BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028194
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 7/205 (3%)
Query: 4 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 62
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 63 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 120
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
R+ + L+YL+ VEEGGET+ P G+ GL VKP +GD L+FYSL P+G+
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 200
Query: 181 IDRTSLHGSCPVIKGEKWVATKWIR 205
D SLHGSCP +KG+KW ATKWI
Sbjct: 201 NDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 7/205 (3%)
Query: 4 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 62
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 73
Query: 63 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 120
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 74 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
R+ + L+YL+ VEEGGET+ P G+ GL VKP +GD L+FYSL P+G+
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 191
Query: 181 IDRTSLHGSCPVIKGEKWVATKWIR 205
D SLHGSCP +KG+KW ATKWI
Sbjct: 192 NDPASLHGSCPTLKGDKWSATKWIH 216
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 7/205 (3%)
Query: 4 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 62
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 74
Query: 63 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 120
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 75 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 132
Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
R+ + L+YL+ VEEGGET+ P G+ GL VKP +GD L+FYSL P+G+
Sbjct: 133 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 192
Query: 181 IDRTSLHGSCPVIKGEKWVATKWIR 205
D SLHGSCP +KG+KW ATKWI
Sbjct: 193 NDPASLHGSCPTLKGDKWSATKWIH 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 122/205 (59%), Gaps = 7/205 (3%)
Query: 4 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 62
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 63 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 120
ED ++ IE ++A+ T +P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
R+ + L YL+ VEEGGET+ P G+ GL VKP +GD L FYSL P+G+
Sbjct: 141 RVVTXLXYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALXFYSLKPDGS 200
Query: 181 IDRTSLHGSCPVIKGEKWVATKWIR 205
D SLHGSCP +KG+KW ATKWI
Sbjct: 201 NDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 29/208 (13%)
Query: 1 MQVLS--WRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGT 58
+Q++S P + N S E+C +I +K +L S++ + RTSSG
Sbjct: 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVG-----SSRDVNDIRTSSGA 84
Query: 59 FISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG-PQ 117
F+ +E + IE +I+ +P +HGE ++L YE+ Q+Y +HYD F AE+
Sbjct: 85 FLDDNE----LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYF--AEHSRSA 138
Query: 118 MSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFP 177
+ R+++ + YL+DVEEGGET FP + L V PR+G + F +
Sbjct: 139 ANNRISTLVXYLNDVEEGGETFFP---------------KLNLSVHPRKGXAVYFEYFYQ 183
Query: 178 NGTIDRTSLHGSCPVIKGEKWVATKWIR 205
+ +++ +LHG PV KGEKW+AT+W+R
Sbjct: 184 DQSLNELTLHGGAPVTKGEKWIATQWVR 211
>pdb|4IFA|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of An
Extracellular Protein Containing A Scp Domain From
Bacillus Anthracis Str. Ames
Length = 339
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 79 RATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGET 138
R + GE V Y I +KY+ Y NP + + + S+ LSD E +
Sbjct: 99 RKVVTAYVAGEQVKVPPYYINEKYEDVYKK-NPLSHEISLKRGKNSYQFELSDTEVXEQP 157
Query: 139 MFPFENG 145
+ P E+G
Sbjct: 158 LVPVEDG 164
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 114 YGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLL 171
Y + Q+L + +++ + EE P+ FLD G D + CI L +P GLL
Sbjct: 452 YTNEKLQQLFNHTMFVLEQEEYQREGIPW---TFLDFGLDLQPCIDLIERPANPPGLL 506
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,640,603
Number of Sequences: 62578
Number of extensions: 270137
Number of successful extensions: 486
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 7
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)