BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028195
         (212 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The
           Escherichia Coli Sulfite Reductase
          Length = 167

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 98  GVHRFCFTNKSPYHETIDFDV-HVGHFSY--YDEHAKDEHFNPLLEQISKLEEALYNIQF 154
            +H+F F+ K+P  E   F V  +G  SY  + +  KD  F+  L ++   E  L  +  
Sbjct: 78  ALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKD--FDSKLAELGG-ERLLDRVDA 134

Query: 155 EQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
           +  +  A +E +A V +A+  RA   A  +S A
Sbjct: 135 DVEYQAAASEWRARVVDALKSRAPVAAPSQSVA 167


>pdb|3A0F|A Chain A, The Crystal Structure Of Geotrichum Sp. M128 Xyloglucanase
          Length = 763

 Score = 29.3 bits (64), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 25/84 (29%)

Query: 7   GFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADS----SWYS 62
           G+ +AAIL   FS + +YG                  G  + A+  V +ADS    SWY 
Sbjct: 394 GWWLAAILLDPFSDRLLYGT-----------------GAVIWATDAVSRADSNQAPSWYI 436

Query: 63  SHDGVD----LVVKGPASDQIHDF 82
           + +G++    LV+K P +   H F
Sbjct: 437 NTEGIEETAILVLKSPPAGPAHLF 460


>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
           A Resolution
          Length = 580

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 8/41 (19%)

Query: 44  GDTVHASFVVIKADSSWYSSH------DGV--DLVVKGPAS 76
           GDT+   F V +  ++WY SH      DG+   L++ GPA+
Sbjct: 150 GDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPAT 190


>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
          Length = 580

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 8/41 (19%)

Query: 44  GDTVHASFVVIKADSSWYSSH------DGV--DLVVKGPAS 76
           GDT+   F V +  ++WY SH      DG+   L++ GPA+
Sbjct: 150 GDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPAT 190


>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
          Length = 117

 Score = 26.9 bits (58), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 84  DKISEKFEFVAHHKGVHRFCFTNKSP 109
           D IS K  F A H GV  + F+ +SP
Sbjct: 69  DNISRKHTFKAEHAGVRTYFFSAESP 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,391,105
Number of Sequences: 62578
Number of extensions: 262918
Number of successful extensions: 618
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 7
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)