66 (66)
15 KOG4223 Reticulocalbin, calume 99.4 9.8E-13 2.1E-17 105.3 7.4 129 77-206 160-301 (325)
16 KOG4223 Reticulocalbin, calume 99.4 2.8E-12 6.2E-17 102.6 8.9 132 78-210 75-228 (325)
17 cd05027 S-100B S-100B: S-100B 99.4 4.6E-12 1E-16 85.0 8.2 66 144-210 7-79 (88)
18 KOG0038 Ca2+-binding kinase in 99.3 6.2E-11 1.3E-15 84.5 9.9 136 72-212 20-179 (189)
19 cd05029 S-100A6 S-100A6: S-100 99.2 4.3E-11 9.3E-16 80.3 7.9 65 145-210 10-79 (88)
20 cd05031 S-100A10_like S-100A10 99.2 5.5E-11 1.2E-15 81.0 7.9 66 144-210 7-79 (94)
21 cd05025 S-100A1 S-100A1: S-100 99.2 9.9E-11 2.1E-15 79.4 8.3 67 144-210 8-80 (92)
22 cd05026 S-100Z S-100Z: S-100Z 99.2 1E-10 2.2E-15 79.5 8.2 66 145-210 10-81 (93)
23 PF13833 EF-hand_8: EF-hand do 99.2 6.3E-11 1.4E-15 72.1 6.3 53 158-211 1-54 (54)
24 KOG0027 Calmodulin and related 99.2 2E-10 4.4E-15 85.0 8.8 95 116-210 7-113 (151)
25 cd00052 EH Eps15 homology doma 99.2 1.6E-10 3.4E-15 73.4 7.0 59 148-209 2-60 (67)
26 smart00027 EH Eps15 homology d 99.2 2.2E-10 4.7E-15 78.3 8.1 64 144-210 9-72 (96)
27 KOG0037 Ca2+-binding protein, 99.1 8.7E-11 1.9E-15 89.4 5.2 117 79-209 93-219 (221)
28 KOG0377 Protein serine/threoni 99.1 5.5E-10 1.2E-14 92.9 9.8 127 80-209 464-614 (631)
29 cd00213 S-100 S-100: S-100 dom 99.1 4.2E-10 9.2E-15 75.6 7.6 67 144-210 7-79 (88)
30 PF13499 EF-hand_7: EF-hand do 99.1 7.6E-10 1.6E-14 70.1 7.9 66 81-171 1-66 (66)
31 PTZ00183 centrin; Provisional 99.1 1E-09 2.2E-14 81.4 9.6 94 117-210 17-118 (158)
32 cd05023 S-100A11 S-100A11: S-1 99.0 1.3E-09 2.7E-14 73.3 7.9 67 144-210 8-80 (89)
33 cd05022 S-100A13 S-100A13: S-1 99.0 3.4E-10 7.4E-15 75.9 5.1 62 77-139 5-69 (89)
34 cd00051 EFh EF-hand, calcium b 99.0 1.4E-09 3.1E-14 67.0 7.7 61 147-208 2-62 (63)
35 COG5126 FRQ1 Ca2+-binding prot 99.0 1.9E-09 4.2E-14 79.4 9.4 93 117-210 20-120 (160)
36 PLN02964 phosphatidylserine de 99.0 1.6E-09 3.4E-14 96.1 9.4 121 85-210 112-243 (644)
37 PTZ00184 calmodulin; Provision 99.0 3.8E-09 8.1E-14 77.3 9.7 94 117-210 11-112 (149)
38 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.8E-09 3.8E-14 76.0 7.4 64 141-209 44-107 (116)
39 cd05027 S-100B S-100B: S-100B 99.0 1.3E-09 2.8E-14 73.1 6.0 62 77-139 5-73 (88)
40 smart00027 EH Eps15 homology d 98.9 2.5E-09 5.4E-14 73.0 6.2 69 74-173 4-72 (96)
41 PF14658 EF-hand_9: EF-hand do 98.9 6E-09 1.3E-13 65.0 7.0 62 149-210 2-64 (66)
42 cd05030 calgranulins Calgranul 98.9 4.8E-09 1E-13 70.4 6.9 66 144-210 7-79 (88)
43 KOG0041 Predicted Ca2+-binding 98.9 2.2E-09 4.8E-14 80.6 5.1 75 135-210 89-163 (244)
44 KOG0044 Ca2+ sensor (EF-Hand s 98.9 8.5E-09 1.8E-13 78.5 7.4 92 81-173 65-175 (193)
45 KOG0028 Ca2+-binding protein ( 98.8 2.5E-08 5.4E-13 72.4 7.4 93 117-210 33-134 (172)
46 cd05031 S-100A10_like S-100A10 98.8 1.3E-08 2.9E-13 69.2 5.7 58 77-135 5-69 (94)
47 cd05025 S-100A1 S-100A1: S-100 98.8 1.8E-08 3.9E-13 68.2 6.0 60 78-137 7-72 (92)
48 cd05029 S-100A6 S-100A6: S-100 98.8 2.3E-08 5.1E-13 67.0 5.8 62 77-139 7-73 (88)
49 cd05026 S-100Z S-100Z: S-100Z 98.7 3.1E-08 6.7E-13 67.2 6.0 73 77-174 7-82 (93)
50 cd00213 S-100 S-100: S-100 dom 98.7 2.7E-08 6E-13 66.7 5.3 63 76-138 4-72 (88)
51 KOG0040 Ca2+-binding actin-bun 98.7 1.3E-07 2.8E-12 88.4 11.0 130 71-209 2244-2397(2399)
52 KOG0041 Predicted Ca2+-binding 98.7 8.8E-08 1.9E-12 72.1 6.8 101 73-174 92-204 (244)
53 KOG0031 Myosin regulatory ligh 98.6 7.9E-08 1.7E-12 69.4 5.8 68 136-208 23-90 (171)
54 cd00052 EH Eps15 homology doma 98.6 4.7E-08 1E-12 61.8 4.2 52 83-137 2-53 (67)
55 KOG2562 Protein phosphatase 2 98.6 3.6E-07 7.8E-12 76.8 8.8 134 69-206 267-420 (493)
56 PF00036 EF-hand_1: EF hand; 98.6 9.7E-08 2.1E-12 50.1 3.4 27 147-173 2-28 (29)
57 cd05024 S-100A10 S-100A10: A s 98.5 8.1E-07 1.8E-11 59.3 8.0 64 144-209 7-75 (91)
58 KOG4251 Calcium binding protei 98.5 1.5E-07 3.2E-12 73.2 5.0 128 79-207 100-261 (362)
59 cd00051 EFh EF-hand, calcium b 98.5 2.3E-07 5E-12 56.9 4.7 57 82-139 2-58 (63)
60 cd05023 S-100A11 S-100A11: S-1 98.5 4E-07 8.7E-12 61.1 5.9 74 77-174 6-81 (89)
61 cd00252 SPARC_EC SPARC_EC; ext 98.5 3.2E-07 7E-12 64.5 5.4 64 75-171 43-106 (116)
62 KOG0034 Ca2+/calmodulin-depend 98.4 5.5E-07 1.2E-11 68.6 6.5 92 83-174 69-176 (187)
63 PF13405 EF-hand_6: EF-hand do 98.4 3.4E-07 7.3E-12 48.9 3.4 30 146-175 1-31 (31)
64 PF00036 EF-hand_1: EF hand; 98.4 4.4E-07 9.6E-12 47.6 3.7 29 81-109 1-29 (29)
65 KOG0036 Predicted mitochondria 98.4 2E-06 4.3E-11 71.5 9.1 117 79-207 50-180 (463)
66 KOG2643 Ca2+ binding protein, 98.4 6.7E-07 1.5E-11 74.7 6.3 125 83-211 321-454 (489)
67 KOG0030 Myosin essential light 98.4 1.6E-06 3.5E-11 61.7 6.7 70 140-210 6-77 (152)
68 PF13405 EF-hand_6: EF-hand do 98.3 9E-07 2E-11 47.2 3.7 30 81-110 1-31 (31)
69 KOG2643 Ca2+ binding protein, 98.3 1.2E-06 2.5E-11 73.4 5.6 125 82-209 235-383 (489)
70 PF13833 EF-hand_8: EF-hand do 98.2 1E-06 2.2E-11 53.3 3.0 51 94-172 2-52 (54)
71 KOG4666 Predicted phosphate ac 98.2 1.2E-06 2.7E-11 70.6 4.3 94 116-211 258-360 (412)
72 PF14658 EF-hand_9: EF-hand do 98.2 1.6E-06 3.5E-11 54.1 3.7 55 85-139 3-58 (66)
73 PF12763 EF-hand_4: Cytoskelet 98.2 8.7E-06 1.9E-10 56.1 7.7 63 143-209 8-70 (104)
74 cd05030 calgranulins Calgranul 98.2 3.1E-06 6.8E-11 56.7 4.8 73 77-174 5-80 (88)
75 KOG0169 Phosphoinositide-speci 98.2 2E-05 4.3E-10 70.3 10.7 131 77-210 133-274 (746)
76 KOG4251 Calcium binding protei 98.1 7.7E-06 1.7E-10 63.7 6.6 126 81-207 199-342 (362)
77 PRK12309 transaldolase/EF-hand 98.1 9.5E-06 2.1E-10 68.7 6.7 57 140-210 329-385 (391)
78 KOG1707 Predicted Ras related/ 98.1 3.8E-05 8.3E-10 66.8 10.2 149 58-209 173-376 (625)
79 PF13202 EF-hand_5: EF hand; P 98.0 6.9E-06 1.5E-10 41.4 2.9 23 148-170 2-24 (25)
80 PF12763 EF-hand_4: Cytoskelet 98.0 7.2E-06 1.6E-10 56.6 3.2 62 74-139 4-65 (104)
81 KOG0751 Mitochondrial aspartat 97.9 9.2E-05 2E-09 63.2 9.9 99 77-175 33-138 (694)
82 PF14788 EF-hand_10: EF hand; 97.9 5.9E-05 1.3E-09 44.5 5.8 48 162-210 2-49 (51)
83 PF09279 EF-hand_like: Phospho 97.9 5.1E-05 1.1E-09 50.1 6.3 64 146-210 1-69 (83)
84 PF13202 EF-hand_5: EF hand; P 97.9 2.2E-05 4.8E-10 39.6 3.1 25 82-106 1-25 (25)
85 KOG0040 Ca2+-binding actin-bun 97.8 5.1E-05 1.1E-09 71.9 6.9 69 143-211 2251-2325(2399)
86 PF10591 SPARC_Ca_bdg: Secrete 97.8 1E-05 2.2E-10 56.8 1.9 64 141-207 50-113 (113)
87 KOG2562 Protein phosphatase 2 97.8 0.00013 2.8E-09 61.8 8.4 125 82-210 176-343 (493)
88 KOG1029 Endocytic adaptor prot 97.6 0.0005 1.1E-08 61.6 10.1 61 145-208 195-255 (1118)
89 PRK12309 transaldolase/EF-hand 97.6 9E-05 2E-09 62.8 5.2 56 114-174 331-386 (391)
90 KOG0046 Ca2+-binding actin-bun 97.6 0.00019 4.2E-09 61.6 7.0 66 143-209 17-84 (627)
91 KOG0377 Protein serine/threoni 97.6 7.9E-05 1.7E-09 62.8 4.5 58 81-138 548-608 (631)
92 cd05024 S-100A10 S-100A10: A s 97.6 0.00023 5.1E-09 47.6 5.9 73 77-174 5-77 (91)
93 KOG0046 Ca2+-binding actin-bun 97.6 0.0001 2.2E-09 63.2 5.2 70 70-140 9-80 (627)
94 KOG4065 Uncharacterized conser 97.6 0.00027 5.7E-09 48.8 6.2 59 149-207 71-142 (144)
95 KOG0751 Mitochondrial aspartat 97.5 0.00011 2.4E-09 62.7 3.9 120 83-206 111-240 (694)
96 KOG0038 Ca2+-binding kinase in 97.4 0.00039 8.5E-09 50.1 5.5 91 84-174 75-178 (189)
97 PF05042 Caleosin: Caleosin re 97.4 0.0075 1.6E-07 45.0 11.9 128 79-208 6-164 (174)
98 smart00054 EFh EF-hand, calciu 97.1 0.00076 1.6E-08 33.9 3.2 26 147-172 2-27 (29)
99 KOG4666 Predicted phosphate ac 97.0 0.00085 1.8E-08 54.6 4.0 97 79-175 258-361 (412)
100 PF14788 EF-hand_10: EF hand; 96.9 0.0009 1.9E-08 39.5 2.4 37 97-134 2-38 (51)
101 smart00054 EFh EF-hand, calciu 96.8 0.0017 3.7E-08 32.5 3.1 28 81-108 1-28 (29)
102 KOG3555 Ca2+-binding proteogly 96.6 0.005 1.1E-07 50.5 5.5 67 139-210 244-310 (434)
103 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.011 2.3E-07 41.5 5.8 56 114-169 51-112 (113)
104 KOG1955 Ral-GTPase effector RA 96.3 0.0078 1.7E-07 51.8 5.4 67 140-209 226-292 (737)
105 PF05042 Caleosin: Caleosin re 96.1 0.028 6.2E-07 42.0 6.9 34 179-212 93-126 (174)
106 KOG0035 Ca2+-binding actin-bun 95.7 0.027 5.9E-07 52.0 6.1 98 70-169 737-848 (890)
107 KOG1955 Ral-GTPase effector RA 95.4 0.031 6.7E-07 48.2 5.1 65 72-139 223-287 (737)
108 PF05517 p25-alpha: p25-alpha 95.2 0.13 2.9E-06 38.0 7.6 63 148-210 2-69 (154)
109 KOG1029 Endocytic adaptor prot 95.2 0.048 1.1E-06 49.5 5.9 58 78-138 193-250 (1118)
110 PLN02952 phosphoinositide phos 95.0 0.33 7.1E-06 43.7 10.5 67 143-210 36-110 (599)
111 KOG4578 Uncharacterized conser 94.9 0.019 4.2E-07 46.9 2.5 65 146-210 334-398 (421)
112 KOG4065 Uncharacterized conser 94.8 0.073 1.6E-06 37.0 4.7 38 71-110 60-97 (144)
113 PF08726 EFhand_Ca_insen: Ca2+ 94.7 0.017 3.8E-07 36.5 1.4 57 142-207 3-66 (69)
114 KOG2243 Ca2+ release channel ( 94.6 0.062 1.3E-06 51.7 5.2 59 149-209 4061-4119(5019)
115 KOG3866 DNA-binding protein of 94.6 0.11 2.4E-06 42.4 6.0 61 148-208 247-322 (442)
116 PF09069 EF-hand_3: EF-hand; 94.4 0.49 1.1E-05 31.6 7.8 65 144-211 2-76 (90)
117 KOG1265 Phospholipase C [Lipid 94.1 0.79 1.7E-05 42.7 10.9 117 90-210 158-299 (1189)
118 KOG0998 Synaptic vesicle prote 93.9 0.1 2.2E-06 48.9 5.2 61 145-208 283-343 (847)
119 KOG0169 Phosphoinositide-speci 93.0 0.49 1.1E-05 43.1 7.7 91 114-209 133-231 (746)
120 KOG0035 Ca2+-binding actin-bun 92.9 0.29 6.4E-06 45.5 6.3 67 144-210 746-816 (890)
121 PLN02222 phosphoinositide phos 92.3 0.65 1.4E-05 41.7 7.6 69 140-210 20-90 (581)
122 KOG0042 Glycerol-3-phosphate d 92.2 0.34 7.3E-06 42.9 5.5 64 146-210 594-657 (680)
123 PLN02228 Phosphoinositide phos 91.6 1 2.2E-05 40.4 7.9 69 140-210 19-92 (567)
124 KOG0042 Glycerol-3-phosphate d 90.9 0.3 6.5E-06 43.1 3.9 61 73-134 586-646 (680)
125 PLN02230 phosphoinositide phos 90.5 1.4 2.9E-05 39.8 7.7 69 141-210 25-102 (598)
126 PF09279 EF-hand_like: Phospho 89.6 1.9 4.1E-05 28.0 6.1 69 81-174 1-70 (83)
127 KOG3555 Ca2+-binding proteogly 88.8 1 2.2E-05 37.4 5.2 55 79-138 249-303 (434)
128 KOG0998 Synaptic vesicle prote 86.7 1.2 2.6E-05 42.0 5.0 123 80-209 11-189 (847)
129 PLN02223 phosphoinositide phos 86.6 4.2 9.1E-05 36.2 8.0 69 141-210 12-92 (537)
130 KOG4578 Uncharacterized conser 84.0 0.34 7.5E-06 39.9 0.1 57 118-174 334-399 (421)
131 PF05517 p25-alpha: p25-alpha 79.1 17 0.00037 26.8 7.7 85 83-174 2-91 (154)
132 PF14513 DAG_kinase_N: Diacylg 78.0 4 8.6E-05 29.6 3.9 50 157-209 3-59 (138)
133 cd08315 Death_TRAILR_DR4_DR5 D 76.8 20 0.00043 24.2 8.8 88 80-189 4-91 (96)
134 PF08726 EFhand_Ca_insen: Ca2+ 76.5 3.6 7.9E-05 26.0 3.0 27 80-107 6-32 (69)
135 KOG3449 60S acidic ribosomal p 75.9 20 0.00044 24.7 6.5 44 147-191 3-46 (112)
136 PLN02952 phosphoinositide phos 75.4 9.8 0.00021 34.5 6.4 52 158-210 13-65 (599)
137 KOG1707 Predicted Ras related/ 73.4 5.5 0.00012 35.7 4.3 39 73-111 308-346 (625)
138 KOG1264 Phospholipase C [Lipid 73.2 6.4 0.00014 36.8 4.7 139 72-211 135-294 (1267)
139 KOG3866 DNA-binding protein of 72.3 1.9 4.1E-05 35.4 1.1 24 84-107 248-271 (442)
140 PF14513 DAG_kinase_N: Diacylg 71.8 12 0.00027 27.1 5.1 73 95-191 6-78 (138)
141 KOG4347 GTPase-activating prot 71.1 26 0.00055 31.9 7.8 57 81-139 556-612 (671)
142 KOG2243 Ca2+ release channel ( 70.6 3.6 7.8E-05 40.6 2.6 52 86-139 4063-4114(5019)
143 cd07313 terB_like_2 tellurium 69.6 7.4 0.00016 26.2 3.5 29 179-207 34-62 (104)
144 PF12174 RST: RCD1-SRO-TAF4 (R 68.3 6.1 0.00013 25.0 2.6 28 147-174 27-54 (70)
145 KOG2871 Uncharacterized conser 68.1 8.6 0.00019 32.5 4.1 58 79-137 308-366 (449)
146 PF00046 Homeobox: Homeobox do 67.1 23 0.0005 20.7 6.4 45 73-125 6-50 (57)
147 PF07499 RuvA_C: RuvA, C-termi 65.5 21 0.00046 20.4 4.4 39 164-207 3-41 (47)
148 cd00086 homeodomain Homeodomai 65.4 25 0.00054 20.5 6.4 45 73-125 6-50 (59)
149 TIGR01848 PHA_reg_PhaR polyhyd 65.3 20 0.00044 24.6 4.8 48 152-200 10-67 (107)
150 KOG4347 GTPase-activating prot 65.0 8.5 0.00018 34.9 3.7 50 146-196 556-605 (671)
151 PF07308 DUF1456: Protein of u 64.7 25 0.00055 22.1 4.9 27 164-191 16-42 (68)
152 KOG0039 Ferric reductase, NADH 64.5 18 0.00038 33.4 5.7 75 134-209 4-88 (646)
153 KOG2871 Uncharacterized conser 63.7 7.1 0.00015 33.0 2.8 62 142-204 306-368 (449)
154 PF07879 PHB_acc_N: PHB/PHA ac 61.3 16 0.00034 22.7 3.3 39 152-191 10-58 (64)
155 KOG3449 60S acidic ribosomal p 61.0 35 0.00076 23.6 5.3 45 82-127 3-47 (112)
156 PF00404 Dockerin_1: Dockerin 60.6 16 0.00035 17.3 2.6 16 155-170 1-16 (21)
157 KOG0493 Transcription factor E 59.6 91 0.002 25.2 8.1 47 70-124 249-295 (342)
158 COG4103 Uncharacterized protei 57.9 71 0.0015 23.3 7.4 58 149-209 34-93 (148)
159 PF03979 Sigma70_r1_1: Sigma-7 57.8 13 0.00028 24.2 2.8 34 158-194 18-51 (82)
160 PF01325 Fe_dep_repress: Iron 57.7 40 0.00088 20.4 4.9 48 74-129 2-49 (60)
161 PF02761 Cbl_N2: CBL proto-onc 56.6 55 0.0012 21.6 6.1 50 159-209 20-69 (85)
162 PTZ00373 60S Acidic ribosomal 56.2 47 0.001 23.2 5.4 45 82-127 5-49 (112)
163 TIGR01565 homeo_ZF_HD homeobox 54.7 46 0.001 20.2 4.8 35 72-111 6-44 (58)
164 cd08316 Death_FAS_TNFRSF6 Deat 53.7 67 0.0015 21.7 8.0 78 96-190 17-94 (97)
165 PF13543 KSR1-SAM: SAM like do 52.2 59 0.0013 23.3 5.5 27 95-124 62-88 (129)
166 KOG0506 Glutaminase (contains 51.2 46 0.001 29.3 5.7 41 85-126 91-131 (622)
167 cd07316 terB_like_DjlA N-termi 50.9 58 0.0013 21.7 5.4 12 162-173 53-64 (106)
168 PF08414 NADPH_Ox: Respiratory 50.9 51 0.0011 22.4 4.7 59 145-209 30-91 (100)
169 PF05099 TerB: Tellurite resis 50.9 6.1 0.00013 28.2 0.4 13 160-172 38-50 (140)
170 PF11116 DUF2624: Protein of u 50.2 72 0.0016 21.0 6.2 34 160-194 13-46 (85)
171 KOG4004 Matricellular protein 49.9 6.4 0.00014 30.3 0.4 56 149-208 191-248 (259)
172 PF09068 EF-hand_2: EF hand; 49.5 21 0.00045 25.5 2.9 30 145-174 97-126 (127)
173 cd05833 Ribosomal_P2 Ribosomal 48.8 75 0.0016 22.0 5.5 43 84-127 5-47 (109)
174 PF01023 S_100: S-100/ICaBP ty 48.6 49 0.0011 18.7 4.4 31 78-108 4-36 (44)
175 KOG0719 Molecular chaperone (D 48.5 67 0.0015 25.6 5.8 75 101-191 58-132 (264)
176 PTZ00373 60S Acidic ribosomal 48.0 80 0.0017 22.0 5.5 44 147-191 5-48 (112)
177 KOG0843 Transcription factor E 47.3 57 0.0012 24.8 5.0 49 69-125 104-152 (197)
178 cd07978 TAF13 The TATA Binding 44.5 55 0.0012 21.9 4.2 49 164-212 5-68 (92)
179 PF08414 NADPH_Ox: Respiratory 44.1 56 0.0012 22.2 4.1 67 78-175 28-94 (100)
180 PF09851 SHOCT: Short C-termin 43.6 48 0.001 17.1 4.0 26 77-108 3-28 (31)
181 COG3877 Uncharacterized protei 43.5 47 0.001 22.8 3.7 41 166-209 77-121 (122)
182 PF06992 Phage_lambda_P: Repli 43.2 81 0.0017 25.1 5.5 58 114-171 121-178 (233)
183 PF11251 DUF3050: Protein of u 42.0 1.8E+02 0.0038 23.1 9.9 111 88-210 69-183 (232)
184 PF12419 DUF3670: SNF2 Helicas 41.3 54 0.0012 23.7 4.2 51 157-207 79-138 (141)
185 PLN00138 large subunit ribosom 41.2 1.1E+02 0.0024 21.3 5.5 42 85-127 6-47 (113)
186 PF04157 EAP30: EAP30/Vps36 fa 41.2 1.7E+02 0.0037 22.8 10.9 110 77-192 94-215 (223)
187 cd05833 Ribosomal_P2 Ribosomal 41.1 1.2E+02 0.0025 21.1 5.5 43 148-191 4-46 (109)
188 TIGR01639 P_fal_TIGR01639 Plas 41.0 72 0.0016 19.4 4.1 31 160-191 8-38 (61)
189 smart00389 HOX Homeodomain. DN 40.9 71 0.0015 18.3 6.0 44 74-125 7-50 (56)
190 PF08461 HTH_12: Ribonuclease 40.3 54 0.0012 20.3 3.5 37 158-195 10-46 (66)
191 PF09107 SelB-wing_3: Elongati 38.0 62 0.0013 18.9 3.3 31 94-130 8-38 (50)
192 PF01885 PTS_2-RNA: RNA 2'-pho 37.8 55 0.0012 24.9 3.9 37 155-192 26-62 (186)
193 PRK00819 RNA 2'-phosphotransfe 37.7 66 0.0014 24.4 4.2 37 155-192 27-63 (179)
194 KOG4403 Cell surface glycoprot 37.6 84 0.0018 27.4 5.1 86 114-210 65-159 (575)
195 PF06569 DUF1128: Protein of u 37.5 80 0.0017 20.1 3.9 44 130-175 24-67 (71)
196 cd07894 Adenylation_RNA_ligase 37.3 2.3E+02 0.0049 24.0 7.8 90 86-175 131-240 (342)
197 KOG4286 Dystrophin-like protei 36.9 2E+02 0.0043 27.2 7.6 89 119-211 472-581 (966)
198 PRK09430 djlA Dna-J like membr 36.6 1.1E+02 0.0024 24.8 5.6 10 159-168 69-78 (267)
199 PF11848 DUF3368: Domain of un 36.1 85 0.0018 18.0 3.7 33 158-191 14-47 (48)
200 PF11829 DUF3349: Protein of u 35.8 1.2E+02 0.0026 20.5 4.8 55 71-128 33-87 (96)
201 KOG2301 Voltage-gated Ca2+ cha 35.0 27 0.00058 35.6 2.1 38 73-110 1410-1447(1592)
202 PF15325 MRI: Modulator of ret 34.4 1.5E+02 0.0032 20.1 5.9 10 77-86 95-104 (106)
203 KOG3095 Transcription initiati 34.3 2.6E+02 0.0056 22.9 9.3 30 140-171 137-166 (284)
204 PF09068 EF-hand_2: EF hand; 34.0 57 0.0012 23.2 3.2 27 82-108 99-125 (127)
205 KOG4403 Cell surface glycoprot 34.0 2.8E+02 0.0061 24.3 7.7 30 79-108 67-96 (575)
206 PF01885 PTS_2-RNA: RNA 2'-pho 34.0 77 0.0017 24.2 4.1 37 90-127 26-62 (186)
207 TIGR01209 RNA ligase, Pab1020 33.7 3.1E+02 0.0067 23.6 8.0 98 85-183 162-280 (374)
208 TIGR02675 tape_meas_nterm tape 33.4 56 0.0012 20.8 2.8 17 157-173 26-42 (75)
209 PF13551 HTH_29: Winged helix- 33.3 1.5E+02 0.0032 19.7 6.4 51 74-125 58-110 (112)
210 PF04157 EAP30: EAP30/Vps36 fa 33.2 1.8E+02 0.0039 22.7 6.2 41 157-197 109-151 (223)
211 PF09069 EF-hand_3: EF-hand; 33.1 1.5E+02 0.0032 19.8 8.7 73 80-173 3-75 (90)
212 PF03672 UPF0154: Uncharacteri 32.4 1.2E+02 0.0026 18.8 4.0 32 94-126 29-60 (64)
213 TIGR02787 codY_Gpos GTP-sensin 32.4 1.5E+02 0.0033 23.8 5.5 50 72-128 175-224 (251)
214 PF12793 SgrR_N: Sugar transpo 32.3 1.4E+02 0.003 20.8 4.9 41 145-192 4-44 (115)
215 PRK12373 NADH dehydrogenase su 32.2 2E+02 0.0044 24.8 6.7 118 74-192 15-170 (400)
216 PRK00819 RNA 2'-phosphotransfe 32.2 95 0.0021 23.6 4.3 36 90-126 27-62 (179)
217 TIGR03573 WbuX N-acetyl sugar 32.1 97 0.0021 26.0 4.8 43 159-208 300-342 (343)
218 KOG1954 Endocytosis/signaling 31.5 69 0.0015 27.6 3.7 56 146-205 445-500 (532)
219 PHA02943 hypothetical protein; 31.2 2.2E+02 0.0048 21.1 6.6 90 74-172 5-105 (165)
220 PF08002 DUF1697: Protein of u 31.0 89 0.0019 22.5 3.9 60 153-212 10-90 (137)
221 PF09336 Vps4_C: Vps4 C termin 30.9 75 0.0016 19.4 3.0 27 161-188 29-55 (62)
222 PF04361 DUF494: Protein of un 30.4 2E+02 0.0044 21.2 5.7 43 145-190 3-46 (155)
223 KOG2301 Voltage-gated Ca2+ cha 30.3 47 0.001 34.0 2.9 67 140-208 1412-1482(1592)
224 PF00690 Cation_ATPase_N: Cati 29.9 60 0.0013 19.9 2.5 33 147-179 6-38 (69)
225 KOG4286 Dystrophin-like protei 29.6 2.5E+02 0.0054 26.6 7.0 49 146-195 471-519 (966)
226 COG1321 TroR Mn-dependent tran 29.4 96 0.0021 22.8 3.9 49 144-202 9-57 (154)
227 KOG4004 Matricellular protein 29.3 30 0.00064 26.8 1.1 25 82-106 224-248 (259)
228 PLN00138 large subunit ribosom 29.2 2E+02 0.0044 20.0 5.5 42 149-191 5-46 (113)
229 PF06163 DUF977: Bacterial pro 28.9 2E+02 0.0043 20.6 5.1 52 72-130 3-54 (127)
230 PF12486 DUF3702: ImpA domain 28.8 1.1E+02 0.0024 22.4 4.0 33 77-109 66-98 (148)
231 PRK07571 bidirectional hydroge 28.8 1.7E+02 0.0037 21.9 5.2 117 74-191 16-167 (169)
232 cd07176 terB tellurite resista 28.5 40 0.00087 22.6 1.7 8 195-202 90-97 (111)
233 PHA02105 hypothetical protein 28.5 1.4E+02 0.0031 18.1 3.7 48 161-208 4-55 (68)
234 PRK00523 hypothetical protein; 27.8 1.6E+02 0.0036 18.7 4.1 32 94-126 37-68 (72)
235 TIGR01446 DnaD_dom DnaD and ph 27.8 86 0.0019 19.4 3.0 49 151-201 2-50 (73)
236 PRK14981 DNA-directed RNA poly 27.7 1.3E+02 0.0028 20.9 4.0 28 163-191 80-107 (112)
237 cd08330 CARD_ASC_NALP1 Caspase 27.2 1.7E+02 0.0036 18.9 4.3 47 158-210 26-72 (82)
238 cd02977 ArsC_family Arsenate R 27.0 2E+02 0.0042 19.2 4.9 50 161-212 35-87 (105)
239 PF08671 SinI: Anti-repressor 26.3 78 0.0017 16.4 2.1 8 180-187 18-25 (30)
240 PF07261 DnaB_2: Replication i 26.3 1E+02 0.0022 19.1 3.2 44 150-193 1-44 (77)
241 PF02885 Glycos_trans_3N: Glyc 25.8 1.3E+02 0.0029 18.3 3.6 32 160-191 13-44 (66)
242 cd04411 Ribosomal_P1_P2_L12p R 25.6 2.3E+02 0.0049 19.5 5.6 29 97-126 17-45 (105)
243 PF11020 DUF2610: Domain of un 25.6 1.6E+02 0.0035 19.1 3.8 32 178-209 45-76 (82)
244 KOG0488 Transcription factor B 25.4 1.7E+02 0.0037 24.3 5.0 48 70-125 175-222 (309)
245 KOG4301 Beta-dystrobrevin [Cyt 25.0 1.9E+02 0.0042 24.5 5.1 92 119-212 112-217 (434)
246 PLN02228 Phosphoinositide phos 24.6 4.6E+02 0.0099 24.0 7.8 47 80-128 24-71 (567)
247 KOG0506 Glutaminase (contains 24.3 1.4E+02 0.0031 26.5 4.4 60 149-209 90-157 (622)
248 PF09373 PMBR: Pseudomurein-bi 24.2 90 0.0019 16.3 2.1 15 159-173 2-16 (33)
249 PHA03309 transcriptional regul 24.1 91 0.002 29.9 3.4 10 22-31 1811-1820(2033)
250 KOG1785 Tyrosine kinase negati 24.1 4.8E+02 0.01 22.7 7.6 80 94-174 188-275 (563)
251 KOG1265 Phospholipase C [Lipid 24.0 1.8E+02 0.0039 28.1 5.2 44 164-211 207-250 (1189)
252 PRK10356 hypothetical protein; 24.0 3.1E+02 0.0068 22.4 6.1 52 72-123 109-160 (274)
253 PRK06402 rpl12p 50S ribosomal 23.0 2.6E+02 0.0057 19.3 5.7 31 96-127 16-46 (106)
254 PF12486 DUF3702: ImpA domain 23.0 1.2E+02 0.0025 22.3 3.3 30 145-174 69-98 (148)
255 cd08324 CARD_NOD1_CARD4 Caspas 23.0 2.3E+02 0.0051 18.6 5.2 47 158-210 26-72 (85)
256 PF07957 DUF3294: Protein of u 22.9 1.9E+02 0.0042 22.6 4.6 69 138-208 133-205 (216)
257 PLN02230 phosphoinositide phos 22.7 2.7E+02 0.0058 25.6 6.0 46 80-126 29-76 (598)
258 cd03035 ArsC_Yffb Arsenate Red 22.6 2E+02 0.0043 19.5 4.2 13 199-211 72-84 (105)
259 PF13623 SurA_N_2: SurA N-term 22.1 1.5E+02 0.0032 21.6 3.7 41 167-208 95-145 (145)
260 PF12995 DUF3879: Domain of un 22.1 2.6E+02 0.0056 21.0 4.8 55 98-159 3-57 (186)
261 KOG4368 Predicted RNA binding 22.0 1.4E+02 0.0031 27.1 4.1 9 6-14 619-627 (757)
262 PF06226 DUF1007: Protein of u 21.9 1.1E+02 0.0023 23.8 3.1 26 149-174 54-79 (212)
263 TIGR02613 mob_myst_B mobile my 21.8 1.5E+02 0.0033 22.4 3.9 52 156-209 126-186 (186)
264 PF02269 TFIID-18kDa: Transcri 21.7 37 0.0008 22.7 0.4 18 195-212 51-68 (93)
265 KOG2520 5'-3' exonuclease [Rep 21.6 3.9E+02 0.0084 25.6 6.9 107 99-206 468-594 (815)
266 PF07128 DUF1380: Protein of u 21.3 3.3E+02 0.0072 19.8 5.3 14 162-175 43-56 (139)
267 PF12728 HTH_17: Helix-turn-he 21.0 1.7E+02 0.0037 16.4 5.2 45 162-212 2-51 (51)
268 PF06384 ICAT: Beta-catenin-in 20.9 1.3E+02 0.0028 19.5 2.7 22 165-187 20-41 (78)
269 PRK05988 formate dehydrogenase 20.8 3.5E+02 0.0077 19.9 6.5 98 93-191 35-154 (156)
270 COG1460 Uncharacterized protei 20.7 1.8E+02 0.0039 20.3 3.6 30 162-192 80-109 (114)
271 PRK01844 hypothetical protein; 20.7 2.4E+02 0.0052 18.0 3.9 31 95-126 37-67 (72)
272 PF10437 Lip_prot_lig_C: Bacte 20.6 1.4E+02 0.003 19.2 3.0 42 164-208 44-86 (86)
273 cd03034 ArsC_ArsC Arsenate Red 20.5 2.9E+02 0.0063 18.8 4.9 15 161-175 35-49 (112)
274 PF08349 DUF1722: Protein of u 20.2 1.6E+02 0.0034 20.4 3.4 30 179-208 66-95 (117)
275 PF08976 DUF1880: Domain of un 20.1 26 0.00057 24.5 -0.6 26 114-139 4-29 (118)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=7.1e-28 Score=176.45 Aligned_cols=138 Identities=32% Similarity=0.571 Sum_probs=129.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CC
Q 028192 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EP 141 (212)
Q Consensus 71 ~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~ 141 (212)
..+|+.+++++|+++|..+|.|++|.|+..||..+|+.+|.. ++..++..|+..+|. +.+.|+|.+| ..
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~-~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFN-PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC-CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 446888999999999999999999999999999999999998 999999999999999 8899999976 45
Q ss_pred CChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 142 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 142 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
...+++.++|+.||.|++|+|+..||+.+|..+|. .++++++++||+.+|.|++|.|+|++|++.+...
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 66899999999999999999999999999999995 8999999999999999999999999999988754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=7.2e-26 Score=167.90 Aligned_cols=136 Identities=43% Similarity=0.674 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CCC--
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EPA-- 142 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~~-- 142 (212)
++..++.+++++|..+|.+++|+|+..||..+|+.+|.. ++..++..++..+|.+++|.|+|.+| ...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 456889999999999999999999999999999999998 99999999999999999999999966 111
Q ss_pred --ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 143 --CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 143 --~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
..++++.+|+.||.|++|+|++.||+.+|..+|. .++.+++..+++.+|.|+||.|+|++|+.+|...
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 3459999999999999999999999999999995 7999999999999999999999999999998754
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.1e-23 Score=146.89 Aligned_cols=136 Identities=34% Similarity=0.543 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CCCC
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EPAC 143 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~~~ 143 (212)
.+++++.++++..|..||.+++|+|+.+||..+++++|+. +...++..|+..+|.++.|.|+|++| ....
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE-~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFE-PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 3556888999999999999999999999999999999998 99999999999999999999999966 3458
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+++..+|+.+|.|++|.|+..+|+.+...+| ++++++++.+||..+|.+++|-|+-+||+.+|++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 89999999999999999999999999999999 5999999999999999999999999999999875
No 4
>PTZ00183 centrin; Provisional
Probab=99.89 E-value=6.2e-22 Score=147.40 Aligned_cols=139 Identities=32% Similarity=0.554 Sum_probs=127.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CCC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EPA 142 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~~ 142 (212)
.+++++++.++..+|..+|.+++|.|+..||..+|..+|.. ++...+..++..+|.+++|.|+|.+| ...
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 34677999999999999999999999999999999999986 88899999999999999999999977 223
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
..+.+..+|+.+|.+++|+|+.+||..++..+|. +++..++..++..+|.+++|.|+|++|+.++...|
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGE-TITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 4568999999999999999999999999999995 79999999999999999999999999999998654
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.88 E-value=2.1e-21 Score=142.93 Aligned_cols=137 Identities=35% Similarity=0.585 Sum_probs=125.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCC---------CC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCE---------PA 142 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~---------~~ 142 (212)
.+++++++.+++..|..+|.+++|.|+..||..++..++.. +....+..++..+|.+++|.|+|++|. ..
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 35778999999999999999999999999999999999986 888899999999999999999999762 23
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+.+..+|..||.+++|+|+.+||..++..+|. .++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-CCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 3467899999999999999999999999999986 689999999999999999999999999999864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=4e-21 Score=137.26 Aligned_cols=132 Identities=23% Similarity=0.366 Sum_probs=121.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CCCC
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EPAC 143 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~~~ 143 (212)
.|++.||++++++|..+|+|+||.|..++|+.+|.++|.. ++++++..|+.. ..|.|+|..| ...+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCH
Confidence 4778999999999999999999999999999999999998 999999999975 4578998844 3456
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
++.+..+|+.||.+++|+|..+.|+++|...|. .+++++++.|++.+-.|..|.|+|.+|+..|.+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 778999999999999999999999999999995 899999999999999999999999999999974
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=1.4e-21 Score=137.37 Aligned_cols=134 Identities=27% Similarity=0.409 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC--CCcccccCCC-----------C
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE--GDGRVGNSSC-----------E 140 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~--~~g~i~~~e~-----------~ 140 (212)
+++++..+++++|..||..+||.|+..++..+|+++|.+ +++.++.+.+...+.+ +-.+|+|++| .
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n-PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN-PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC-CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 455788999999999999999999999999999999998 9999999999998877 4578999966 5
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
....+.+.+.+++||++++|+|...||+++|..+| +.+++++++.++... .|.+|.|+|+.|++.+..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 56788999999999999999999999999999999 599999999999987 688899999999998763
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=4.7e-21 Score=144.84 Aligned_cols=131 Identities=25% Similarity=0.326 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--CCCChhHHHHHHHhhcC
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC--EPACEPELKETFDFFDA 156 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~--~~~~~~~l~~~F~~~D~ 156 (212)
-.++...|...|+|+.|.|+.+||+++|...+..+++.+.|+.|+..+|.+..|.|+|.|| ++.....|+.+|+.||+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4578889999999999999999999999877777799999999999999999999999999 77888999999999999
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 157 DHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
|++|.|+..||+++|..+|+ .++++..+.|++++|.-+.|.|.|++|+.++..
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy-~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGY-RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred CCCCcccHHHHHHHHHHcCc-CCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999998 899999999999999887999999999998753
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-18 Score=131.46 Aligned_cols=136 Identities=25% Similarity=0.395 Sum_probs=112.8
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcc-cccCCC---------C
Q 028192 72 ADISLDMNYELVQACKLLDRD-NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGR-VGNSSC---------E 140 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~-i~~~e~---------~ 140 (212)
..|+..|+..|...|..+|.+ ++|+|+.+||..++ .+.. +....+++..++.+++|. |+|++| .
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELAL----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhc----CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC
Confidence 348889999999999999999 99999999999999 3433 345677888888888887 999966 2
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCC--HHH----HHHHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCT--LDD----CRGMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls--~~~----~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
....+.++.+|+.||.+++|+|+.+||.+++..+-.+..+ ++. ++.+|..+|.|+||+|+|+||.+++.++|
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 2334589999999999999999999999999997433445 554 45568899999999999999999998764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-17 Score=126.68 Aligned_cols=137 Identities=21% Similarity=0.293 Sum_probs=117.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--------CCCC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC--------EPAC 143 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~--------~~~~ 143 (212)
.+|+..++.+|++-|.. ...+|.++.++|+.++..+....-+...+..+|..+|.|++|.|+|.+| .+..
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 45888999888888886 3458999999999999999864466788999999999999999999976 6677
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHh----CC------CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKL----GD------ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~------~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+.+.++|++||.|++|+|+.+|+..+++.+ |. +...++.+..+|+.+|.|+||.|+++||+.....
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 8899999999999999999999999999875 31 1223455888999999999999999999988754
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.65 E-value=1.6e-15 Score=124.31 Aligned_cols=136 Identities=29% Similarity=0.376 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---CCCChhHHHHHHH
Q 028192 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---EPACEPELKETFD 152 (212)
Q Consensus 76 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---~~~~~~~l~~~F~ 152 (212)
++...+++.+|..+|.+++|.|+..++...+..+....+....++.++..+|.|.+|.++|.+| ....+.++..+|.
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~ 89 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQ 89 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHh
Confidence 3556689999999999999999999999999999874366788899999999999999999998 4466778999999
Q ss_pred hhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 153 FFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 153 ~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
.+|.+.||.|+.+|+.+.|+.+|. .+++++++++++.+|+++.+.|+++||.+++...|
T Consensus 90 ~iD~~hdG~i~~~Ei~~~l~~~gi-~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 90 SIDLEHDGKIDPNEIWRYLKDLGI-QLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred hhccccCCccCHHHHHHHHHHhCC-ccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 999999999999999999999997 79999999999999999999999999999987543
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.45 E-value=2.9e-13 Score=90.79 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=60.8
Q ss_pred hhHHHHHHHhhcC-CCCCccCHHHHHHHHHH-hCCCCCCH-HHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDA-DHDGKITAEELFGVFTK-LGDELCTL-DDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~-d~~G~I~~~El~~~l~~-~g~~~ls~-~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+..+|+.||. +++|+|+..||+.+|.. +|. .++. +++++||+.+|.|+||+|+|+||+.+|..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3578899999999 99999999999999999 884 6888 99999999999999999999999998853
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.45 E-value=8.3e-13 Score=116.60 Aligned_cols=112 Identities=23% Similarity=0.359 Sum_probs=97.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCCHHH---HHHHHHhhcCCCCcccccCCC--------
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG-ADPPTQEE---VKSMLSEVDREGDGRVGNSSC-------- 139 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-~~~~s~~~---~~~l~~~~d~~~~g~i~~~e~-------- 139 (212)
.+|+..|+++++++|..+|.|++|.| +..+++.+| .. +++.+ ++.+|..+|.+++|.|+|++|
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~-pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIED-PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCC-CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 46888999999999999999999997 899999999 46 77776 899999999999999999977
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHH-------------hCCCCCCH-HHHHHHHH
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTK-------------LGDELCTL-DDCRGMIA 189 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-------------~g~~~ls~-~~~~~l~~ 189 (212)
.....+++..+|+.||.|++|+|+.+||.++|.. +|. .++. +++..|+.
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~-~l~~~~~~~~iiH 272 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGE-ALGVSDKLNAMIH 272 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcC-cccchhhHHHHHH
Confidence 2356778999999999999999999999999998 674 5666 66666663
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=1.7e-12 Score=82.46 Aligned_cols=62 Identities=35% Similarity=0.588 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHH----HHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD----CRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~----~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
.++.+|+.||.|++|+|+.+||..++..++. ..++.+ +..++..+|.|++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR-DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS-HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3789999999999999999999999999985 454544 5555999999999999999999886
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.8e-13 Score=105.26 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCC-------------C
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPA-------------C 143 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~-------------~ 143 (212)
..+.+-++.|+..|.|++|.++.+||..+|..-....+..-.|+.-+...|+|++|.|+++||.+. .
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 456778899999999999999999999999877653355667888899999999999999977110 1
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHH
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 206 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~ 206 (212)
..+-...|..+|.|+||+++.+|++.-+..-+. .....++..|+-..|.|+||+++++|.+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~-d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ-DHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCc-cHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 123346678889999999999999987776665 46788899999999999999999999765
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.8e-12 Score=102.64 Aligned_cols=132 Identities=26% Similarity=0.282 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCCh-------------
Q 028192 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACE------------- 144 (212)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~------------- 144 (212)
...++..++..+|.+++|.|+..|+...+...... ....++.+-|..+|.|.+|.|+|++......
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~-~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKK-YVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 45678999999999999999999998887665443 4556778888899999999999985421111
Q ss_pred ---------hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 145 ---------PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 145 ---------~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+.-|+.-|.|++|.++++||..+|-.--.++|.+-.|.+-+...|+|+||+|+++||+.=|-.
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 134467999999999999999999999876556888889999999999999999999999976643
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.36 E-value=4.6e-12 Score=84.99 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFD-ADHDG-KITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D-~d~~G-~I~~~El~~~l~~-----~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+..+|..|| .+++| +|+.+||+.+|+. +|. ..++++++++++.+|.|++|+|+|+||+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 357899999998 79999 5999999999999 785 689999999999999999999999999998853
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.27 E-value=6.2e-11 Score=84.53 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=98.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-----------CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC-
Q 028192 72 ADISLDMNYELVQACKLLDRD-----------NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC- 139 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d-----------~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~- 139 (212)
.-||..+|-++...|..+..+ ..-.+..+.+.. |..+.-+ + .-+++...+..||.|.++|+.|
T Consensus 20 TFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELken-p---fk~ri~e~FSeDG~GnlsfddFl 94 (189)
T KOG0038|consen 20 TFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKEN-P---FKRRICEVFSEDGRGNLSFDDFL 94 (189)
T ss_pred ccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcC-h---HHHHHHHHhccCCCCcccHHHHH
Confidence 346667777777777665421 112344544433 3344333 2 2345556677899999999966
Q ss_pred --------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHH----HHHHHHhcCCCCcceeHHHHHHH
Q 028192 140 --------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC----RGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 140 --------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~----~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
.....-.+..+|+.||-|+|++|...+|...+..+-...++++++ ++++..+|.|+||+|++.||..+
T Consensus 95 DmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 95 DMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred HHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 334455788999999999999999999999999985446899885 55678899999999999999998
Q ss_pred HHhCC
Q 028192 208 MELQR 212 (212)
Q Consensus 208 l~~~~ 212 (212)
+.+.|
T Consensus 175 i~raP 179 (189)
T KOG0038|consen 175 ILRAP 179 (189)
T ss_pred HHhCc
Confidence 87643
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.25 E-value=4.3e-11 Score=80.30 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=58.4
Q ss_pred hHHHHHHHhhcC-CC-CCccCHHHHHHHHHH---hCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 145 PELKETFDFFDA-DH-DGKITAEELFGVFTK---LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 145 ~~l~~~F~~~D~-d~-~G~I~~~El~~~l~~---~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+..+|..||. ++ +|+|+.+||+++|.. +|. .++++++.+|++.+|.|++|+|+|+||+.+|..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 467789999998 77 899999999999974 674 799999999999999999999999999998864
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=5.5e-11 Score=80.96 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=58.8
Q ss_pred hhHHHHHHHhhcC-CC-CCccCHHHHHHHHHH-----hCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDA-DH-DGKITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~-d~-~G~I~~~El~~~l~~-----~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+..+|..||. ++ +|+|+..||+.+|.. +|. .++++++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4578999999997 97 699999999999987 453 579999999999999999999999999998864
No 21
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=9.9e-11 Score=79.38 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=58.6
Q ss_pred hhHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFD-ADHDG-KITAEELFGVFTK-LGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D-~d~~G-~I~~~El~~~l~~-~g~---~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+.+.++|..|| .+++| .|+.+||+.+|+. +|. ...+.++++.|+..+|.|++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467899999997 99999 5999999999986 542 1358899999999999999999999999998864
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=1e-10 Score=79.45 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred hHHHHHHHhhc-CCCCC-ccCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 145 PELKETFDFFD-ADHDG-KITAEELFGVFTKL-G---DELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 145 ~~l~~~F~~~D-~d~~G-~I~~~El~~~l~~~-g---~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+..+|..|| .|++| +|+..||+.+|... + ....++.++.+|+..+|.|++|.|+|+||+.+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 46788999999 78998 59999999999873 2 12357889999999999999999999999998864
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.20 E-value=6.3e-11 Score=72.15 Aligned_cols=53 Identities=34% Similarity=0.626 Sum_probs=49.2
Q ss_pred CCCccCHHHHHHHHHHhCCCC-CCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 158 HDGKITAEELFGVFTKLGDEL-CTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~~~-ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
.+|.|+.+||+.+|..+|. . ++++++..|+..+|.|++|.|+|+||+.+|..+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHhC
Confidence 4799999999999988896 6 999999999999999999999999999999763
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.16 E-value=2e-10 Score=84.99 Aligned_cols=95 Identities=27% Similarity=0.535 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC----CHHH
Q 028192 116 QEEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELC----TLDD 183 (212)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~l----s~~~ 183 (212)
..++..+|..+|.+++|.|+-.++ ......++..++..+|.+++|.|+.+||..++...+.... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 356888999999999999987644 5567889999999999999999999999999998764222 3558
Q ss_pred HHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 184 CRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 184 ~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.+.|+.+|.|++|+|+..|+..+|..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999999875
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.16 E-value=1.6e-10 Score=73.36 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=55.1
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 148 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 148 ~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
+.+|..+|.+++|.|+.+|+..++..+| ++.+++..++..+|.+++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5789999999999999999999999987 3889999999999999999999999999875
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.15 E-value=2.2e-10 Score=78.33 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=59.1
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+..+|..+|.+++|.|+.+||..+|+..| ++.+++..|+..+|.+++|.|+|+||+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45788999999999999999999999999976 68899999999999999999999999998864
No 27
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.12 E-value=8.7e-11 Score=89.39 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHH
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKET 150 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~ 150 (212)
++.++-+...||.+.+|.|...||..+...+ ..++.+|..+|.|+.|.|+-.|+ .....+-+..+
T Consensus 93 ~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 93 IETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 4556666677888889999999998888654 47888899999999999887755 33455677788
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcc--eeHHHHHHHHH
Q 028192 151 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGF--VCFEDFSRMME 209 (212)
Q Consensus 151 F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~--I~~~eF~~~l~ 209 (212)
++.||..++|.|..++|.+.+..+.. +-+.|++.|.+.+|. |+|++|+.+.+
T Consensus 166 v~kyd~~~~g~i~FD~FI~ccv~L~~-------lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 166 VRKYDRFGGGRIDFDDFIQCCVVLQR-------LTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHhccccCCceeHHHHHHHHHHHHH-------HHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 88998877899999999988876652 556788888887775 78888887654
No 28
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.11 E-value=5.5e-10 Score=92.89 Aligned_cols=127 Identities=19% Similarity=0.278 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhcCCCCcccccCCC-------------------
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGRVGNSSC------------------- 139 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~------------------- 139 (212)
..|...|+.+|.+..|+|+...+..++..+ |+. +.=..+.. .....+.+|.+.|.+.
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~-LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLN-LPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCC-CcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 346788999999999999999999999865 332 22212211 2234455667777621
Q ss_pred -CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC---CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 140 -EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 140 -~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~---~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.-.....+..+|+.+|.|.+|.|+.+||++++.-++- ..+++.++.++.+.+|.|+||.|++.||++.++
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 2233346778999999999999999999999987631 268899999999999999999999999999876
No 29
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=4.2e-10 Score=75.58 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=58.4
Q ss_pred hhHHHHHHHhhcC--CCCCccCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDA--DHDGKITAEELFGVFTK-LGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~--d~~G~I~~~El~~~l~~-~g~---~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+.+..+|..||. +++|.|+..||..+++. +|. ...+.+++..|+..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4578899999999 89999999999999986 553 1235899999999999999999999999998864
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.09 E-value=7.6e-10 Score=70.13 Aligned_cols=66 Identities=35% Similarity=0.588 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDG 160 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G 160 (212)
+|+++|..+|.|++|+|+..||..++..++.. .....+.. .+..+|+.+|.+++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~D~d~dG 55 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD-MSDEESDE------------------------MIDQIFREFDTDGDG 55 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH-STHHHHHH------------------------HHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc-ccHHHHHH------------------------HHHHHHHHhCCCCcC
Confidence 47899999999999999999999999999875 44332222 456678888888888
Q ss_pred ccCHHHHHHHH
Q 028192 161 KITAEELFGVF 171 (212)
Q Consensus 161 ~I~~~El~~~l 171 (212)
.|+.+||.+++
T Consensus 56 ~i~~~Ef~~~~ 66 (66)
T PF13499_consen 56 RISFDEFLNFM 66 (66)
T ss_dssp SEEHHHHHHHH
T ss_pred CCcHHHHhccC
Confidence 88888888764
No 31
>PTZ00183 centrin; Provisional
Probab=99.08 E-value=1e-09 Score=81.36 Aligned_cols=94 Identities=21% Similarity=0.330 Sum_probs=80.2
Q ss_pred HHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028192 117 EEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 188 (212)
Q Consensus 117 ~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~ 188 (212)
.+++.+|..+|.+++|.|++.++ .......+..+|..+|.+++|.|+.+||..++...-......+.+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45777888999999999999866 2345678999999999999999999999998876522346778899999
Q ss_pred HHhcCCCCcceeHHHHHHHHHh
Q 028192 189 ALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 189 ~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.+|.+++|.|+++||..++..
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHH
Confidence 9999999999999999999864
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.05 E-value=1.3e-09 Score=73.30 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=57.1
Q ss_pred hhHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHhC----CCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDF-FDADHDG-KITAEELFGVFTKLG----DELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~-~D~d~~G-~I~~~El~~~l~~~g----~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...|..+|.. +|.+++| +|+.+||+.++.... .....+.++.++++.+|.|+||.|+|+||+.+|..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4578899999 6788876 999999999998862 12467889999999999999999999999998864
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.05 E-value=3.4e-10 Score=75.91 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hCCCCCCH-HHHHHHHHhhcCCCCcccccCCC
Q 028192 77 DMNYELVQACKLLDR-DNDGVVLRSELEALLIR-LGADPPTQ-EEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~~G~I~~~el~~~l~~-l~~~~~s~-~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
.-+..+..+|..||+ +++|+|+..||+.+|.. +|.. ++. .++..++..+|.|++|.|+|++|
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL-LKDVEGLEEKMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh-ccCHHHHHHHHHHhCCCCCCCCcHHHH
Confidence 457889999999999 99999999999999998 7754 555 66777777666666666666655
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.04 E-value=1.4e-09 Score=67.01 Aligned_cols=61 Identities=43% Similarity=0.717 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
+..+|..+|.+++|.|+.+|+..++..++. ..+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 578899999999999999999999999985 6899999999999999999999999999876
No 35
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.04 E-value=1.9e-09 Score=79.40 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=80.2
Q ss_pred HHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028192 117 EEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 188 (212)
Q Consensus 117 ~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~ 188 (212)
.+++..|..+|.+++|.|+..++ ......++..+|..+|. +.|.|+..+|..+|...-...-+++++...|
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 34666788899999999998854 55778899999999999 9999999999999987643356789999999
Q ss_pred HHhcCCCCcceeHHHHHHHHHh
Q 028192 189 ALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 189 ~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.+|.|++|+|++.+++.+|..
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHh
Confidence 9999999999999999998863
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=99.01 E-value=1.6e-09 Score=96.07 Aligned_cols=121 Identities=17% Similarity=0.322 Sum_probs=91.2
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH--hCCCCCCHHHHHHHHHhhcCCCCcccccC-----CC-CCCChhH---HHHHHHh
Q 028192 85 ACKLLDRDNDGVVLRSELEALLIR--LGADPPTQEEVKSMLSEVDREGDGRVGNS-----SC-EPACEPE---LKETFDF 153 (212)
Q Consensus 85 ~F~~~D~d~~G~I~~~el~~~l~~--l~~~~~s~~~~~~l~~~~d~~~~g~i~~~-----e~-~~~~~~~---l~~~F~~ 153 (212)
.|..+|++ .++..++...... ..+......++.+.|..+|.|++|.+ +. .. .....++ +..+|..
T Consensus 112 ~~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~ 187 (644)
T PLN02964 112 RISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAI 187 (644)
T ss_pred EEEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 45666665 5566666544422 12111223567778899999999876 22 11 1233333 8999999
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 154 FDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 154 ~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+|.|++|.|+.+||..+|..++. ..+++++.++|+.+|.|++|.|+++||..+|..
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999984 689999999999999999999999999999876
No 37
>PTZ00184 calmodulin; Provisional
Probab=99.00 E-value=3.8e-09 Score=77.32 Aligned_cols=94 Identities=22% Similarity=0.449 Sum_probs=78.5
Q ss_pred HHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028192 117 EEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 188 (212)
Q Consensus 117 ~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~ 188 (212)
..+...|..+|.+++|.|++.+| .....+.+..+|..+|.+++|.|+.+||..++..........+.+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 35667788899999999999866 2345668999999999999999999999999987532234667789999
Q ss_pred HHhcCCCCcceeHHHHHHHHHh
Q 028192 189 ALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 189 ~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+|.+++|.|+.++|..++..
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHH
Confidence 9999999999999999988853
No 38
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=1.8e-09 Score=75.99 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
......+..+|..+|.|+||+|+.+||..++ ++ ..+..+..+|..+|.|+||.|+++||..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3456789999999999999999999999887 33 3577789999999999999999999999983
No 39
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.98 E-value=1.3e-09 Score=73.14 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 77 ~~~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
.-+.++.++|..|| +|++| +|+..||+.+|+. +|.. .+..++..++..+|.|++|.|+|++|
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~-~~~~~v~~~i~~~D~n~dG~v~f~eF 73 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI-KEQEVVDKVMETLDSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC-CCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 34789999999998 79999 5999999999998 7876 78888888888888888888887766
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.94 E-value=2.5e-09 Score=73.03 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHh
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDF 153 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~ 153 (212)
++.+++.+++++|..+|.+++|.|+..||..+|+.++ ++..++..++ ..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~----------------------------~~ 52 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIW----------------------------NL 52 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHH----------------------------HH
Confidence 6779999999999999999999999999999998755 3444555554 44
Q ss_pred hcCCCCCccCHHHHHHHHHH
Q 028192 154 FDADHDGKITAEELFGVFTK 173 (212)
Q Consensus 154 ~D~d~~G~I~~~El~~~l~~ 173 (212)
+|.+++|.|+.+||..++..
T Consensus 53 ~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 53 ADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred hcCCCCCCcCHHHHHHHHHH
Confidence 55556666666666666654
No 41
>PF14658 EF-hand_9: EF-hand domain
Probab=98.93 E-value=6e-09 Score=65.00 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=57.7
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCC-cceeHHHHHHHHHh
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGD-GFVCFEDFSRMMEL 210 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~d-g~I~~~eF~~~l~~ 210 (212)
.+|..||.++.|.|...++..+|++++.....+.+++.+...+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999998656899999999999999987 99999999999975
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.92 E-value=4.8e-09 Score=70.43 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=56.6
Q ss_pred hhHHHHHHHhhcCC--CCCccCHHHHHHHHH-HhCCCCCC----HHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDAD--HDGKITAEELFGVFT-KLGDELCT----LDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d--~~G~I~~~El~~~l~-~~g~~~ls----~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
...+..+|..|+.. .+|+|+.+||+.+|. .+| +.++ ++++..+|..+|.|++|.|+|++|+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 34677899999866 479999999999997 455 3566 899999999999999999999999998864
No 43
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.90 E-value=2.2e-09 Score=80.61 Aligned_cols=75 Identities=28% Similarity=0.321 Sum_probs=66.4
Q ss_pred ccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 135 GNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 135 ~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.|.+|.......+..+|+.||.+.||+|+..||+.+|..+|. ..+.--+.+||..+|.|.||+|+|-||+-+++.
T Consensus 89 eF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 89 EFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 344666666778889999999999999999999999999996 678888999999999999999999999987753
No 44
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.87 E-value=8.5e-09 Score=78.53 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC-------------------CC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC-------------------EP 141 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~-------------------~~ 141 (212)
-...+|+.+|.+++|.|+..||..+|..+-.- ..++-+...|..+|.|++|.|+.+++ ..
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRG-TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 34568999999999999999998888766543 66777888899999999999998833 12
Q ss_pred CChhHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 028192 142 ACEPELKETFDFFDADHDGKITAEELFGVFTK 173 (212)
Q Consensus 142 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~ 173 (212)
...+....+|..+|.|+||.||.+||...+.+
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 24567788999999999999999999988754
No 45
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=2.5e-08 Score=72.45 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCCCCCCHHHHHHH
Q 028192 117 EEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTK-LGDELCTLDDCRGM 187 (212)
Q Consensus 117 ~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~~ls~~~~~~l 187 (212)
..++..|..++.+++|.|++.++ .....+++..+..-+|.++.|.|+.++|..++.. +|. .-+.+++..+
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE-RDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc-cCcHHHHHHH
Confidence 56788899999999999999866 3345678888999999999999999999999876 564 5699999999
Q ss_pred HHHhcCCCCcceeHHHHHHHHHh
Q 028192 188 IALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 188 ~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
|+.+|.|++|+|++.+|..++..
T Consensus 112 frl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHH
Confidence 99999999999999999988753
No 46
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.79 E-value=1.3e-08 Score=69.16 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCcccc
Q 028192 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGRVG 135 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~-----l~~~~~s~~~~~~l~~~~d~~~~g~i~ 135 (212)
.-+..++++|..+|. |+ +|.|+..||..+|.. +|.. ++..++..++..+|.+++|.|+
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~-~s~~ei~~~~~~~D~~~dg~I~ 69 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ-KDPMAVDKIMKDLDQNRDGKVN 69 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc-ccHHHHHHHHHHhCCCCCCcCc
Confidence 346789999999997 97 699999999999986 3433 4455455444444443333333
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.78 E-value=1.8e-08 Score=68.19 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhc-CCCCCc-ccHHHHHHHHHH-hCCC---CCCHHHHHHHHHhhcCCCCcccccC
Q 028192 78 MNYELVQACKLLD-RDNDGV-VLRSELEALLIR-LGAD---PPTQEEVKSMLSEVDREGDGRVGNS 137 (212)
Q Consensus 78 ~~~~l~~~F~~~D-~d~~G~-I~~~el~~~l~~-l~~~---~~s~~~~~~l~~~~d~~~~g~i~~~ 137 (212)
-+.+++++|..|| .+++|+ |+..||..+|+. +|.. .++..+++.++..+|.+++|.|+|+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~ 72 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQ 72 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHH
Confidence 3678999999997 999995 999999999975 5421 0344444444444444444444333
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.75 E-value=2.3e-08 Score=67.01 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR---LGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~---l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
+.+..+..+|.+||. ++ +|+|+..||+.+|.. +|.. ++..++..++..+|.|++|.|+|.+|
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k-~t~~ev~~m~~~~D~d~dG~Idf~EF 73 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK-LQDAEIAKLMEDLDRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcHHHH
Confidence 567889999999998 67 899999999999973 5765 78888888888877777777777666
No 49
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.73 E-value=3.1e-08 Score=67.18 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHh
Q 028192 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDF 153 (212)
Q Consensus 77 ~~~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~l-~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~ 153 (212)
.-+..+.++|..|| .|++| .|+..||+.+|... +.. +. ......++..+++.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~-~~------------------------~~~~~~~v~~i~~e 61 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDF-LS------------------------SQKDPMLVDKIMND 61 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHh-cc------------------------cccCHHHHHHHHHH
Confidence 34678999999999 78998 59999999999763 210 00 01123355555666
Q ss_pred hcCCCCCccCHHHHHHHHHHh
Q 028192 154 FDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 154 ~D~d~~G~I~~~El~~~l~~~ 174 (212)
+|.|++|.|+.+||..++..+
T Consensus 62 lD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 62 LDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred hCCCCCCCCCHHHHHHHHHHH
Confidence 666666666666666666554
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.71 E-value=2.7e-08 Score=66.69 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hCCC---CCCHHHHHHHHHhhcCCCCcccccCC
Q 028192 76 LDMNYELVQACKLLDR--DNDGVVLRSELEALLIR-LGAD---PPTQEEVKSMLSEVDREGDGRVGNSS 138 (212)
Q Consensus 76 ~~~~~~l~~~F~~~D~--d~~G~I~~~el~~~l~~-l~~~---~~s~~~~~~l~~~~d~~~~g~i~~~e 138 (212)
++++..++.+|..+|+ +++|.|+..||..+++. +|.. ..+..++..++..+|.+++|.|+|++
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~e 72 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQE 72 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHH
Confidence 3678899999999999 89999999999999976 4432 02345555555554444444444433
No 51
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.70 E-value=1.3e-07 Score=88.44 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=103.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC-CCCH-----HHHHHHHHhhcCCCCcccccCCC-----
Q 028192 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQ-----EEVKSMLSEVDREGDGRVGNSSC----- 139 (212)
Q Consensus 71 ~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~-~~s~-----~~~~~l~~~~d~~~~g~i~~~e~----- 139 (212)
....|++++.+|..+|..||++.+|.++..+|..||+++|.+ |.-+ .+++.++..+|.+.+|.|+..++
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 456788999999999999999999999999999999999987 1223 37999999999999999998744
Q ss_pred -----CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh----cCC----CCcceeHHHHHH
Q 028192 140 -----EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV----DKN----GDGFVCFEDFSR 206 (212)
Q Consensus 140 -----~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~----d~~----~dg~I~~~eF~~ 206 (212)
.-...+++..+|+.+|. +.-||+.+++.+. ++.++++-++..+ +.. -.+.|.|.+|++
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~--------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~ 2394 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN--------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVN 2394 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhc--------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHH
Confidence 22445699999999998 7789999998754 5777766655544 321 234599999998
Q ss_pred HHH
Q 028192 207 MME 209 (212)
Q Consensus 207 ~l~ 209 (212)
-+-
T Consensus 2395 sl~ 2397 (2399)
T KOG0040|consen 2395 SLF 2397 (2399)
T ss_pred HHh
Confidence 763
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.65 E-value=8.8e-08 Score=72.11 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCC----------CC
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCE----------PA 142 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~----------~~ 142 (212)
.|+..+|..+..+|+.+|.+.||+|+..||+.+|..||.. -+.--++.|+..+|.|.+|+|+|.+|. ..
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-QTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc-hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 5788999999999999999999999999999999999984 778889999999999999999998661 11
Q ss_pred ChhHHHHHHH--hhcCCCCCccCHHHHHHHHHHh
Q 028192 143 CEPELKETFD--FFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 143 ~~~~l~~~F~--~~D~d~~G~I~~~El~~~l~~~ 174 (212)
....+..+=+ .+|...-|+..+..|.++=-..
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~ 204 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEA 204 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHHHh
Confidence 1223333333 3687888888877777664443
No 53
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=7.9e-08 Score=69.44 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=53.4
Q ss_pred cCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 136 NSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 136 ~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
|..|......+++++|..+|.|+||+|+.++|+.++..+|. ..++++++.|+..+ .|-|+|--|+.++
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~elDaM~~Ea----~gPINft~FLTmf 90 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEELDAMMKEA----PGPINFTVFLTMF 90 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhC----CCCeeHHHHHHHH
Confidence 34456677889999999999999999999999999999996 58999888887654 3445555554443
No 54
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.63 E-value=4.7e-08 Score=61.75 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccC
Q 028192 83 VQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNS 137 (212)
Q Consensus 83 ~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~ 137 (212)
+++|..+|.+++|.|+..|+..++..+| .+..+++.++..+|.+++|.|+|.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ 53 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKE 53 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHH
Confidence 5789999999999999999999998765 345555555555554444444443
No 55
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.56 E-value=3.6e-07 Score=76.81 Aligned_cols=134 Identities=21% Similarity=0.307 Sum_probs=100.9
Q ss_pred cccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc----CCCCcccccCCC-----
Q 028192 69 DMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD----REGDGRVGNSSC----- 139 (212)
Q Consensus 69 ~~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d----~~~~g~i~~~e~----- 139 (212)
+...-|+.+....+.-.|..+|+|.+|.|+.++|...-... .+...+.++|..+. .-.+|+++|..|
T Consensus 267 q~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 267 QVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred hhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 33444566666667777999999999999999997665432 66778899998433 345788999855
Q ss_pred ---CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHH-------hCCCCCCHHH-HHHHHHHhcCCCCcceeHHHHHH
Q 028192 140 ---EPACEPELKETFDFFDADHDGKITAEELFGVFTK-------LGDELCTLDD-CRGMIALVDKNGDGFVCFEDFSR 206 (212)
Q Consensus 140 ---~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-------~g~~~ls~~~-~~~l~~~~d~~~dg~I~~~eF~~ 206 (212)
.......+...|+.+|.+++|.|+..|++-+.+. +|.+.++-++ +.+|+..+..-..++|++.+|..
T Consensus 343 A~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 343 AEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 3355567889999999999999999999876654 3544455444 56777787767789999999876
No 56
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.55 E-value=9.7e-08 Score=50.10 Aligned_cols=27 Identities=52% Similarity=0.699 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTK 173 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~ 173 (212)
++.+|+.||.|++|+|+.+||..+|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666665554
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=8.1e-07 Score=59.34 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHh-----CCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKL-----GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-----g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
...+..+|..|.. +.+.++..||+.+|..- +. .-.+..++++++.+|.|+||.|+|.||+.++.
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3467789999984 45799999999999762 32 45788899999999999999999999998875
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=73.17 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh---CCCCCCHHHHHHHHHhhcCCCCcccccCCCC-------CC------
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRL---GADPPTQEEVKSMLSEVDREGDGRVGNSSCE-------PA------ 142 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~-------~~------ 142 (212)
.+.++.+|.+.|-+.+|+|+..|+++.+..- .+. -+.++-+..|..+|.|++|.|.+++|. +.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfq-eameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQ-EAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHH-HHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 4578999999999999999999998776532 111 233455667888999999999999661 11
Q ss_pred ---------ChhHHHHHHHhhcCCCCCccCH---------HHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHH
Q 028192 143 ---------CEPELKETFDFFDADHDGKITA---------EELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDF 204 (212)
Q Consensus 143 ---------~~~~l~~~F~~~D~d~~G~I~~---------~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF 204 (212)
..++-...|..-+.+++|..+. +||.-+|-.-.-..+-...+.+|+..+|.|+|.+++..+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 1112223454555666666555 8888777553222356667889999999999999999999
Q ss_pred HHH
Q 028192 205 SRM 207 (212)
Q Consensus 205 ~~~ 207 (212)
+..
T Consensus 259 isl 261 (362)
T KOG4251|consen 259 ISL 261 (362)
T ss_pred hcC
Confidence 864
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.50 E-value=2.3e-07 Score=56.89 Aligned_cols=57 Identities=39% Similarity=0.686 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
+..+|..+|.+++|.|+..|+..++..++.. .+...+..++..++.+++|.|++.+|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ef 58 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG-LSEEEIDEMIREVDKDGDGKIDFEEF 58 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCeEeHHHH
Confidence 5678999999999999999999999998875 77777777777776666666665543
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.48 E-value=4e-07 Score=61.11 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhh
Q 028192 77 DMNYELVQACKL-LDRDNDG-VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFF 154 (212)
Q Consensus 77 ~~~~~l~~~F~~-~D~d~~G-~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~ 154 (212)
..+..|..+|.. +|.+++| .|+..||+.++...... ++ . ......++..+++.+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~---------~~----~-----------~~~~~~~~~~ll~~~ 61 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS---------FT----K-----------NQKDPGVLDRMMKKL 61 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH---------hh----c-----------CCCCHHHHHHHHHHc
Confidence 457889999999 7788876 99999999999765211 00 0 111234555566666
Q ss_pred cCCCCCccCHHHHHHHHHHh
Q 028192 155 DADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 155 D~d~~G~I~~~El~~~l~~~ 174 (212)
|.|++|.|+.+||..++..+
T Consensus 62 D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 62 DLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CCCCCCcCcHHHHHHHHHHH
Confidence 66666666666666665544
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.47 E-value=3.2e-07 Score=64.55 Aligned_cols=64 Identities=28% Similarity=0.330 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhh
Q 028192 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFF 154 (212)
Q Consensus 75 t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~ 154 (212)
.......+...|..+|.|++|+|+..||..++ ++ .. ...+...|..+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~----------------------------e~~~~~f~~~~ 89 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PN----------------------------EHCIKPFFESC 89 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---ch----------------------------HHHHHHHHHHH
Confidence 34667788899999999999999999998665 21 22 23445566777
Q ss_pred cCCCCCccCHHHHHHHH
Q 028192 155 DADHDGKITAEELFGVF 171 (212)
Q Consensus 155 D~d~~G~I~~~El~~~l 171 (212)
|.|++|.||.+||...|
T Consensus 90 D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 90 DLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCCCCCCCCHHHHHHHH
Confidence 77788888888887777
No 62
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.45 E-value=5.5e-07 Score=68.56 Aligned_cols=92 Identities=26% Similarity=0.332 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCCc-ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--------C-CCC--h----hH
Q 028192 83 VQACKLLDRDNDGV-VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC--------E-PAC--E----PE 146 (212)
Q Consensus 83 ~~~F~~~D~d~~G~-I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~--------~-~~~--~----~~ 146 (212)
.+++..++.+++|. |+.++|...|..+........-++-.|..+|.+++|.|+.+++ . ... . ..
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 46788889988888 9999999999887765233347888999999999999998844 1 111 2 24
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
+..+|..+|.|+||+|+.+|+..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 5568999999999999999999998654
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.42 E-value=3.4e-07 Score=48.89 Aligned_cols=30 Identities=47% Similarity=0.764 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHH-HhC
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFT-KLG 175 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~-~~g 175 (212)
+++.+|+.||.|++|+|+.+||..+|. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 576
No 64
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.41 E-value=4.4e-07 Score=47.56 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRL 109 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l 109 (212)
+++++|+.+|+|++|+|+.+||..+|+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57889999999999999999999999764
No 65
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.40 E-value=2e-06 Score=71.54 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHH
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKET 150 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~ 150 (212)
.+....+|..+|.|.+|.++..||...+. ..+.++-++|..+|.+.||.|+.+|. -....+++...
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~ 123 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKF 123 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHH
Confidence 34456778889999999999999998886 45667888899999999999988743 33566788888
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHH------HhcCCCCcceeHHHHHHH
Q 028192 151 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIA------LVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 151 F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~------~~d~~~dg~I~~~eF~~~ 207 (212)
|+..|+++++.|+.+|++..+.-. +++.++.++. .+|..++..|. ++|...
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~-----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLY-----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcC-----ChhHHHHHHHhhhhheEEEccccccCC-cchHHH
Confidence 999999999999999999887432 3444554432 24566666666 555543
No 66
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.39 E-value=6.7e-07 Score=74.73 Aligned_cols=125 Identities=11% Similarity=0.210 Sum_probs=92.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCC---HHHHHHHHHhhcCCCCcccccCCCCC-----CChhHHHHHHHhh
Q 028192 83 VQACKLLDRDNDGVVLRSELEALLIRLGADPPT---QEEVKSMLSEVDREGDGRVGNSSCEP-----ACEPELKETFDFF 154 (212)
Q Consensus 83 ~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s---~~~~~~l~~~~d~~~~g~i~~~e~~~-----~~~~~l~~~F~~~ 154 (212)
..-|..+|+..+|.|+..+|..+|-..-.. .+ ...++++-..++.+ +..|+++||.. ...+.+..|...|
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~-n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy 398 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAGV-NSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFY 398 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHccc-chHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344888999888999999998887666432 22 22466666777665 44588886622 3344555555555
Q ss_pred cCCCCCccCHHHHHHHHHHh-CCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 155 DADHDGKITAEELFGVFTKL-GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 155 D~d~~G~I~~~El~~~l~~~-g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
- .-.+-|+..+|+++.... |. .+++..++-+|..+|.|+||.|+++||+.+|+++
T Consensus 399 ~-~Ag~~i~~~~f~raa~~vtGv-eLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 399 H-MAGASIDEKTFQRAAKVVTGV-ELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred H-HcCCCCCHHHHHHHHHHhcCc-ccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 3 245689999999999875 64 6898889999999999999999999999999864
No 67
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.36 E-value=1.6e-06 Score=61.67 Aligned_cols=70 Identities=27% Similarity=0.364 Sum_probs=60.0
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC--CCcceeHHHHHHHHHh
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN--GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~--~dg~I~~~eF~~~l~~ 210 (212)
.....++++++|..||..+||.|+..+.-.+|+++|. +.++.++.+.+.....+ +--+|+|++|+-++.+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 3445689999999999999999999999999999996 78999999999888766 3457899998877753
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.33 E-value=9e-07 Score=47.21 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HhC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLI-RLG 110 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~-~l~ 110 (212)
+|+.+|..+|.|++|+|+.+||..+|. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 675
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.2e-06 Score=73.36 Aligned_cols=125 Identities=15% Similarity=0.239 Sum_probs=85.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh------CCC---C------CCHHHHH-HHHHhhcCCCCcccccCCCC----C
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIRL------GAD---P------PTQEEVK-SMLSEVDREGDGRVGNSSCE----P 141 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~l------~~~---~------~s~~~~~-~l~~~~d~~~~g~i~~~e~~----~ 141 (212)
++-+|+.||.||||.|+.+||....+-. |.. . ....... .+...|..++++++++++|. .
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4567899999999999999997776422 210 0 0001111 23334678999999999773 3
Q ss_pred CChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHH----HHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 142 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD----CRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 142 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~----~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
...+-+..-|..+|+..+|.|+..+|..+|-.... .+.+. ..++-+.++.+ +..|+++||..|.+
T Consensus 315 Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~--~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 315 LQEEILELEFERFDKGDSGAISEVDFAELLLAYAG--VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcc--cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 44556677899999999999999999999988753 33333 34444555443 55699999988764
No 70
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.24 E-value=1e-06 Score=53.34 Aligned_cols=51 Identities=33% Similarity=0.577 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHH
Q 028192 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFT 172 (212)
Q Consensus 94 ~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~ 172 (212)
+|.|+.++|..+|..+|...++..+ +..+|..+|.+++|+|+.+||..+|.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e----------------------------~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEE----------------------------VDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHH----------------------------HHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHH----------------------------HHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 6899999999999777763144444 45555555666666666666666554
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.24 E-value=1.2e-06 Score=70.63 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCCCcccccCCC---------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHH
Q 028192 116 QEEVKSMLSEVDREGDGRVGNSSC---------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 186 (212)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~i~~~e~---------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~ 186 (212)
.+.+..+|..||.+++|.++|.+. .....+.++.+|+.|+.+.||.++.++|..+|+... ++.+-.+--
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~ 335 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPV 335 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeeccc
Confidence 367788999999999999999854 335667899999999999999999999999999864 245555677
Q ss_pred HHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 187 MIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 187 l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
+|...+...+|+|+|.+|..++...
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhC
Confidence 8999988889999999999998654
No 72
>PF14658 EF-hand_9: EF-hand domain
Probab=98.22 E-value=1.6e-06 Score=54.11 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=48.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-cccccCCC
Q 028192 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGD-GRVGNSSC 139 (212)
Q Consensus 85 ~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~-g~i~~~e~ 139 (212)
+|..||.++.|.|...++..+|++++...+.+.+++.+...+|.++. |.|+|+.|
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F 58 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTF 58 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHH
Confidence 68999999999999999999999999833889999999999988876 77776654
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.22 E-value=8.7e-06 Score=56.13 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=55.4
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
....+..+|...|. ++|+|+.++.+.+|..-| ++.+.+..|+...|.|++|+++++||+-.|.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 34578889999985 689999999999999887 7999999999999999999999999998764
No 74
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.19 E-value=3.1e-06 Score=56.70 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHH-hCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHh
Q 028192 77 DMNYELVQACKLLDRD--NDGVVLRSELEALLIR-LGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDF 153 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d--~~G~I~~~el~~~l~~-l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~ 153 (212)
.-+..+...|..++.. .+|.|+..||+.+|.. ++.. ++ ......++..+|..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~-~t------------------------~~~~~~~v~~i~~~ 59 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF-LK------------------------KEKNQKAIDKIFED 59 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh-hc------------------------cCCCHHHHHHHHHH
Confidence 4477899999999865 4799999999999963 3321 22 11234456666666
Q ss_pred hcCCCCCccCHHHHHHHHHHh
Q 028192 154 FDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 154 ~D~d~~G~I~~~El~~~l~~~ 174 (212)
+|.+++|.|+.+||..++..+
T Consensus 60 ~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 60 LDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cCCCCCCcCcHHHHHHHHHHH
Confidence 666677777777776666554
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.17 E-value=2e-05 Score=70.26 Aligned_cols=131 Identities=15% Similarity=0.264 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC------CCCChhHHHHH
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC------EPACEPELKET 150 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~------~~~~~~~l~~~ 150 (212)
+....+..+|...|++.+|.++..+...++..++.. +....+..+|...+..+++++.+.++ ..... ++..+
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp-ev~~~ 210 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP-EVYFL 210 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc-hHHHH
Confidence 455678899999999999999999999999999887 88899999999998888888887744 22233 88888
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcCC----CCcceeHHHHHHHHHh
Q 028192 151 FDFFDADHDGKITAEELFGVFTKLG-DELCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 151 F~~~D~d~~G~I~~~El~~~l~~~g-~~~ls~~~~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 210 (212)
|..+-.+ .++++.++|..+|...+ .++++.+.+++|+..+... ..+.++++.|..||..
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 9888765 89999999999999874 4589999999999888544 4566999999999864
No 76
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.13 E-value=7.7e-06 Score=63.74 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCC-----------C-----C
Q 028192 81 ELVQACKLLDRD-NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEP-----------A-----C 143 (212)
Q Consensus 81 ~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~-----------~-----~ 143 (212)
.++..+-+.|.. .+-.++..||..+|..-.........++.++..+|+|++..++-.+|-. . .
T Consensus 199 nlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnw 278 (362)
T KOG4251|consen 199 NLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNW 278 (362)
T ss_pred hhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHH
Confidence 344444455543 2445677899888875433224456788999999999999998876611 0 1
Q ss_pred h-hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHH
Q 028192 144 E-PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 144 ~-~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
. ...++-=+.+|.+.+|.+|.+||..++....+ .+.-.++..++...|.|++.+++.++.+..
T Consensus 279 vkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~-~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 279 VKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNF-RLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHhhcCCccceeHHHHHhhcCchhh-hhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 1 12223336789999999999999999887775 677788999999999999999999988754
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.08 E-value=9.5e-06 Score=68.69 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.......+..+|+.||.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 344566888999999999999999999941 577999999999999999999998764
No 78
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.07 E-value=3.8e-05 Score=66.84 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=97.0
Q ss_pred ccccccccccccccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC-Ccc---
Q 028192 58 SVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREG-DGR--- 133 (212)
Q Consensus 58 ~~~p~~~~~~~~~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~-~g~--- 133 (212)
.++..+.+-+......+.+.-+..|.++|...|.|+||.++..|+..+-..--..++...++..+-...+..- +|.
T Consensus 173 aVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~ 252 (625)
T KOG1707|consen 173 AVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYER 252 (625)
T ss_pred eeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhc
Confidence 4445555566777777888999999999999999999999999998876644333355544444333322111 111
Q ss_pred -cccC--------------------------------------------------CCCCCChhHHHHHHHhhcCCCCCcc
Q 028192 134 -VGNS--------------------------------------------------SCEPACEPELKETFDFFDADHDGKI 162 (212)
Q Consensus 134 -i~~~--------------------------------------------------e~~~~~~~~l~~~F~~~D~d~~G~I 162 (212)
++.. |....-.+-+..+|..||.|+||-+
T Consensus 253 ~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L 332 (625)
T KOG1707|consen 253 GLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGAL 332 (625)
T ss_pred cccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCc
Confidence 1111 1122334678899999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 163 TAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 163 ~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
..+||..++..++.......-- ....-.+..|.++|.-|+..+.
T Consensus 333 ~p~El~~LF~~~P~~pW~~~~~---~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 333 SPEELKDLFSTAPGSPWTSSPY---KDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CHHHHHHHhhhCCCCCCCCCcc---cccceecccceeehhhHHHHHH
Confidence 9999999999986422110000 0011133678899988887653
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.01 E-value=6.9e-06 Score=41.44 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=15.2
Q ss_pred HHHHHhhcCCCCCccCHHHHHHH
Q 028192 148 KETFDFFDADHDGKITAEELFGV 170 (212)
Q Consensus 148 ~~~F~~~D~d~~G~I~~~El~~~ 170 (212)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666667777777776666664
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.96 E-value=7.2e-06 Score=56.56 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
++++|...+..+|..+|. ++|.|+..+...++...+ ++...+..+|...|.+++|.++++||
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHH
Confidence 556889999999999985 689999999999998776 44566666666655555555554444
No 81
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.93 E-value=9.2e-05 Score=63.17 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhcCCCCcccccCCC------CCCChhHHHH
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGRVGNSSC------EPACEPELKE 149 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~------~~~~~~~l~~ 149 (212)
+++..+--.|...+.++.-+++.++|....-.+ +........++.+-...|...||.|+|+|| ...+......
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~ 112 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEV 112 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHH
Confidence 344444444455577888899999996654433 333244555666666678888999999977 4455667889
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhC
Q 028192 150 TFDFFDADHDGKITAEELFGVFTKLG 175 (212)
Q Consensus 150 ~F~~~D~d~~G~I~~~El~~~l~~~g 175 (212)
+|+.||+.++|.++.+++.+++....
T Consensus 113 aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 113 AFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHhcccCCCceehHHHHHHHhccc
Confidence 99999999999999999999998753
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.90 E-value=5.9e-05 Score=44.50 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 162 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 162 I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
++..|++.+|+.+.. .++++-+..+|+.+|.+++|++..+||+.|++.
T Consensus 2 msf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678999999999997 699999999999999999999999999999864
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.89 E-value=5.1e-05 Score=50.11 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCC----CCcceeHHHHHHHHHh
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~-~ls~~~~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 210 (212)
++..+|..|-. +.+.|+.++|..+|.....+ .++.+++..+|..+..+ ..+.+++++|..||..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 47789999965 78999999999999887544 68999999999998655 4789999999999974
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.86 E-value=2.2e-05 Score=39.58 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALL 106 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l 106 (212)
|+.+|..+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 85
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.81 E-value=5.1e-05 Score=71.85 Aligned_cols=69 Identities=25% Similarity=0.504 Sum_probs=60.8
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC-CCHH-----HHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDEL-CTLD-----DCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~-ls~~-----~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
...++..+|++||.+++|.++..+|+-.|+.+|+.. +.++ ++++++..+|++.+|+|+..+|+.||-.+
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 345777899999999999999999999999999853 4444 79999999999999999999999999764
No 86
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.81 E-value=1e-05 Score=56.80 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHH
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
......+...|..+|.|+||.|+..||..+...+. ..+..+..++...|.|+||.|++.||..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34456788889999999999999999998876552 35556788999999999999999999764
No 87
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.79 E-value=0.00013 Score=61.76 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCC-CCCC-------------HHHHHHHHHhhcCCCCcccccCCC--------
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIRLGA-DPPT-------------QEEVKSMLSEVDREGDGRVGNSSC-------- 139 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~l~~-~~~s-------------~~~~~~l~~~~d~~~~g~i~~~e~-------- 139 (212)
+.+++..++..+.|+|...+|...|..+-. +++. .-.++++|-.++..+.|+|++.+.
T Consensus 176 ~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~ 255 (493)
T KOG2562|consen 176 LEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDA 255 (493)
T ss_pred HHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHH
Confidence 445566777777777777777777665522 1100 112456666678888888887621
Q ss_pred --------------CCCChhHHHHH---HHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh----cCCCCcc
Q 028192 140 --------------EPACEPELKET---FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV----DKNGDGF 198 (212)
Q Consensus 140 --------------~~~~~~~l~~~---F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~----d~~~dg~ 198 (212)
.....+.+..+ |..+|.|.+|.|+.++|...- ...++.--++.||..+ -.-.+|+
T Consensus 256 l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~----d~tlt~~ivdRIFs~v~r~~~~~~eGr 331 (493)
T KOG2562|consen 256 LLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG----DHTLTERIVDRIFSQVPRGFTVKVEGR 331 (493)
T ss_pred HHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh----ccchhhHHHHHHHhhccccceeeecCc
Confidence 22333444444 888899999999999998664 3456777888899833 3446899
Q ss_pred eeHHHHHHHHHh
Q 028192 199 VCFEDFSRMMEL 210 (212)
Q Consensus 199 I~~~eF~~~l~~ 210 (212)
++|++|+.++..
T Consensus 332 mdykdFv~FilA 343 (493)
T KOG2562|consen 332 MDYKDFVDFILA 343 (493)
T ss_pred ccHHHHHHHHHH
Confidence 999999998853
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0005 Score=61.62 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=54.5
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
-.+..+|..+|+...|+++-..-+.+|..-+ ++...+..|....|.|+||+++-+||+-.|
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 3566889999999999999999999987666 688889999999999999999999998765
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.62 E-value=9e-05 Score=62.84 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
.....+..+|..+|.+++|.|++++|.. ...+|..+|.|++|.|+.+||.+++...
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-----~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-----SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-----HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6778999999999999999999998842 6789999999999999999999998754
No 90
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.61 E-value=0.00019 Score=61.61 Aligned_cols=66 Identities=30% Similarity=0.408 Sum_probs=57.2
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC--CCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDE--LCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~--~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
...++++.|...| +++|+|+..|+..++...+.. ....+++++++...+.|.+|+|+|++|+..+.
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 3457788999999 999999999999999987631 24589999999999999999999999999654
No 91
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.60 E-value=7.9e-05 Score=62.76 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC---CCCHHHHHHHHHhhcCCCCcccccCC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGRVGNSS 138 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~---~~s~~~~~~l~~~~d~~~~g~i~~~e 138 (212)
.|..+|+.+|.|++|.|+.+||..+..-++-. +.+..++.++...+|-|+||.|+++|
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNE 608 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNE 608 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHH
Confidence 35667888888888888888888877665421 25555666666666666666655543
No 92
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.60 E-value=0.00023 Score=47.57 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcC
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDA 156 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~ 156 (212)
.-+..+..+|..|-.+ .+.++..||+.+|..- +..++. .......+..+++..|.
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~E---------lp~~l~---------------~~~d~~~vd~im~~LD~ 59 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKE---------FSEFLK---------------NQNDPMAVDKIMKDLDD 59 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHH---------hHHHHc---------------CCCCHHHHHHHHHHhCC
Confidence 4467888999999854 5699999999998632 111110 11123345555555666
Q ss_pred CCCCccCHHHHHHHHHHh
Q 028192 157 DHDGKITAEELFGVFTKL 174 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~~ 174 (212)
|+||.|+..||..++-.+
T Consensus 60 n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 60 CRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCCCcCcHHHHHHHHHHH
Confidence 666666666665555443
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.60 E-value=0.0001 Score=63.23 Aligned_cols=70 Identities=27% Similarity=0.324 Sum_probs=61.2
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhhcCCCCcccccCCCC
Q 028192 70 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEVDREGDGRVGNSSCE 140 (212)
Q Consensus 70 ~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~--~~s~~~~~~l~~~~d~~~~g~i~~~e~~ 140 (212)
+..+||++|+.++++.|..+| +++|+|+..|+..++...+.. ....++++.++...+.|.+|.|+|++|.
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~ 80 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFV 80 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHH
Confidence 456789999999999999999 999999999999999988752 1347899999999999999999999773
No 94
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00027 Score=48.84 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=46.8
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCC---------CCCCHHHHHHHHH----HhcCCCCcceeHHHHHHH
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKLGD---------ELCTLDDCRGMIA----LVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~g~---------~~ls~~~~~~l~~----~~d~~~dg~I~~~eF~~~ 207 (212)
..|...|.|++|+|+--||..++..... +..++.+++.|+. .-|.|+||.|+|.||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5688999999999999999999976421 2356677666654 457889999999999864
No 95
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.48 E-value=0.00011 Score=62.66 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCC-----CCCHHHHHHHHHhhcCCCCcccccCCC----CCCChhHHHHHHHh
Q 028192 83 VQACKLLDRDNDGVVLRSELEALLIRLGAD-----PPTQEEVKSMLSEVDREGDGRVGNSSC----EPACEPELKETFDF 153 (212)
Q Consensus 83 ~~~F~~~D~d~~G~I~~~el~~~l~~l~~~-----~~s~~~~~~l~~~~d~~~~g~i~~~e~----~~~~~~~l~~~F~~ 153 (212)
..+|+.||+.++|.++.+++.++.....+. ....+.++..|.. +....++|.+| .....+....+|+.
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~~~~E~~~qafr~ 187 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHEFQLEHAEQAFRE 187 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544321 0112222222211 11222344333 22344567789999
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHH-HhcCCCCcceeHHHHHH
Q 028192 154 FDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIA-LVDKNGDGFVCFEDFSR 206 (212)
Q Consensus 154 ~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~-~~d~~~dg~I~~~eF~~ 206 (212)
.|..++|+|+.=+|..++..... ++....+++.+- ....+...+++|-.|..
T Consensus 188 ~d~~~ng~is~Ldfq~imvt~~~-h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 188 KDKAKNGFISVLDFQDIMVTIRI-HLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred hcccCCCeeeeechHhhhhhhhh-hcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 99999999999999999988875 455555555444 44444455677666543
No 96
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.43 E-value=0.00039 Score=50.11 Aligned_cols=91 Identities=19% Similarity=0.335 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC---------CCCChhHHH----HH
Q 028192 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC---------EPACEPELK----ET 150 (212)
Q Consensus 84 ~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~---------~~~~~~~l~----~~ 150 (212)
++...|..||.|.++..+|..++.-+.-..+.+-.+.-.|..+|-|+++.|.-+.. .....++.. .+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 44566678999999999999998766542244445556677889999988875522 233344443 45
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHh
Q 028192 151 FDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 151 F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
.+..|.|+||.|+..||.+++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 666799999999999999988654
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.37 E-value=0.0075 Score=44.97 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc---CCCCccc---------------------
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD---REGDGRV--------------------- 134 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d---~~~~g~i--------------------- 134 (212)
...|++...-+|+|+||.|..-|-..-++++|+. +.-..+..++-.+. ....+.+
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~-~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFG-ILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCC-HHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 3457777888999999999999999999999986 43333333222111 0011111
Q ss_pred -ccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC------CCCCHHHHHHHHHHhcCCCCcceeHHHHHHH
Q 028192 135 -GNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD------ELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 135 -~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~------~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
.|+.-.....+.+.++|..|+..+.+.||..|+.++++.-.. -..+.-|..-+...+ .+.+|.|.-+.-..+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 011112234568999999999988899999999999987321 012223333333333 678899988876554
Q ss_pred H
Q 028192 208 M 208 (212)
Q Consensus 208 l 208 (212)
+
T Consensus 164 Y 164 (174)
T PF05042_consen 164 Y 164 (174)
T ss_pred c
Confidence 3
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.10 E-value=0.00076 Score=33.90 Aligned_cols=26 Identities=50% Similarity=0.779 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHH
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFT 172 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~ 172 (212)
++.+|..+|.+++|.|+..||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666665554
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.00 E-value=0.00085 Score=54.60 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC-------CCCChhHHHHHH
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC-------EPACEPELKETF 151 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~-------~~~~~~~l~~~F 151 (212)
-..+...|.+||..++|.++..|....|.-+-..+.+...++-.|..|+.+.||.+.-.++ .+...-.+...|
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf 337 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccc
Confidence 4567889999999999999999988888666444588899999999999999998876533 334444566789
Q ss_pred HhhcCCCCCccCHHHHHHHHHHhC
Q 028192 152 DFFDADHDGKITAEELFGVFTKLG 175 (212)
Q Consensus 152 ~~~D~d~~G~I~~~El~~~l~~~g 175 (212)
..+++..+|+|+.++|+.++...+
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCc
Confidence 999999999999999999987655
No 100
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.89 E-value=0.0009 Score=39.51 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCccc
Q 028192 97 VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRV 134 (212)
Q Consensus 97 I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i 134 (212)
++..|++.+|+.+++. +.+..+..+|..+|.+++|.+
T Consensus 2 msf~Evk~lLk~~NI~-~~~~yA~~LFq~~D~s~~g~L 38 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIE-MDDEYARQLFQECDKSQSGRL 38 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEB
T ss_pred CCHHHHHHHHHHHccC-cCHHHHHHHHHHhcccCCCCc
Confidence 5667777777777775 655555555555544444333
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.83 E-value=0.0017 Score=32.51 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIR 108 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~ 108 (212)
+++.+|..+|.+++|.|+..||..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3677899999999999999999998864
No 102
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.58 E-value=0.005 Score=50.55 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 139 CEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 139 ~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.......+..+|..+|.+.||.|+..||+.+-. .-.+.-++.+|...|...||.|+-.||+.++..
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4556677888888888888888888888876632 235566788888888888888888888877653
No 103
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.43 E-value=0.011 Score=41.46 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCC------CCCChhHHHHHHHhhcCCCCCccCHHHHHH
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSC------EPACEPELKETFDFFDADHDGKITAEELFG 169 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~ 169 (212)
.-...+...|..+|.|+||.|+-.|. ......-+..-|...|.|+||.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 44567788888999999999888765 245555678888999999999999988753
No 104
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0078 Score=51.76 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=59.2
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
-....+++...|+.+..|-.|+|+-.--++++..-. +..+|+..|++..|.|.||.+++.||+..|.
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 444567888999999999999999999999987655 7899999999999999999999999998774
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.14 E-value=0.028 Score=41.95 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 179 CTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 179 ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
..++.+++||..++..+.+.+++.|..++++.++
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 6667799999999988888999999999998764
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.68 E-value=0.027 Score=52.04 Aligned_cols=98 Identities=19% Similarity=0.123 Sum_probs=77.1
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCH-----HHHHHHHHhhcCCCCcccccCCC-----
Q 028192 70 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ-----EEVKSMLSEVDREGDGRVGNSSC----- 139 (212)
Q Consensus 70 ~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~-----~~~~~l~~~~d~~~~g~i~~~e~----- 139 (212)
.....++.+..+|+..|+.+++...|.++.+++..+|-.+|.+ .-. .++..++...|.+..|.++|.+|
T Consensus 737 ~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~-~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 737 DSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYN-TEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred cccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcc-cchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 3555677888999999999999989999999999999999986 442 34555666667777788888855
Q ss_pred ----CCCChhHHHHHHHhhcCCCCCccCHHHHHH
Q 028192 140 ----EPACEPELKETFDFFDADHDGKITAEELFG 169 (212)
Q Consensus 140 ----~~~~~~~l~~~F~~~D~d~~G~I~~~El~~ 169 (212)
.......+..+|+.+-+++. +|..+||..
T Consensus 816 R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 816 REYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 33455678888998877666 788888887
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.031 Score=48.24 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
-.+|.++.+.+...|+.+..|..|+|+-.--++++..-. +...++..||...|.+.||.+++.||
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EF 287 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEF 287 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHH
Confidence 356788888888888888888888888776666665443 44455555555555555555555544
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.24 E-value=0.13 Score=38.03 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=47.8
Q ss_pred HHHHHhh---cCCCCCccCHHHHHHHHHHhCC--CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 148 KETFDFF---DADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 148 ~~~F~~~---D~d~~G~I~~~El~~~l~~~g~--~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.+|..| -......|+...|..+|+.++. ..++..+++-+|..+-..+..+|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4555555 3556678999999999999753 3589999999999986566677999999999863
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.048 Score=49.46 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCC
Q 028192 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSS 138 (212)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e 138 (212)
....+.++|+.+|+...|+++-..-+.+|-..+ ++...+..++..-|.|+||+++-+|
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dE 250 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADE 250 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHH
Confidence 345678899999999999999988887775554 5556666666666666666665543
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=94.99 E-value=0.33 Score=43.66 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=49.7
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcC-------CCCcceeHHHHHHHHHh
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDK-------NGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~-~ls~~~~~~l~~~~d~-------~~dg~I~~~eF~~~l~~ 210 (212)
...++..+|..|-.++ +.|+.++|..+|.....+ ..+.+++..|+..+-. ...+.++++.|..||..
T Consensus 36 ~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 5568888888886444 689999999999998543 4777888887665411 12345899999999974
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.93 E-value=0.019 Score=46.93 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+..-|..+|.|.++.|...|++.+=+-+-...-...-...+++..|.|+|-+|+++||..+|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 56778999999999999999988765554322234556778999999999999999999998853
No 112
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.073 Score=37.00 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=28.5
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 028192 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG 110 (212)
Q Consensus 71 ~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~ 110 (212)
..++|+++++ ...|...|-|++|.|+--|+..++....
T Consensus 60 ~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H 97 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTH 97 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHh
Confidence 4456666654 2348889999999999999999887653
No 113
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.72 E-value=0.017 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=40.7
Q ss_pred CChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCC-------CcceeHHHHHHH
Q 028192 142 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG-------DGFVCFEDFSRM 207 (212)
Q Consensus 142 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~-------dg~I~~~eF~~~ 207 (212)
.+.+.+..+|+.+ .++.++||.+||++.| ++++++.++..+..-. .|.++|..|++-
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l--------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL--------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc--------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3567899999999 6788999999999885 3334566666553222 367999998754
No 114
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.61 E-value=0.062 Score=51.74 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
..|+.||+||.|.|+..+|..++..-. +.+..+++-++.-+..|.+..++|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 468899999999999999999997665 57889999999999999999999999998653
No 115
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.60 E-value=0.11 Score=42.39 Aligned_cols=61 Identities=33% Similarity=0.434 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHH----hCCCCCCHHH-----------HHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 148 KETFDFFDADHDGKITAEELFGVFTK----LGDELCTLDD-----------CRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 148 ~~~F~~~D~d~~G~I~~~El~~~l~~----~g~~~ls~~~-----------~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
+.-|...|.|+||+++-.||..++.. +..+.-.+++ -+.+++.+|.|.|..|+.+||++--
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 35578899999999999999988865 2222112222 2335788999999999999998754
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.38 E-value=0.49 Score=31.63 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=43.4
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHh-------CCC---CCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKL-------GDE---LCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-------g~~---~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
.++++.+|..+ .|.+|.|+...|..+|..+ |.. .-.+..+..+|... ...-.|+.++|+.+|+.-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 36789999999 5889999999999998762 210 12666778888876 356679999999999864
No 117
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.12 E-value=0.79 Score=42.67 Aligned_cols=117 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc--CCCCcccccCCC----------CCCChhHHHHHHHhhcCC
Q 028192 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD--REGDGRVGNSSC----------EPACEPELKETFDFFDAD 157 (212)
Q Consensus 90 D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d--~~~~g~i~~~e~----------~~~~~~~l~~~F~~~D~d 157 (212)
..+..|.|....+...+.+- ..+..++..+..+. .+.+..|.-+.| ......++..+|..+-.+
T Consensus 158 qvn~~grip~knI~k~F~~~----k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~ 233 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD----KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGK 233 (1189)
T ss_pred cccccccccHHHHHHHhhcC----CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccC
Confidence 34567777776665555321 22344444444432 233344554443 234446889999999999
Q ss_pred CCCccCHHHHHHHHHHh---------CCCCCCHHHHHHHHHHhcCC----CCcceeHHHHHHHHHh
Q 028192 158 HDGKITAEELFGVFTKL---------GDELCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~---------g~~~ls~~~~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 210 (212)
+.-++|.++|..+|..- -++.+.+..+..||..|..| ..|+|+-+-|+.||+.
T Consensus 234 ~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 234 KKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 88999999999999762 23457888899999999877 4789999999999975
No 118
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=0.1 Score=48.90 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=54.3
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
..+..+|...|.+.+|.|+..+...++...| +....+..++...|..++|.|++.+|.-.|
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhh
Confidence 4566789999999999999999999999855 789999999999999999999999887655
No 119
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.99 E-value=0.49 Score=43.12 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHH
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCR 185 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~ 185 (212)
.....+..+|...|.+.+|.++|.+. .......+...|+..|..+++.|..+++..+...++. .+ ++.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~---rp-ev~ 208 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK---RP-EVY 208 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc---Cc-hHH
Confidence 44567888999999999999998843 3344557778888889999999999999999888774 22 677
Q ss_pred HHHHHhcCCCCcceeHHHHHHHHH
Q 028192 186 GMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 186 ~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.+|..+-.+ .+.++.++++.||.
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHH
Confidence 777766433 66777777777665
No 120
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.92 E-value=0.29 Score=45.52 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=53.0
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHH----HHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLD----DCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~----~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+++..|..+|....|.+..++|...|..+|...-.++ ++..|+...|.+..|+|+|.+|..+|..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 458889999999999999999999999999996322212 2344555566677799999999999875
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=92.33 E-value=0.65 Score=41.66 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcC-CCCcceeHHHHHHHHHh
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDK-NGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~-~ls~~~~~~l~~~~d~-~~dg~I~~~eF~~~l~~ 210 (212)
......++..+|..|-. ++.++.++|..+|.....+ ..+.+.+..||..+.. ...+.++++.|..||..
T Consensus 20 ~~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 20 ASEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cCCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 33456699999999964 4799999999999998543 4678889999988632 24567999999999974
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.21 E-value=0.34 Score=42.86 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
..+.-|..+|.|+.|++..++..++|...+. .++++.+.+++..+|.+-+|.+...||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 4456799999999999999999999999984 689999999999999999999999999988753
No 123
>PLN02228 Phosphoinositide phospholipase C
Probab=91.59 E-value=1 Score=40.40 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=54.3
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCC----CCcceeHHHHHHHHHh
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~-~ls~~~~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 210 (212)
......++..+|..|-.+ +.|+.++|..+|.....+ ..+.+.+.+++..+... ..|.++++.|..||..
T Consensus 19 ~~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 19 TREPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 445678999999999643 589999999999998543 45677789999988543 3467999999999964
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.93 E-value=0.3 Score=43.15 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCccc
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRV 134 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i 134 (212)
.++.+++..++..|..+|.|+.|++...++..+|...+.. .+...+.+++...+.+-+|.+
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~-~d~~~~~~~l~ea~~~~~g~v 646 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVG-WDEDRLHEELQEADENLNGFV 646 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhccee
Confidence 4677999999999999999999999999999999988865 777777777777665544443
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.49 E-value=1.4 Score=39.81 Aligned_cols=69 Identities=13% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CC-CCCHHHHHHHHHHhcCC-------CCcceeHHHHHHHHHh
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVFTKLG-DE-LCTLDDCRGMIALVDKN-------GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-~~-~ls~~~~~~l~~~~d~~-------~dg~I~~~eF~~~l~~ 210 (212)
.....++..+|..|-.++ ++++.++|..+|.... .+ ..+.+++..++..+-.. ..+.++++.|..||..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345679999999996444 8999999999999976 33 35677788887655221 2346999999999975
No 126
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.56 E-value=1.9 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHD 159 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~-~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~ 159 (212)
++..+|..+-. +.+.|+.++|..+|..-... ..+..++..++..+..+. .....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~------------------------~~~~~ 55 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDE------------------------RNRQK 55 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHH------------------------HHHCT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccch------------------------hhccc
Confidence 46788999866 78899999999999876543 256777777777754321 01123
Q ss_pred CccCHHHHHHHHHHh
Q 028192 160 GKITAEELFGVFTKL 174 (212)
Q Consensus 160 G~I~~~El~~~l~~~ 174 (212)
+.|+.++|..+|..-
T Consensus 56 ~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 56 GQLTLEGFTRFLFSD 70 (83)
T ss_dssp TEEEHHHHHHHHHST
T ss_pred CCcCHHHHHHHHCCC
Confidence 788888888888653
No 127
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=88.80 E-value=1 Score=37.43 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCC
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSS 138 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e 138 (212)
..++.-+|..+|.+.||.|+..||+.+-. + -.+.-++.+|..+|...||.|+-.|
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l--d---knE~CikpFfnsCD~~kDg~iS~~E 303 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL--D---KNEACIKPFFNSCDTYKDGSISTNE 303 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc--c---CchhHHHHHHhhhcccccCccccch
Confidence 45566677777777777777777765542 1 3345566777777777777776553
No 128
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=1.2 Score=42.01 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC--------------------
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC-------------------- 139 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~-------------------- 139 (212)
..+...|+.+|..++|.|+..+-..++..-| +....+-.+|...|..+.|.++...|
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 4566778889999999999998888887666 45666667777777766666655411
Q ss_pred --------------------------------CC----CChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHH
Q 028192 140 --------------------------------EP----ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 183 (212)
Q Consensus 140 --------------------------------~~----~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~ 183 (212)
.+ .....+..+|+.+... .|.++..-.+-+|..-+ +.-..
T Consensus 88 ~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~---Lp~~~ 163 (847)
T KOG0998|consen 88 VLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK---LPSDV 163 (847)
T ss_pred cccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC---CChhh
Confidence 00 1113455668888765 78888888887776554 56677
Q ss_pred HHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 184 CRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 184 ~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
+..+....|.+.+|.++..||.-.|.
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred hccccccccccccCCCChhhhhhhhh
Confidence 77888999999999999999987664
No 129
>PLN02223 phosphoinositide phospholipase C
Probab=86.61 E-value=4.2 Score=36.18 Aligned_cols=69 Identities=7% Similarity=-0.040 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHhhcCCCCCccCHHHHHHHH---HHh-CCCCCCHHHHHHHHHHhcCCC--------CcceeHHHHHHHH
Q 028192 141 PACEPELKETFDFFDADHDGKITAEELFGVF---TKL-GDELCTLDDCRGMIALVDKNG--------DGFVCFEDFSRMM 208 (212)
Q Consensus 141 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l---~~~-g~~~ls~~~~~~l~~~~d~~~--------dg~I~~~eF~~~l 208 (212)
....+.++.+|..|- ++.|.++.+.|.++| ... |....+.++++.|+..+-... .+.++++.|..||
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 345678999999994 677899999999999 554 434678888888887653222 2569999999999
Q ss_pred Hh
Q 028192 209 EL 210 (212)
Q Consensus 209 ~~ 210 (212)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 65
No 130
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.98 E-value=0.34 Score=39.87 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCCCcccccCCCC---------CCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 118 EVKSMLSEVDREGDGRVGNSSCE---------PACEPELKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 118 ~~~~l~~~~d~~~~g~i~~~e~~---------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
.+...|..+|.|.++.|+-.|.. .....-.+..|+..|.|+|..|+..|++.-|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34555666677776666655441 1223455677888899999999999998887543
No 131
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=79.11 E-value=17 Score=26.80 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=49.3
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCC
Q 028192 83 VQACKLL---DRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDAD 157 (212)
Q Consensus 83 ~~~F~~~---D~d~~G~I~~~el~~~l~~l~~~--~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d 157 (212)
+++|..| -..+...|+...|..+++..++. .++..++.-+|..+...+...|+|++|. +-|..+=...-.+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~----~aL~~lA~~~~~~ 77 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFL----EALAELAEKKGKD 77 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHH----HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHH----HHHHHHHHHhhcc
Confidence 4455555 34455689999999999988763 2677788888888765555667777662 2223333333222
Q ss_pred CCCccCHHHHHHHHHHh
Q 028192 158 HDGKITAEELFGVFTKL 174 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~ 174 (212)
.+ +.+++...|...
T Consensus 78 ~~---~~~~~~~kl~~~ 91 (154)
T PF05517_consen 78 KS---SAEELKEKLTAG 91 (154)
T ss_dssp CT---HHHHHHHHHHTT
T ss_pred cc---cHHHHHHHHHcc
Confidence 22 556666665443
No 132
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.04 E-value=4 Score=29.60 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-------CCcceeHHHHHHHHH
Q 028192 157 DHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN-------GDGFVCFEDFSRMME 209 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~-------~dg~I~~~eF~~~l~ 209 (212)
...+.|+.+||.++-.-+-+ +-.-+..++..+..+ .++.|+|+.|..||.
T Consensus 3 ~~~~~lsp~eF~qLq~y~ey---s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 3 KEWVSLSPEEFAQLQKYSEY---STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp ---S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred cceeccCHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 35678999999988765543 233466666666433 345799999999986
No 133
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=76.82 E-value=20 Score=24.16 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCC
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHD 159 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~ 159 (212)
+.|...|..+-. .|...++..+.+.+| +++.++..+-... ... .+....++..+-....
T Consensus 4 ~~l~~~f~~i~~----~V~~~~Wk~laR~LG---Lse~~I~~i~~~~-------------~~~-~eq~~qmL~~W~~~~G 62 (96)
T cd08315 4 ETLRRSFDHFIK----EVPFDSWNRLMRQLG---LSENEIDVAKANE-------------RVT-REQLYQMLLTWVNKTG 62 (96)
T ss_pred hHHHHHHHHHHH----HCCHHHHHHHHHHcC---CCHHHHHHHHHHC-------------CCC-HHHHHHHHHHHHHhhC
Confidence 455666666533 488889999999999 5677777655432 222 4555566666644333
Q ss_pred CccCHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 028192 160 GKITAEELFGVFTKLGDELCTLDDCRGMIA 189 (212)
Q Consensus 160 G~I~~~El~~~l~~~g~~~ls~~~~~~l~~ 189 (212)
..-+...|.++|..++. +...+.++..+.
T Consensus 63 ~~At~~~L~~aL~~~~~-~~~Ae~I~~~l~ 91 (96)
T cd08315 63 RKASVNTLLDALEAIGL-RLAKESIQDELI 91 (96)
T ss_pred CCcHHHHHHHHHHHccc-ccHHHHHHHHHH
Confidence 46789999999999995 667777766543
No 134
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.50 E-value=3.6 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLI 107 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~ 107 (212)
+++.+.|+.+ .++.++|+..||+..|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 5678889998 67789999999999874
No 135
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=75.87 E-value=20 Score=24.75 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
+..+|-+++.-++-..+..+++.+|...|.+ +.++.++.+|..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E-~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE-IDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc-cCHHHHHHHHHHh
Confidence 4567888888888899999999999999984 8889999999887
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=75.43 E-value=9.8 Score=34.52 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=41.4
Q ss_pred CCCccCHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 158 HDGKITAEELFGVFTKLGD-ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~-~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.|.++.+||..+.+.+.. +.....++..+|..+..+ .+.|+.++|..||..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 4589999999988887742 235788999999999544 468999999999975
No 137
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=73.45 E-value=5.5 Score=35.70 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGA 111 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~ 111 (212)
.++..-++-+..+|..+|.|+||-++..||..+.....-
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 466688999999999999999999999999999987754
No 138
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=73.23 E-value=6.4 Score=36.78 Aligned_cols=139 Identities=10% Similarity=0.100 Sum_probs=79.0
Q ss_pred ccCCHHHHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCC--------
Q 028192 72 ADISLDMNYE-LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPA-------- 142 (212)
Q Consensus 72 ~~~t~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~-------- 142 (212)
.++++-+|+. ++..+-.+|+.....|+..++..+|....+...+...+.+-|... .-..+.++|+.|...
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~ 213 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQ 213 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhcc
Confidence 3456667764 455666677767778999999999988776522233332333322 223456788755111
Q ss_pred ---ChhHHHHHHHhh--cCCCCCccCHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcCC-----CCcceeHHHHHHHHHh
Q 028192 143 ---CEPELKETFDFF--DADHDGKITAEELFGVFTKLGDELC--TLDDCRGMIALVDKN-----GDGFVCFEDFSRMMEL 210 (212)
Q Consensus 143 ---~~~~l~~~F~~~--D~d~~G~I~~~El~~~l~~~g~~~l--s~~~~~~l~~~~d~~-----~dg~I~~~eF~~~l~~ 210 (212)
...+....|-.= +...--.|+..||.++|..-..++. ....+++++..+-.| ..-.+.+.||+.||-.
T Consensus 214 ~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 214 QKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred chhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 111122222111 2222257999999999976533221 122455555555333 3446999999999864
Q ss_pred C
Q 028192 211 Q 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 294 r 294 (1267)
T KOG1264|consen 294 R 294 (1267)
T ss_pred c
Confidence 3
No 139
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=72.27 E-value=1.9 Score=35.41 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=19.5
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHH
Q 028192 84 QACKLLDRDNDGVVLRSELEALLI 107 (212)
Q Consensus 84 ~~F~~~D~d~~G~I~~~el~~~l~ 107 (212)
-.|.+.|-+++|+++..||..++.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHH
Confidence 357778889999999999877765
No 140
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=71.80 E-value=12 Score=27.06 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 95 G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
+.|+..||.++-.-.. .+...++.++..|..+| .+ ..|+ ..+.|+.+-|+.+|...
T Consensus 6 ~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g--~~-----------------~~~~--~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDG--SL-----------------AKYN--PEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTS--GG-----------------GGGE--ETTEE-HHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCC--cc-----------------cccC--CCCCcCHHHHHHHHHHH
Confidence 4678888877665443 34457777777775443 21 1333 22378888888888775
Q ss_pred CCCCCCHHHHHHHHHHh
Q 028192 175 GDELCTLDDCRGMIALV 191 (212)
Q Consensus 175 g~~~ls~~~~~~l~~~~ 191 (212)
-...++++.+..||..+
T Consensus 62 Le~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 62 LEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp TT-S--HHHHHHHHHHS
T ss_pred HcCCCCHHHHHHHHHHH
Confidence 32347777777777665
No 141
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=71.08 E-value=26 Score=31.94 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 81 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
-+.++|..+|..++|.|+..+|...|..+-.. -..+-+..++..+|.+++ ..+-++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~-~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAG-DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCcc-ccccccc
Confidence 35567777777778888877777777766443 334455666666666665 5444433
No 142
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=70.60 E-value=3.6 Score=40.64 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 86 CKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 86 F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
|+.+|.||.|.|+..||..++..-.. .+..++..++.-...|.+...+|++|
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~--ytqse~dfllscae~dend~~~y~df 4114 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKH--YTQSEIDFLLSCAEADENDMFDYEDF 4114 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcccc--chhHHHHHHHHhhccCccccccHHHH
Confidence 56779999999999999999975443 67778888877777777777777644
No 143
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.61 E-value=7.4 Score=26.22 Aligned_cols=29 Identities=7% Similarity=0.155 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHhcCCCCcceeHHHHHHH
Q 028192 179 CTLDDCRGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 179 ls~~~~~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
+++++...++..+........++.+|..-
T Consensus 34 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 62 (104)
T cd07313 34 LDAEEAAELLAEAEALEEEAPDLYEFTSL 62 (104)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444444444433322333344444433
No 144
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.35 E-value=6.1 Score=25.03 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=12.9
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
+..+...|+.=+.+.|+.+||.+.|+.+
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3333344443344455555555555443
No 145
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=8.6 Score=32.52 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCH-HHHHHHHHhhcCCCCcccccC
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ-EEVKSMLSEVDREGDGRVGNS 137 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~-~~~~~l~~~~d~~~~g~i~~~ 137 (212)
-++++++|+.+|+.++|+|+..-++.++..++.. .++ ..+..+-..+|...-|.|-.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~-vse~a~v~l~~~~l~pE~~~iil~~ 366 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL-VSEPAYVMLMRQPLDPESLGIILLE 366 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhccc-ccCHHHHHHhcCccChhhcceEEec
Confidence 4578999999999999999999999999999843 444 444444455666665555444
No 146
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=67.07 E-value=23 Score=20.74 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~ 125 (212)
.||.+++..|...|.. +.+++..+...+-..+| ++...|..-|..
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~---l~~~~V~~WF~n 50 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG---LTERQVKNWFQN 50 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT---SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hcccccccccccccccc---ccccccccCHHH
Confidence 4788999999999995 55789999888888887 667777776643
No 147
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=65.53 E-value=21 Score=20.41 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHH
Q 028192 164 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 207 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~ 207 (212)
.+|...+|..+|+ +..++...+..+.. ...++.++.++-
T Consensus 3 ~~d~~~AL~~LGy---~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGY---SKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 4678889999996 89999999998864 344567776654
No 148
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=65.36 E-value=25 Score=20.52 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~ 125 (212)
.++.+++..|...|.. +.+.+..++..+...+| ++...|..-|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 4667889999999997 55889999999988888 667777777754
No 149
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=65.26 E-value=20 Score=24.64 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=27.3
Q ss_pred HhhcCCCCCccCHHHHHHHHHHh----------CCCCCCHHHHHHHHHHhcCCCCccee
Q 028192 152 DFFDADHDGKITAEELFGVFTKL----------GDELCTLDDCRGMIALVDKNGDGFVC 200 (212)
Q Consensus 152 ~~~D~d~~G~I~~~El~~~l~~~----------g~~~ls~~~~~~l~~~~d~~~dg~I~ 200 (212)
+.||...+-+||.++++++++.- | +.++..-+-.||-.....+...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg-eDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG-DDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC-chhHHHHHHHHHHHHHhCCCCCCC
Confidence 35677777788888877777641 3 235555555555444433433333
No 150
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=64.96 E-value=8.5 Score=34.86 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCC
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGD 196 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~d 196 (212)
-+..+|+.+|.+++|.|+..+|...|..+.. .-.-+-+.-+++.+|.+++
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc
Confidence 4556777777777777777777777776642 2233445556666666655
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.73 E-value=25 Score=22.06 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 164 AEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
-+++..++...|. .++..++..+++.-
T Consensus 16 d~~m~~if~l~~~-~vs~~el~a~lrke 42 (68)
T PF07308_consen 16 DDDMIEIFALAGF-EVSKAELSAWLRKE 42 (68)
T ss_pred hHHHHHHHHHcCC-ccCHHHHHHHHCCC
Confidence 3455555555554 45555555555553
No 152
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.45 E-value=18 Score=33.35 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=52.8
Q ss_pred cccCCC---CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC-------CCCCHHHHHHHHHHhcCCCCcceeHHH
Q 028192 134 VGNSSC---EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD-------ELCTLDDCRGMIALVDKNGDGFVCFED 203 (212)
Q Consensus 134 i~~~e~---~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~-------~~ls~~~~~~l~~~~d~~~dg~I~~~e 203 (212)
|+++++ ....+..++..|..+|. ++|.++.+|+..++...-. ...+.+....++...|.+..|.+.+++
T Consensus 4 ~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 4 ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNED 82 (646)
T ss_pred cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecc
Confidence 455544 44556788888888887 8999999999998876411 123444456677888888888888777
Q ss_pred HHHHHH
Q 028192 204 FSRMME 209 (212)
Q Consensus 204 F~~~l~ 209 (212)
+...+.
T Consensus 83 ~~~ll~ 88 (646)
T KOG0039|consen 83 LEILLL 88 (646)
T ss_pred hhHHHH
Confidence 766554
No 153
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.72 E-value=7.1 Score=33.01 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=42.6
Q ss_pred CChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcCCCCcceeHHHH
Q 028192 142 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI-ALVDKNGDGFVCFEDF 204 (212)
Q Consensus 142 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~-~~~d~~~dg~I~~~eF 204 (212)
...+.++++|..+|+.+.|+|+-+-++.++..+.. .+++.+.-.+. ..+|...-|.|-.++|
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~-~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR-LVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc-cccCHHHHHHhcCccChhhcceEEeccc
Confidence 44678999999999999999999999999999873 34544433332 2344444444444433
No 154
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=61.26 E-value=16 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=29.5
Q ss_pred HhhcCCCCCccCHHHHHHHHHHh----------CCCCCCHHHHHHHHHHh
Q 028192 152 DFFDADHDGKITAEELFGVFTKL----------GDELCTLDDCRGMIALV 191 (212)
Q Consensus 152 ~~~D~d~~G~I~~~El~~~l~~~----------g~~~ls~~~~~~l~~~~ 191 (212)
+.||...+.+|+.++++++.+.- | +.++..-+-+++..-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktg-eDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTG-EDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCC-cccHHHHHHHHHHHH
Confidence 46899999999999999999862 4 356666666666554
No 155
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=60.98 E-value=35 Score=23.59 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
+...|.+++.-++...+..++..+|.++|.. ...+.+..++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E-~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE-IDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc-cCHHHHHHHHHHhc
Confidence 4456777777788789999999999999997 89999999998874
No 156
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=60.62 E-value=16 Score=17.28 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=9.3
Q ss_pred cCCCCCccCHHHHHHH
Q 028192 155 DADHDGKITAEELFGV 170 (212)
Q Consensus 155 D~d~~G~I~~~El~~~ 170 (212)
|.|+||.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777776666543
No 157
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=59.58 E-value=91 Score=25.19 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=34.4
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 028192 70 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLS 124 (212)
Q Consensus 70 ~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~ 124 (212)
-...||.+++.+|+.-|+. +.||+..--+.+-..|+++ +.+++-.|+
T Consensus 249 PRTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLN---EsQIKIWFQ 295 (342)
T KOG0493|consen 249 PRTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLN---ESQIKIWFQ 295 (342)
T ss_pred ccccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcC---HHHhhHHhh
Confidence 3567999999999998875 5688887777777777744 555555553
No 158
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.88 E-value=71 Score=23.29 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKL--GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~--g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.+|.+++. ||.++..|...+..-+ .+ .++.+++..++.....-+...++|-.|...|+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f-~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENF-GIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66777764 4678877766555443 22 47888888888877666666788888877765
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=57.82 E-value=13 Score=24.18 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC
Q 028192 158 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN 194 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~ 194 (212)
..|+||.+|+..+|.... ++.+.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~~---~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD---LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCccC---CCHHHHHHHHHHHHHC
Confidence 568999999999987444 6888899888877443
No 160
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=57.71 E-value=40 Score=20.40 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE 129 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~ 129 (212)
+|+.....|+.+|.... ..+.+...++...|. .+...+..++..+...
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~------vs~~tvt~ml~~L~~~ 49 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG------VSPPTVTEMLKRLAEK 49 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT------S-HHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC------CChHHHHHHHHHHHHC
Confidence 34456677888888876 577899999998884 8888888888887543
No 161
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=56.64 E-value=55 Score=21.59 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=37.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 159 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 159 ~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.-.|...+|+..|..... .....+...+=..+|...++.|+-=||--+.+
T Consensus 20 r~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 357999999999999863 34445666677788999999999988877654
No 162
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.17 E-value=47 Score=23.16 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
+...|.++..-++..++.+++..+|...|.. +....+..++..+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGve-Vd~~~~~l~~~~L~ 49 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNAD-VEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHc
Confidence 3344555556667789999999999999997 88888888887774
No 163
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=54.70 E-value=46 Score=20.17 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=28.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHHhCC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGV----VLRSELEALLIRLGA 111 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~----I~~~el~~~l~~l~~ 111 (212)
..||.++.+.|...|.. .|+ ++..+...+...+|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC
Confidence 45889999999999986 556 788888888888874
No 164
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=53.69 E-value=67 Score=21.71 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q 028192 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 175 (212)
Q Consensus 96 ~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 175 (212)
.|...+++.+.+.+| +++.++..+-..... ...+....+++.+=......-+...|..+|+.++
T Consensus 17 ~~~~~~wK~faR~lg---lse~~Id~I~~~~~~-------------d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~ 80 (97)
T cd08316 17 VMTLKDVKKFVRKSG---LSEPKIDEIKLDNPQ-------------DTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAK 80 (97)
T ss_pred HcCHHHHHHHHHHcC---CCHHHHHHHHHcCCC-------------ChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHcc
Confidence 477888999999998 567777766543321 2234444555555333223445688999999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028192 176 DELCTLDDCRGMIAL 190 (212)
Q Consensus 176 ~~~ls~~~~~~l~~~ 190 (212)
. +...+.+..++..
T Consensus 81 l-~~~Ad~I~~~l~~ 94 (97)
T cd08316 81 L-CTKADKIQDIIEA 94 (97)
T ss_pred c-hhHHHHHHHHHHh
Confidence 6 5666677766543
No 165
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=52.19 E-value=59 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=16.1
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 028192 95 GVVLRSELEALLIRLGADPPTQEEVKSMLS 124 (212)
Q Consensus 95 G~I~~~el~~~l~~l~~~~~s~~~~~~l~~ 124 (212)
|....-+|.++|+-+|+ +...++.+..
T Consensus 62 ~l~~yP~l~~WL~vVgl---~~~~i~~i~~ 88 (129)
T PF13543_consen 62 ELNSYPSLRQWLRVVGL---RPESIQAILS 88 (129)
T ss_pred hcccCCcHHHHhhhcCC---CHHHHHHHHH
Confidence 44555677777777773 4555555543
No 166
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=51.19 E-value=46 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 85 ~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
+|..+-....+.|+..-|..+|++.|+. -++..+..+|..+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLr-tsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLR-TSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCC-cCCchHHHHHHHH
Confidence 4666655557999999999999999997 7776777766654
No 167
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=50.94 E-value=58 Score=21.70 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.0
Q ss_pred cCHHHHHHHHHH
Q 028192 162 ITAEELFGVFTK 173 (212)
Q Consensus 162 I~~~El~~~l~~ 173 (212)
.+..++...+..
T Consensus 53 ~~~~~~~~~l~~ 64 (106)
T cd07316 53 FGLEEYARQFRR 64 (106)
T ss_pred CCHHHHHHHHHH
Confidence 344444444433
No 168
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=50.92 E-value=51 Score=22.43 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=34.0
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC---CCcceeHHHHHHHHH
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN---GDGFVCFEDFSRMME 209 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~---~dg~I~~~eF~~~l~ 209 (212)
..+..-|..+-. +|+|....|-+.+ |+ .-+.+-..+||..+..- ....|+.+|...|+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM-~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GM-KDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CC-cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 455566666655 7788888887665 44 23666667776654321 245688877777664
No 169
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=50.87 E-value=6.1 Score=28.15 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=4.7
Q ss_pred CccCHHHHHHHHH
Q 028192 160 GKITAEELFGVFT 172 (212)
Q Consensus 160 G~I~~~El~~~l~ 172 (212)
|.|+.+|...+..
T Consensus 38 G~v~~~E~~~i~~ 50 (140)
T PF05099_consen 38 GEVDPEEIEAIRQ 50 (140)
T ss_dssp SS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4444444444433
No 170
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=50.19 E-value=72 Score=21.05 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.7
Q ss_pred CccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC
Q 028192 160 GKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN 194 (212)
Q Consensus 160 G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~ 194 (212)
..||.+||....+..|. .++..+++.++..+-.+
T Consensus 13 n~iT~~eLlkyskqy~i-~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNI-SITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcC
Confidence 36888889888888887 68888888887776433
No 171
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=49.94 E-value=6.4 Score=30.32 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHhhcC-CCCCccCHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 149 ETFDFFDA-DHDGKITAEELFGVFTKLGDELCTL-DDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 149 ~~F~~~D~-d~~G~I~~~El~~~l~~~g~~~ls~-~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
+.|-.+|+ --||+++-.||.-+-.. .+.. .-+..+|...|.|+||.|.++||-.++
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAP----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeccccCCCccccccccccccccCC----cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34555565 34789998887654321 2232 335678899999999999999997765
No 172
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=49.47 E-value=21 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.1
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
--+.+++..||.+++|.|+.-.++-+|-.+
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 356688899999999999999999887643
No 173
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=48.78 E-value=75 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 84 ~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
..|.++...++..++.+++..+|...|.. +....+..++..+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGve-Ve~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVE-VDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHc
Confidence 44555556677789999999999999987 88888777777663
No 174
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=48.63 E-value=49 Score=18.70 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhc-CCC-CCcccHHHHHHHHHH
Q 028192 78 MNYELVQACKLLD-RDN-DGVVLRSELEALLIR 108 (212)
Q Consensus 78 ~~~~l~~~F~~~D-~d~-~G~I~~~el~~~l~~ 108 (212)
-+..+..+|..|- ++| ...++..||+.+|..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4667888898885 333 468999999999874
No 175
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=48.51 E-value=67 Score=25.58 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCC
Q 028192 101 ELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCT 180 (212)
Q Consensus 101 el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls 180 (212)
.|+++-...++ +++.+...++.. .|.|+ +-.+.-...|...|+.+=. .||.+++..+...... +
T Consensus 58 kFq~l~k~y~i--LsDeekR~~YDe-----tG~id--d~~~d~~~~~~e~~~~iyk----~VteedIeef~a~Y~g---S 121 (264)
T KOG0719|consen 58 KFQQLQKAYQI--LSDEEKRAVYDE-----TGSID--DESGDIDEDWLEFWRAIYK----KVTEEDIEEFEANYQG---S 121 (264)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHhc-----cCCCC--CccchhhhHHHHHHHHHHh----hcccccHHHHHHHhcc---c
Confidence 34444333343 667777776643 34444 3333333445555544432 3444445544444332 5
Q ss_pred HHHHHHHHHHh
Q 028192 181 LDDCRGMIALV 191 (212)
Q Consensus 181 ~~~~~~l~~~~ 191 (212)
+++-..|+..|
T Consensus 122 EeEk~Dl~~~Y 132 (264)
T KOG0719|consen 122 EEEKKDLLKLY 132 (264)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 176
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.03 E-value=80 Score=22.02 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
+..+|-+....++..+|.+++..+|...|. .+....+..+++.+
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGv-eVd~~~~~l~~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNA-DVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHH
Confidence 345666667777778999999999999997 57888888888777
No 177
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=47.26 E-value=57 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=39.4
Q ss_pred cccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028192 69 DMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 69 ~~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~ 125 (212)
.....||.+++..|...|+ +++||...|-.++-+.|+ +++.+|+-.|+.
T Consensus 104 r~RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~---LsetQVkvWFQN 152 (197)
T KOG0843|consen 104 RIRTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLS---LSETQVKVWFQN 152 (197)
T ss_pred ccccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcC---CChhHhhhhhhh
Confidence 3567799999999999998 578999999888888887 567777666654
No 178
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=44.49 E-value=55 Score=21.86 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCHHH----HHHH--------HHHh---cCCCCcceeHHHHHHHHHhCC
Q 028192 164 AEELFGVFTKLGDELCTLDD----CRGM--------IALV---DKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~----~~~l--------~~~~---d~~~dg~I~~~eF~~~l~~~~ 212 (212)
..|++++|..+|+..-+..+ +++| +..+ ..-+.++|+.++|+-.|++.+
T Consensus 5 ~~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~~r~~k~~~eD~~FliR~D~ 68 (92)
T cd07978 5 TKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQRRRGKVKVEDLIFLLRKDP 68 (92)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCH
Confidence 46788888888863222222 1222 1111 113678899999998887653
No 179
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=44.07 E-value=56 Score=22.24 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCC
Q 028192 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDAD 157 (212)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d 157 (212)
....+...|..+-. +|+|...+|..|+ |.. -+.+.+.+||..+-.-.. -
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~-dSkeFA~eLFdALaRrr~-------------------------i 76 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMK-DSKEFAGELFDALARRRG-------------------------I 76 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--------------------------
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCc-ccHHHHHHHHHHHHHhcC-------------------------C
Confidence 35667777877766 8899999999887 553 567777788776532110 1
Q ss_pred CCCccCHHHHHHHHHHhC
Q 028192 158 HDGKITAEELFGVFTKLG 175 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g 175 (212)
....|+.+||++++..+-
T Consensus 77 ~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 77 KGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -SSEE-HHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHhh
Confidence 125788888888887654
No 180
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=43.55 E-value=48 Score=17.12 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIR 108 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 108 (212)
+++..|+..+. .|.|+.+||...-..
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHHHH
Confidence 45566666555 689999999776543
No 181
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=47 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 166 ELFGVFTKLGDELCTLDDC----RGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 166 El~~~l~~~g~~~ls~~~~----~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
-|..+|+++|++..++.-. +.+|..+ ..|.|+-+|=+.+|.
T Consensus 77 kld~vlramgy~p~~e~~~~i~~~~i~~ql---e~Gei~peeA~~~L~ 121 (122)
T COG3877 77 KLDEVLRAMGYNPDSENSVNIGKKKIIDQL---EKGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHHHcCCCCCCCChhhhhHHHHHHHH---HcCCCCHHHHHHHhc
Confidence 3556666666543333222 2255555 356677777666654
No 182
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=43.19 E-value=81 Score=25.05 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHH
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVF 171 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l 171 (212)
++.+++-..+..+-......-+-++|.+.+......+...|.......++..||+..+
T Consensus 121 P~~del~~~~~~y~~~rg~y~~~e~f~w~s~v~YwlvtdLy~~~r~~~lt~~eLrk~a 178 (233)
T PF06992_consen 121 PSVDELYQRYKRYCRYRGFYPSIEEFPWRSNVEYWLVTDLYRRMRQRQLTDEELRKRA 178 (233)
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhCCCcchhHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555555444322111223457888888888888899998889999999998743
No 183
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=41.95 E-value=1.8e+02 Score=23.14 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred HhcCCCCC-cccHHHH-HHHHHHhCCCCCCHHHHHHHHHhhcCCCCcc--cccCCCCCCChhHHHHHHHhhcCCCCCccC
Q 028192 88 LLDRDNDG-VVLRSEL-EALLIRLGADPPTQEEVKSMLSEVDREGDGR--VGNSSCEPACEPELKETFDFFDADHDGKIT 163 (212)
Q Consensus 88 ~~D~d~~G-~I~~~el-~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~--i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~ 163 (212)
.-|.+.+| +++--|+ ..+|...| .+...++.++..+....+-. |.-........+-+...|..+..++.
T Consensus 69 ESD~~~~g~~~SHFElYl~AM~e~G---Adt~~I~~fl~~~~~g~~v~~Al~~~~~p~~~~~Fv~~Tf~~i~~~~~---- 141 (232)
T PF11251_consen 69 ESDEDPDGGYISHFELYLDAMEEVG---ADTSPIDRFLSLLREGTSVFEALQQADVPEPAKRFVRFTFEIIAEGKP---- 141 (232)
T ss_pred ccccCCCCCcccHHHHHHHHHHHcC---CChHHHHHHHHHHHcCCCHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH----
Confidence 34666655 8887777 67888888 55667777777775432211 11123333444556677777765442
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 164 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
.+...+ -.+|.|.+=++.+..|++.+. ...-.+..|..||.+
T Consensus 142 -H~iAAa-FtfGREdlIP~MF~~il~~~~---~~~~~~~~f~yYL~R 183 (232)
T PF11251_consen 142 -HEIAAA-FTFGREDLIPDMFRSILKDLN---IPPGQLPTFRYYLER 183 (232)
T ss_pred -HHHHHH-HHhccccchHHHHHHHHHHhc---CCccccHHHHHHHHh
Confidence 222222 245666777777777777762 223455666666654
No 184
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=41.27 E-value=54 Score=23.66 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=38.9
Q ss_pred CCCCccCHHHHHHHHHHh------CCC--CCCHHHHHHHHHHhcCCCCc-ceeHHHHHHH
Q 028192 157 DHDGKITAEELFGVFTKL------GDE--LCTLDDCRGMIALVDKNGDG-FVCFEDFSRM 207 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~~------g~~--~ls~~~~~~l~~~~d~~~dg-~I~~~eF~~~ 207 (212)
-|+-.||.+||.+++..- +.+ .+..+++..+...+...+.+ .+++.|-+..
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 366789999999999863 211 48899999999998776655 4888887654
No 185
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=41.24 E-value=1.1e+02 Score=21.29 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=32.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 85 ~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
.|.++---++..++.+++..+|...|.. +....+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGve-vd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGAD-ADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHHc
Confidence 3444444566679999999999999987 88888888887764
No 186
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=41.19 E-value=1.7e+02 Score=22.80 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhcCCCCcc--cccCC------CCC-CCh-
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGR--VGNSS------CEP-ACE- 144 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--~~~~s~~~~~~l~~~~d~~~~g~--i~~~e------~~~-~~~- 144 (212)
+--.++.++....-..+.|.|+..|+...+.... ..-++.+++.+.+..+..=+.|. +.|.. ... ...
T Consensus 94 ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g~~l~~~~sg~~vv~s~~~~e~~ 173 (223)
T PF04157_consen 94 ELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLGFRLRKFGSGVKVVQSVPYSELS 173 (223)
T ss_dssp HHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSSEEEEEETTTEEEEECST-CHH-
T ss_pred HHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCchhhh
Confidence 3345677777666666678999999999998764 33388999999999998766651 22331 111 122
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 192 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d 192 (212)
.....+.........|++|..++...+ +++..-+.+.+..+-
T Consensus 174 ~~~~~il~~~~~~~~g~vt~~~l~~~~------~ws~~~a~~~L~~~~ 215 (223)
T PF04157_consen 174 KDQSRILELAEEENGGGVTASELAEKL------GWSVERAKEALEELE 215 (223)
T ss_dssp HHHHHHHHHH--TTTSEEEHHHHHHHH------TB-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 344566666634567999999999877 367777777777653
No 187
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=41.10 E-value=1.2e+02 Score=21.05 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 148 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 148 ~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
..+|-+....++..||.+++..+|...|. .+....+..+++.+
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGv-eVe~~~~~lf~~~L 46 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGV-EVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHH
Confidence 45666667777889999999999999997 57777777777776
No 188
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=41.01 E-value=72 Score=19.41 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.2
Q ss_pred CccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 160 GKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 160 G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
-.+|.+||..++..++. .++..++-.|+..+
T Consensus 8 ~~lTeEEl~~~i~~L~~-~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDE-IPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 35889999999999984 78888888877665
No 189
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=40.93 E-value=71 Score=18.32 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~ 125 (212)
++.+++..|...|... .+.+..+...+...+| ++...|..-|..
T Consensus 7 ~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (56)
T smart00389 7 FTPEQLEELEKEFQKN-----PYPSREEREELAAKLG---LSERQVKVWFQN 50 (56)
T ss_pred CCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHC---cCHHHHHHhHHH
Confidence 6778999999999852 2788889988888887 557777776654
No 190
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=40.30 E-value=54 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCC
Q 028192 158 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 195 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~ 195 (212)
.++-|+..++.+.|...|. .++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~-~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGE-ELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcCh-hhhHHHHHHHHHHHHHCC
Confidence 4468999999999999986 689999999999987664
No 191
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.00 E-value=62 Score=18.92 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC
Q 028192 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREG 130 (212)
Q Consensus 94 ~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~ 130 (212)
.|.|+..+|+.++. .+...+..++..+|..+
T Consensus 8 ~~~itv~~~rd~lg------~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG------LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT------S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC------ccHHHHHHHHHHHhccC
Confidence 78899999999983 78889999999988654
No 192
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=37.84 E-value=55 Score=24.94 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=23.9
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 028192 155 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 192 (212)
Q Consensus 155 D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d 192 (212)
..+.+|++..+||.+.+..-+. .++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~-~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGL-WVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-T-T--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCC-CCCHHHHHHHHhhCC
Confidence 4578899999999999988764 588999999887654
No 193
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.72 E-value=66 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.5
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 028192 155 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 192 (212)
Q Consensus 155 D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d 192 (212)
..|.+|++..++|.+.++.-+. .++.+++.++...-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~-~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYK-WVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccC-CCCHHHHHHHHHcCC
Confidence 3467899999999998876553 689999888876643
No 194
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.57 E-value=84 Score=27.37 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCCCCCChh---------HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHH
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSCEPACEP---------ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC 184 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~---------~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~ 184 (212)
+.-+-++.+-..+|.|.+|.|+.+|-...-.+ .-.+.|.. .|..|+.++|-.++..--..+.+.+++
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~t 140 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNERT 140 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHHH
Confidence 44566777888888888898988744222111 22224432 345799999988887653335677776
Q ss_pred HHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 185 RGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 185 ~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
-+.+-.+ |.+-.|+..++.
T Consensus 141 vqWLi~~-------VeLPqyve~fk~ 159 (575)
T KOG4403|consen 141 VQWLIND-------VELPQYVEAFKA 159 (575)
T ss_pred HHHHHHh-------cccHHHHHHHHh
Confidence 6655443 344555555543
No 195
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=37.52 E-value=80 Score=20.05 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCcccccCCCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q 028192 130 GDGRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 175 (212)
Q Consensus 130 ~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 175 (212)
+.|.|.-+.|....++++..+|...-. .+..+..|+..+...+|
T Consensus 24 N~~~i~~~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 24 NAGAIKPEDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred hHHhCCHHhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 335566668888999999999999865 45799999999998888
No 196
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=37.32 E-value=2.3e+02 Score=23.96 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=55.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCC---------CCHHHHHHHHHhhcCCCC-cccc--cC------CC--CCCChh
Q 028192 86 CKLLDRDNDGVVLRSELEALLIRLGADP---------PTQEEVKSMLSEVDREGD-GRVG--NS------SC--EPACEP 145 (212)
Q Consensus 86 F~~~D~d~~G~I~~~el~~~l~~l~~~~---------~s~~~~~~l~~~~d~~~~-g~i~--~~------e~--~~~~~~ 145 (212)
|..++.++.+.++..+...+|..+++.. .....++.++..+...+- |-|- .+ .+ ......
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~ 210 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCS 210 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcH
Confidence 3444445556788999999999887531 123577778777765542 3221 01 11 335566
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLG 175 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 175 (212)
++..+|+.+-.-+-+++...=++.+++..-
T Consensus 211 di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E 240 (342)
T cd07894 211 DIRYAFRYPFDLGRDFFFSRIVREGFQSVE 240 (342)
T ss_pred HHHHHhhhccccCchHHHHHHHHHHHHHHH
Confidence 788888777666667777777777766543
No 197
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=36.88 E-value=2e+02 Score=27.17 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCCcccccCCC--------CCCChhHHHHHHHhhcCCCCCccCHHHHH-------HHHHHh------CCC
Q 028192 119 VKSMLSEVDREGDGRVGNSSC--------EPACEPELKETFDFFDADHDGKITAEELF-------GVFTKL------GDE 177 (212)
Q Consensus 119 ~~~l~~~~d~~~~g~i~~~e~--------~~~~~~~l~~~F~~~D~d~~G~I~~~El~-------~~l~~~------g~~ 177 (212)
+..+++.||...+|.|..-+| .....+.++.+|......+.-.+ ...|. ++.+.+ |..
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 456778889988888776544 34556788899999877666554 44444 343433 332
Q ss_pred CCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 178 LCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 178 ~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
++ +--++.+|.. .++--.|.+..|+.++...
T Consensus 551 Nv-epsvrsCF~~--v~~~pei~~~~f~dw~~~e 581 (966)
T KOG4286|consen 551 NI-EPSVRSCFQF--VNNKPEIEAALFLDWMRLE 581 (966)
T ss_pred CC-ChHHHHHHHh--cCCCCcchHHHHHHHhccC
Confidence 22 2345666764 3556679999999887643
No 198
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=36.58 E-value=1.1e+02 Score=24.78 Aligned_cols=10 Identities=20% Similarity=0.591 Sum_probs=5.7
Q ss_pred CCccCHHHHH
Q 028192 159 DGKITAEELF 168 (212)
Q Consensus 159 ~G~I~~~El~ 168 (212)
||.|+..|+.
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4556665554
No 199
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.14 E-value=85 Score=17.97 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCCccC-HHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 158 HDGKIT-AEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 158 ~~G~I~-~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
+.|.|+ ..++.+.|...|+ .+++..++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~-~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGF-RISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCc-ccCHHHHHHHHHHc
Confidence 456776 4444455555676 68888888887754
No 200
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=35.78 E-value=1.2e+02 Score=20.48 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=34.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC
Q 028192 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR 128 (212)
Q Consensus 71 ~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~ 128 (212)
...+|.+|+.++...... ++...++..|+..++..+-...++.+++.++-..+-.
T Consensus 33 ~r~Ltd~ev~~Va~~L~~---~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa 87 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA---RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAA 87 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH---HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 455777888888776554 3333447778888887775545888888887776643
No 201
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.96 E-value=27 Score=35.59 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 028192 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG 110 (212)
Q Consensus 73 ~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~ 110 (212)
.+++..+++++++|..+|.+..|+|...++..+++.+.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 57778999999999999999999999999999999875
No 202
>PF15325 MRI: Modulator of retrovirus infection
Probab=34.39 E-value=1.5e+02 Score=20.11 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 028192 77 DMNYELVQAC 86 (212)
Q Consensus 77 ~~~~~l~~~F 86 (212)
+.+..++++|
T Consensus 95 D~lKYVREIF 104 (106)
T PF15325_consen 95 DALKYVREIF 104 (106)
T ss_pred HHHHHHHHHh
Confidence 3344555555
No 203
>KOG3095 consensus Transcription initiation factor IIE, beta subunit [Transcription]
Probab=34.28 E-value=2.6e+02 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHH
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVF 171 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l 171 (212)
.-.....+..+.+.+|. -|.|...+|+..+
T Consensus 137 ~Ird~~~Ll~llr~~~~--~~GI~v~DL~d~~ 166 (284)
T KOG3095|consen 137 NIRDKKQLLKLLRKHDT--LGGILVSDLKDAW 166 (284)
T ss_pred ccCCHHHHHHHHHhcCc--cCceehHHhhhcc
Confidence 44556677788888876 6778888888765
No 204
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=34.05 E-value=57 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALLIR 108 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l~~ 108 (212)
+.-+++.||.+++|.|..-.++.+|..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 445567889999999999988888754
No 205
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.03 E-value=2.8e+02 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 028192 79 NYELVQACKLLDRDNDGVVLRSELEALLIR 108 (212)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 108 (212)
.+.++.+-+.+|-|.+|.|+.+|--.+|+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 356777788999999999999988888864
No 206
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=33.97 E-value=77 Score=24.16 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=23.8
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 90 D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
.-|.+|++..+||...+..-+.. ++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~-~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW-VTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT---HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC-CCHHHHHHHHhhCC
Confidence 45789999999999999876665 78899999887643
No 207
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=33.67 E-value=3.1e+02 Score=23.55 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=59.9
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCC------CCHH----HHHHHHHhhcCCCCcccccC---------CC--CCCC
Q 028192 85 ACKLLDRDNDGVVLRSELEALLIRLGADP------PTQE----EVKSMLSEVDREGDGRVGNS---------SC--EPAC 143 (212)
Q Consensus 85 ~F~~~D~d~~G~I~~~el~~~l~~l~~~~------~s~~----~~~~l~~~~d~~~~g~i~~~---------e~--~~~~ 143 (212)
+|..+|.+....++.+|...++..+|+.. .+.. .+..++..++..+..-|=+. .+ ....
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n 241 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYAN 241 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccC
Confidence 35555566678999999999999888742 1222 45566667765543223221 01 3355
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHH
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 183 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~ 183 (212)
..++..+|+.+-.-+-+++...=++.+++..-. ..++++
T Consensus 242 ~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~-~~~~~e 280 (374)
T TIGR01209 242 INDIKYAARYFFELGRDFFFSRILREAFQSYEF-GEKGEE 280 (374)
T ss_pred hHHHHHHHhhccccCchHHHHHHHHHHHHHHHh-CCchHH
Confidence 667888887776666677777777777665432 345444
No 208
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.37 E-value=56 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=12.6
Q ss_pred CCCCccCHHHHHHHHHH
Q 028192 157 DHDGKITAEELFGVFTK 173 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~ 173 (212)
-..|++..+||..++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 35678888888888754
No 209
>PF13551 HTH_29: Winged helix-turn helix
Probab=33.33 E-value=1.5e+02 Score=19.69 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-H-HhCCCCCCHHHHHHHHHh
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALL-I-RLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l-~-~l~~~~~s~~~~~~l~~~ 125 (212)
+++++.+.+.+.+.....++.+..+..++...| . ..+.. ++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~-~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGID-VSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCcc-CCHHHHHHHHHH
Confidence 555788888888876555433568889998865 3 34555 888888888765
No 210
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=33.18 E-value=1.8e+02 Score=22.68 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=22.3
Q ss_pred CCCCccCHHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCCCCc
Q 028192 157 DHDGKITAEELFGVFTKL--GDELCTLDDCRGMIALVDKNGDG 197 (212)
Q Consensus 157 d~~G~I~~~El~~~l~~~--g~~~ls~~~~~~l~~~~d~~~dg 197 (212)
...|.|+..|+...+... |.+.++++++...++.+..-+.|
T Consensus 109 ~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 109 KNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp TTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred cCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 334566666666666654 33456666666666666544433
No 211
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=33.07 E-value=1.5e+02 Score=19.75 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCC
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHD 159 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~ 159 (212)
+.++.+|..+ .|.+|.++...|..+|+. +..+-..+... .+| .. .+..++..|... ...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d----------~lqip~~vgE~----~aF---g~-~e~sv~sCF~~~--~~~ 61 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD----------VLQIPRAVGEG----PAF---GY-IEPSVRSCFQQV--QLS 61 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH----------HHHHHHHTT-G----GGG---T---HHHHHHHHHHT--TT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH----------HHHHHHHhCcc----ccc---cC-cHHHHHHHhccc--CCC
Confidence 5678889888 678999999999999963 33444433221 122 22 566777888776 245
Q ss_pred CccCHHHHHHHHHH
Q 028192 160 GKITAEELFGVFTK 173 (212)
Q Consensus 160 G~I~~~El~~~l~~ 173 (212)
-.|+.++|..-|..
T Consensus 62 ~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 62 PKITENQFLDWLMS 75 (90)
T ss_dssp S-B-HHHHHHHHHT
T ss_pred CccCHHHHHHHHHh
Confidence 57888888887754
No 212
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.45 E-value=1.2e+02 Score=18.84 Aligned_cols=32 Identities=16% Similarity=0.530 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 94 ~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
+-.|+.+-++..+...|.. +++..++.++...
T Consensus 29 NPpine~mir~M~~QMG~k-pSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRK-PSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 3369999999999999998 9999999998765
No 213
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=32.37 E-value=1.5e+02 Score=23.75 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR 128 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~ 128 (212)
..++..|++.++.++..++.+ +|.++..++..-+ | .+...+.+.+..+..
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl---G---VSRs~ireAlrkLE~ 224 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV---G---ITRSVIVNALRKLES 224 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH---C---CCHHHHHHHHHHHHH
Confidence 345667777777777777653 5777777776655 3 556666666666543
No 214
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=32.29 E-value=1.4e+02 Score=20.82 Aligned_cols=41 Identities=12% Similarity=0.405 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 192 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d 192 (212)
+.+..++..|. ...-.|+.+||.++| .+|.-.+..+++.+.
T Consensus 4 ~~y~~L~~~~~-~~~~~vtl~elA~~l------~cS~Rn~r~lLkkm~ 44 (115)
T PF12793_consen 4 EQYQRLWQHYG-GQPVEVTLDELAELL------FCSRRNARTLLKKMQ 44 (115)
T ss_pred HHHHHHHHHcC-CCCcceeHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 34556666776 666789999999998 589999999998874
No 215
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=32.18 E-value=2e+02 Score=24.84 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHhc---------------CCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcc---cc
Q 028192 74 ISLDMNYELVQACKLLD---------------RDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGR---VG 135 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D---------------~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~---i~ 135 (212)
|+++....+.++...|- ++..|+|+..-+..+-..+++...--..+-.++..|....-|+ |-
T Consensus 15 f~~e~~~~i~~ii~~yp~~~~~salIplL~~~Qe~~GyIp~~ai~~VAe~Lgvp~~~V~eVATFYtmF~~~P~Gk~~~I~ 94 (400)
T PRK12373 15 FTPENAAWAEKQITKYPEGRQASAVIPLLMRAQEQEGWVTRAAIEKVADMLDMAYIRVLEVATFYTQFQLQPVGTRAHIQ 94 (400)
T ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhcccccCCCCceEEE
Confidence 55555555555555552 1335899999888888888864223345666677776665564 22
Q ss_pred cCC---CCCCChhHHHHHHH-hh-----cCCCCCccCHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHhc
Q 028192 136 NSS---CEPACEPELKETFD-FF-----DADHDGKITAEELFGVFTKLG-----------DELCTLDDCRGMIALVD 192 (212)
Q Consensus 136 ~~e---~~~~~~~~l~~~F~-~~-----D~d~~G~I~~~El~~~l~~~g-----------~~~ls~~~~~~l~~~~d 192 (212)
.-. +...-.+++..+++ .+ ....||.+++++..++ -.|+ +++++.+.+.+|+..+-
T Consensus 95 VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCL-GaC~~APv~~Ind~~y~~LTpe~v~~IL~~l~ 170 (400)
T PRK12373 95 VCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECL-GACVNAPMVQIGKDYYEDLTPERLEEIIDAFA 170 (400)
T ss_pred EcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEECCEEeCCCCHHHHHHHHHHHh
Confidence 221 12222334444443 22 3456888888877643 2221 13689999999998874
No 216
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=32.16 E-value=95 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=28.3
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 90 D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
.-|.+|++..++|...++.-+.. .+.+++.++...-
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~-~t~~~l~~vV~~d 62 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKW-VTRELLEAVVESD 62 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCC-CCHHHHHHHHHcC
Confidence 34789999999999998755443 8889998888653
No 217
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=32.10 E-value=97 Score=26.03 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 159 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 159 ~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
.|.||++|-...+...-. ...++.++.+++.++ |+-+||..++
T Consensus 300 ~G~itReeal~~v~~~d~-~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDG-EFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcc-cccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 355555555555555321 344455555555553 4446666554
No 218
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.47 E-value=69 Score=27.59 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHH
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFS 205 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~ 205 (212)
...++|..+.. -+|+|+-.--+.-|..- .+....+-++++..|.|.||.++-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~s---klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKS---KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhc---cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 34566766654 45777766555444332 4777888999999999999999999996
No 219
>PHA02943 hypothetical protein; Provisional
Probab=31.23 E-value=2.2e+02 Score=21.13 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC------cccccCCCCC-----C
Q 028192 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGD------GRVGNSSCEP-----A 142 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~------g~i~~~e~~~-----~ 142 (212)
.|....+++.++...+ ..|.-+..|+...| | .+..+++.++..+..+|- |...+..... .
T Consensus 5 ~sd~v~~R~~eILE~L---k~G~~TtseIAkaL---G---lS~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day~~~ 75 (165)
T PHA02943 5 MSDTVHTRMIKTLRLL---ADGCKTTSRIANKL---G---VSHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAYTNL 75 (165)
T ss_pred hhHHHHHHHHHHHHHH---hcCCccHHHHHHHH---C---CCHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHHHHH
Confidence 3445567777777777 57778888887776 3 788889988888876652 2222221111 1
Q ss_pred ChhHHHHHHHhhcCCCCCccCHHHHHHHHH
Q 028192 143 CEPELKETFDFFDADHDGKITAEELFGVFT 172 (212)
Q Consensus 143 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~ 172 (212)
-.+-++++++.+-.++-.+|+...|..++.
T Consensus 76 v~~~~Relwrlv~s~~~kfi~p~~l~~li~ 105 (165)
T PHA02943 76 VFEIKRELWRLVCNSRLKFITPSRLLRLIA 105 (165)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHH
Confidence 223445566666677777888888877763
No 220
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=30.98 E-value=89 Score=22.45 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=31.7
Q ss_pred hhcCCCCCccCHHHHHHHHHHhCCC---------------CCCHHHHHHHHH-----HhcCCCCc-ceeHHHHHHHHHhC
Q 028192 153 FFDADHDGKITAEELFGVFTKLGDE---------------LCTLDDCRGMIA-----LVDKNGDG-FVCFEDFSRMMELQ 211 (212)
Q Consensus 153 ~~D~d~~G~I~~~El~~~l~~~g~~---------------~ls~~~~~~l~~-----~~d~~~dg-~I~~~eF~~~l~~~ 211 (212)
-+...|...|...||+++|..+|+. ..+..++..-+. .++.+-.- ..+.+|+...+..+
T Consensus 10 GINVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~n 89 (137)
T PF08002_consen 10 GINVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAAN 89 (137)
T ss_dssp S-SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT-
T ss_pred ceecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHHC
Confidence 3455666789999999999998762 244455443332 33333222 37888888888765
Q ss_pred C
Q 028192 212 R 212 (212)
Q Consensus 212 ~ 212 (212)
|
T Consensus 90 P 90 (137)
T PF08002_consen 90 P 90 (137)
T ss_dssp -
T ss_pred C
Confidence 4
No 221
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=30.88 E-value=75 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028192 161 KITAEELFGVFTKLGDELCTLDDCRGMI 188 (212)
Q Consensus 161 ~I~~~El~~~l~~~g~~~ls~~~~~~l~ 188 (212)
.|+.++|..+|+...- .++.+++....
T Consensus 29 ~it~~DF~~Al~~~kp-SVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKP-SVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGG-SS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence 4899999999999884 78988887654
No 222
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=30.43 E-value=2e+02 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=32.8
Q ss_pred hHHHHHHHhh-cCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 028192 145 PELKETFDFF-DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL 190 (212)
Q Consensus 145 ~~l~~~F~~~-D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~ 190 (212)
+-+..+|+.| |.+.+-..+.+++..-|...|+ .+++|.+.+.-
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF---~~~eI~~Al~W 46 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAGF---EDEEINKALDW 46 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcCC---CHHHHHHHHHH
Confidence 3567788776 4445778899999999999996 77777776543
No 223
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.31 E-value=47 Score=33.95 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=44.9
Q ss_pred CCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC----CCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 140 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDE----LCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 140 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~----~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
...+.+++.+++..||++..|+|...++..+++.+... ...+. +.+-..+..+.+|.|++.+=+..|
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFAL 1482 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHH
Confidence 45667889999999999999999999999999986321 11121 222223344456666666554444
No 224
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=29.93 E-value=60 Score=19.93 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC
Q 028192 147 LKETFDFFDADHDGKITAEELFGVFTKLGDELC 179 (212)
Q Consensus 147 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~l 179 (212)
+.++++.++.+....|+.+|..+-+...|.+.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l 38 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPNEL 38 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSST
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccccc
Confidence 455666666556666777777777777775444
No 225
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=29.58 E-value=2.5e+02 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCC
Q 028192 146 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 195 (212)
Q Consensus 146 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~ 195 (212)
.+...+.+||..++|.|..-+|+-.+-.+.. ...++....||..+...+
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASST 519 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCch
Confidence 5577889999999999999999988887753 456677778999885443
No 226
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=29.42 E-value=96 Score=22.84 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=35.8
Q ss_pred hhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHH
Q 028192 144 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFE 202 (212)
Q Consensus 144 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~ 202 (212)
.+.++.++.... ..|++...++...| ++++.-+.+|++.+. ..|.|.|+
T Consensus 9 edYL~~Iy~l~~--~~~~~~~~diA~~L------~Vsp~sVt~ml~rL~--~~GlV~~~ 57 (154)
T COG1321 9 EDYLETIYELLE--EKGFARTKDIAERL------KVSPPSVTEMLKRLE--RLGLVEYE 57 (154)
T ss_pred HHHHHHHHHHHh--ccCcccHHHHHHHh------CCCcHHHHHHHHHHH--HCCCeEEe
Confidence 445666666665 77899999999888 478888888998874 34555553
No 227
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=29.28 E-value=30 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 028192 82 LVQACKLLDRDNDGVVLRSELEALL 106 (212)
Q Consensus 82 l~~~F~~~D~d~~G~I~~~el~~~l 106 (212)
....|...|.|+||+|...|+..++
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 4566888999999999999998776
No 228
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=29.16 E-value=2e+02 Score=20.03 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
.+|.+.-..++..+|.+++..+|...|. .+....+..+++.+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGv-evd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGA-DADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCC-cccHHHHHHHHHHH
Confidence 4555555567778999999999999997 57777777777776
No 229
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.94 E-value=2e+02 Score=20.55 Aligned_cols=52 Identities=25% Similarity=0.246 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREG 130 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~ 130 (212)
..+|+++.+++...--.+-+ .+|.++..++.... | .+...+..++..+-..|
T Consensus 3 ~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~T---G---asR~Tvk~~lreLVa~G 54 (127)
T PF06163_consen 3 RVFTPEEREELKARIVELVR-EHGRITIKQLVAKT---G---ASRNTVKRYLRELVARG 54 (127)
T ss_pred CcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHH---C---CCHHHHHHHHHHHHHcC
Confidence 45788888888766555544 37889998887766 2 66778888887765444
No 230
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=28.78 E-value=1.1e+02 Score=22.45 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 028192 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (212)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 109 (212)
..+..|.+....+|..+.+||+..||+.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 567788888888899888899999998876543
No 231
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=28.76 E-value=1.7e+02 Score=21.93 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhcC-------------CCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC-
Q 028192 74 ISLDMNYELVQACKLLDR-------------DNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC- 139 (212)
Q Consensus 74 ~t~~~~~~l~~~F~~~D~-------------d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~- 139 (212)
++++.++++.++...+.. +.-|+|+.+-+..+-..+|+.+..-..+-.++..|.....|+-...-.
T Consensus 16 ~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~P~Gk~~I~VC~ 95 (169)
T PRK07571 16 SGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVVCT 95 (169)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHccccCcCCCCCEEEEEcC
Confidence 344555555555555432 234788888888887777753111233444444454433343222211
Q ss_pred ----CCCChhHHHHHHHhh------cCCCCCccCHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHh
Q 028192 140 ----EPACEPELKETFDFF------DADHDGKITAEELFGVFTKLGD-----------ELCTLDDCRGMIALV 191 (212)
Q Consensus 140 ----~~~~~~~l~~~F~~~------D~d~~G~I~~~El~~~l~~~g~-----------~~ls~~~~~~l~~~~ 191 (212)
...-.+++...++.. ....||.++.+.... |-.++. .+++.+.+.+++..+
T Consensus 96 g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~C-lG~C~~AP~~~Vn~~~~~~lt~e~v~~il~~~ 167 (169)
T PRK07571 96 GTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARC-LGACGIAPAVVFDGKVAGKQTPESVLEKVQGW 167 (169)
T ss_pred ChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecc-cCccCCCCeEEECCEEeCCCCHHHHHHHHHHH
Confidence 112223444444332 346678777765542 222211 258888888888766
No 232
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=28.52 E-value=40 Score=22.58 Aligned_cols=8 Identities=50% Similarity=0.331 Sum_probs=3.5
Q ss_pred CCcceeHH
Q 028192 195 GDGFVCFE 202 (212)
Q Consensus 195 ~dg~I~~~ 202 (212)
-||.++-.
T Consensus 90 aDG~~~~~ 97 (111)
T cd07176 90 ADGEVDPE 97 (111)
T ss_pred ccCCCCHH
Confidence 34444443
No 233
>PHA02105 hypothetical protein
Probab=28.45 E-value=1.4e+02 Score=18.05 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=29.0
Q ss_pred ccCHHHHHHHHHHhCC--CCCCHHHHHHHHHHhcCC--CCcceeHHHHHHHH
Q 028192 161 KITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKN--GDGFVCFEDFSRMM 208 (212)
Q Consensus 161 ~I~~~El~~~l~~~g~--~~ls~~~~~~l~~~~d~~--~dg~I~~~eF~~~l 208 (212)
+++.+|++.++..-.. -.+..+.++.+-..+..- +--.++|+||-.+|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 4778888888776421 145555566554444333 23458999987665
No 234
>PRK00523 hypothetical protein; Provisional
Probab=27.79 E-value=1.6e+02 Score=18.70 Aligned_cols=32 Identities=16% Similarity=0.507 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 94 ~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
+-.|+.+-++..+...|.. +++..+++++...
T Consensus 37 NPpine~mir~M~~QMGqK-PSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRK-PSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 3469999999999999998 9999999998876
No 235
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=27.75 E-value=86 Score=19.39 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeH
Q 028192 151 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCF 201 (212)
Q Consensus 151 F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~ 201 (212)
|+.|..+..+.++..|+..+..-+....++.+.+..++..+-.+ |+.++
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~--~~~~~ 50 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSN--NKANY 50 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCH
Confidence 44555555557777777666654432235677788777765332 44554
No 236
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.75 E-value=1.3e+02 Score=20.88 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 163 TAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 163 ~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
+.+|++.++..... .++++++++|+..+
T Consensus 80 ~~dElrai~~~~~~-~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERY-TLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhcc-CCCHHHHHHHHHHH
Confidence 45666666666643 56777777766554
No 237
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=27.23 E-value=1.7e+02 Score=18.95 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 158 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
+.|.|+.++...+.. +..+.+...+|+..+. ..|...|.-|++.|+.
T Consensus 26 ~~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e 72 (82)
T cd08330 26 GKKVITQEQYSEVRA----EKTNQEKMRKLFSFVR--SWGASCKDIFYQILRE 72 (82)
T ss_pred HCCCCCHHHHHHHHc----CCCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Confidence 456888887777664 2346677788887764 3577888889888863
No 238
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.00 E-value=2e+02 Score=19.19 Aligned_cols=50 Identities=20% Similarity=0.048 Sum_probs=24.9
Q ss_pred ccCHHHHHHHHHHhCCCCCCHHHHH---HHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 161 KITAEELFGVFTKLGDELCTLDDCR---GMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 161 ~I~~~El~~~l~~~g~~~ls~~~~~---~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
.++.+|+..++..++. . .++.+. ..++..+.+....++.+|++++|..+|
T Consensus 35 ~~~~~~l~~~~~~~~~-~-~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p 87 (105)
T cd02977 35 PPTKEELKELLAKLGL-G-VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHP 87 (105)
T ss_pred CCCHHHHHHHHHhcCC-C-HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCc
Confidence 4566667666666652 1 111111 122333222234567777877777654
No 239
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.31 E-value=78 Score=16.41 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=2.9
Q ss_pred CHHHHHHH
Q 028192 180 TLDDCRGM 187 (212)
Q Consensus 180 s~~~~~~l 187 (212)
+.+++.+.
T Consensus 18 s~eeir~F 25 (30)
T PF08671_consen 18 SKEEIREF 25 (30)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 44444433
No 240
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=26.29 E-value=1e+02 Score=19.10 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 028192 150 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDK 193 (212)
Q Consensus 150 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~ 193 (212)
+|+.|-....|.++..|...+..-+....++++.+..++..+-.
T Consensus 1 ~~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~ 44 (77)
T PF07261_consen 1 LFEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE 44 (77)
T ss_dssp HHHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46667777778999998888877776335788888888877653
No 241
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.75 E-value=1.3e+02 Score=18.29 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=14.6
Q ss_pred CccCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 028192 160 GKITAEELFGVFTKLGDELCTLDDCRGMIALV 191 (212)
Q Consensus 160 G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~ 191 (212)
..++.+|...++..+-...+++.++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35666666666666522245666655555444
No 242
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=25.63 E-value=2.3e+02 Score=19.45 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 97 VLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 97 I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
|+.+++..+|...|.. +....+..++..+
T Consensus 17 ~ta~~I~~IL~aaGve-Ve~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAE-IEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCC-cCHHHHHHHHHHH
Confidence 9999999999999997 8888888888776
No 243
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=25.60 E-value=1.6e+02 Score=19.11 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 178 LCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 178 ~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.+.++..+.+-+.++.-.+.-|+|+|.+.|..
T Consensus 45 ~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 45 QIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56666666665655555566789999888765
No 244
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=25.43 E-value=1.7e+02 Score=24.31 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=39.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028192 70 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (212)
Q Consensus 70 ~~~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~ 125 (212)
....||..++.+|...|... -||+..|=..+-..|| +++.+|+..|..
T Consensus 175 sRTaFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~Lg---LTdaQVKtWfQN 222 (309)
T KOG0488|consen 175 SRTAFSDHQLFELEKRFEKQ-----KYLSVADRIELAASLG---LTDAQVKTWFQN 222 (309)
T ss_pred chhhhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHcC---CchhhHHHHHhh
Confidence 35679999999999999863 3899988888877887 778888887765
No 245
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=24.98 E-value=1.9e+02 Score=24.46 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCcccccC--------CCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHH------H
Q 028192 119 VKSMLSEVDREGDGRVGNS--------SCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD------C 184 (212)
Q Consensus 119 ~~~l~~~~d~~~~g~i~~~--------e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~------~ 184 (212)
+..++..+|..+.|.+.-- ...+.-.+.++.+|..+. |.+|.+..-.+.+++...-. ..+... .
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evls-lpT~v~e~psfg~ 189 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS-LPTAVFEGPSFGY 189 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc-CCchhhcCCCcch
Q ss_pred HHHHHHhcCCCCcceeHHHHHHHHHhCC
Q 028192 185 RGMIALVDKNGDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 185 ~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 212 (212)
.+.......-.+.+|.++.|+..|+..|
T Consensus 190 te~~a~~cf~qqrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 190 TELSARLCFLQQRKVELNQFLDTLMSDP 217 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 246
>PLN02228 Phosphoinositide phospholipase C
Probab=24.61 E-value=4.6e+02 Score=23.96 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcC
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDR 128 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~-~~s~~~~~~l~~~~d~ 128 (212)
.++..+|..+-. ++.|+.++|..+|...... ..+...+..++..+..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~ 71 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKH 71 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence 345566666643 3589999999999887542 2456778888887754
No 247
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=24.33 E-value=1.4e+02 Score=26.49 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=41.1
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCCHHHHHHHHH---HhcC-----CCCcceeHHHHHHHHH
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIA---LVDK-----NGDGFVCFEDFSRMME 209 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~---~~d~-----~~dg~I~~~eF~~~l~ 209 (212)
.+|..|-....+.|...-|..+|+..|. .-++--+..|+. .++. ...+.++-+.|.+++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGL-rtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGL-RTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCC-CcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4677776666789999999999999997 345544555543 3332 1345688888888763
No 248
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.16 E-value=90 Score=16.32 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=10.0
Q ss_pred CCccCHHHHHHHHHH
Q 028192 159 DGKITAEELFGVFTK 173 (212)
Q Consensus 159 ~G~I~~~El~~~l~~ 173 (212)
.|.|+.+|+..++..
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777766654
No 249
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=24.06 E-value=91 Score=29.88 Aligned_cols=10 Identities=50% Similarity=0.478 Sum_probs=4.6
Q ss_pred CcccCCCCCC
Q 028192 22 TSVSRSDPSS 31 (212)
Q Consensus 22 ~~~~~s~~~s 31 (212)
++..||..+|
T Consensus 1811 isagrsssss 1820 (2033)
T PHA03309 1811 ISAGRSSSSS 1820 (2033)
T ss_pred eecCcccCcc
Confidence 3445554444
No 250
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.05 E-value=4.8e+02 Score=22.69 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=54.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCC-----CChhHHHHHHHhhcCCCCC---ccCHH
Q 028192 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEP-----ACEPELKETFDFFDADHDG---KITAE 165 (212)
Q Consensus 94 ~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~-----~~~~~l~~~F~~~D~d~~G---~I~~~ 165 (212)
...+.+.+|.++|...... .+--++..+-..+|...++.|+-=||.. .....+..-|+.+..-.-| ++|.+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi-~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPI-SSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred cccccHHHHHHHHHhcCCC-cchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHH
Confidence 3478999999999988754 4456677777778888888887555522 2223344445555555555 57899
Q ss_pred HHHHHHHHh
Q 028192 166 ELFGVFTKL 174 (212)
Q Consensus 166 El~~~l~~~ 174 (212)
|++.-|+.+
T Consensus 267 EVk~RLqk~ 275 (563)
T KOG1785|consen 267 EVKARLQKY 275 (563)
T ss_pred HHHHHHHHH
Confidence 999988874
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.98 E-value=1.8e+02 Score=28.09 Aligned_cols=44 Identities=9% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHhC
Q 028192 164 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 211 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 211 (212)
.+.|..++..+. ...++++||..+..++.-+++.++|++||..+
T Consensus 207 ~e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 207 LEKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKK 250 (1189)
T ss_pred HHHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhh
Confidence 334444444333 33679999999988888899999999999754
No 252
>PRK10356 hypothetical protein; Provisional
Probab=23.97 E-value=3.1e+02 Score=22.39 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028192 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSML 123 (212)
Q Consensus 72 ~~~t~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~ 123 (212)
..++.++...+..++..+.-.-++.....++..+|.++++.|++.-.++.+.
T Consensus 109 ~~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiIP~slvlAQAAl 160 (274)
T PRK10356 109 GQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA 160 (274)
T ss_pred cCCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcCCHHHHHHHHHH
Confidence 3467788888888888887764555566677888888888744433334433
No 253
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=23.04 E-value=2.6e+02 Score=19.26 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028192 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (212)
Q Consensus 96 ~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d 127 (212)
.|+.+++..+|...|.. +....+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGve-Vee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVE-VDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHc
Confidence 79999999999999997 88888888887764
No 254
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.02 E-value=1.2e+02 Score=22.34 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.8
Q ss_pred hHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 145 PELKETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 145 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
..+..-....|..+.++||..||+.++..+
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 455566777788888899999999888764
No 255
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=22.96 E-value=2.3e+02 Score=18.64 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHHHh
Q 028192 158 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 210 (212)
Q Consensus 158 ~~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l~~ 210 (212)
++|+|+.+|...+.. +..+.+.+.+++..+ -..|....+-|+.+|+.
T Consensus 26 ~n~~it~E~y~~V~a----~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e 72 (85)
T cd08324 26 KNDYFSTEDAEIVCA----CPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQ 72 (85)
T ss_pred ccCCccHHHHHHHHh----CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHH
Confidence 456777777765542 234566666666664 23455566666666653
No 256
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=22.94 E-value=1.9e+02 Score=22.63 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=40.4
Q ss_pred CCCCCChhHHHHHHHhhcCCCCCccCHHHHHHHHHH----hCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 138 SCEPACEPELKETFDFFDADHDGKITAEELFGVFTK----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 138 e~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~----~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
+|.......+..+...|+.--- .=..++|.++|.. +.....+++++.+.++.+..+.-..| |+++.+||
T Consensus 133 eF~~l~~~~l~~L~~FYellpp-~~e~e~~~~~Le~~~e~~~i~~~~d~~i~~~~k~~s~~eld~i-fdelARyl 205 (216)
T PF07957_consen 133 EFKNLDDVKLIKLAKFYELLPP-LKEQEEFEEFLEGKVEDFHINEESDEEIEKELKKYSKEELDEI-FDELARYL 205 (216)
T ss_pred HHHhccHHHHHHHHHHHHhcCC-cccHHHHHHHHhccccccccCCCChHHHHHHHHhcCHHHHHHH-HHHHHHHh
Confidence 4444455566666666652211 2256888888864 22234577888888877765543334 77777765
No 257
>PLN02230 phosphoinositide phospholipase C 4
Probab=22.67 E-value=2.7e+02 Score=25.58 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhh
Q 028192 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEV 126 (212)
Q Consensus 80 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~--~~s~~~~~~l~~~~ 126 (212)
.++..+|..+-.++ +.++.++|..+|...... ..+...++.++..+
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 56777888885443 799999999999987632 14567777777654
No 258
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.57 E-value=2e+02 Score=19.46 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=7.0
Q ss_pred eeHHHHHHHHHhC
Q 028192 199 VCFEDFSRMMELQ 211 (212)
Q Consensus 199 I~~~eF~~~l~~~ 211 (212)
++.++.+..|..+
T Consensus 72 ~s~~e~~~~l~~~ 84 (105)
T cd03035 72 LDAAKAIALMLEH 84 (105)
T ss_pred CCHHHHHHHHHhC
Confidence 4555555555544
No 259
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.11 E-value=1.5e+02 Score=21.61 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH----------HHhcCCCCcceeHHHHHHHH
Q 028192 167 LFGVFTKLGDELCTLDDCRGMI----------ALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 167 l~~~l~~~g~~~ls~~~~~~l~----------~~~d~~~dg~I~~~eF~~~l 208 (212)
+.+-+.++|. .++++++..++ ..+-.+..|.++...|.+||
T Consensus 95 l~~e~eklGi-~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGI-TVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCC-ccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 4444555665 46666666666 11224568888888887764
No 260
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.06 E-value=2.6e+02 Score=21.01 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCCCCCChhHHHHHHHhhcCCCC
Q 028192 98 LRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSCEPACEPELKETFDFFDADHD 159 (212)
Q Consensus 98 ~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~~~~~~~~l~~~F~~~D~d~~ 159 (212)
+..+.+.-|++.|++ ....+.+.++...-.++.|.| |..+ ..++.+...||.|++
T Consensus 3 ns~~~~~~lka~gi~-tnskqyka~~~~mm~~~~~~~-y~~~-----~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 3 NSSSVQEQLKAAGIN-TNSKQYKAVMSEMMSAGEGAM-YTNI-----QGIKNLMSQYDKDGD 57 (186)
T ss_pred ChHHHHHHHHhcCCC-cChHHHHHHHHHHhcCCCCce-eehH-----HHHHHHHHhcCCCCc
Confidence 334555556666665 444455555554444444432 1111 225555556655543
No 261
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.96 E-value=1.4e+02 Score=27.07 Aligned_cols=9 Identities=22% Similarity=0.216 Sum_probs=4.4
Q ss_pred hcCcccccc
Q 028192 6 KLSPKRLFR 14 (212)
Q Consensus 6 ~~~~~~~~~ 14 (212)
+++|++.-+
T Consensus 619 S~~pr~~~r 627 (757)
T KOG4368|consen 619 SRYPRSRSR 627 (757)
T ss_pred CcCcccccc
Confidence 344555544
No 262
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.92 E-value=1.1e+02 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.6
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHh
Q 028192 149 ETFDFFDADHDGKITAEELFGVFTKL 174 (212)
Q Consensus 149 ~~F~~~D~d~~G~I~~~El~~~l~~~ 174 (212)
.+..-+|.|++|.++.+|+..+...+
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHH
Confidence 44557899999999999999888754
No 263
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=21.75 E-value=1.5e+02 Score=22.41 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=31.2
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCC---------HHHHHHHHHHhcCCCCcceeHHHHHHHHH
Q 028192 156 ADHDGKITAEELFGVFTKLGDELCT---------LDDCRGMIALVDKNGDGFVCFEDFSRMME 209 (212)
Q Consensus 156 ~d~~G~I~~~El~~~l~~~g~~~ls---------~~~~~~l~~~~d~~~dg~I~~~eF~~~l~ 209 (212)
.||+|.+.+-=+..+|...|...+. .+.-.+.+..+..-..+ ++..|+.+++
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~p~~~~~~~~~~~~~~r~~Y~~aL~~a~~~--d~~~~~~~~~ 186 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYSPFTWGSGSLALVGDLRKEYIAALKAADRH--DYGPLLEFAR 186 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCCCccccccchhhHHhhHHHHHHHHHHHhcc--ChHHHHHHhC
Confidence 5789999988888888888863231 22233344433222233 6777777763
No 264
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=21.70 E-value=37 Score=22.70 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCcceeHHHHHHHHHhCC
Q 028192 195 GDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 195 ~dg~I~~~eF~~~l~~~~ 212 (212)
+.++|+.++|+=.|++.+
T Consensus 51 g~~~i~~eDl~F~lR~D~ 68 (93)
T PF02269_consen 51 GSKKIKVEDLLFLLRKDP 68 (93)
T ss_dssp ------------------
T ss_pred ccCcCcHHHHHHHHhcCH
Confidence 567899999988887653
No 265
>KOG2520 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=21.56 E-value=3.9e+02 Score=25.57 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCC---CCCHHHHHHHHHhhcCCCCcccccC--CCCCCC---------------hhHHHHHHHhhcCCC
Q 028192 99 RSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGRVGNS--SCEPAC---------------EPELKETFDFFDADH 158 (212)
Q Consensus 99 ~~el~~~l~~l~~~---~~s~~~~~~l~~~~d~~~~g~i~~~--e~~~~~---------------~~~l~~~F~~~D~d~ 158 (212)
..|++.+|+.+|+. .+-+.++++.+...-.=-+|.|+=+ -|+-.. .-.+..+.+.|..++
T Consensus 468 ~~e~QElL~~fGIPyI~APmEAEAQCa~Le~~~LvdGiITDDSDV~LFGg~~VYrn~F~knk~ve~y~~~di~kel~l~R 547 (815)
T KOG2520|consen 468 FKELQELLRLFGIPYIIAPMEAEAQCAFLEQLNLVDGIITDDSDVFLFGGTRVYRNFFNKNKYVEKYQLDDIEKELGLDR 547 (815)
T ss_pred HHHHHHHHHHcCCceecccccHHHHHHHHHHcCCcceeecccccceeeccchhhHHHhhcCccceeeehHHHHHHHccCc
Confidence 34788999999973 2456777777655433345555422 111111 112334445554444
Q ss_pred CCccCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCcceeHHHHHH
Q 028192 159 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 206 (212)
Q Consensus 159 ~G~I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~~dg~I~~~eF~~ 206 (212)
...|....|---=...|...+..--.-+++..+-.+ +|-+-|.+|+.
T Consensus 548 ~~lI~lA~LlGsDYt~Gl~giGpV~AlEil~Efp~~-~~l~~f~~w~~ 594 (815)
T KOG2520|consen 548 PNLISLAQLLGSDYTEGLKGIGPVSALEILAEFPGD-ENLLKFKKWVQ 594 (815)
T ss_pred hhhHHHHHhcccccccCCCcccchHHHHHHHHcCCc-chhHHHHHHHH
Confidence 444443332211122233345555567778887544 66555555554
No 266
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.28 E-value=3.3e+02 Score=19.78 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=7.3
Q ss_pred cCHHHHHHHHHHhC
Q 028192 162 ITAEELFGVFTKLG 175 (212)
Q Consensus 162 I~~~El~~~l~~~g 175 (212)
+|-+|...+|+.+|
T Consensus 43 lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 43 LTDDEARAVLARIG 56 (139)
T ss_pred CCHHHHHHHHHHHh
Confidence 45555555555543
No 267
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.03 E-value=1.7e+02 Score=16.42 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-----CCcceeHHHHHHHHHhCC
Q 028192 162 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKN-----GDGFVCFEDFSRMMELQR 212 (212)
Q Consensus 162 I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~-----~dg~I~~~eF~~~l~~~~ 212 (212)
++.+|..++| +++..-+..++..-..- +.-.++.+++.+++..++
T Consensus 2 lt~~e~a~~l------~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~~ 51 (51)
T PF12728_consen 2 LTVKEAAELL------GISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLERRR 51 (51)
T ss_pred CCHHHHHHHH------CcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHhCc
Confidence 5666776666 36787788877643221 223588899999988764
No 268
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.93 E-value=1.3e+02 Score=19.53 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH
Q 028192 165 EELFGVFTKLGDELCTLDDCRGM 187 (212)
Q Consensus 165 ~El~~~l~~~g~~~ls~~~~~~l 187 (212)
-|+-.+|+.+|. .+++++..-+
T Consensus 20 vEIL~ALrkLge-~Ls~eE~~FL 41 (78)
T PF06384_consen 20 VEILTALRKLGE-KLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHH
Confidence 356688899994 8999987654
No 269
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.76 E-value=3.5e+02 Score=19.89 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcccccCCC-----CCCChhHHHHHHHhh------cCCCCCc
Q 028192 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGRVGNSSC-----EPACEPELKETFDFF------DADHDGK 161 (212)
Q Consensus 93 ~~G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~d~~~~g~i~~~e~-----~~~~~~~l~~~F~~~------D~d~~G~ 161 (212)
..|+|+.+-+..+-..+|+.+..-..+-.++..|.....|+-...-. ...-.+++..+++.. ....||.
T Consensus 35 ~~G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f~~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ 114 (156)
T PRK05988 35 EFGYVPEDAVPVIAEALNLSRAEVHGVITFYHDFRTHPPGRHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGA 114 (156)
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCe
Confidence 35789998888888888864222244555555565544444322211 223334555555443 3466777
Q ss_pred cCHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHh
Q 028192 162 ITAEELFGVFTKLGD-----------ELCTLDDCRGMIALV 191 (212)
Q Consensus 162 I~~~El~~~l~~~g~-----------~~ls~~~~~~l~~~~ 191 (212)
++.++... |-.++. .+++.+.+.+++..+
T Consensus 115 ftL~~~~C-lG~C~~aP~~~in~~~~~~lt~~~~~~il~~~ 154 (156)
T PRK05988 115 VTLEPVYC-LGLCACSPAAMLDGEVHGRLDPQRLDALLAEA 154 (156)
T ss_pred EEEEeeee-cCccCCCCeEEECCEEeCCCCHHHHHHHHHHh
Confidence 77665542 222211 257888888887654
No 270
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.74 E-value=1.8e+02 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 028192 162 ITAEELFGVFTKLGDELCTLDDCRGMIALVD 192 (212)
Q Consensus 162 I~~~El~~~l~~~g~~~ls~~~~~~l~~~~d 192 (212)
-|..|++-+|..-+. .+++++++.|+...+
T Consensus 80 ~t~~ElRsIla~e~~-~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERV-MLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccC-CCCHHHHHHHHHHHH
Confidence 356788888877775 678888888776553
No 271
>PRK01844 hypothetical protein; Provisional
Probab=20.65 E-value=2.4e+02 Score=17.95 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028192 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (212)
Q Consensus 95 G~I~~~el~~~l~~l~~~~~s~~~~~~l~~~~ 126 (212)
--|+.+-++..+...|.. +++..+++++...
T Consensus 37 Ppine~mir~Mm~QMGqk-PSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQK-PSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 369999999999999998 9999999998876
No 272
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.56 E-value=1.4e+02 Score=19.22 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-CCcceeHHHHHHHH
Q 028192 164 AEELFGVFTKLGDELCTLDDCRGMIALVDKN-GDGFVCFEDFSRMM 208 (212)
Q Consensus 164 ~~El~~~l~~~g~~~ls~~~~~~l~~~~d~~-~dg~I~~~eF~~~l 208 (212)
.++|.++|. |. ..+.+.+.+.+..++.+ --+.++-+||+++|
T Consensus 44 i~~le~~L~--G~-~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GC-PYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TC-BSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hc-CCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 566666663 32 45778888888777544 23567778887765
No 273
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.45 E-value=2.9e+02 Score=18.80 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=9.4
Q ss_pred ccCHHHHHHHHHHhC
Q 028192 161 KITAEELFGVFTKLG 175 (212)
Q Consensus 161 ~I~~~El~~~l~~~g 175 (212)
.++.+||..++..+|
T Consensus 35 ~~t~~el~~~l~~~~ 49 (112)
T cd03034 35 PPTAAELRELLAKLG 49 (112)
T ss_pred CcCHHHHHHHHHHcC
Confidence 466666666666665
No 274
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.19 E-value=1.6e+02 Score=20.45 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHhcCCCCcceeHHHHHHHH
Q 028192 179 CTLDDCRGMIALVDKNGDGFVCFEDFSRMM 208 (212)
Q Consensus 179 ls~~~~~~l~~~~d~~~dg~I~~~eF~~~l 208 (212)
++.+|-..++..++.-.+|.|++..-+.+|
T Consensus 66 ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 66 LSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 444444444444444445555554444443
No 275
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=20.12 E-value=26 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHhhcCCCCcccccCCC
Q 028192 114 PTQEEVKSMLSEVDREGDGRVGNSSC 139 (212)
Q Consensus 114 ~s~~~~~~l~~~~d~~~~g~i~~~e~ 139 (212)
+++++++.++..+..|..|.|.|.+|
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eF 29 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEF 29 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHH
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHH
Confidence 78899999999999999999988866
Done!