Query 028194
Match_columns 212
No_of_seqs 147 out of 1173
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 3E-57 6.5E-62 379.8 20.2 205 1-209 47-255 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 4.8E-52 1E-56 344.3 15.3 195 1-210 90-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 2.8E-39 6E-44 253.7 17.4 175 8-205 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 3.2E-32 6.9E-37 219.1 14.3 169 9-210 1-182 (226)
5 PHA02813 hypothetical protein; 99.8 3.6E-19 7.9E-24 149.0 12.0 138 32-202 35-178 (354)
6 PHA02869 C4L/C10L-like gene fa 99.8 2.9E-19 6.2E-24 151.5 10.2 135 33-202 45-187 (418)
7 COG3128 PiuC Uncharacterized i 99.8 4.4E-18 9.5E-23 130.3 10.2 168 8-209 2-184 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.8 1.2E-18 2.7E-23 123.9 6.1 96 91-205 1-100 (100)
9 KOG3710 EGL-Nine (EGLN) protei 99.4 6.6E-12 1.4E-16 99.4 11.7 169 9-207 54-240 (280)
10 COG3751 EGL-9 Predicted prolin 99.0 9E-09 1.9E-13 84.0 11.6 104 90-211 137-245 (252)
11 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.8 4.1E-09 9E-14 70.0 4.4 53 87-143 9-65 (70)
12 PF03336 Pox_C4_C10: Poxvirus 98.8 2.7E-08 5.7E-13 83.8 8.9 124 50-201 38-164 (339)
13 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.7 1.1E-08 2.4E-13 72.1 4.2 90 89-205 2-97 (98)
14 KOG3844 Predicted component of 98.2 1.8E-05 4E-10 67.9 11.4 165 10-208 38-219 (476)
15 TIGR02408 ectoine_ThpD ectoine 98.2 3.2E-05 7E-10 64.8 12.1 182 9-205 29-248 (277)
16 PF13759 2OG-FeII_Oxy_5: Putat 98.1 6.8E-06 1.5E-10 58.4 5.8 89 93-201 4-99 (101)
17 PHA02866 Hypothetical protein; 98.1 1E-05 2.2E-10 66.9 7.1 104 68-201 59-164 (333)
18 PF09859 Oxygenase-NA: Oxygena 97.9 4.1E-05 8.9E-10 58.3 6.4 101 91-206 64-172 (173)
19 PF05721 PhyH: Phytanoyl-CoA d 97.8 8E-05 1.7E-09 58.4 7.3 174 9-195 5-206 (211)
20 TIGR02466 conserved hypothetic 97.7 0.00014 3E-09 58.1 7.6 90 91-200 98-194 (201)
21 TIGR01762 chlorin-enz chlorina 97.6 0.0015 3.1E-08 55.2 12.4 179 9-206 15-249 (288)
22 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.5 0.00077 1.7E-08 53.1 8.9 157 10-195 2-177 (194)
23 PF12851 Tet_JBP: Oxygenase do 97.4 0.00066 1.4E-08 52.9 7.1 79 101-205 86-170 (171)
24 PRK15401 alpha-ketoglutarate-d 96.8 0.077 1.7E-06 42.8 13.5 157 6-195 16-196 (213)
25 PHA02923 hypothetical protein; 96.1 0.015 3.2E-07 48.6 5.6 97 68-202 44-142 (315)
26 KOG3200 Uncharacterized conser 94.8 0.081 1.7E-06 41.0 5.5 96 3-109 7-108 (224)
27 COG3145 AlkB Alkylated DNA rep 94.8 1.3 2.8E-05 35.2 12.3 83 70-173 87-170 (194)
28 PLN03001 oxidoreductase, 2OG-F 94.4 0.24 5.3E-06 41.2 8.0 86 90-205 117-212 (262)
29 PLN02984 oxidoreductase, 2OG-F 94.4 0.33 7.2E-06 42.0 9.2 87 90-206 201-298 (341)
30 COG3826 Uncharacterized protei 93.9 0.25 5.3E-06 38.7 6.4 102 90-206 125-234 (236)
31 PLN02485 oxidoreductase 93.8 0.4 8.6E-06 41.2 8.4 89 90-206 185-287 (329)
32 PF06822 DUF1235: Protein of u 93.5 0.44 9.6E-06 39.4 7.6 103 65-201 30-132 (266)
33 KOG0143 Iron/ascorbate family 92.7 0.83 1.8E-05 39.2 8.6 88 90-205 177-274 (322)
34 PLN00417 oxidoreductase, 2OG-F 92.6 0.79 1.7E-05 39.7 8.4 87 90-205 204-300 (348)
35 PLN02904 oxidoreductase 92.3 0.97 2.1E-05 39.3 8.7 86 90-205 209-304 (357)
36 PLN02912 oxidoreductase, 2OG-F 92.2 0.73 1.6E-05 40.0 7.7 87 90-206 198-294 (348)
37 PLN02639 oxidoreductase, 2OG-F 92.1 1.1 2.4E-05 38.6 8.8 87 90-205 191-287 (337)
38 PLN02216 protein SRG1 92.1 0.88 1.9E-05 39.6 8.2 87 90-205 211-307 (357)
39 PLN02515 naringenin,2-oxogluta 92.1 0.92 2E-05 39.5 8.2 89 90-206 196-294 (358)
40 PLN02947 oxidoreductase 92.1 1.3 2.8E-05 38.9 9.1 86 90-205 226-321 (374)
41 PLN02997 flavonol synthase 92.0 0.47 1E-05 40.8 6.2 87 90-206 184-280 (325)
42 PLN02750 oxidoreductase, 2OG-F 91.6 1.3 2.8E-05 38.3 8.7 89 90-206 194-292 (345)
43 COG3491 PcbC Isopenicillin N s 91.6 1.2 2.5E-05 37.9 7.9 90 87-205 172-271 (322)
44 PLN02254 gibberellin 3-beta-di 91.5 1.4 3E-05 38.4 8.7 87 90-205 211-307 (358)
45 PLN02403 aminocyclopropanecarb 91.4 0.83 1.8E-05 38.8 7.1 87 91-206 155-252 (303)
46 PLN02299 1-aminocyclopropane-1 91.3 1.8 3.8E-05 37.1 9.1 87 90-205 159-255 (321)
47 PLN02758 oxidoreductase, 2OG-F 91.3 1.8 3.9E-05 37.7 9.2 87 90-205 212-309 (361)
48 PHA02985 hypothetical protein; 91.2 1.2 2.5E-05 36.8 7.3 102 64-201 36-137 (271)
49 PLN02365 2-oxoglutarate-depend 91.1 1 2.3E-05 38.1 7.4 105 74-205 129-248 (300)
50 PLN02276 gibberellin 20-oxidas 91.0 1.8 3.8E-05 37.8 8.8 86 90-205 207-302 (361)
51 PLN02704 flavonol synthase 89.6 0.83 1.8E-05 39.3 5.6 87 90-206 200-296 (335)
52 TIGR00568 alkb DNA alkylation 89.0 3.7 8.1E-05 31.8 8.3 86 68-173 74-159 (169)
53 PLN03178 leucoanthocyanidin di 88.2 2.5 5.3E-05 36.8 7.6 87 90-206 212-308 (360)
54 PF14033 DUF4246: Protein of u 87.7 2.4 5.1E-05 38.7 7.4 88 103-206 364-478 (501)
55 PTZ00273 oxidase reductase; Pr 87.4 6.5 0.00014 33.5 9.7 86 90-205 178-274 (320)
56 PLN02393 leucoanthocyanidin di 87.3 4.6 0.0001 35.2 8.8 88 90-206 214-311 (362)
57 KOG3959 2-Oxoglutarate- and ir 87.0 0.57 1.2E-05 38.1 2.7 95 8-110 72-175 (306)
58 PLN02156 gibberellin 2-beta-di 87.0 6.3 0.00014 34.0 9.3 87 90-205 179-277 (335)
59 PLN03002 oxidoreductase, 2OG-F 84.9 4.1 8.9E-05 35.0 7.2 91 90-206 183-284 (332)
60 KOG4459 Membrane-associated pr 83.3 0.21 4.5E-06 44.3 -1.4 70 119-205 364-433 (471)
61 PF02668 TauD: Taurine catabol 82.7 1.2 2.5E-05 36.2 2.8 38 158-203 219-258 (258)
62 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 82.5 1.2 2.6E-05 35.4 2.7 98 68-194 71-179 (195)
63 COG4340 Uncharacterized protei 82.1 3.6 7.8E-05 32.4 5.1 51 126-194 149-201 (226)
64 cd00250 CAS_like Clavaminic ac 78.0 2.9 6.4E-05 34.3 3.8 40 158-205 218-260 (262)
65 COG5285 Protein involved in bi 71.7 13 0.00028 31.4 5.9 83 101-196 132-220 (299)
66 cd03528 Rieske_RO_ferredoxin R 60.1 14 0.0003 25.3 3.5 48 126-195 4-51 (98)
67 PRK09965 3-phenylpropionate di 59.8 15 0.00032 25.8 3.6 49 124-195 4-52 (106)
68 cd03530 Rieske_NirD_small_Baci 56.8 17 0.00037 24.9 3.5 26 161-195 27-52 (98)
69 cd03474 Rieske_T4moC Toluene-4 53.9 19 0.00041 25.2 3.4 27 160-195 26-52 (108)
70 TIGR02410 carnitine_TMLD trime 51.9 17 0.00037 31.6 3.4 38 159-205 312-349 (362)
71 PRK09553 tauD taurine dioxygen 50.7 12 0.00026 31.2 2.2 32 103-140 95-126 (277)
72 cd03535 Rieske_RO_Alpha_NDO Ri 49.1 18 0.00039 26.2 2.7 53 123-195 3-55 (123)
73 cd04338 Rieske_RO_Alpha_Tic55 49.0 26 0.00057 25.8 3.6 64 120-205 15-81 (134)
74 KOG1971 Lysyl hydroxylase [Pos 48.5 13 0.00028 32.9 2.1 76 118-205 279-355 (415)
75 cd03542 Rieske_RO_Alpha_HBDO R 47.7 22 0.00047 25.9 2.9 51 125-195 3-53 (123)
76 PF00355 Rieske: Rieske [2Fe-2 47.1 28 0.00061 23.6 3.3 30 158-196 25-54 (97)
77 TIGR02409 carnitine_bodg gamma 46.6 23 0.00049 30.8 3.4 39 159-205 313-353 (366)
78 cd04337 Rieske_RO_Alpha_Cao Ca 45.6 32 0.00069 25.2 3.6 55 120-195 15-69 (129)
79 PF05118 Asp_Arg_Hydrox: Aspar 44.5 66 0.0014 24.5 5.3 77 89-201 80-156 (163)
80 cd03472 Rieske_RO_Alpha_BPDO_l 43.5 24 0.00051 25.9 2.6 55 121-195 7-61 (128)
81 PF10637 Ofd1_CTDD: Oxoglutara 43.2 39 0.00085 28.2 4.1 91 74-173 123-225 (266)
82 cd05568 PTS_IIB_bgl_like PTS_I 42.8 49 0.0011 21.6 3.9 22 9-30 62-83 (85)
83 cd03480 Rieske_RO_Alpha_PaO Ri 41.6 63 0.0014 23.9 4.7 65 120-206 15-84 (138)
84 PF07350 DUF1479: Protein of u 41.0 15 0.00033 32.6 1.4 38 160-206 319-357 (416)
85 KOG4176 Uncharacterized conser 40.8 2.2E+02 0.0048 24.6 8.3 108 69-201 191-300 (323)
86 cd03536 Rieske_RO_Alpha_DTDO T 39.4 38 0.00082 24.5 3.1 25 161-194 28-52 (123)
87 cd03548 Rieske_RO_Alpha_OMO_CA 35.6 71 0.0015 23.5 4.1 56 119-196 11-66 (136)
88 cd08788 CARD_NOD2_2_CARD15 Cas 34.5 19 0.00041 24.3 0.7 15 13-27 25-39 (81)
89 COG5553 Predicted metal-depend 33.7 1E+02 0.0022 23.9 4.6 61 131-196 98-162 (191)
90 cd03478 Rieske_AIFL_N AIFL (ap 33.7 61 0.0013 21.9 3.3 22 165-195 29-50 (95)
91 TIGR02377 MocE_fam_FeS Rieske 33.4 70 0.0015 22.1 3.6 22 165-195 32-53 (101)
92 cd03545 Rieske_RO_Alpha_OHBDO_ 33.2 65 0.0014 24.2 3.6 63 121-205 24-91 (150)
93 TIGR02409 carnitine_bodg gamma 32.9 37 0.00081 29.5 2.6 36 101-142 186-221 (366)
94 PF13621 Cupin_8: Cupin-like d 32.8 57 0.0012 25.9 3.5 45 155-208 204-249 (251)
95 PLN00139 hypothetical protein; 31.5 55 0.0012 28.1 3.3 37 100-142 111-147 (320)
96 cd03467 Rieske Rieske domain; 30.9 93 0.002 21.0 3.9 24 182-205 39-64 (98)
97 cd03479 Rieske_RO_Alpha_PhDO_l 30.7 80 0.0017 23.5 3.8 53 122-195 21-74 (144)
98 PHA02577 2 DNA end protector p 30.3 9.5 0.0002 29.5 -1.4 50 90-142 34-83 (181)
99 cd03531 Rieske_RO_Alpha_KSH Th 30.3 78 0.0017 22.5 3.5 25 162-195 29-53 (115)
100 COG3870 Uncharacterized protei 30.3 2E+02 0.0044 20.4 6.5 28 9-39 4-31 (109)
101 COG2146 {NirD} Ferredoxin subu 30.0 96 0.0021 21.9 3.9 14 182-195 43-56 (106)
102 cd00250 CAS_like Clavaminic ac 29.8 64 0.0014 26.3 3.4 37 100-142 94-130 (262)
103 PRK02963 carbon starvation ind 29.5 61 0.0013 27.8 3.2 33 159-199 266-301 (316)
104 cd03477 Rieske_YhfW_C YhfW fam 29.2 60 0.0013 22.1 2.6 26 161-195 25-50 (91)
105 cd05567 PTS_IIB_mannitol PTS_I 27.7 74 0.0016 21.3 2.8 22 7-28 65-86 (87)
106 PF11191 DUF2782: Protein of u 27.1 1.2E+02 0.0026 21.3 4.0 44 158-203 61-105 (105)
107 cd03469 Rieske_RO_Alpha_N Ries 26.6 91 0.002 21.8 3.3 25 162-195 29-53 (118)
108 COG2850 Uncharacterized conser 26.3 1.2E+02 0.0026 26.7 4.4 38 69-110 102-140 (383)
109 PRK09553 tauD taurine dioxygen 26.2 86 0.0019 26.0 3.5 40 158-205 232-272 (277)
110 PF03754 DUF313: Domain of unk 26.1 46 0.001 24.0 1.6 13 13-25 49-61 (114)
111 cd03532 Rieske_RO_Alpha_VanA_D 23.4 1.3E+02 0.0029 21.2 3.7 27 160-195 30-56 (116)
112 PF13986 DUF4224: Domain of un 22.9 62 0.0013 19.3 1.5 13 15-27 1-13 (47)
113 PF05906 DUF865: Herpesvirus-7 22.6 1.2E+02 0.0025 16.4 2.4 16 158-173 15-32 (35)
114 PLN02281 chlorophyllide a oxyg 21.7 1.3E+02 0.0027 27.9 3.9 64 121-205 219-284 (536)
115 KOG3889 Predicted gamma-butyro 21.3 66 0.0014 27.2 1.9 38 158-204 318-355 (371)
116 PF08489 DUF1743: Domain of un 21.0 51 0.0011 23.8 1.1 14 183-196 68-81 (118)
117 TIGR02410 carnitine_TMLD trime 20.5 87 0.0019 27.2 2.6 35 102-142 179-213 (362)
118 cd03539 Rieske_RO_Alpha_S5H Th 20.4 1.1E+02 0.0024 22.3 2.7 36 161-205 28-66 (129)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=3e-57 Score=379.84 Aligned_cols=205 Identities=40% Similarity=0.744 Sum_probs=178.0
Q ss_pred CeEeeccccEEEecCCCCHHHHHHHHHHhccCceecEEeec-CCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHH
Q 028194 1 MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIAR 79 (212)
Q Consensus 1 ~e~ls~~P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~-~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~ 79 (212)
||+||++|+|++|+||||++||++||+++++.++++.+... .|++ ..+++|+|.++|+...+ ++++++|++||++
T Consensus 47 ve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~--dpvv~~I~~Ria~ 122 (310)
T PLN00052 47 VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQ--DPVVSRIEERIAA 122 (310)
T ss_pred EEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCC--CHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999988753 2332 45679999999998654 3799999999999
Q ss_pred hhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCccc-CCCCCcccc-
Q 028194 80 ATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFL-DSGYDYKKC- 157 (212)
Q Consensus 80 ~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~-~~~~~~~~~- 157 (212)
++++|..+.|++||+||++||+|++|+|++........+++|++|+|+||||+++||||+||....... ..+..+++|
T Consensus 123 ~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~ 202 (310)
T PLN00052 123 WTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECA 202 (310)
T ss_pred HhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhh
Confidence 999999999999999999999999999998643322357899999999999999999999998742211 122345555
Q ss_pred -cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccccccc
Q 028194 158 -IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ 209 (212)
Q Consensus 158 -~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~ 209 (212)
.+++|+|++|+||||+|++++|..|+.++|+||||++|+||++|+|+|.++.
T Consensus 203 ~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~ 255 (310)
T PLN00052 203 HKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSY 255 (310)
T ss_pred cCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccc
Confidence 4899999999999999999999999999999999999999999999998765
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-52 Score=344.30 Aligned_cols=195 Identities=44% Similarity=0.831 Sum_probs=174.1
Q ss_pred CeEeeccccEEEecCCCCHHHHHHHHHHhccCceecEEeecCCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHh
Q 028194 1 MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA 80 (212)
Q Consensus 1 ~e~ls~~P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~ 80 (212)
+|+|||+|+++++|||||++||++|+.++++.++++++....+........+|+|.++|+... .++++++|++||+++
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~--~~~~~~~i~~ri~~~ 167 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDG--ASPVVSRIEQRIADL 167 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCC--CCHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999996554443334556899999999873 347999999999999
Q ss_pred hCCCCCCCCcceEEecCCCcccccccccCCC--CC--CCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCccc
Q 028194 81 TMLPQTHGEAFNVLRYEIGQKYDSHYDAFNP--AE--YGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKK 156 (212)
Q Consensus 81 ~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~--~~--~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~ 156 (212)
++++.+..|.+||++|+.||+|.+|+|++.+ .. .....++|++|+|+||+|+.+||+|+||..+
T Consensus 168 T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~------------ 235 (289)
T KOG1591|consen 168 TGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLG------------ 235 (289)
T ss_pred cCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCC------------
Confidence 9999999999999999999999999999963 11 2235799999999999999999999999843
Q ss_pred ccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEecccccccC
Q 028194 157 CIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH 210 (212)
Q Consensus 157 ~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~~ 210 (212)
..++|+|++|+|++|+|+.++|..|.++.|++|||..|+||+.++|+|.++|.
T Consensus 236 -~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 236 -MKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred -CcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 11499999999999999999999999999999999999999999999999885
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=2.8e-39 Score=253.71 Aligned_cols=175 Identities=35% Similarity=0.584 Sum_probs=147.8
Q ss_pred ccEEEecCCCCHHHHHHHHHHhccCceecEEeecCCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHhhCCC---
Q 028194 8 PRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLP--- 84 (212)
Q Consensus 8 P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~g~~--- 84 (212)
|.|++++||||++||++||+++++.+.++.+....+.. ...+++|++...|+...+ .++++++|++|+.++++++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~ 78 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNP-NHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGL 78 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCc-cccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchh
Confidence 88999999999999999999999877777776433221 134679999999998753 1368999999999999998
Q ss_pred CCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEee
Q 028194 85 QTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKP 164 (212)
Q Consensus 85 ~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P 164 (212)
....|++|++||.+|++|.+|+|+..... .++|.+|+++|||++++||+|.|+.... .....|+|
T Consensus 79 ~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~-----------~~~~~v~P 143 (178)
T smart00702 79 PLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL-----------MVCATVKP 143 (178)
T ss_pred hccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC-----------ccceEEeC
Confidence 68899999999999999999999986431 2689999999999999999999998531 13569999
Q ss_pred ccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 165 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 165 ~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
++|++|+|+|.. ..++|++|||++|+||++++|+|
T Consensus 144 ~~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 144 KKGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCcEEEEeCCC------CCccccCCcceeCCEEEEEEEEC
Confidence 999999998731 27999999999999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=219.15 Aligned_cols=169 Identities=24% Similarity=0.258 Sum_probs=128.8
Q ss_pred cEEEecCCCCHHHHHHHHHHhcc-CceecEEeecCCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHhhC-----
Q 028194 9 RALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATM----- 82 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~-~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~g----- 82 (212)
+|++|+||||++||+++++..++ .+.+..+.. |. ..+++|++...-.+ ++++..|+++|..++.
T Consensus 1 Mi~~I~~vLs~eec~~~~~~le~~~~~dg~~ta--G~---~~~~vKnN~ql~~d-----~~~a~~l~~~i~~~L~~~~l~ 70 (226)
T PRK05467 1 MLLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA--GA---QAAQVKNNQQLPED-----SPLARELGNLILDALTRNPLF 70 (226)
T ss_pred CeeeecccCCHHHHHHHHHHHHhcCCccCCcCc--Cc---cchhcccccccCCC-----CHHHHHHHHHHHHHHhcCchh
Confidence 47899999999999999999876 666655542 22 24567776654321 2467777777776542
Q ss_pred ----CCCCCCCcceEEecCCCcccccccccCCCCCCC-CCCCcceEEEEEeeccc--cCCccccCCCCCCcccCCCCCcc
Q 028194 83 ----LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG-PQMSQRLASFLLYLSDV--EEGGETMFPFENGIFLDSGYDYK 155 (212)
Q Consensus 83 ----~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~-~~~~~R~~T~liYLnd~--~~GGeT~Fp~~~~~~~~~~~~~~ 155 (212)
+|... .+++|+||.+|++|++|+|+......+ ....+|.+|+++||||+ ++||||+|+...
T Consensus 71 ~sa~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~----------- 138 (226)
T PRK05467 71 FSAALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY----------- 138 (226)
T ss_pred hhhcccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC-----------
Confidence 33333 478999999999999999998653211 11225689999999987 489999998642
Q ss_pred cccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEecccccccC
Q 028194 156 KCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH 210 (212)
Q Consensus 156 ~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~~ 210 (212)
....|+|++|++|+|++ .++|+|+||++|.||+++.|+++....
T Consensus 139 --g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~v~~ 182 (226)
T PRK05467 139 --GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSLVRD 182 (226)
T ss_pred --CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHHcCC
Confidence 34789999999999997 799999999999999999999987654
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.80 E-value=3.6e-19 Score=149.00 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=103.9
Q ss_pred CceecEEeec-CCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHhh-CCC----CCCCCcceEEecCCCcccccc
Q 028194 32 RLKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT-MLP----QTHGEAFNVLRYEIGQKYDSH 105 (212)
Q Consensus 32 ~~~~s~v~~~-~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~-g~~----~~~~E~~qv~rY~~G~~y~~H 105 (212)
.+.+|.+... +|. ....++.|+++++.++.. +.+.++|++.+-+-+ +.+ .+.+|.++++||.+|++|.+|
T Consensus 35 ~~~~s~i~~~~~~g-e~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H 110 (354)
T PHA02813 35 IWEESKVFDHEKGG-EVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNH 110 (354)
T ss_pred CccccceeccccCc-eEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcc
Confidence 5778888762 343 246788999999988743 234455444443323 322 467899999999999999999
Q ss_pred cccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCC
Q 028194 106 YDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTS 185 (212)
Q Consensus 106 ~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~ 185 (212)
.|+..... ...+.+|+|+|||++++||+|.|...+ ..+|. .|++|+|. +..
T Consensus 111 ~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~--------------~tsI~--~g~dlLFd---------h~l 161 (354)
T PHA02813 111 RDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD--------------NTIFS--TKNDVLFD---------KTL 161 (354)
T ss_pred cCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC--------------CceEe--ecceEEEe---------ccc
Confidence 99875431 133899999999999999999998632 12466 99999995 599
Q ss_pred cccccCCccceEEEEEe
Q 028194 186 LHGSCPVIKGEKWVATK 202 (212)
Q Consensus 186 ~H~~~pV~~G~K~~~~~ 202 (212)
.|+|++|.+|.||++..
T Consensus 162 ~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 162 NHSSDIITDGEKNIALI 178 (354)
T ss_pred ccCCcEeccCeEEEEEE
Confidence 99999999999998743
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=151.51 Aligned_cols=135 Identities=23% Similarity=0.247 Sum_probs=104.9
Q ss_pred ceecEEee-cCCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHhh-----CC--CCCCCCcceEEecCCCccccc
Q 028194 33 LKPSQLAL-RQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT-----ML--PQTHGEAFNVLRYEIGQKYDS 104 (212)
Q Consensus 33 ~~~s~v~~-~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~-----g~--~~~~~E~~qv~rY~~G~~y~~ 104 (212)
+.+|.+.. .+|. +.....-|.|....+.. .+.+.|++|++.++ +. ..+.+|+++++||.+|++|++
T Consensus 45 ~~~s~i~~~~~g~-e~~~~~~~ksKqii~e~-----~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~ 118 (418)
T PHA02869 45 CEDSKIFFPEKRT-ELLSIKDRKSKQIVFEN-----SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFAR 118 (418)
T ss_pred cccceeeccccCc-eeEeeccccceeEEech-----HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccc
Confidence 46777765 2443 22344568888887753 36677777776653 32 456789999999999999999
Q ss_pred ccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCC
Q 028194 105 HYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRT 184 (212)
Q Consensus 105 H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~ 184 (212)
|.|+.... ......+|+|+|||++++||+|.|... ...+|.|++| |+|. +.
T Consensus 119 H~Dg~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~~--------------~~~sI~pksg--LLFd---------h~ 169 (418)
T PHA02869 119 HRDFSTVF----SKNIICVHLLLYLEQPETGGETVIYID--------------NNTSVKLKTD--HLFD---------KT 169 (418)
T ss_pred cccCceec----CCCEEEEEEEEEEeccCCCCceEEEeC--------------CCceEecCCC--eEec---------cc
Confidence 99987643 245678999999999999999999872 3467999999 8885 59
Q ss_pred CcccccCCccceEEEEEe
Q 028194 185 SLHGSCPVIKGEKWVATK 202 (212)
Q Consensus 185 ~~H~~~pV~~G~K~~~~~ 202 (212)
..|+|++|.+|.||++..
T Consensus 170 l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 170 IEHESITVESGRKCVALF 187 (418)
T ss_pred cccCCcEeecCeEEEEEE
Confidence 999999999999999864
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.76 E-value=4.4e-18 Score=130.33 Aligned_cols=168 Identities=26% Similarity=0.305 Sum_probs=114.4
Q ss_pred ccEEEecCCCCHHHHHHHHHHhcc-CceecEEeecCCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHh------
Q 028194 8 PRALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA------ 80 (212)
Q Consensus 8 P~i~~i~~fLs~~ec~~li~~~~~-~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~------ 80 (212)
|..+.|+.+||+++|.++.+.... .+....... |- .-...|.+... +.. +++...|..-|.+.
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~--g~---q~a~vk~n~ql--p~~---s~l~~~vg~~il~al~~~pl 71 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ--GP---QGAQVKNNLQL--PQD---SALARELGNEILQALTAHPL 71 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhcccccccccc--Cc---chhhhhccccC--Ccc---cHHHHHHHHHHHHHHHhchh
Confidence 577899999999999999988543 222221111 11 11223333322 211 13444444443332
Q ss_pred -hC--CCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcc---eEEEEEeecccc--CCccccCCCCCCcccCCCC
Q 028194 81 -TM--LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQR---LASFLLYLSDVE--EGGETMFPFENGIFLDSGY 152 (212)
Q Consensus 81 -~g--~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R---~~T~liYLnd~~--~GGeT~Fp~~~~~~~~~~~ 152 (212)
++ +|. ..++.++.||..|++|.+|+|+..+... +..+.| .+++.+||+|++ +|||++..+.-
T Consensus 72 ff~aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~h-p~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-------- 141 (229)
T COG3128 72 FFAAALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIH-PGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-------- 141 (229)
T ss_pred HHHhhccc-ccCCchhhhccCCCcccccccCcccccC-CCCCceeEeeeeeeeecCCccccCCceEEEeccc--------
Confidence 22 232 4667899999999999999999865421 122324 377888999985 69999986642
Q ss_pred CcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccccccc
Q 028194 153 DYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ 209 (212)
Q Consensus 153 ~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~ 209 (212)
....|+-..|++|+|++ .++|++.||+.|.|+....|+++..-
T Consensus 142 -----g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qslir 184 (229)
T COG3128 142 -----GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSLIR 184 (229)
T ss_pred -----cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHHhh
Confidence 36889999999999997 89999999999999999999987543
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.76 E-value=1.2e-18 Score=123.89 Aligned_cols=96 Identities=31% Similarity=0.495 Sum_probs=70.4
Q ss_pred ceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeecccc---CCccccCCCCCCcccCCCCCcccccceEEeeccC
Q 028194 91 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE---EGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRG 167 (212)
Q Consensus 91 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G 167 (212)
+|+.+|.+|++|++|+|... ...+.+|+++|||++. +||+|.|.... .. .+. ........++|+.|
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~--~~~-~~~~~~~~~~p~~g 69 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DS--DDV-SREVEDFDIVPKPG 69 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--T--SST-CEEEGGGSEE-BTT
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cC--CCc-ceEEEeccccCCCC
Confidence 58999999999999999864 3579999999999876 89999998642 10 000 00001122349999
Q ss_pred CEEEEeeeCCCCCcCCCCcccccCC-ccceEEEEEeccc
Q 028194 168 DGLLFYSLFPNGTIDRTSLHGSCPV-IKGEKWVATKWIR 205 (212)
Q Consensus 168 ~av~f~n~~~~g~~d~~~~H~~~pV-~~G~K~~~~~W~~ 205 (212)
++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 70 ~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 70 RLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 9999986 5899999999 8899999999985
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=99.38 E-value=6.6e-12 Score=99.44 Aligned_cols=169 Identities=21% Similarity=0.250 Sum_probs=113.7
Q ss_pred cEEEecCCCCHHHHHHHHHHhcc-----CceecEEeecCCceeeeccceeeeceeeeCCCCChhHHH-------HHHHHH
Q 028194 9 RALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGIL-------ELIEHK 76 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~-----~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~-------~~l~~r 76 (212)
.+.+++|||-.+--+.+.+..+. .|.+..+... . ....+++|.....|+...+..-..+ +.+-..
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~--~-~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h 130 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSP--D-AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILH 130 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccC--c-CCcchhhccCCceEecCCCCCccceeeecccchhhhhh
Confidence 57899999999887777666543 4555555432 1 1234678999999998654210111 111111
Q ss_pred HHHhhCCCCCCCCcceEEecCC-CcccccccccCCCCCCCCCCCcceEEEEEeecc---c-cCCcccc-CCCCCCcccCC
Q 028194 77 IARATMLPQTHGEAFNVLRYEI-GQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSD---V-EEGGETM-FPFENGIFLDS 150 (212)
Q Consensus 77 i~~~~g~~~~~~E~~qv~rY~~-G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd---~-~~GGeT~-Fp~~~~~~~~~ 150 (212)
.....+-....-..-.|++|.- |-.|-.|+|+-. +-.|.+|++.|||. + ..||.+. ||....
T Consensus 131 ~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~----- 198 (280)
T KOG3710|consen 131 CNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGST----- 198 (280)
T ss_pred hccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCC-----
Confidence 1111111111223456899985 668999999753 55799999999995 3 2466664 665322
Q ss_pred CCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccccc
Q 028194 151 GYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQ 207 (212)
Q Consensus 151 ~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~ 207 (212)
.-..|.|+.+++||||| |.+-.|+++|+.. +||.++.|+.+.
T Consensus 199 -------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda 240 (280)
T KOG3710|consen 199 -------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDA 240 (280)
T ss_pred -------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEecc
Confidence 34679999999999999 7888999999997 699999998754
No 10
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9e-09 Score=83.95 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=78.5
Q ss_pred cceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccc---cCCccc-cCCCCCCcccCCCCCcccccceEEeec
Q 028194 90 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGET-MFPFENGIFLDSGYDYKKCIGLKVKPR 165 (212)
Q Consensus 90 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GGeT-~Fp~~~~~~~~~~~~~~~~~~~~v~P~ 165 (212)
..|+..|.+|.+|..|-|.+.. ...|.+|.++|+|.. +-||++ .|+..-.. ...+ ..-..|.|+
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~-~~~~-----~~~~ti~P~ 204 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKN-NTAA-----DSFKTIAPV 204 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccc-cccc-----ccccccCCC
Confidence 5899999999999999998853 467999999999974 679999 67664311 0000 134679999
Q ss_pred cCCEEEEeeeCCCCCcCCCCcccccCCcc-ceEEEEEecccccccCC
Q 028194 166 RGDGLLFYSLFPNGTIDRTSLHGSCPVIK-GEKWVATKWIRDQEQHE 211 (212)
Q Consensus 166 ~G~av~f~n~~~~g~~d~~~~H~~~pV~~-G~K~~~~~W~~~~~~~~ 211 (212)
-+++++|.+- -..+.|.|.+|.. ..|.+++.|+|.....+
T Consensus 205 fn~lv~F~s~------~~Hs~h~V~~~~~~~~RlsV~GW~r~~~~~~ 245 (252)
T COG3751 205 FNSLVFFKSR------PSHSVHSVEEPYAAADRLSVTGWFRRPGPAE 245 (252)
T ss_pred CceEEEEEec------CCccceeccccccccceEEEeeEEecCCCcc
Confidence 9999999871 0137777777543 58999999999877654
No 11
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.84 E-value=4.1e-09 Score=70.02 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=43.7
Q ss_pred CCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeec----cccCCccccCCCC
Q 028194 87 HGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLS----DVEEGGETMFPFE 143 (212)
Q Consensus 87 ~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----d~~~GGeT~Fp~~ 143 (212)
..+.+++++|..|++|++|+|...... +.+|.+|+||||| +.++||++.|...
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 356789999999999999999876431 4789999999999 4467899998764
No 12
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.80 E-value=2.7e-08 Score=83.78 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=89.8
Q ss_pred cceeeeceeeeCCCCChhHHHHHHHHHHHHhhCC---CCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEE
Q 028194 50 KGTRTSSGTFISASEDKTGILELIEHKIARATML---PQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFL 126 (212)
Q Consensus 50 ~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~g~---~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l 126 (212)
...|.|....+... ....+.++|++.+..-+.- .....+.+.+++|.+|++|+.|.|..... .......+++
T Consensus 38 ~~~r~sk~iv~~~~-~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~Lv 112 (339)
T PF03336_consen 38 HEFRKSKQIVIEDS-LNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLV 112 (339)
T ss_pred ccccccceEEEecc-chHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEE
Confidence 33788887766643 3346778887776654432 23456789999999999999999944322 2456789999
Q ss_pred EeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 127 LYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 127 iYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
+||+.+.+||+|.+.-.+. ..-.|.+ +.-++| |..+.|++.+|.+|.|++|.
T Consensus 113 LyL~~~~~GGktkiyi~~~------------~~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPN------------DNTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCC------------Cceeeec--cccEEE---------eccccccceEeccCeEEEEE
Confidence 9999999999999763211 1222433 667788 46999999999999999864
No 13
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.74 E-value=1.1e-08 Score=72.14 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=56.4
Q ss_pred CcceEEecC---CCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeec
Q 028194 89 EAFNVLRYE---IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPR 165 (212)
Q Consensus 89 E~~qv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~ 165 (212)
+.+++.+|. .+..+.+|+|.. .+++|++++ .++|++.|.... ..+.|.|.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-------------~~~~v~~~ 54 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-------------EWVDVPPP 54 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-------------EEEE----
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-------------cccCccCc
Confidence 458999999 889999999964 468999999 677889987643 34677777
Q ss_pred cCCEEEEe-eeCC--CCCcCCCCcccccCCccceEEEEEeccc
Q 028194 166 RGDGLLFY-SLFP--NGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 166 ~G~av~f~-n~~~--~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
.+.++++. ++.. .+......+|+++++.+|.|++++.|++
T Consensus 55 ~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 55 PGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 76655554 3111 2334578999999999999999999986
No 14
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=98.23 E-value=1.8e-05 Score=67.87 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=106.1
Q ss_pred EEEecCCCCHHHHHHHHHHhcc--CceecEEeecCCceeeeccceee---eceeeeCCCCCh------hHHHHHHHHHHH
Q 028194 10 ALYFPNFASAEQCQSIIATAKK--RLKPSQLALRQGETVESTKGTRT---SSGTFISASEDK------TGILELIEHKIA 78 (212)
Q Consensus 10 i~~i~~fLs~~ec~~li~~~~~--~~~~s~v~~~~g~~~~~~~~~R~---s~~~~l~~~~~~------~~~~~~l~~ri~ 78 (212)
-+++++|+++...+.+.+.... ++++-.+ .-+|. .+-.-++.-+.+ +.+.+..+..++
T Consensus 38 h~~i~~~vnd~~l~~vrkei~~~~~f~~k~t-----------Dlyr~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~q 106 (476)
T KOG3844|consen 38 HFIIRDFVNDSLLRVVRKEIHGSIHFTEKET-----------DLYRVLQTGDLANLEGLEFPALFSFRDSLYKEARGEIQ 106 (476)
T ss_pred ceeeeccCCHHHHHHHHHHHhhccchhhhcc-----------hhhheeccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 4789999998888888755543 3333211 11121 111122222111 122333444555
Q ss_pred HhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeecccc----CCcccc-CCCCCCcccCCCCC
Q 028194 79 RATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE----EGGETM-FPFENGIFLDSGYD 153 (212)
Q Consensus 79 ~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~----~GGeT~-Fp~~~~~~~~~~~~ 153 (212)
.++|.-...--++.+..|..|.+--.|-|-. +.|.+++++||-++. -||++. ||..... .
T Consensus 107 ~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~-~----- 171 (476)
T KOG3844|consen 107 DVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPS-Q----- 171 (476)
T ss_pred hccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEeccccccc-C-----
Confidence 6665433334468899999999999998854 579999999999874 388887 4543221 0
Q ss_pred cccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce-EEEEEecccccc
Q 028194 154 YKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE-KWVATKWIRDQE 208 (212)
Q Consensus 154 ~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~-K~~~~~W~~~~~ 208 (212)
++..-.++.|.-...+||.- -+-+.|.+.-|.+-. |.+++.|+|...
T Consensus 172 -P~s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~ 219 (476)
T KOG3844|consen 172 -PKSVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQ 219 (476)
T ss_pred -ccchhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCc
Confidence 01123568999999999974 368999999999864 599999999654
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.19 E-value=3.2e-05 Score=64.77 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=94.5
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCceecEEeecCCcee--eeccceeeeceeeeCCCCChhHHH------HHHHHHHHHh
Q 028194 9 RALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETV--ESTKGTRTSSGTFISASEDKTGIL------ELIEHKIARA 80 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~~g~~~--~~~~~~R~s~~~~l~~~~~~~~~~------~~l~~ri~~~ 80 (212)
..+++++||+++||+.|.+.++..+....+.. .+... ......|.....+. .+ +++ .+|...++++
T Consensus 29 Gyvvl~~vls~eev~~lr~~i~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~---~~--~~~~~l~~~p~l~~~~~~L 102 (277)
T TIGR02408 29 GFLLLENLFSDDEVAALLAEVERMTRDPAIVR-DEEAITEPGSNAVRSIFEVHV---LS--PILARLVRDPRVANAARQI 102 (277)
T ss_pred CEEECcccCCHHHHHHHHHHHHHHHhcccccC-CCcceecCCCCceEEEecccc---cC--HHHHHHHcChHHHHHHHHH
Confidence 45899999999999999998866332211100 00000 00112232111111 11 222 2344555566
Q ss_pred hCCCCCCCCcceEEecC-CCcccccccccCCCCCCCCCCCcceEEEEEeeccccC-CccccC-CCCCCcccC--------
Q 028194 81 TMLPQTHGEAFNVLRYE-IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEE-GGETMF-PFENGIFLD-------- 149 (212)
Q Consensus 81 ~g~~~~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~-GGeT~F-p~~~~~~~~-------- 149 (212)
+|-+.......-+.+.. .|+.+.||.|...-.........+.+|+.|+|.|+.+ .|.+.| |........
T Consensus 103 lG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~~ 182 (277)
T TIGR02408 103 LGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPRD 182 (277)
T ss_pred cCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccch
Confidence 67443221111123343 2457889999753111000112368999999999864 476766 433221000
Q ss_pred ---CCC-----Ccc---------cc-cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc-eEEEEEeccc
Q 028194 150 ---SGY-----DYK---------KC-IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG-EKWVATKWIR 205 (212)
Q Consensus 150 ---~~~-----~~~---------~~-~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G-~K~~~~~W~~ 205 (212)
... ... +. .-+.+.-++|++|||.+ .++|++-|-.+. .|+++..=|.
T Consensus 183 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l~l~y~ 248 (277)
T TIGR02408 183 NYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNVFMVFN 248 (277)
T ss_pred hhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeEEEEEe
Confidence 000 000 00 12346669999999965 999999998875 5666654443
No 16
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=98.12 E-value=6.8e-06 Score=58.36 Aligned_cols=89 Identities=24% Similarity=0.213 Sum_probs=49.0
Q ss_pred EEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCC------CCcccccceEEeecc
Q 028194 93 VLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSG------YDYKKCIGLKVKPRR 166 (212)
Q Consensus 93 v~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~------~~~~~~~~~~v~P~~ 166 (212)
+..|.+|++-.+|.= .+..++.++||+.+...|.+.|........-.. ..........++|+.
T Consensus 4 ~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---T
T ss_pred EEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCC
Confidence 356778888888743 234899999999888888888876532221000 011223578899999
Q ss_pred CCEEEEeeeCCCCCcCCCCcccccCCccc-eEEEEE
Q 028194 167 GDGLLFYSLFPNGTIDRTSLHGSCPVIKG-EKWVAT 201 (212)
Q Consensus 167 G~av~f~n~~~~g~~d~~~~H~~~pV~~G-~K~~~~ 201 (212)
|++|||++ .+.|++.|-.+. .|+++.
T Consensus 73 G~lvlFPs---------~l~H~v~p~~~~~~Risis 99 (101)
T PF13759_consen 73 GDLVLFPS---------WLWHGVPPNNSDEERISIS 99 (101)
T ss_dssp TEEEEEET---------TSEEEE----SSS-EEEEE
T ss_pred CEEEEeCC---------CCEEeccCcCCCCCEEEEE
Confidence 99999997 999999999875 677653
No 17
>PHA02866 Hypothetical protein; Provisional
Probab=98.10 E-value=1e-05 Score=66.94 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhh--CCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCC
Q 028194 68 GILELIEHKIARAT--MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG 145 (212)
Q Consensus 68 ~~~~~l~~ri~~~~--g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~ 145 (212)
+++.+++ |+.+.. ..+.-..+-+.+++|..|.+|.-|.|..... ....+-.++++||+.+.+||+|.++-.+.
T Consensus 59 ~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~ 133 (333)
T PHA02866 59 QVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED----RHRGREYTLVLHLSSPKNGGKTDVCVGDK 133 (333)
T ss_pred HHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec----cCCceEEEEEEEEeccccCCceEEEeCCC
Confidence 4666665 333321 1122345678999999999999999975422 23457899999999999999999984221
Q ss_pred cccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 146 IFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
-++. .+ +=++| |....|+..-|.+|.|.++-
T Consensus 134 --------------t~i~-~~-~DvLF---------DKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 134 --------------TVIS-TA-DDFLL---------EKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred --------------ceEe-ec-cceee---------eccccccceeeecCcEEEEE
Confidence 1122 22 23566 57999999999999998763
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=4.1e-05 Score=58.30 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=73.1
Q ss_pred ceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccc---cCCccccCCCCCCcccCCCCCcccccceEEeeccC
Q 028194 91 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRG 167 (212)
Q Consensus 91 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G 167 (212)
.-++||++|++=..|.|-.-... =-+-+++.||++ +.|||.+...-.+..- .....+.+++|
T Consensus 64 plllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~Q--------SR~~V~~L~qG 128 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQ--------SRAMVLPLRQG 128 (173)
T ss_pred hhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCcc--------CccccCCcCCC
Confidence 56899999999999998642211 025677889986 6899998855332210 13578999999
Q ss_pred CEEEEeeeC-C----CCCcCCCCcccccCCccceEEEEEecccc
Q 028194 168 DGLLFYSLF-P----NGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 168 ~av~f~n~~-~----~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
+|+||..-. | .|-.--...|++.+|.+|+++.+-.-||+
T Consensus 129 da~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 129 DALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 999997432 2 12234567899999999999999887775
No 19
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.80 E-value=8e-05 Score=58.42 Aligned_cols=174 Identities=15% Similarity=0.085 Sum_probs=85.4
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCceecEEeecCCceeeeccceeeeceeeeCCCCC-hhHHH-H-HHHHHHHHhhCCCC
Q 028194 9 RALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASED-KTGIL-E-LIEHKIARATMLPQ 85 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~-~~~~~-~-~l~~ri~~~~g~~~ 85 (212)
..++++|||+++||+.|.+......... .....................++..... ...+. . .+...+.+++|...
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 83 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRA-LEPDQDVSDFFDESFFGDYTEQLAKSPNFYDLFLHPPRILDLVRALLGSDV 83 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHH-TTTTTSCEEEESTSCCCTCCCCGCCCHHHHHHHHTHHHHHHHHHHHHTSSE
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhh-hccccccccccccccccccccccccchhhHHHHhhHHHHHHHHHHhhCCcc
Confidence 4589999999999999998886520000 0000000000000000011111111000 00111 2 46666677777543
Q ss_pred C----CCCcce-EEecC-CCccc-ccccccCCCCCCCCCCCcceEEEEEeecccc-CCccccC-CCCCCccc---CCCC-
Q 028194 86 T----HGEAFN-VLRYE-IGQKY-DSHYDAFNPAEYGPQMSQRLASFLLYLSDVE-EGGETMF-PFENGIFL---DSGY- 152 (212)
Q Consensus 86 ~----~~E~~q-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~---~~~~- 152 (212)
. ....++ +++-. +|... .||.|...... ....+.+|+.|+|.|+. +.|.+.+ |....... ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~ 160 (211)
T PF05721_consen 84 FVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFP 160 (211)
T ss_dssp EEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCC
T ss_pred hhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCccccccccc
Confidence 2 111221 23333 46665 99999875321 01578999999999984 4566665 43221110 0000
Q ss_pred -----Cc-------ccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 153 -----DY-------KKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 153 -----~~-------~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.. .....+.+..++|++|||. ..++|++.|-.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 161 EEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTSD 206 (211)
T ss_dssp CCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-SS
T ss_pred ccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCCc
Confidence 00 0124578899999999996 4999999996653
No 20
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.73 E-value=0.00014 Score=58.06 Aligned_cols=90 Identities=20% Similarity=0.058 Sum_probs=62.6
Q ss_pred ceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCccc-C--C---CCCcccccceEEee
Q 028194 91 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFL-D--S---GYDYKKCIGLKVKP 164 (212)
Q Consensus 91 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~-~--~---~~~~~~~~~~~v~P 164 (212)
.=+.++.+|++-..|+= .+..+|-++||+.+..+|.+.|........ . . ......+..+.|+|
T Consensus 98 ~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P 166 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPP 166 (201)
T ss_pred EeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECC
Confidence 33677889998887743 235899999999988888888854322110 0 0 00001123467999
Q ss_pred ccCCEEEEeeeCCCCCcCCCCcccccCCcc-ceEEEE
Q 028194 165 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIK-GEKWVA 200 (212)
Q Consensus 165 ~~G~av~f~n~~~~g~~d~~~~H~~~pV~~-G~K~~~ 200 (212)
+.|++|+|+| .+.|++.|-.. ++|+++
T Consensus 167 ~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 167 QEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 9999999998 99999999886 477765
No 21
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.61 E-value=0.0015 Score=55.18 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=95.3
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCceecEE-eecCCceeeeccceeeeceeeeCCCCChhHHH------HHHHHHHHHhh
Q 028194 9 RALYFPNFASAEQCQSIIATAKKRLKPSQL-ALRQGETVESTKGTRTSSGTFISASEDKTGIL------ELIEHKIARAT 81 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~~~~~s~v-~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~------~~l~~ri~~~~ 81 (212)
..++++++||++|++.|.+.++..+..... ...... ...|.. |-....+ +.+ .+|...+++++
T Consensus 15 Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~-----~~~~~~---~~~~~~~--~~~~~l~~~~~l~~~~~~ll 84 (288)
T TIGR01762 15 GFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG-----GTNIAN---YDRHLDD--DFLASHICRPEICHRVESIL 84 (288)
T ss_pred CEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC-----CceeEe---eeecccC--HHHHHHhcCHHHHHHHHHHh
Confidence 467899999999999999987643321110 000000 011211 1111111 111 33445556667
Q ss_pred CCCCCCCCcceEEecCCCcccccccccCCCCCCC------C--CCCcceEEEEEeecccc-CCccccC-CCCCCccc-C-
Q 028194 82 MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG------P--QMSQRLASFLLYLSDVE-EGGETMF-PFENGIFL-D- 149 (212)
Q Consensus 82 g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~------~--~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~-~- 149 (212)
|-+.-..-..-+.+...++.+.||.|...-...+ + ....+.+|+.|.|.|+. +-|.+.| |....... +
T Consensus 85 G~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~ 164 (288)
T TIGR01762 85 GPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDE 164 (288)
T ss_pred CCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCc
Confidence 7543222222345555555689999965422111 0 11247899999999985 4455555 33221100 0
Q ss_pred --------------------CCC----------C--c--ccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 150 --------------------SGY----------D--Y--KKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 150 --------------------~~~----------~--~--~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.++ + . .+...+.+.-++|+++||. ..++|++.|-++.
T Consensus 165 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N~S~ 235 (288)
T TIGR01762 165 TRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPNSGE 235 (288)
T ss_pred ccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCCCCC
Confidence 000 0 0 0012356777899999996 4999999999884
Q ss_pred --eEEEE-Eecccc
Q 028194 196 --EKWVA-TKWIRD 206 (212)
Q Consensus 196 --~K~~~-~~W~~~ 206 (212)
.|+++ ..|+..
T Consensus 236 ~~~R~~~~~ry~~~ 249 (288)
T TIGR01762 236 SQMRMGFASRYVPS 249 (288)
T ss_pred CceEEEEEEEEcCC
Confidence 35554 446543
No 22
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=97.51 E-value=0.00077 Score=53.05 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=75.0
Q ss_pred EEEecCCCCHHHHHHHHHHhcc--CceecEEeecCCceeeec-------------cceeeece-eeeCCC--CChhHHHH
Q 028194 10 ALYFPNFASAEQCQSIIATAKK--RLKPSQLALRQGETVEST-------------KGTRTSSG-TFISAS--EDKTGILE 71 (212)
Q Consensus 10 i~~i~~fLs~~ec~~li~~~~~--~~~~s~v~~~~g~~~~~~-------------~~~R~s~~-~~l~~~--~~~~~~~~ 71 (212)
+++++||||++|.++|++.... .+...... .+...... ..++-+.. .+-... .-+ +.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p-~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP--MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFP-EWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC--CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCH-HHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc--CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCcc-HHHH
Confidence 6899999999999999999873 22111111 11110000 00111100 000000 001 2344
Q ss_pred HHHHHHHHhhC-CCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCC
Q 028194 72 LIEHKIARATM-LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDS 150 (212)
Q Consensus 72 ~l~~ri~~~~g-~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~ 150 (212)
.+.+++....+ .+........|..|.+|+.-.+|.|.... ..+..++|+-+ |+...|-.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~---- 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS---- 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG----
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc----
Confidence 55555555444 22223345678899999999999998732 13566777665 222222211000
Q ss_pred CCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 151 GYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 151 ~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.....+.|.-..|+++++. |...... |++.|+..+
T Consensus 143 ----~~~~~~~~~L~~gsl~vm~-----g~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 ----DDDEPIEVPLPPGSLLVMS-----GEARYDW-HGIPPVKKD 177 (194)
T ss_dssp ----GTS-EEEEEE-TTEEEEEE-----TTHHHHE-EEE-S-SCE
T ss_pred ----CCCccEEEEcCCCCEEEeC-----hHHhhhe-eEcccccCC
Confidence 0014578999999999996 3333455 999999874
No 23
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.40 E-value=0.00066 Score=52.88 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=60.8
Q ss_pred ccccccccCCCCCCCCCCCcceEEEEEeeccc-cCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCC
Q 028194 101 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNG 179 (212)
Q Consensus 101 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g 179 (212)
....|.|.... +.-+++++-|.-. ++||..++|..++. -.+++|.|..|++|+|-.
T Consensus 86 ~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~~----------~~g~~~~~~~GtVl~~~~----- 142 (171)
T PF12851_consen 86 CTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDPN----------ILGVAFAYQPGTVLIFCA----- 142 (171)
T ss_pred CccceecCCCC--------CCCeEEEEecCCccccCceEeccccccc----------cCCEEEecCCCcEEEEcc-----
Confidence 45677786532 3347777777654 88999999973221 158999999999999975
Q ss_pred CcCCCCcccccCCcc-----ceEEEEEeccc
Q 028194 180 TIDRTSLHGSCPVIK-----GEKWVATKWIR 205 (212)
Q Consensus 180 ~~d~~~~H~~~pV~~-----G~K~~~~~W~~ 205 (212)
...+|++.||.. |+|+.+..+.|
T Consensus 143 ---~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ---KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ---cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 568999999997 99999988776
No 24
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=96.77 E-value=0.077 Score=42.75 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=91.0
Q ss_pred ccccEEEecCCCCHHHHHHHHHHhcc-----CceecEEeecCCceeeeccceeee-ce--eeeCCC-------------C
Q 028194 6 WRPRALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETVESTKGTRTS-SG--TFISAS-------------E 64 (212)
Q Consensus 6 ~~P~i~~i~~fLs~~ec~~li~~~~~-----~~~~s~v~~~~g~~~~~~~~~R~s-~~--~~l~~~-------------~ 64 (212)
..|.++++++|+ .++.++|++..+. .+.... ...|.. -+.|-. -+ .|+.+. .
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~--~~gg~~----msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~ 88 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMV--TPGGYT----MSVAMTNCGALGWVTDRRGYRYSPIDPLTGK 88 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCcccee--cCCCCc----ceeEEeccccceEecCCCCcccCCcCCCCCC
Confidence 567899999996 8888888776654 233211 112211 112211 11 232110 0
Q ss_pred ChhH---HHHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCC
Q 028194 65 DKTG---ILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFP 141 (212)
Q Consensus 65 ~~~~---~~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp 141 (212)
...+ .+..|+++++...+.+....+..-|..|.+|+.-.+|.|..... ...-++++-+ |..-.|.
T Consensus 89 pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~ 156 (213)
T PRK15401 89 PWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQ 156 (213)
T ss_pred CCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEE
Confidence 0112 57888888888877654455668899999999999999964221 1233555443 3333332
Q ss_pred CCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 142 FENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
..... ......+|.-..|++||+- |.. ....|++-|+..|
T Consensus 157 ~~~~~--------~~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 157 FGGLK--------RSDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred ecccC--------CCCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 21100 0013478999999999994 332 3467999888764
No 25
>PHA02923 hypothetical protein; Provisional
Probab=96.05 E-value=0.015 Score=48.59 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCCC--CCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCC
Q 028194 68 GILELIEHKIARATMLP--QTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG 145 (212)
Q Consensus 68 ~~~~~l~~ri~~~~g~~--~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~ 145 (212)
.+.+.|++.+-+-+... ....-.+.+..|++|.+ .|. ...+....+++||+.+..||+|.|+...
T Consensus 44 di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l----------~~~~~~y~LvLyL~~p~~GGt~i~~~~~- 110 (315)
T PHA02923 44 DISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL----------TDDNMGYYLVIYLNRPKSGKTLIYPTPE- 110 (315)
T ss_pred HHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee----------ecCceEEEEEEEEeccCCCCeEEEecCC-
Confidence 47777777665544332 12233588999999995 111 1123788999999999999999988732
Q ss_pred cccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEe
Q 028194 146 IFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATK 202 (212)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~ 202 (212)
..|.- + .=++| |....|+..-|.+|.|.+|-.
T Consensus 111 --------------t~i~~-~-~DvLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 --------------TVITS-S-EDIMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred --------------CeEee-c-cceee---------ecccccceeeeecCcEEEEEE
Confidence 12222 2 23566 579999999999999998755
No 26
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.081 Score=41.02 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=54.4
Q ss_pred EeeccccEEEecCCCCHHHHHHHHHHhccCceecEEeec------CCceeeeccceeeeceeeeCCCCChhHHHHHHHHH
Q 028194 3 VLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALR------QGETVESTKGTRTSSGTFISASEDKTGILELIEHK 76 (212)
Q Consensus 3 ~ls~~P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~------~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~r 76 (212)
++...|.+++|+||+++||-..+++-.+..-++--.... -|. +.. ....+. .+-+ +-.+.+..+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGG---vvh-----~~glip-eelP-~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGG---VVH-----KTGLIP-EELP-PWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCC---ccc-----cCCcCc-cccC-HHHHHHHHH
Confidence 456789999999999999999998877642111100000 010 000 011121 1111 223444444
Q ss_pred HHHhhCCCCCCCCcceEEecCCCcccccccccC
Q 028194 77 IARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF 109 (212)
Q Consensus 77 i~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~ 109 (212)
|.. +|+-.+..-..-|..|.+||---||.|+-
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 543 33322334456788899999999999985
No 27
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=94.75 E-value=1.3 Score=35.18 Aligned_cols=83 Identities=24% Similarity=0.185 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccC-CccccCCCCCCccc
Q 028194 70 LELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEE-GGETMFPFENGIFL 148 (212)
Q Consensus 70 ~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~-GGeT~Fp~~~~~~~ 148 (212)
.-.+...+....|.+....|..-+.+|.+|+.-.+|.|..... ...-++++-+=.+..+. ||... -.
T Consensus 87 l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSLg~~~~F~~~~~~r-~~------ 154 (194)
T COG3145 87 LLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSLGAPCIFRLRGRRR-RG------ 154 (194)
T ss_pred cHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEecCCCeEEEeccccC-CC------
Confidence 4455566667888888888889999999999999999975421 11124444433333332 33222 11
Q ss_pred CCCCCcccccceEEeeccCCEEEEe
Q 028194 149 DSGYDYKKCIGLKVKPRRGDGLLFY 173 (212)
Q Consensus 149 ~~~~~~~~~~~~~v~P~~G~av~f~ 173 (212)
...++.-..|++|++-
T Consensus 155 ---------~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 155 ---------PGLRLRLEHGDVVVMG 170 (194)
T ss_pred ---------CceeEEecCCCEEEec
Confidence 4689999999999994
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.43 E-value=0.24 Score=41.18 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=54.3
Q ss_pred cceEEecCCC------cccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIG------QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+- -...+|+|.. .+|+|+- ++ .|| +..... + ..+.|+
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~--v~G-LqV~~~-g------------~Wi~V~ 167 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DD--VEG-LQLLKD-A------------EWLMVP 167 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CC--CCc-eEEeeC-C------------eEEECC
Confidence 4789999762 1255777753 6788744 33 244 433221 1 468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|..||-- ..+.||.. ..++|++.-.....||++..+++
T Consensus 168 p~p~a~vVNiGD~l~~~tng~~-~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 168 PISDAILIIIADQTEIITNGNY-KSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred CCCCcEEEEccHHHHHHhCCcc-ccccceEEcCCCCCEEEEEEEEc
Confidence 9999887741 11234433 67899998555567999987765
No 29
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.43 E-value=0.33 Score=41.95 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=54.7
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+|+- |. .|| +..... ...+.|.
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q--d~-v~G-LQV~~~-------------g~Wv~V~ 251 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ--DE-VGG-LEVMKD-------------GEWFNVK 251 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe--CC-CCC-eeEeeC-------------CceEECC
Confidence 58999998732 245777754 5788754 32 344 433221 1568999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCccccc-CCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSC-PVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~-pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||.. ..++|+|. +-....||++.-+++-
T Consensus 252 p~pgalVVNiGD~Le~wTNg~~-kSt~HRVv~~~~~~~R~Sia~F~~P 298 (341)
T PLN02984 252 PIANTLVVNLGDMMQVISDDEY-KSVLHRVGKRNKKKERYSICYFVFP 298 (341)
T ss_pred CCCCeEEEECChhhhhhcCCee-eCCCCccccCCCCCCeEEEEEEecC
Confidence 9999988852 11234433 67899994 3334579998877653
No 30
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.25 Score=38.69 Aligned_cols=102 Identities=22% Similarity=0.201 Sum_probs=70.4
Q ss_pred cceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccc---cCCccccCCCCCCcccCCCCCcccccceEEeecc
Q 028194 90 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRR 166 (212)
Q Consensus 90 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~ 166 (212)
..-++.|.+|++=-.|.|---.- -=-+-+.|-|+++ +.|||.+.-.-.+..- ..+..|.-++
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~Q--------Sr~~vvpLrq 189 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRMQ--------SRPTVVPLRQ 189 (236)
T ss_pred CceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEecccccc--------cCCceeeccC
Confidence 35689999999999999853211 0125566779987 5799887644322210 1356788889
Q ss_pred CCEEEEeeeCC--C---CCcCCCCcccccCCccceEEEEEecccc
Q 028194 167 GDGLLFYSLFP--N---GTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 167 G~av~f~n~~~--~---g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|.+++|---+. . |-.-....|.+.-+.+|+++.+-+=||+
T Consensus 190 G~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 190 GDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred CceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 99999974321 2 2234567899999999999999887775
No 31
>PLN02485 oxidoreductase
Probab=93.81 E-value=0.4 Score=41.16 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=54.9
Q ss_pred cceEEecCCCc----------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccc
Q 028194 90 AFNVLRYEIGQ----------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIG 159 (212)
Q Consensus 90 ~~qv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~ 159 (212)
.+++.+|.+-. .-.+|+|.. .+|+|+ .|...|| +...... ...
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~~~G-LqV~~~~------------g~W 237 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLVN--QDDDITA-LQVRNLS------------GEW 237 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC------------eEEEEe--ccCCCCe-eeEEcCC------------CcE
Confidence 48899998632 145677753 577763 4433344 3332111 146
Q ss_pred eEEeeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 160 LKVKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 160 ~~v~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
+.|.|..|.+||-- ..+.||. -..++|+|.+.....||++..+++-
T Consensus 238 i~V~p~pg~~vVNiGD~L~~~TnG~-~~St~HRVv~~~~~~R~Si~~F~~p 287 (329)
T PLN02485 238 IWAIPIPGTFVCNIGDMLKIWSNGV-YQSTLHRVINNSPKYRVCVAFFYET 287 (329)
T ss_pred EECCCCCCcEEEEhHHHHHHHHCCE-eeCCCceecCCCCCCeEEEEEEecC
Confidence 89999999988742 1123333 3678999986655579999887763
No 32
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=93.48 E-value=0.44 Score=39.43 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCC
Q 028194 65 DKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEN 144 (212)
Q Consensus 65 ~~~~~~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~ 144 (212)
|...+++.|++.+.+ +.-.++.+++..|+.|+-++.-.+ ...+..++++=|+.+..||...+-...
T Consensus 30 h~~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~----------~~~~~sr~lvCi~sakkGG~iii~~~~ 95 (266)
T PF06822_consen 30 HVKIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQ----------DNSSLSRILVCIQSAKKGGCIIIRNTI 95 (266)
T ss_pred hHHHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceecccc----------CCCcceeEEEEeeccccCCeEEEeecc
Confidence 444566666666633 334466899999999998763211 234578899999999999988875532
Q ss_pred CcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 145 GIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
.. ..-.++|..|.||+-. +.+...+.+|++|.-..+.
T Consensus 96 ~~-----------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~ 132 (266)
T PF06822_consen 96 SN-----------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIV 132 (266)
T ss_pred cC-----------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEE
Confidence 11 3568999999999985 4788889999999766554
No 33
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=92.70 E-value=0.83 Score=39.20 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=58.1
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+-- -..+|.|.. .+|+| |.|...||=-++.. ++ ..+.|+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~-dg------------~Wi~V~ 229 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTK-DG------------KWIDVP 229 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEec-CC------------eEEECC
Confidence 68888998742 377888853 46777 55545566555541 11 579999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|.+|+.||=- ....|| .-...+|++..-...+|+++..++-
T Consensus 230 P~p~a~vVNiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~~ 274 (322)
T KOG0143|consen 230 PIPGAFVVNIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFVF 274 (322)
T ss_pred CCCCCEEEEcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEec
Confidence 9997766631 112345 3468899999988888988866543
No 34
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=92.55 E-value=0.79 Score=39.73 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=55.1
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+| +.|...|| +..... + ..+.|.
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~v~G-LQV~~~-g------------~Wi~V~ 255 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLL--LPDKDVEG-LQFLKD-G------------KWYKAP 255 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEE--EecCCCCc-eeEeEC-C------------eEEECC
Confidence 37899997621 245787754 57776 44433444 443221 1 468999
Q ss_pred eccCCEEEEe-e---eCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY-S---LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~-n---~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- . .+.||. -..++|++.+...+.||++.-+++
T Consensus 256 p~pg~lVVNiGD~Le~~Tng~-~kSt~HRVv~~~~~~R~Si~fF~~ 300 (348)
T PLN00417 256 IVPDTILINVGDQMEIMSNGI-YKSPVHRVVTNREKERISVATFCI 300 (348)
T ss_pred CCCCcEEEEcChHHHHHhCCe-ecccceEEecCCCCCEEEEEEEec
Confidence 9999988742 0 122333 368999997655668999987766
No 35
>PLN02904 oxidoreductase
Probab=92.33 E-value=0.97 Score=39.33 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=54.2
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. .-.+|+|.. .+|+|+ .|+ || +......+ ..+.|.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~G-LQV~~~~g------------~Wi~V~ 259 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QG-LQIMDCNK------------NWVCVP 259 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--Ce-eeEEeCCC------------CEEECC
Confidence 57889998631 244777753 688885 453 44 54322111 468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||. -..++|++..-...+||++..++.
T Consensus 260 p~pgalVVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 260 YIEGALIVQLGDQVEVMSNGI-YKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred CCCCeEEEEccHHHHHHhCCe-eeccCCcccCCCCCCEEEEEEeec
Confidence 9999988742 0112332 368999996444568999987765
No 36
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=92.16 E-value=0.73 Score=39.96 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=54.5
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. .-.+|+|.. .+|+|+- | ..|| +..... + ..+.|+
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~G-LQV~~~-g------------~Wi~V~ 248 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSG-LQVFKD-G------------KWIAVN 248 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCc-eEEEEC-C------------cEEECC
Confidence 57889998731 245777753 5787743 4 2344 433221 1 468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||. -..++|++.....+.||++..+++-
T Consensus 249 p~pgalvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p 294 (348)
T PLN02912 249 PIPNTFIVNLGDQMQVISNDK-YKSVLHRAVVNTDKERISIPTFYCP 294 (348)
T ss_pred CcCCeEEEEcCHHHHHHhCCE-EEcccccccCCCCCCEEEEEEEecC
Confidence 9999988742 1123343 3688999964445679999877663
No 37
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=92.14 E-value=1.1 Score=38.61 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=53.8
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+|+ .|...|| +.... .+ ..+.|.
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~G-LQV~~-~g------------~Wi~V~ 242 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILL--QDQQVAG-LQVLK-DG------------KWVAVN 242 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEE--ecCCcCc-eEeec-CC------------eEEecc
Confidence 57888898732 145677753 577774 3433444 33222 11 468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||. -..++|++......+||++.-+++
T Consensus 243 p~pg~lVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~ 287 (337)
T PLN02639 243 PHPGAFVINIGDQLQALSNGR-YKSVWHRAVVNTDKERMSVASFLC 287 (337)
T ss_pred CCCCeEEEechhHHHHHhCCe-eeccCcccccCCCCCEEEEEEEec
Confidence 9999988732 0123333 367899996444467999988776
No 38
>PLN02216 protein SRG1
Probab=92.14 E-value=0.88 Score=39.58 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=54.1
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+-. ...+|+|.. .+|+|+--++ .|| +..... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~G-LQV~~~-------------g~Wi~V~ 262 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEG-LQIKKD-------------GKWVSVK 262 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCc-eeEEEC-------------CEEEECC
Confidence 47889997631 245677753 5777744343 344 333221 1568999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||. -..++|++..-....||++..++.
T Consensus 263 p~pgalvVNiGD~L~~~TNG~-~kS~~HRVv~~~~~~R~Si~~F~~ 307 (357)
T PLN02216 263 PLPNALVVNVGDILEIITNGT-YRSIEHRGVVNSEKERLSVATFHN 307 (357)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccCceeecCCCCCEEEEEEEec
Confidence 9999988742 1123443 368899986544568999887765
No 39
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=92.10 E-value=0.92 Score=39.51 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|+. .+|+|+- |. .|| +.....++. ..+.|.
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q--d~-v~G-LQV~~~~~~-----------~Wi~Vp 248 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ--DQ-VGG-LQATRDGGK-----------TWITVQ 248 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec--CC-CCc-eEEEECCCC-----------eEEECC
Confidence 46788898621 255777754 6787744 32 344 443221110 368999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||.. ..++|+|.....+.||++..+++-
T Consensus 249 p~pgalVVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYLSNGRF-KNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred CCCCeEEEEccHHHHHHhCCee-eeecceEECCCCCCEEEEEEEecC
Confidence 9999888742 11234433 688999865555689999877653
No 40
>PLN02947 oxidoreductase
Probab=92.10 E-value=1.3 Score=38.88 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=54.0
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+.. ...+|+|.. .+|+|+- ++ .|| +.... ++ ..+.|+
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~G-LQV~~-~g------------~Wi~V~ 276 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEG-LQIMH-AG------------RWVTVE 276 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCC-eeEeE-CC------------EEEeCC
Confidence 47788888742 245677753 6888855 33 344 43322 11 568999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||.. ..++|++..-....||++..++.
T Consensus 277 p~pga~VVNvGD~Lq~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 277 PIPGSFVVNVGDHLEIFSNGRY-KSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred CCCCeEEEEeCceeeeeeCCEE-eccccccccCCCCCEEEEEEEec
Confidence 9999877732 11234443 68899996544567999887765
No 41
>PLN02997 flavonol synthase
Probab=92.00 E-value=0.47 Score=40.76 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=54.2
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+-. ...+|+|.. .+|+|+. |. .|| +..... + ..+.|+
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d~-v~G-LQV~~~-g------------~Wi~V~ 234 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--NE-VPG-LQAFKD-E------------QWLDLN 234 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--CC-CCC-EEEeEC-C------------cEEECC
Confidence 47889998731 256777753 6788743 32 444 333221 1 468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|.+|.+||-- ....||. -..++|+|..-....||++..+++-
T Consensus 235 p~pgalvVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~fF~~P 280 (325)
T PLN02997 235 YINSAVVVIIGDQLMRMTNGR-FKNVLHRAKTDKERLRISWPVFVAP 280 (325)
T ss_pred CCCCeEEEEechHHHHHhCCc-cccccceeeCCCCCCEEEEEEEecC
Confidence 9999877742 1123443 3678999975445579998777653
No 42
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=91.63 E-value=1.3 Score=38.30 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+|+ .| ..|| +....... ...+.|.
T Consensus 194 ~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~--qd-~v~G-LQV~~~~~-----------g~Wi~V~ 246 (345)
T PLN02750 194 FARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLA--QD-DVGG-LQISRRSD-----------GEWIPVK 246 (345)
T ss_pred EEEEEecCCCCCcccccCcCCCCCCC------------eEEEEe--cC-CCCc-eEEeecCC-----------CeEEEcc
Confidence 58899998631 255777753 577763 33 2344 44321100 1468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||. -..++|+|......+||++..+++-
T Consensus 247 p~pg~~vVNiGD~L~~~Tng~-~~St~HRVv~~~~~~R~Si~~F~~P 292 (345)
T PLN02750 247 PIPDAFIINIGNCMQVWTNDL-YWSAEHRVVVNSQKERFSIPFFFFP 292 (345)
T ss_pred CCCCeEEEEhHHHHHHHhCCe-eecccceeccCCCCCEEEEEEeecC
Confidence 9999888731 1123443 3689999975545679999877663
No 43
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=91.57 E-value=1.2 Score=37.91 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCCcceEEecCC------CcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccce
Q 028194 87 HGEAFNVLRYEI------GQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGL 160 (212)
Q Consensus 87 ~~E~~qv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~ 160 (212)
.++.++++||.. ++.-+.|.|+. .+|+| +.| ..||=-+.+..+ ..+
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd-~~~GLqv~~~~g-------------~Wl 223 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQD-DVGGLEVRPPNG-------------GWL 223 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEE--Eec-ccCCeEEecCCC-------------Cee
Confidence 456799999994 34457888864 45555 445 355644444321 569
Q ss_pred EEeeccCCEEEEee----eCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 161 KVKPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 161 ~v~P~~G~av~f~n----~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
.|.|..|..||..- ...+|. -..+.|.|+--..=+||++--++.
T Consensus 224 ~v~P~pgtlvVNiGdmLe~~Tng~-lrST~HRV~~~~~~~R~SipfF~~ 271 (322)
T COG3491 224 DVPPIPGTLVVNIGDMLERWTNGR-LRSTVHRVRNPPGVDRYSIPFFLE 271 (322)
T ss_pred ECCCCCCeEEEeHHHHHHHHhCCe-eccccceeecCCCccceeeeeecc
Confidence 99999999999741 123343 368999998776338888865543
No 44
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=91.48 E-value=1.4 Score=38.40 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=54.3
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+|+. |. .|| +.....++ ..+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q--d~-v~G-LQV~~~~~------------~Wi~V~ 262 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ--SN-TSG-LQVFREGV------------GWVTVP 262 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec--CC-CCC-ceEECCCC------------EEEEcc
Confidence 46788898731 256777753 6888864 32 344 43322110 368999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||. -..++|++..-...+||++..+++
T Consensus 263 p~pgalVVNiGD~lq~~SNg~-~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 263 PVPGSLVVNVGDLLHILSNGR-FPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred cCCCCEEEEhHHHHHHHhCCe-eccccceeecCCCCCEEEEEEEec
Confidence 9999998842 1123443 368899996444457999877765
No 45
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=91.44 E-value=0.83 Score=38.83 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=52.7
Q ss_pred ceEEecCCC----cc--cccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEee
Q 028194 91 FNVLRYEIG----QK--YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKP 164 (212)
Q Consensus 91 ~qv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P 164 (212)
+++.+|.+- .. ..+|+|.. .+|+|+ .+...|| +.... ++ ..+.|.|
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL~--q~~~v~G-LqV~~-~g------------~Wi~V~p 206 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILLL--QDDQVPG-LEFLK-DG------------KWVPIPP 206 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEEE--ecCCCCc-eEecc-CC------------eEEECCC
Confidence 789999762 11 45788754 466663 3322344 44422 11 4688999
Q ss_pred ccCCEEEEee-----eCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 165 RRGDGLLFYS-----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 165 ~~G~av~f~n-----~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
..|.+++-.- .+.||. -..++|++.....+.||++.-+++-
T Consensus 207 ~p~~~lvVNvGD~L~~~Tng~-~~S~~HRVv~~~~~~R~Si~~F~~p 252 (303)
T PLN02403 207 SKNNTIFVNTGDQLEVLSNGR-YKSTLHRVMADKNGSRLSIATFYNP 252 (303)
T ss_pred CCCCEEEEEehHHHHHHhCCe-eecccceeecCCCCCEEEEEEEEcC
Confidence 9965443321 123443 3688999986666789999877663
No 46
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=91.34 E-value=1.8 Score=37.12 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=55.3
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+| +.|...|| +..... ...+.|+
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~G-LQV~~~-------------g~Wi~V~ 210 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSG-LQLLKD-------------GEWVDVP 210 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCC-cCcccC-------------CeEEECC
Confidence 37899998621 255788854 57777 44433444 433221 1468899
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ....||.. ..++|++.....+.||++..+++
T Consensus 211 p~pg~lvVNiGD~l~~~Tng~~-kS~~HRVv~~~~~~R~Si~~F~~ 255 (321)
T PLN02299 211 PMRHSIVVNLGDQLEVITNGKY-KSVMHRVVAQTDGNRMSIASFYN 255 (321)
T ss_pred CCCCeEEEEeCHHHHHHhCCce-ecccceeecCCCCCEEEEEEEec
Confidence 9999988742 01234433 68899997555678999987766
No 47
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=91.32 E-value=1.8 Score=37.72 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred cceEEecCCC----c--ccccccccCCCCCCCCCCCcceEEEEEeeccc-cCCccccCCCCCCcccCCCCCcccccceEE
Q 028194 90 AFNVLRYEIG----Q--KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENGIFLDSGYDYKKCIGLKV 162 (212)
Q Consensus 90 ~~qv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v 162 (212)
-+++.+|.+- . .-.+|+|.. .+|+|+ .|. ..|| +..... + ..+.|
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~G-LQV~~~-g------------~Wi~V 263 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVG-LQILKD-N------------TWVPV 263 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCC-eeeeeC-C------------EEEeC
Confidence 4778888752 1 135777753 678774 443 3445 433221 1 46899
Q ss_pred eeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 163 KPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 163 ~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
.|..|.+||-- ..+.||. -..++|++..-...+||++..+++
T Consensus 264 ~p~pgalVVNiGD~L~~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 264 HPVPNALVINIGDTLEVLTNGK-YKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred CCCCCeEEEEccchhhhhcCCe-eecccceeecCCCCCEEEEEEEec
Confidence 99999888743 1123443 368899997544457999887765
No 48
>PHA02985 hypothetical protein; Provisional
Probab=91.15 E-value=1.2 Score=36.80 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=71.8
Q ss_pred CChhHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCC
Q 028194 64 EDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFE 143 (212)
Q Consensus 64 ~~~~~~~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~ 143 (212)
+|...+.+.+++++.+ +.-..+.+++..|+.|+.|.. ....++..+|+=+..+..||.......
T Consensus 36 ~h~~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~------------~~~~~~SkilICiqsAkkGG~iIi~~~ 99 (271)
T PHA02985 36 EHQKIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQ------------NIPSRLSKIIICIQSAKKGGCIIIINN 99 (271)
T ss_pred hhhhHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEe------------eCCCCceeEEEEEeecccCCEEEEecc
Confidence 3445677777777633 223456789999998865432 123567889999999999998886431
Q ss_pred CCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 144 NGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
.-. ..-.++|..|.||+-. +.+-..+.||.+|.-.++.
T Consensus 100 ~~~-----------~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~ 137 (271)
T PHA02985 100 ITN-----------NKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIV 137 (271)
T ss_pred ccc-----------CceEEecCCCeEEEec---------chhhceEEEecCCcEEEEE
Confidence 110 3568999999999986 4788889999999765554
No 49
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=91.15 E-value=1 Score=38.12 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHhhCC-CCCC----CCcceEEecCCC-----c-ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 74 EHKIARATML-PQTH----GEAFNVLRYEIG-----Q-KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 74 ~~ri~~~~g~-~~~~----~E~~qv~rY~~G-----~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
.+-++..+|+ +... ...+++++|.+- + .-.+|+|.. .+|+|+. |...|| +....
T Consensus 129 l~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~G-LqV~~ 193 (300)
T PLN02365 129 ARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGG-LEVMD 193 (300)
T ss_pred HHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCc-eEEEE
Confidence 3333444677 4321 235889999542 1 244677743 5787743 433344 44322
Q ss_pred CCCcccCCCCCcccccceEEeeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 143 ENGIFLDSGYDYKKCIGLKVKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
... ...+.|.|..|.+||-- ..+.||. -..++|++......+||++..++.
T Consensus 194 ~~~-----------g~Wi~V~p~pga~vVNiGD~l~~~TNG~-~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 194 PSS-----------GEFVPVDPLPGTLLVNLGDVATAWSNGR-LCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred CCC-----------CeEEecCCCCCeEEEEhhHHHHHHhCCc-eecccceeEcCCCCCEEEEEEEec
Confidence 100 04689999999988732 1123443 368899997655557999887754
No 50
>PLN02276 gibberellin 20-oxidase
Probab=90.96 E-value=1.8 Score=37.77 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=54.3
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+.. .-.+|+|.. .+|+|+- | ..|| +.... . ...+.|+
T Consensus 207 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~G-LQV~~-~------------g~Wi~V~ 257 (361)
T PLN02276 207 IMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGG-LQVFV-D------------NKWRSVR 257 (361)
T ss_pred eeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCc-eEEEE-C------------CEEEEcC
Confidence 57888997641 245777753 6787753 4 3444 43322 1 1568999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|..|.+||-- ..+.||. -..++|++..-....||++..+++
T Consensus 258 p~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 258 PRPGALVVNIGDTFMALSNGR-YKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred CCCCeEEEEcHHHHHHHhCCc-cccccceeecCCCCCEEEEEEEec
Confidence 9999988853 1122333 368999986444568999987776
No 51
>PLN02704 flavonol synthase
Probab=89.59 E-value=0.83 Score=39.35 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=53.3
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+-. ...+|+|.. .+|+|+- |. .|| +.... . ...+.|+
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~G-LQV~~-~------------g~Wi~V~ 250 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQG-LQVFR-D------------DHWFDVK 250 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCc-eeEeE-C------------CEEEeCC
Confidence 36778887631 245777754 5777744 32 344 44322 1 1468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||. -..++|++..-....||++..+++-
T Consensus 251 p~pg~lvVNvGD~L~~~TNg~-~kSt~HRVv~~~~~~R~Si~~F~~p 296 (335)
T PLN02704 251 YIPNALVIHIGDQIEILSNGK-YKSVLHRTTVNKEKTRMSWPVFLEP 296 (335)
T ss_pred CCCCeEEEEechHHHHHhCCe-eecccceeecCCCCCeEEEEEEecC
Confidence 9999877742 0122333 3689999975445679999877763
No 52
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=89.03 E-value=3.7 Score=31.82 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcc
Q 028194 68 GILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIF 147 (212)
Q Consensus 68 ~~~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~ 147 (212)
+.+..|.++++...|.+....+..-|..|.+|+.-.+|.|..... ...-++++-+ |..-.|-.....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~-----~~~pI~SvSL-------G~~r~F~~~~~~- 140 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPD-----LRAPLLSVSL-------GLPAIFLIGGLK- 140 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccccc-----CCCCEEEEeC-------CCCEEEEecCCc-
Confidence 467888899999888765556677899999999999999942211 1222333331 222222211000
Q ss_pred cCCCCCcccccceEEeeccCCEEEEe
Q 028194 148 LDSGYDYKKCIGLKVKPRRGDGLLFY 173 (212)
Q Consensus 148 ~~~~~~~~~~~~~~v~P~~G~av~f~ 173 (212)
.+....++.-..|++|++.
T Consensus 141 -------~~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 141 -------RNDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred -------CCCceEEEEeCCCCEEEEC
Confidence 0013578999999999994
No 53
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=88.17 E-value=2.5 Score=36.84 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=53.6
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
.+++.+|.+-. ...+|+|.. .+|+|+. | ..|| +..... + ..+.|.
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~G-LQV~~~-g------------~Wi~V~ 262 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPG-LQVLYE-G------------KWVTAK 262 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCc-eeEeEC-C------------EEEEcC
Confidence 47888897521 245788764 5788843 3 2344 444321 1 568999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||. -..++|++..-....||++..+++-
T Consensus 263 p~pg~lvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P 308 (360)
T PLN03178 263 CVPDSIVVHIGDTLEILSNGR-YKSILHRGLVNKEKVRISWAVFCEP 308 (360)
T ss_pred CCCCeEEEEccHHHHHHhCCc-cccccceeecCCCCCeEEEEEEecC
Confidence 9999877632 0022333 3688999854334579999887763
No 54
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=87.66 E-value=2.4 Score=38.71 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred ccccccCCCCCCCCCCCcceEEEEEeeccc-cCCccccCCCCCC-cc------cCC-C-------CCccc---c--cceE
Q 028194 103 DSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENG-IF------LDS-G-------YDYKK---C--IGLK 161 (212)
Q Consensus 103 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~~-~~------~~~-~-------~~~~~---~--~~~~ 161 (212)
.||+++.. +.+-.+|.|.|+.-. -....+.|-.... .. .+. . ++... + .-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 68888764 456789999999743 2234555543321 11 000 0 01111 1 1126
Q ss_pred EeeccCCEEEEeeeCCCCCcCCCCcccccCCc------cceEEEEEecccc
Q 028194 162 VKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI------KGEKWVATKWIRD 206 (212)
Q Consensus 162 v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~------~G~K~~~~~W~~~ 206 (212)
|.-+.|++|+|+| ...|.+.|.. .|.+-+++.|+-+
T Consensus 437 v~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLvD 478 (501)
T PF14033_consen 437 VETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLVD 478 (501)
T ss_pred EEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEecC
Confidence 8889999999999 5677777543 3878888888644
No 55
>PTZ00273 oxidase reductase; Provisional
Probab=87.44 E-value=6.5 Score=33.54 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=52.6
Q ss_pred cceEEecCCCc-------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEE
Q 028194 90 AFNVLRYEIGQ-------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 162 (212)
Q Consensus 90 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v 162 (212)
.+++.+|.+.. .-.+|+|.. .+|+|+ .|. .|| +......+ ..+.|
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~-~~G-LqV~~~~g------------~Wi~V 229 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QDS-VGG-LQVRNLSG------------EWMDV 229 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cCC-CCc-eEEECCCC------------CEEeC
Confidence 47889997631 134677753 678874 342 344 44321111 46899
Q ss_pred eeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 163 KPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 163 ~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
.|..|.+||-- ..+.||. -..++|+|... ..+||++..+++
T Consensus 230 ~p~pg~lvVNvGD~l~~~TnG~-~kSt~HRVv~~-~~~R~Si~~F~~ 274 (320)
T PTZ00273 230 PPLEGSFVVNIGDMMEMWSNGR-YRSTPHRVVNT-GVERYSMPFFCE 274 (320)
T ss_pred CCCCCeEEEEHHHHHHHHHCCe-eeCCCccccCC-CCCeEEEEEEEc
Confidence 99999988742 1123343 35799999743 357999887765
No 56
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=87.33 E-value=4.6 Score=35.16 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=52.7
Q ss_pred cceEEecCCCc------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEe
Q 028194 90 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 163 (212)
Q Consensus 90 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~ 163 (212)
-+++.+|.+-. .-.+|+|.. .+|+|+- +...|| +..... ...+.|.
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~G-LQV~~~-------------g~W~~V~ 265 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAG-LQVRRD-------------DAWITVK 265 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCc-ceeeEC-------------CEEEECC
Confidence 47788886521 255777754 5677633 322344 333221 1468999
Q ss_pred eccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 164 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 164 P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
|..|.+||-- ..+.||. -..++|++..-...+||++.-+++-
T Consensus 266 p~pgalVVNiGD~l~~~Tng~-~kSt~HRVv~~~~~~R~SiafF~~P 311 (362)
T PLN02393 266 PVPDAFIVNIGDQIQVLSNAI-YKSVEHRVIVNSAKERVSLAFFYNP 311 (362)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccceecccCCCCCEEEEEEEecC
Confidence 9999988742 0112332 3678999964444579999887764
No 57
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=87.04 E-value=0.57 Score=38.15 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=55.3
Q ss_pred ccEEEecCCCCHHHHHHHHHHhcc-CceecEEeecCCc----eeeeccceeeeceeeeCCCCChhHHHHHHHHHHHHhhC
Q 028194 8 PRALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGE----TVESTKGTRTSSGTFISASEDKTGILELIEHKIARATM 82 (212)
Q Consensus 8 P~i~~i~~fLs~~ec~~li~~~~~-~~~~s~v~~~~g~----~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~~~g 82 (212)
|.|.+++||||.+|-..|++.... .+..|.-..++.. .+...++.|+. .|..-. ...+.+.+|+..+-+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~--~F~G~P----~~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTD--TFVGMP----EYADMVLRRMSEYPV 145 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccC--cccCCc----hHHHHHHHHhhccch
Confidence 789999999999999999999865 3433322111111 01112334443 233322 367788888877643
Q ss_pred CCCCCCCcce--EEecCC--CcccccccccCC
Q 028194 83 LPQTHGEAFN--VLRYEI--GQKYDSHYDAFN 110 (212)
Q Consensus 83 ~~~~~~E~~q--v~rY~~--G~~y~~H~D~~~ 110 (212)
+.. ..++. =+-|.| |.--.+|.|..+
T Consensus 146 l~g--fqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 146 LKG--FQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hhc--cCcHHHcCcccccccCCccCccccchh
Confidence 321 11111 134665 888999999754
No 58
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=86.95 E-value=6.3 Score=33.99 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=55.0
Q ss_pred cceEEecCCCc------c--cccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceE
Q 028194 90 AFNVLRYEIGQ------K--YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLK 161 (212)
Q Consensus 90 ~~qv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~ 161 (212)
.+++.+|.+-. . -.+|+|.. .+|+|+- | ..|| +...... ...+.
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~G-LQV~~~~------------g~Wi~ 230 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS--N-DTAG-LQICVKD------------GTWVD 230 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe--C-CCCc-eEEEeCC------------CCEEE
Confidence 58899997632 1 34577743 6787744 3 2344 4432111 14689
Q ss_pred EeeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 162 VKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 162 v~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
|.|..|.+||-- ..+.||.. ..++|++......+||++..+++
T Consensus 231 Vpp~pga~VVNiGD~l~~wTNg~~-kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 231 VPPDHSSFFVLVGDTLQVMTNGRF-KSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred ccCCCCcEEEEhHHHHHHHhCCee-eccceeeecCCCCCEEEEEEeec
Confidence 999999988742 11234433 68999998666668999987765
No 59
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.93 E-value=4.1 Score=35.03 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=53.1
Q ss_pred cceEEecCCCc-------ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEE
Q 028194 90 AFNVLRYEIGQ-------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 162 (212)
Q Consensus 90 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v 162 (212)
.+++.+|.+-. ...+|+|.. .+|+|+ .| ..||==+...... . +...+.|
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~v~GLQV~~~~~~--~-------~g~Wi~V 238 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLA--TD-GVMGLQICKDKNA--M-------PQKWEYV 238 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEe--eC-CCCceEEecCCCC--C-------CCcEEEC
Confidence 47899998731 145677753 688884 34 2344222221100 0 0146889
Q ss_pred eeccCCEEEEe----eeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 163 KPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 163 ~P~~G~av~f~----n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
.|..|.+||-- ..+.||.. ..++|+|..- ...||++.-+++-
T Consensus 239 pp~pg~~VVNiGD~L~~wTng~~-kSt~HRVv~~-~~~R~Sia~F~~p 284 (332)
T PLN03002 239 PPIKGAFIVNLGDMLERWSNGFF-KSTLHRVLGN-GQERYSIPFFVEP 284 (332)
T ss_pred CCCCCeEEEEHHHHHHHHhCCee-ECcCCeecCC-CCCeeEEEEEecC
Confidence 99999988742 11233333 6889999643 4579998877653
No 60
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=83.33 E-value=0.21 Score=44.29 Aligned_cols=70 Identities=30% Similarity=0.320 Sum_probs=55.0
Q ss_pred CcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEE
Q 028194 119 SQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKW 198 (212)
Q Consensus 119 ~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~ 198 (212)
.-+......|+||.++||+..|...+..+ ....++|+.|+.+-|.+- ..-.|.+.+|++|.+-
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t----------~~a~~k~~~~re~~~~~g-------~e~~~~~~~~~kg~e~ 426 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKT----------YTAISKPECGRECAFSSG-------AENPHGVKAVTKGLEC 426 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccc----------hhhccccccccchhhhcc-------ccCccchhhhhhhhHH
Confidence 45678889999999999999996543322 467899999999999752 3557999999999877
Q ss_pred EEEeccc
Q 028194 199 VATKWIR 205 (212)
Q Consensus 199 ~~~~W~~ 205 (212)
.+..|..
T Consensus 427 ~~~lw~~ 433 (471)
T KOG4459|consen 427 AVALWPT 433 (471)
T ss_pred hhhcCcc
Confidence 7777754
No 61
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=82.65 E-value=1.2 Score=36.15 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=29.5
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCC--ccceEEEEEec
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPV--IKGEKWVATKW 203 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV--~~G~K~~~~~W 203 (212)
..+.++-++|++|||.| .+++|+..+. ..|.|+..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 45778888999999998 7999999998 56889999988
No 62
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=82.46 E-value=1.2 Score=35.37 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCcc----eEEecCC--Cc-----ccccccccCCCCCCCCCCCcceEEEEEeeccccCCc
Q 028194 68 GILELIEHKIARATMLPQTHGEAF----NVLRYEI--GQ-----KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGG 136 (212)
Q Consensus 68 ~~~~~l~~ri~~~~g~~~~~~E~~----qv~rY~~--G~-----~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG 136 (212)
++++.|-.....+++......+++ +-.|+.. +. -=..|.|+. .-++.++|--+++ +||
T Consensus 71 ~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~----------d~v~~~li~r~Ni-~GG 139 (195)
T PF10014_consen 71 PVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV----------DFVFIHLINRHNI-EGG 139 (195)
T ss_dssp HHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SS----------SEEEEEEEEEESE-EE-
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC----------CEEEEEEEcCCCc-cCc
Confidence 556666666666655443222232 2333332 11 133455543 4566666666565 899
Q ss_pred cccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCcc
Q 028194 137 ETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 194 (212)
Q Consensus 137 eT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~ 194 (212)
+|........ .....---..|+.+++. |...+|.+.||..
T Consensus 140 ~s~i~~~~~~----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 140 ESQIYDNDKE----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp -EEEEETTSS----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred eEEEEeCCCC----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 8887543211 02344556678888885 6899999999986
No 63
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.13 E-value=3.6 Score=32.42 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=31.3
Q ss_pred EEeeccc--cCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCcc
Q 028194 126 LLYLSDV--EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 194 (212)
Q Consensus 126 liYLnd~--~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~ 194 (212)
.|++-|- -.||||..+.....+ ..+.---..|.+++-. |.+.+|.+||+.-
T Consensus 149 ~I~~vDR~NI~gGet~lY~~~~~~----------p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 149 IIMLVDRQNIDGGETDLYAPDGAS----------PGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEeeeccccCceEEEEccCCCC----------cceEEeccCCcEEEec--------cchhcccccceec
Confidence 3445553 479999987643211 2333334456655443 7899999999875
No 64
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=78.04 E-value=2.9 Score=34.34 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=33.6
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCcc---ceEEEEEeccc
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK---GEKWVATKWIR 205 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~---G~K~~~~~W~~ 205 (212)
..+.++-++|++|+|.| .+++|+-.+-.. +.||....|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 35688899999999998 799999988764 47999999875
No 65
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.68 E-value=13 Score=31.41 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=52.6
Q ss_pred ccccccccCCCCCCCCCCCcceEEEEEeecccc-CCccccC-CCCCCcc--c-CC-CCCcccccceEEeeccCCEEEEee
Q 028194 101 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE-EGGETMF-PFENGIF--L-DS-GYDYKKCIGLKVKPRRGDGLLFYS 174 (212)
Q Consensus 101 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~--~-~~-~~~~~~~~~~~v~P~~G~av~f~n 174 (212)
.=.+|.|..... ....-...+.+=|-|.. +-|.|.+ |....-. . .. ...+.+...+-|.-.+|+||+|.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 467999954332 34555777888888874 4577765 5432111 1 00 11233334677888899999995
Q ss_pred eCCCCCcCCCCcccccCCccce
Q 028194 175 LFPNGTIDRTSLHGSCPVIKGE 196 (212)
Q Consensus 175 ~~~~g~~d~~~~H~~~pV~~G~ 196 (212)
..++|++---+.+.
T Consensus 207 --------~~L~HaA~aNrT~~ 220 (299)
T COG5285 207 --------GSLWHAAGANRTSA 220 (299)
T ss_pred --------chhhhhhhcCCCCc
Confidence 59999998888773
No 66
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=60.12 E-value=14 Score=25.27 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=29.8
Q ss_pred EEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 126 LLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 126 liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+.-++|...|+...|...+ ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 3445666566655554321 23455555677777766 899999998765
No 67
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=59.79 E-value=15 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=32.1
Q ss_pred EEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 124 SFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 124 T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+.+.-++|..+|+...|... ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~--------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS--------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC--------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 44556777777776666431 12444445777777765 889999998644
No 68
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=56.78 E-value=17 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=19.0
Q ss_pred EEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 161 KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 161 ~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
-++...|....|.| ...|.++|+..|
T Consensus 27 l~r~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 27 VFRTADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred EEEeCCCCEEEEcC---------cCCCCCCCccCC
Confidence 34444577777765 899999998876
No 69
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=53.94 E-value=19 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 160 LKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 160 ~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+.++...|....|.| .+.|.++|+..|
T Consensus 26 ~~~~~~~g~~~A~~n---------~CpH~g~~L~~g 52 (108)
T cd03474 26 LLVAPEGGEFRAFQG---------ICPHQEIPLAEG 52 (108)
T ss_pred EEEEccCCeEEEEcC---------cCCCCCCCcccC
Confidence 456667777777766 888999988765
No 70
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=51.91 E-value=17 Score=31.59 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.1
Q ss_pred ceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccc
Q 028194 159 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 205 (212)
Q Consensus 159 ~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~ 205 (212)
.+.++=++|++|+|.| .+++|+...-. |.||..-.++-
T Consensus 312 ~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d 349 (362)
T TIGR02410 312 EIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLT 349 (362)
T ss_pred EEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEc
Confidence 5678888999999998 79999998875 88888877764
No 71
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=50.74 E-value=12 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.2
Q ss_pred ccccccCCCCCCCCCCCcceEEEEEeeccccCCccccC
Q 028194 103 DSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMF 140 (212)
Q Consensus 103 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~F 140 (212)
.||.|..... ..-.+++|.-+.-+.+||+|.|
T Consensus 95 ~wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~f 126 (277)
T PRK09553 95 NWHTDVTFIE------TPPLGAILAAKQLPSTGGDTLW 126 (277)
T ss_pred CCeecccCee------CCCceeEEEEEecCCCCCccHh
Confidence 4999987643 2234677777777788999998
No 72
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=49.10 E-value=18 Score=26.19 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=32.5
Q ss_pred EEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 123 ASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 123 ~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+..+.-+++..++|...+....+. .-+-++-..|..-.|.| ...|.+.|+..|
T Consensus 3 w~~v~~~~el~~~g~~~~~~~~~~-----------~iiv~r~~~g~~~A~~n---------~CpHrg~~L~~g 55 (123)
T cd03535 3 WVFLGHESEIPNAGDYVVRYIGDD-----------SFIVCRDEDGEIRAMFN---------SCRHRGMQVCRA 55 (123)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCe-----------EEEEEECCCCCEEEEcc---------cCccCCCEeecc
Confidence 344555677777665444322110 12444556788888876 889999998765
No 73
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=48.96 E-value=26 Score=25.80 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=42.2
Q ss_pred cceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccce-EEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceE-
Q 028194 120 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGL-KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEK- 197 (212)
Q Consensus 120 ~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~-~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K- 197 (212)
.+.+..+..+.+..+|+-..|...+ ..+ -++-..|.+-.|.| .+.|.+.|+..|.-
T Consensus 15 ~~~W~~v~~~~el~~~~~~~~~v~g-------------~~ivl~r~~~G~v~A~~n---------~CpHrga~L~~G~~~ 72 (134)
T cd04338 15 REEWYPLYLLKDVPTDAPLGLSVYD-------------EPFVLFRDQNGQLRCLED---------RCPHRLAKLSEGQLI 72 (134)
T ss_pred ccCcEEEEEHHHCCCCCCEEEEECC-------------ceEEEEEcCCCCEEEEcC---------cCCCCcCcccCCeec
Confidence 4568888889999888765553321 223 33456788888876 89999999988742
Q ss_pred -EEEEeccc
Q 028194 198 -WVATKWIR 205 (212)
Q Consensus 198 -~~~~~W~~ 205 (212)
=.++..+|
T Consensus 73 ~~~i~CP~H 81 (134)
T cd04338 73 DGKLECLYH 81 (134)
T ss_pred CCEEEccCC
Confidence 13444444
No 74
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=48.49 E-value=13 Score=32.90 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCcceEEEEEeeccccCCccccCCCCCCcc-cCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce
Q 028194 118 MSQRLASFLLYLSDVEEGGETMFPFENGIF-LDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE 196 (212)
Q Consensus 118 ~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~-~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~ 196 (212)
...|-.|+.+||.+.++||++.|-.....+ ... .+.. .-+...=..|-+++..+ .+.|...+.+.|.
T Consensus 279 ~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~--EiFdn~h~p~qa~LHrg---------~~~~~a~~~~~~~ 346 (415)
T KOG1971|consen 279 VDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLW--EIFDNSHDPGQAYLHRG---------YHKHGARATIVGQ 346 (415)
T ss_pred cchhhcceeEEecccccCCeeEeeccccccccCC-Cchh--hhccCcCCCccceecCc---------chhccccccCCCC
Confidence 457899999999999999999996642211 100 0000 12333344677888876 5666666656666
Q ss_pred EEEEEeccc
Q 028194 197 KWVATKWIR 205 (212)
Q Consensus 197 K~~~~~W~~ 205 (212)
.+.-..|+.
T Consensus 347 ~~~nv~~~~ 355 (415)
T KOG1971|consen 347 PCPNVYWFP 355 (415)
T ss_pred CCCceeeeh
Confidence 555556654
No 75
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=47.66 E-value=22 Score=25.88 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=32.1
Q ss_pred EEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 125 FLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 125 ~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.+.-+++..++|....-...+. .-+-++...|.+-.|.| ...|++.++..|
T Consensus 3 ~v~~~~elp~~g~~~~~~~~~~-----------~i~l~r~~~g~v~A~~n---------~C~Hrg~~L~~g 53 (123)
T cd03542 3 YLAHESQIPNNNDYFTTTIGRQ-----------PVVITRDKDGELNAFIN---------ACSHRGAMLCRR 53 (123)
T ss_pred EeEEHHHCCCCCCEEEEEECCc-----------EEEEEECCCCCEEEEcc---------cCcCCCCccccc
Confidence 4455677777665433221110 23455667888888887 889999998765
No 76
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=47.06 E-value=28 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=22.9
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE 196 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~ 196 (212)
..+.++...|....|.| ...|.++|+..|.
T Consensus 25 ~~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 25 KLVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred cEEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 34666677888888876 8999999998884
No 77
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=46.57 E-value=23 Score=30.81 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=31.7
Q ss_pred ceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCc--cceEEEEEeccc
Q 028194 159 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI--KGEKWVATKWIR 205 (212)
Q Consensus 159 ~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~--~G~K~~~~~W~~ 205 (212)
.+..+=++|++|+|.| .+++|+..+-. .|.|+....++.
T Consensus 313 ~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d 353 (366)
T TIGR02409 313 KFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYAD 353 (366)
T ss_pred EEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEc
Confidence 4677888999999998 79999998875 578888777664
No 78
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=45.58 E-value=32 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=39.3
Q ss_pred cceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 120 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 120 ~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.+.+..+..+++..+|.-+.|.-.+. .-+-++...|.+-.|.| .+.|.++|+..|
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~v~g~------------~l~l~r~~~g~v~A~~n---------~CpH~g~~L~~G 69 (129)
T cd04337 15 RNFWYPVEFSKDLKMDTMVPFELFGQ------------PWVLFRDEDGTPGCIRD---------ECAHRACPLSLG 69 (129)
T ss_pred hCccEEEEEHHHCCCCCeEEEEECCc------------EEEEEECCCCcEEEEeC---------cCCCCcCCcccC
Confidence 45677778888888777666654221 23455667788888876 899999999877
No 79
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=44.47 E-value=66 Score=24.50 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=45.0
Q ss_pred CcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCC
Q 028194 89 EAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGD 168 (212)
Q Consensus 89 E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~ 168 (212)
....+.+-.||....+|.|... -.+++.+=|..+ .+|... -. .+..+.=+.|.
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~----------~~lR~Hl~L~~p-~~~~~~-~v---------------~~~~~~w~~G~ 132 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTN----------LRLRLHLPLIVP-NPGCYI-RV---------------GGETRHWREGE 132 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-T----------TEEEEEEEEC---STTEEE-EE---------------TTEEEB--CTE
T ss_pred hhEEEEEECCCCEECCeeCCCC----------cceEEEEEEEcC-CCCeEE-EE---------------CCeEEEeccCc
Confidence 3567888899999999999653 126666666554 222111 11 34456668899
Q ss_pred EEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 169 GLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 169 av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
+++|. ....|++-=--...|.++-
T Consensus 133 ~~~fD---------~s~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 133 CWVFD---------DSFEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEE----------TTS-EEEEESSSS-EEEEE
T ss_pred EEEEe---------CCEEEEEEeCCCCCEEEEE
Confidence 99994 5888988765556676553
No 80
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=43.50 E-value=24 Score=25.86 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=35.1
Q ss_pred ceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 121 R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+.+..+..+++..++|.......++. .-+-++...|.+-.|.| .+.|.++|+..|
T Consensus 7 ~~W~~v~~~~el~~~g~~~~~~~~~~-----------~i~l~r~~~g~i~A~~n---------~C~Hrg~~L~~g 61 (128)
T cd03472 7 RSWLLLGHETHIPKAGDYLTTYMGED-----------PVIVVRQKDGSIRVFLN---------QCRHRGMRICRS 61 (128)
T ss_pred CCCeEeEEHHHCCCCCCEEEEEECCc-----------eEEEEECCCCCEEEEhh---------hCcCCCCeeecc
Confidence 44666777888877665321111110 12456677888888877 899999998765
No 81
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=43.18 E-value=39 Score=28.21 Aligned_cols=91 Identities=20% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccc------cCCccccCCCCCCcc
Q 028194 74 EHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV------EEGGETMFPFENGIF 147 (212)
Q Consensus 74 ~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~------~~GGeT~Fp~~~~~~ 147 (212)
.+.++.+||+.+. ...+++-|+.+|.-|..=+|.. .....+-+.++|+.. .-||-+.+....+..
T Consensus 123 ~~~L~~~TgL~l~-~~~~~~RRfr~G~dYTLa~~~~--------~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~d~~~ 193 (266)
T PF10637_consen 123 FKWLSNLTGLDLT-SCQIEARRFRPGLDYTLATDED--------EEEPRLDVTLCLTPSKGWESGEVGGYECYMAGDDDD 193 (266)
T ss_dssp HHHHHHHHSEEE--EEEEEEEEE-TTT-EE--B-----------EEEEEEEEEEEE---S-TTTTTT---EEEEE-----
T ss_pred HHHHHHHHCCCCc-cCceEEEEccCCCCeEEecCCC--------CCceEEEEEEEecCCCCCCCCccccEEEEEcCCCCc
Confidence 4445667888653 3458899999998888666643 234577888888854 458877775322111
Q ss_pred -cCCC-----CCcccccceEEeeccCCEEEEe
Q 028194 148 -LDSG-----YDYKKCIGLKVKPRRGDGLLFY 173 (212)
Q Consensus 148 -~~~~-----~~~~~~~~~~v~P~~G~av~f~ 173 (212)
.++. .+.-+..-++|.|.-.++-+-+
T Consensus 194 ~~d~avY~~~~~~ed~~Llt~~p~~N~LsLVl 225 (266)
T PF10637_consen 194 DEDPAVYKSSDDDEDEELLTVPPSWNSLSLVL 225 (266)
T ss_dssp ----------------EEEEE---EEEEEEEE
T ss_pred cccccceeccccCCCceeEEccCCCCeEEEEE
Confidence 0000 0001113577888877665544
No 82
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=42.81 E-value=49 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.4
Q ss_pred cEEEecCCCCHHHHHHHHHHhc
Q 028194 9 RALYFPNFASAEQCQSIIATAK 30 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~ 30 (212)
.++.+..||++++.+.|.+...
T Consensus 62 pvi~i~~~l~~~d~~~i~~~i~ 83 (85)
T cd05568 62 PVIVVSPILTEEDIKKIRKFIK 83 (85)
T ss_pred CEEEECCCCCHHHHHHHHHHHh
Confidence 6899999999999999988753
No 83
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=41.61 E-value=63 Score=23.88 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=42.9
Q ss_pred cceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceE-Eeec-cCCEEEEeeeCCCCCcCCCCcccccCCccceE
Q 028194 120 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLK-VKPR-RGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEK 197 (212)
Q Consensus 120 ~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~-v~P~-~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K 197 (212)
.+.+..+..++++.+|+-+.|...+ ..+. ++-. .|.+-.|.| .+.|.+.|+..|..
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~~~g-------------~~i~v~r~~~dG~~~A~~n---------~CpHrga~L~~G~~ 72 (138)
T cd03480 15 REVWYPVAYVEDLDPSRPTPFTLLG-------------RDLVIWWDRNSQQWRAFDD---------QCPHRLAPLSEGRI 72 (138)
T ss_pred ccceEEEEEHHHCCCCCcEEEEECC-------------eeEEEEEECCCCEEEEEcC---------CCcCCcCccccceE
Confidence 4567778888998887655554321 2233 3333 788888876 89999999998842
Q ss_pred ---EEEEecccc
Q 028194 198 ---WVATKWIRD 206 (212)
Q Consensus 198 ---~~~~~W~~~ 206 (212)
=.++..+|.
T Consensus 73 ~~~~~i~CP~Hg 84 (138)
T cd03480 73 DEEGCLECPYHG 84 (138)
T ss_pred cCCCEEEeCCCC
Confidence 256666553
No 84
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=41.00 E-value=15 Score=32.62 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=18.8
Q ss_pred eEEe-eccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEecccc
Q 028194 160 LKVK-PRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 206 (212)
Q Consensus 160 ~~v~-P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~ 206 (212)
+.|. -++|+.|+|.. ++.|++.++..|..+.-..++-.
T Consensus 319 v~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yipa 357 (416)
T PF07350_consen 319 VSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYIPA 357 (416)
T ss_dssp EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE--B
T ss_pred ccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeEecC
Confidence 4454 45899999975 99999999999988776655533
No 85
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=2.2e+02 Score=24.56 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccC--CccccCCCCCCc
Q 028194 69 ILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEE--GGETMFPFENGI 146 (212)
Q Consensus 69 ~~~~l~~ri~~~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~--GGeT~Fp~~~~~ 146 (212)
+++-+.+|+-..--+|. .-+.+-|..|++|+.-.+|+|... ..+.+. .+.+|++... |=....-....
T Consensus 191 ~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~Pi~-slS~lSe~~m~Fg~~~~~~~~~~- 260 (323)
T KOG4176|consen 191 LFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDPIS-SLSFLSECTMEFGHGLLSDNIGN- 260 (323)
T ss_pred HHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCceE-EEEeecceeEEecccccccCccc-
Confidence 55666666655555665 455688999999999999996532 233344 4445776421 11111111000
Q ss_pred ccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEE
Q 028194 147 FLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 201 (212)
Q Consensus 147 ~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~ 201 (212)
+. ..+++.-+.|.+++-.+ ..-.-..|+++|+. ..+.+++
T Consensus 261 -------~~--g~~s~p~~~g~~lvi~~-----~~ad~~~~~~~~~~-~kRisit 300 (323)
T KOG4176|consen 261 -------FR--GSLSLPLRYGSVLVIRG-----RSADVAPHCIRPSR-NKRISIT 300 (323)
T ss_pred -------cc--cccccccccCeEEEeCC-----CcccccccccCCCC-CceEEEE
Confidence 00 12566667777777653 12236678888854 3444443
No 86
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=39.42 E-value=38 Score=24.48 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=18.9
Q ss_pred EEeeccCCEEEEeeeCCCCCcCCCCcccccCCcc
Q 028194 161 KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 194 (212)
Q Consensus 161 ~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~ 194 (212)
-++-..|..-.|.| .+.|.+.|+..
T Consensus 28 v~r~~~g~v~A~~n---------~CpH~g~~L~~ 52 (123)
T cd03536 28 VARDKDGEIHVSLN---------VCPHRGMRIST 52 (123)
T ss_pred EEECCCCCEEEEee---------eCCCCCCCccc
Confidence 34556788888887 78888888864
No 87
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=35.59 E-value=71 Score=23.48 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred CcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce
Q 028194 119 SQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE 196 (212)
Q Consensus 119 ~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~ 196 (212)
-.+.+..+.-++++.+|.-..|...+ ..+.|.-..|.+-.|.| .+.|.+.|+..|.
T Consensus 11 ~~~~W~~v~~~~el~~g~~~~~~~~g-------------~~i~l~r~~g~v~A~~n---------~CpHrg~~L~~g~ 66 (136)
T cd03548 11 FRNHWYPALFSHELEEGEPKGIQLCG-------------EPILLRRVDGKVYALKD---------RCLHRGVPLSKKP 66 (136)
T ss_pred cccCcEEEEEHHHCCCCCeEEEEECC-------------cEEEEEecCCEEEEEeC---------cCcCCCCccccCc
Confidence 34567777788888776544443221 23333337888888877 8999999988763
No 88
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=34.45 E-value=19 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.7
Q ss_pred ecCCCCHHHHHHHHH
Q 028194 13 FPNFASAEQCQSIIA 27 (212)
Q Consensus 13 i~~fLs~~ec~~li~ 27 (212)
-++|+|.+||+.|..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 368999999999874
No 89
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=33.75 E-value=1e+02 Score=23.90 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=33.6
Q ss_pred cccCCccccCCCCCCccc---CCCC-CcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce
Q 028194 131 DVEEGGETMFPFENGIFL---DSGY-DYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE 196 (212)
Q Consensus 131 d~~~GGeT~Fp~~~~~~~---~~~~-~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~ 196 (212)
.+..||||.|++.-.... +.+. ++.....+...| |++.=|-|..++.+ -++|....-+.|+
T Consensus 98 gil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~lSp--gdihsv~n~~sdrs---~aiHvy~a~ig~~ 162 (191)
T COG5553 98 GILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVHLSP--GDIHSVANTGSDRS---GAIHVYLADIGGT 162 (191)
T ss_pred eeeecccccceecccCCCCCCcchhhhhcCcceEeeCC--CCeeeecccCCCcc---ceEEEEecccCCC
Confidence 446799999987533321 1111 122223455555 99988887665532 3566655544343
No 90
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=33.65 E-value=61 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.1
Q ss_pred ccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 165 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 165 ~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
..|....|.| ...|.++|+..|
T Consensus 29 ~~g~~~A~~~---------~CpH~g~~L~~g 50 (95)
T cd03478 29 QGGEVHAIGA---------KCPHYGAPLAKG 50 (95)
T ss_pred ECCEEEEEcC---------cCcCCCCccCCC
Confidence 3666666654 889999998765
No 91
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=33.42 E-value=70 Score=22.09 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=16.2
Q ss_pred ccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 165 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 165 ~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
..|....|.+ ...|.+.|+..|
T Consensus 32 ~~g~~~A~~~---------~CpH~g~~L~~G 53 (101)
T TIGR02377 32 PDDQYYATDG---------LCTHEYAHLADG 53 (101)
T ss_pred CCCEEEEEcC---------cCCCCCCCCCCC
Confidence 3566666654 899999998766
No 92
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=33.16 E-value=65 Score=24.24 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=38.4
Q ss_pred ceEEEEEeeccccCCccc-cCCCCCCcccCCCCCcccccceEE-eeccCCEEEEeeeCCCCCcCCCCcccccCCccc---
Q 028194 121 RLASFLLYLSDVEEGGET-MFPFENGIFLDSGYDYKKCIGLKV-KPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG--- 195 (212)
Q Consensus 121 R~~T~liYLnd~~~GGeT-~Fp~~~~~~~~~~~~~~~~~~~~v-~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G--- 195 (212)
+.+..+.-+++..+.|.. .+.. .+ ..+.| +...|.+-.|.| .+.|+++|+..|
T Consensus 24 ~~W~~v~~~~el~~~g~~~~~~i-~g------------~~iiv~r~~~g~v~A~~n---------~CpHrg~~L~~g~~g 81 (150)
T cd03545 24 KTWSYVGLEAEIPNAGDFKSTFV-GD------------TPVVVTRAEDGSLHAWVN---------RCAHRGALVCRERRG 81 (150)
T ss_pred CceEEEEEHHHCCCCCCEEEEEE-CC------------ceEEEEECCCCCEEEEcc---------cCcCCCCEecccccC
Confidence 456677777887654432 2221 11 23444 567889999987 899999998743
Q ss_pred eEEEEEeccc
Q 028194 196 EKWVATKWIR 205 (212)
Q Consensus 196 ~K~~~~~W~~ 205 (212)
..-.++..+|
T Consensus 82 ~~~~i~CP~H 91 (150)
T cd03545 82 NDGSLTCVYH 91 (150)
T ss_pred CCCEEECCCC
Confidence 2334555444
No 93
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=32.94 E-value=37 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=25.1
Q ss_pred ccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 101 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 101 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
...+|+|..... ..-.+++|.-+.-..+||+|.|-+
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeee
Confidence 356899986532 122366777777778999999965
No 94
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=32.83 E-value=57 Score=25.89 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=31.4
Q ss_pred ccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCC-ccceEEEEEecccccc
Q 028194 155 KKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPV-IKGEKWVATKWIRDQE 208 (212)
Q Consensus 155 ~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV-~~G~K~~~~~W~~~~~ 208 (212)
..+..+.+.-.+|++|+.+. ..+|.+.-. ..+.-.++|.|++...
T Consensus 204 ~~~~~~~~~l~pGD~LfiP~---------gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 204 RKAPPYEVVLEPGDVLFIPP---------GWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp GG--EEEEEEETT-EEEE-T---------T-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ccCceeEEEECCCeEEEECC---------CCeEEEEEcCCCCeEEEEEEEecccc
Confidence 33467889999999999985 899999888 3344789999998643
No 95
>PLN00139 hypothetical protein; Provisional
Probab=31.48 E-value=55 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 100 QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 100 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
+...+|+|...... .-..++|.-+.-+.+||+|.|-+
T Consensus 111 ~~i~~H~E~sy~~~------pP~~~~f~C~~~p~~GGeT~~aD 147 (320)
T PLN00139 111 EFIYYHHEMVLIKE------SPKKVILFCEIPPPEGGQTPFVP 147 (320)
T ss_pred ccccccccccCccC------CCceEEEEecccCCCCCCCeeec
Confidence 34579999876432 23455666666677899998854
No 96
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=30.86 E-value=93 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=15.4
Q ss_pred CCCCcccccCCccce--EEEEEeccc
Q 028194 182 DRTSLHGSCPVIKGE--KWVATKWIR 205 (212)
Q Consensus 182 d~~~~H~~~pV~~G~--K~~~~~W~~ 205 (212)
+....|.++|+..|. .-.++...|
T Consensus 39 ~~~CpH~g~~l~~~~~~~~~i~Cp~H 64 (98)
T cd03467 39 SNRCTHQGCPLSEGEGEDGCIVCPCH 64 (98)
T ss_pred cCcCCCCCccCCcCccCCCEEEeCCC
Confidence 458899999998753 334444433
No 97
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=30.69 E-value=80 Score=23.46 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=34.6
Q ss_pred eEEEEEeeccccC-CccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 122 LASFLLYLSDVEE-GGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 122 ~~T~liYLnd~~~-GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
.+..+..+++..+ |..+.|...+. .-+.++-..|.+..|.| .+.|.++++..|
T Consensus 21 ~W~~v~~~~eL~~~g~~~~~~~~g~------------~i~v~r~~~G~v~A~~n---------~CpHrG~~L~~G 74 (144)
T cd03479 21 YWQPVALSSELTEDGQPVRVRLLGE------------DLVAFRDTSGRVGLLDE---------HCPHRGASLVFG 74 (144)
T ss_pred ceEEEEEHHHCCCCCCEEEEEECCc------------EEEEEEeCCCCEEEEcC---------cCCCCCCcccCC
Confidence 4566777888874 54444432110 12334557888888877 899999998876
No 98
>PHA02577 2 DNA end protector protein; Provisional
Probab=30.32 E-value=9.5 Score=29.49 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=36.1
Q ss_pred cceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 90 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 90 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
..|++|+.+|--|..-+|+-..+... . ==.+-+++|||.....|.|.|..
T Consensus 34 ~h~v~kp~~Grly~F~YdAk~KdtLp--y-wDrfPLI~flg~~~~~g~~l~~G 83 (181)
T PHA02577 34 GHQVVKPQPGRLYTFEYDAKHKDTLP--Y-WDRFPLIIFLGSGQSKAHTLMYG 83 (181)
T ss_pred ccccccCcCceEEEEEecccccCccc--c-cccCcEEEEEecCCCCCcceEee
Confidence 46899999999888888876543321 1 12456899999987778888865
No 99
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=30.27 E-value=78 Score=22.50 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=17.6
Q ss_pred EeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 162 VKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 162 v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
++-..|.+..|.| ...|.+.|+..|
T Consensus 29 ~r~~~g~~~a~~n---------~CpH~ga~L~~G 53 (115)
T cd03531 29 FADSDGALNVLDA---------YCRHMGGDLSQG 53 (115)
T ss_pred EECCCCCEEEEcC---------cCCCCCCCCccC
Confidence 3345677777755 788888888776
No 100
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.26 E-value=2e+02 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=18.2
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCceecEEe
Q 028194 9 RALYFPNFASAEQCQSIIATAKKRLKPSQLA 39 (212)
Q Consensus 9 ~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~ 39 (212)
.|.++.|+=+.+..+.|.+ .+|+...+.
T Consensus 4 iiaivqd~da~~l~~~L~d---~~fraTkLA 31 (109)
T COG3870 4 IIAIVQDQDANELEDALTD---KNFRATKLA 31 (109)
T ss_pred EEEEEecccHHHHHHHHHh---CCceeEEee
Confidence 3678888888777776643 456555544
No 101
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=29.96 E-value=96 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.5
Q ss_pred CCCCcccccCCccc
Q 028194 182 DRTSLHGSCPVIKG 195 (212)
Q Consensus 182 d~~~~H~~~pV~~G 195 (212)
+-...|.++|...|
T Consensus 43 ~n~CpH~~~~l~~g 56 (106)
T COG2146 43 DNRCPHAGAPLSRG 56 (106)
T ss_pred eCcCCCCCCccccc
Confidence 45899999995554
No 102
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=29.76 E-value=64 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=26.3
Q ss_pred cccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 100 QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 100 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
....+|+|..... ..--+.+|.-|....+||+|.|-+
T Consensus 94 ~~l~~HtD~~y~~------~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHE------YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCC------CCCceEEEEEeccCCCCCcceeee
Confidence 5566999987532 123456676777778899999976
No 103
>PRK02963 carbon starvation induced protein; Validated
Probab=29.48 E-value=61 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.092 Sum_probs=25.7
Q ss_pred ceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCc---cceEEE
Q 028194 159 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI---KGEKWV 199 (212)
Q Consensus 159 ~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~---~G~K~~ 199 (212)
.+.++-+.|++|+|.| ++.+|+-..-. .|.|+.
T Consensus 266 ~~~fkL~pGd~vvfDN--------~RVLHGR~aF~~~~g~~R~L 301 (316)
T PRK02963 266 ILSVPVPVGKFLLINN--------LFWLHGRDRFTPHPDLRREL 301 (316)
T ss_pred EEEEecCCceEEEEeC--------eEEeeCCCCcCCCCCCceEE
Confidence 3677888999999998 79999887764 245555
No 104
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=29.18 E-value=60 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=18.6
Q ss_pred EEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 161 KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 161 ~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
-++...|....|.| ...|.++++..|
T Consensus 25 v~r~~~g~~~A~~~---------~CpH~g~~l~~g 50 (91)
T cd03477 25 VYRDEDGVLHTVSA---------TCTHLGCIVHWN 50 (91)
T ss_pred EEECCCCCEEEEcC---------cCCCCCCCCccc
Confidence 34456777777765 888888888755
No 105
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=27.67 E-value=74 Score=21.28 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=18.8
Q ss_pred cccEEEecCCCCHHHHHHHHHH
Q 028194 7 RPRALYFPNFASAEQCQSIIAT 28 (212)
Q Consensus 7 ~P~i~~i~~fLs~~ec~~li~~ 28 (212)
...++.+.+||+.+|.+.+++.
T Consensus 65 ~~~vi~v~~~l~~~ei~~i~~~ 86 (87)
T cd05567 65 QAQHLSVDNFLNTPEYDELIER 86 (87)
T ss_pred CCeEEEEeccCChHHHHHHHHh
Confidence 3578999999999999988764
No 106
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=27.09 E-value=1.2e+02 Score=21.27 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=24.7
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCccc-ccCCccceEEEEEec
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHG-SCPVIKGEKWVATKW 203 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~-~~pV~~G~K~~~~~W 203 (212)
..++|.|+.| -=|+.++++|.+....-.. .-+-..--.|++-.|
T Consensus 61 ~~IkV~P~~G--~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~w 105 (105)
T PF11191_consen 61 YMIKVQPKAG--PPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFSW 105 (105)
T ss_pred eeEEEEeCCC--CCEEEECCCCCCcccccccccCCCCCCcEEEEeeC
Confidence 3589999999 4455666776433222111 112222357888777
No 107
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=26.58 E-value=91 Score=21.84 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.7
Q ss_pred EeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 162 VKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 162 v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
++-..|.+..|.| ...|.++|+..|
T Consensus 29 ~r~~~g~~~a~~n---------~CpH~g~~L~~g 53 (118)
T cd03469 29 VRDRDGEVRAFHN---------VCPHRGARLCEG 53 (118)
T ss_pred EECCCCCEEEEEE---------eCCCCCCEeeec
Confidence 3345778888876 888999988765
No 108
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=26.35 E-value=1.2e+02 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCcceEEecC-CCcccccccccCC
Q 028194 69 ILELIEHKIARATMLPQTHGEAFNVLRYE-IGQKYDSHYDAFN 110 (212)
Q Consensus 69 ~~~~l~~ri~~~~g~~~~~~E~~qv~rY~-~G~~y~~H~D~~~ 110 (212)
-+.++++ .+-.+|.....++-|. |. +||.|++|+|.-.
T Consensus 102 ~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YD 140 (383)
T COG2850 102 EVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYD 140 (383)
T ss_pred HHHHHHH---HhccCccccccceEEE-EecCCCccCccccchh
Confidence 3455544 3334666666666666 65 6999999999754
No 109
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=26.20 E-value=86 Score=26.04 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=29.5
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc-eEEEEEeccc
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG-EKWVATKWIR 205 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G-~K~~~~~W~~ 205 (212)
..++.+=++|++|+|-| .+++|.+.+-..+ .|..-+..+.
T Consensus 232 ~~~~~~w~~GD~viwDN--------r~~~H~a~~~~~~~~R~~~R~~v~ 272 (277)
T PRK09553 232 FQVRWRWQPNDVAIWDN--------RVTQHYANADYLPQRRIMHRATIL 272 (277)
T ss_pred eEEEEecCCCCEEEEcC--------cceeEecccCCCCCceEEEEEeec
Confidence 45788889999999998 6999999765533 4555555544
No 110
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=26.06 E-value=46 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=11.7
Q ss_pred ecCCCCHHHHHHH
Q 028194 13 FPNFASAEQCQSI 25 (212)
Q Consensus 13 i~~fLs~~ec~~l 25 (212)
-.+|||++|++.|
T Consensus 49 ~~dFLt~eE~~~i 61 (114)
T PF03754_consen 49 DNDFLTEEEKRII 61 (114)
T ss_pred ccccCCHHHHHHH
Confidence 3689999999999
No 111
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=23.37 E-value=1.3e+02 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=19.1
Q ss_pred eEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccc
Q 028194 160 LKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 195 (212)
Q Consensus 160 ~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G 195 (212)
+-++-..|.+-.|.| ...|.+.|+..|
T Consensus 30 ~l~r~~~g~~~a~~n---------~CpH~g~~L~~G 56 (116)
T cd03532 30 VLYRTQDGRVAALED---------RCPHRSAPLSKG 56 (116)
T ss_pred EEEECCCCCEEEeCC---------cCCCCCCCccCC
Confidence 334446777777765 888988888765
No 112
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.93 E-value=62 Score=19.33 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHH
Q 028194 15 NFASAEQCQSIIA 27 (212)
Q Consensus 15 ~fLs~~ec~~li~ 27 (212)
.|||++|..+|--
T Consensus 1 ~fLT~~El~elTG 13 (47)
T PF13986_consen 1 EFLTDEELQELTG 13 (47)
T ss_pred CCCCHHHHHHHHC
Confidence 3899999888753
No 113
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=22.61 E-value=1.2e+02 Score=16.36 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.3
Q ss_pred cceEEeec--cCCEEEEe
Q 028194 158 IGLKVKPR--RGDGLLFY 173 (212)
Q Consensus 158 ~~~~v~P~--~G~av~f~ 173 (212)
..+.++|. .|.||+|.
T Consensus 15 npltfkpvkttgtavvfs 32 (35)
T PF05906_consen 15 NPLTFKPVKTTGTAVVFS 32 (35)
T ss_pred CccceeeeeccceEEEee
Confidence 46778887 49999994
No 114
>PLN02281 chlorophyllide a oxygenase
Probab=21.75 E-value=1.3e+02 Score=27.93 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=37.7
Q ss_pred ceEEEEEeeccccCCccccCCCCCCcccCCCCCcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceE--E
Q 028194 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEK--W 198 (212)
Q Consensus 121 R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K--~ 198 (212)
+.+..+..+.|+.+|+-..+-..+. .-+-++-..|.+..|.| .+.|.++|+..|.- -
T Consensus 219 n~Wy~Va~s~EL~~g~~~~v~llG~------------~IVL~R~~dG~v~A~~D---------~CPHRgaPLs~G~v~g~ 277 (536)
T PLN02281 219 NFWYPVAFTADLKHDTMVPIECFEQ------------PWVIFRGEDGKPGCVRN---------TCAHRACPLDLGTVNEG 277 (536)
T ss_pred cccEEEEEHHHCCCCCeEEEEECCE------------EEEEEECCCCeEEEEeC---------cCcCCCCccccceeeCC
Confidence 3455666666665554333322110 12345556788888876 99999999998741 2
Q ss_pred EEEeccc
Q 028194 199 VATKWIR 205 (212)
Q Consensus 199 ~~~~W~~ 205 (212)
.+++.+|
T Consensus 278 ~L~CPYH 284 (536)
T PLN02281 278 RIQCPYH 284 (536)
T ss_pred EEEeCCC
Confidence 4555444
No 115
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=21.33 E-value=66 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=28.8
Q ss_pred cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEecc
Q 028194 158 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWI 204 (212)
Q Consensus 158 ~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~ 204 (212)
....|+-++|++|+|-| ++.+|+-..-+ |.|-.+-.++
T Consensus 318 n~~~ikL~PGsvifiDN--------wRvLHgRe~ft-GyRqmcGcYl 355 (371)
T KOG3889|consen 318 NSIEIKLRPGSVIFIDN--------WRVLHGRESFT-GYRQMCGCYL 355 (371)
T ss_pred ceEEEEecCceEEEEec--------eeEecCccccc-chhhhcceee
Confidence 56889999999999988 89999876644 6655444443
No 116
>PF08489 DUF1743: Domain of unknown function (DUF1743); InterPro: IPR013696 This domain of unknown function is found in many hypothetical proteins and predicted DNA-binding proteins such as transcription-associated proteins. It is found in bacteria and archaea. ; PDB: 3AU7_A 3AMU_A 3AMT_A 3U02_D.
Probab=21.03 E-value=51 Score=23.77 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.4
Q ss_pred CCCcccccCCccce
Q 028194 183 RTSLHGSCPVIKGE 196 (212)
Q Consensus 183 ~~~~H~~~pV~~G~ 196 (212)
-.+.|.++||+.|.
T Consensus 68 ~isp~t~~pVl~Gi 81 (118)
T PF08489_consen 68 TISPHTPDPVLYGI 81 (118)
T ss_dssp CCS--TTSSEEEEE
T ss_pred eecCCCCCceEEec
Confidence 34556666665553
No 117
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=20.54 E-value=87 Score=27.19 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=23.6
Q ss_pred cccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCC
Q 028194 102 YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 142 (212)
Q Consensus 102 y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 142 (212)
-.+|+|..... ..--+++|.-|....+||+|.|-+
T Consensus 179 l~~HtD~~y~~------~pp~~~~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 179 IDMHTDGTYWD------ETPGLQLFHCLTHDGTGGETVLVD 213 (362)
T ss_pred ccccccCCCCC------CCCcceeEeeeecCCCCCceeeee
Confidence 34888876532 223456666677778999999976
No 118
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=20.44 E-value=1.1e+02 Score=22.32 Aligned_cols=36 Identities=6% Similarity=-0.131 Sum_probs=24.8
Q ss_pred EEeeccCCEEEEeeeCCCCCcCCCCcccccCCccce---EEEEEeccc
Q 028194 161 KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE---KWVATKWIR 205 (212)
Q Consensus 161 ~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~---K~~~~~W~~ 205 (212)
-++...|.+-.|.| .+.|.+.|+..|. .-.++..+|
T Consensus 28 v~r~~dg~v~A~~n---------~C~Hrg~~L~~g~~~~~~~l~CPyH 66 (129)
T cd03539 28 MTRDPDGGINVVEN---------VCAHRGMRFCRERNGNAKDFVCPYH 66 (129)
T ss_pred EEECCCCCEEEEec---------cCcCCCCEeeeeccCccCEEECCCC
Confidence 34667888888987 8899998887642 124555544
Done!