Query 028195
Match_columns 212
No_of_seqs 116 out of 1071
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 5.3E-49 1.2E-53 296.2 19.2 191 11-208 8-200 (201)
2 KOG1690 emp24/gp25L/p24 family 100.0 1.1E-42 2.5E-47 262.9 19.9 197 10-208 5-214 (215)
3 KOG1691 emp24/gp25L/p24 family 100.0 1E-40 2.3E-45 256.0 22.7 190 14-207 11-208 (210)
4 KOG1693 emp24/gp25L/p24 family 100.0 4E-41 8.8E-46 255.0 19.5 187 16-208 14-206 (209)
5 KOG3287 Membrane trafficking p 100.0 6.3E-34 1.4E-38 218.2 20.4 180 24-209 34-229 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 2.6E-37 5.6E-42 240.0 0.8 174 25-204 1-183 (183)
7 PF01835 A2M_N: MG2 domain; I 94.4 1.1 2.3E-05 30.8 10.2 67 43-109 13-88 (99)
8 PF11466 Doppel: Prion-like pr 93.2 0.051 1.1E-06 28.6 1.2 21 3-23 2-22 (30)
9 PF04151 PPC: Bacterial pre-pe 91.1 0.81 1.8E-05 29.4 5.3 61 34-104 3-68 (70)
10 smart00557 IG_FLMN Filamin-typ 90.5 1.7 3.7E-05 29.6 6.8 45 64-108 31-78 (93)
11 PF13897 GOLD_2: Golgi-dynamic 88.2 0.69 1.5E-05 33.9 3.5 29 91-119 104-134 (136)
12 PF09315 DUF1973: Domain of un 88.0 9.5 0.00021 29.6 9.9 55 66-120 42-100 (179)
13 PF00630 Filamin: Filamin/ABP2 87.6 2.6 5.6E-05 28.7 6.1 43 65-107 42-91 (101)
14 PF13860 FlgD_ig: FlgD Ig-like 84.6 5 0.00011 26.6 6.1 31 45-82 12-42 (81)
15 PF11589 DUF3244: Domain of un 84.1 5.5 0.00012 27.9 6.4 58 44-110 36-97 (106)
16 PF10779 XhlA: Haemolysin XhlA 82.0 11 0.00024 24.3 7.8 21 135-155 8-28 (71)
17 PF05738 Cna_B: Cna protein B- 78.9 5 0.00011 25.3 4.3 44 66-109 3-48 (70)
18 TIGR03503 conserved hypothetic 76.2 45 0.00098 29.0 10.4 55 64-118 241-300 (374)
19 PRK12813 flgD flagellar basal 75.1 11 0.00025 30.2 6.2 58 44-109 110-176 (223)
20 PRK06655 flgD flagellar basal 74.8 11 0.00023 30.4 6.0 56 45-107 113-179 (225)
21 PF04728 LPP: Lipoprotein leuc 73.1 19 0.00042 22.2 6.1 43 134-176 4-46 (56)
22 PRK15396 murein lipoprotein; P 72.7 20 0.00043 23.8 5.9 46 132-177 24-69 (78)
23 PRK12812 flgD flagellar basal 72.5 35 0.00075 28.1 8.5 57 45-108 128-195 (259)
24 PF13620 CarboxypepD_reg: Carb 72.5 8.2 0.00018 25.0 4.2 45 65-109 15-59 (82)
25 PF13473 Cupredoxin_1: Cupredo 71.9 16 0.00035 25.2 5.7 15 88-102 76-90 (104)
26 PRK05842 flgD flagellar basal 69.7 19 0.00041 30.3 6.5 60 45-107 149-221 (295)
27 PRK09973 putative outer membra 69.6 25 0.00053 23.8 5.8 47 132-178 23-69 (85)
28 PRK12633 flgD flagellar basal 66.6 51 0.0011 26.6 8.2 44 65-108 129-183 (230)
29 PF07495 Y_Y_Y: Y_Y_Y domain; 65.0 30 0.00065 21.3 6.6 44 64-109 7-50 (66)
30 PRK12634 flgD flagellar basal 63.6 42 0.00092 26.9 7.2 44 64-107 121-175 (221)
31 PF08372 PRT_C: Plant phosphor 63.3 64 0.0014 24.5 8.2 55 131-185 50-104 (156)
32 PF05753 TRAP_beta: Translocon 61.0 76 0.0016 24.6 8.4 30 38-73 32-61 (181)
33 PF03100 CcmE: CcmE; InterPro 60.8 7.6 0.00017 28.4 2.3 35 43-77 49-83 (131)
34 PRK09619 flgD flagellar basal 60.2 33 0.00072 27.4 6.1 57 45-108 110-173 (218)
35 PF10648 Gmad2: Immunoglobulin 59.8 21 0.00046 24.1 4.2 39 40-81 7-45 (88)
36 PF09753 Use1: Membrane fusion 58.8 83 0.0018 25.6 8.3 24 179-203 228-251 (251)
37 COG1723 Uncharacterized conser 58.6 19 0.00041 30.5 4.5 55 138-198 271-325 (331)
38 PF05377 FlaC_arch: Flagella a 58.4 41 0.0009 20.7 5.7 32 135-166 2-33 (55)
39 PRK14081 triple tyrosine motif 57.4 78 0.0017 29.8 8.6 45 75-119 425-476 (667)
40 PRK13159 cytochrome c-type bio 56.0 43 0.00094 25.3 5.7 15 64-78 71-85 (155)
41 PF07835 COX4_pro_2: Bacterial 54.1 36 0.00078 19.9 4.0 28 166-193 14-41 (44)
42 PF08114 PMP1_2: ATPase proteo 50.8 26 0.00057 20.1 2.9 29 183-211 14-42 (43)
43 PF00957 Synaptobrevin: Synapt 48.3 79 0.0017 21.0 9.0 24 154-177 38-61 (89)
44 PF15417 DUF4624: Domain of un 47.7 1E+02 0.0022 22.0 7.6 77 34-121 40-123 (132)
45 COG5415 Predicted integral mem 47.2 1.5E+02 0.0032 23.7 8.6 28 133-160 15-42 (251)
46 KOG0518 Actin-binding cytoskel 46.9 54 0.0012 32.3 6.0 47 63-109 881-930 (1113)
47 PF08234 Spindle_Spc25: Chromo 46.8 78 0.0017 20.5 5.7 28 95-122 4-33 (74)
48 KOG2861 Uncharacterized conser 46.6 61 0.0013 28.5 5.9 55 138-198 338-392 (399)
49 PF07210 DUF1416: Protein of u 46.1 91 0.002 21.0 6.4 59 44-109 7-65 (85)
50 PF00517 GP41: Retroviral enve 45.9 1E+02 0.0023 24.3 6.7 59 136-194 104-168 (204)
51 KOG2678 Predicted membrane pro 45.5 1.6E+02 0.0035 23.7 8.6 33 174-206 211-243 (244)
52 PF12669 P12: Virus attachment 45.5 27 0.00059 21.7 2.7 9 199-207 17-25 (58)
53 KOG3202 SNARE protein TLG1/Syn 45.4 1.6E+02 0.0034 24.0 7.7 22 132-153 151-172 (235)
54 PRK14081 triple tyrosine motif 42.7 1.2E+02 0.0027 28.6 7.5 69 35-108 198-266 (667)
55 PF01519 DUF16: Protein of unk 42.2 1.1E+02 0.0023 21.5 5.4 13 131-143 35-47 (102)
56 PF03554 Herpes_UL73: UL73 vir 41.9 51 0.0011 22.1 3.7 28 172-199 44-71 (82)
57 PHA02650 hypothetical protein; 41.5 45 0.00098 22.1 3.3 32 171-202 42-73 (81)
58 PF14054 DUF4249: Domain of un 41.1 1.9E+02 0.0041 23.7 8.0 45 12-57 3-53 (298)
59 PF14524 Wzt_C: Wzt C-terminal 40.7 70 0.0015 22.7 4.8 37 43-82 33-69 (142)
60 PF10528 PA14_2: GLEYA domain; 40.4 73 0.0016 22.6 4.6 44 33-82 59-102 (113)
61 COG4238 Murein lipoprotein [Ce 40.3 1.1E+02 0.0023 20.2 5.7 50 132-181 24-73 (78)
62 PF04678 DUF607: Protein of un 39.9 1.7E+02 0.0037 22.5 8.7 45 140-184 57-101 (180)
63 PRK13150 cytochrome c-type bio 39.7 1.2E+02 0.0027 23.0 5.9 37 43-79 56-92 (159)
64 PF04136 Sec34: Sec34-like fam 39.4 1.5E+02 0.0032 22.3 6.5 53 135-187 30-82 (157)
65 PF08842 Mfa2: Fimbrillin-A as 38.7 14 0.00029 30.0 0.7 69 39-108 3-78 (283)
66 KOG0860 Synaptobrevin/VAMP-lik 38.6 1.5E+02 0.0032 21.3 8.4 11 175-185 84-94 (116)
67 PRK14149 heat shock protein Gr 37.2 2E+02 0.0044 22.5 7.1 42 132-173 42-83 (191)
68 PF05739 SNARE: SNARE domain; 37.0 98 0.0021 18.8 5.4 44 133-176 4-47 (63)
69 PF11166 DUF2951: Protein of u 36.6 1.4E+02 0.0031 20.5 8.4 38 164-203 59-96 (98)
70 PF10651 DUF2479: Domain of un 36.6 1.9E+02 0.004 21.9 11.6 107 47-153 35-158 (170)
71 PF12690 BsuPI: Intracellular 36.4 43 0.00094 22.3 2.8 20 64-83 23-42 (82)
72 PHA03054 IMV membrane protein; 36.3 62 0.0013 21.0 3.2 28 173-200 43-70 (72)
73 PF05399 EVI2A: Ectropic viral 36.2 74 0.0016 25.4 4.3 38 174-211 126-173 (227)
74 PF07125 DUF1378: Protein of u 35.8 89 0.0019 19.2 3.7 30 176-207 7-36 (59)
75 PHA03163 hypothetical protein; 35.0 94 0.002 21.1 4.1 28 172-199 53-80 (92)
76 PHA02819 hypothetical protein; 34.8 76 0.0016 20.6 3.5 29 173-201 41-69 (71)
77 PF09323 DUF1980: Domain of un 34.7 65 0.0014 24.8 3.9 33 173-205 27-59 (182)
78 PRK13254 cytochrome c-type bio 34.6 1.7E+02 0.0037 21.9 6.0 14 64-77 70-83 (148)
79 COG5415 Predicted integral mem 34.2 2.2E+02 0.0048 22.7 6.7 44 133-183 8-51 (251)
80 COG2373 Large extracellular al 34.0 2.7E+02 0.0057 29.5 8.9 66 43-108 407-479 (1621)
81 PRK14155 heat shock protein Gr 33.6 1.9E+02 0.0042 23.0 6.4 37 135-171 22-58 (208)
82 PF10805 DUF2730: Protein of u 33.4 1E+02 0.0023 21.5 4.5 26 130-155 32-57 (106)
83 PHA02975 hypothetical protein; 32.3 1E+02 0.0022 19.8 3.8 28 174-201 40-67 (69)
84 PRK10378 inactive ferrous ion 32.3 3.2E+02 0.007 23.9 8.1 69 24-103 30-103 (375)
85 COG1382 GimC Prefoldin, chaper 32.3 1.9E+02 0.0041 20.9 5.6 43 132-174 69-111 (119)
86 PRK13165 cytochrome c-type bio 31.7 1.9E+02 0.0041 22.0 5.8 36 43-78 56-91 (160)
87 cd08355 Glo_EDI_BRP_like_14 Th 31.3 38 0.00082 23.4 2.0 13 67-79 105-117 (122)
88 KOG3091 Nuclear pore complex, 30.6 1.9E+02 0.004 26.2 6.4 51 134-184 349-399 (508)
89 cd05860 Ig4_SCFR Fourth immuno 30.5 74 0.0016 22.2 3.2 26 94-120 74-99 (101)
90 PRK14163 heat shock protein Gr 30.1 2.4E+02 0.0053 22.5 6.5 39 135-173 49-87 (214)
91 PF13715 DUF4480: Domain of un 29.3 1.6E+02 0.0035 19.0 6.3 49 65-118 16-64 (88)
92 TIGR02223 ftsN cell division p 28.9 59 0.0013 27.4 3.0 25 7-31 26-50 (298)
93 PHA02844 putative transmembran 28.9 1E+02 0.0022 20.2 3.4 26 176-201 46-71 (75)
94 PF14109 GldH_lipo: GldH lipop 28.3 1.4E+02 0.0031 21.6 4.6 45 65-109 68-117 (131)
95 PRK14154 heat shock protein Gr 28.3 2.8E+02 0.0061 22.1 6.5 41 135-175 61-101 (208)
96 PF00879 Defensin_propep: Defe 27.6 99 0.0022 18.8 3.0 18 9-26 5-22 (52)
97 PHA03156 hypothetical protein; 27.2 1.5E+02 0.0033 20.1 4.1 28 172-199 52-79 (90)
98 PF10754 DUF2569: Protein of u 27.1 2.1E+02 0.0045 21.2 5.4 33 179-211 54-86 (149)
99 PF09889 DUF2116: Uncharacteri 26.9 1.7E+02 0.0036 18.3 4.8 12 174-185 37-48 (59)
100 PRK06798 fliD flagellar cappin 26.9 3.6E+02 0.0078 24.0 7.7 18 136-153 382-399 (440)
101 PF01166 TSC22: TSC-22/dip/bun 26.9 1.7E+02 0.0036 18.3 4.5 32 130-161 11-42 (59)
102 cd05864 Ig2_VEGFR-2 Second imm 26.7 1.1E+02 0.0024 19.3 3.4 25 95-119 44-69 (70)
103 PF06196 DUF997: Protein of un 26.6 1.6E+02 0.0035 19.5 4.2 28 178-205 44-71 (80)
104 PRK14139 heat shock protein Gr 26.5 3.1E+02 0.0068 21.4 6.5 39 135-173 41-79 (185)
105 PF14584 DUF4446: Protein of u 26.4 1.6E+02 0.0034 22.2 4.6 43 133-175 39-81 (151)
106 PF08537 NBP1: Fungal Nap bind 26.1 1.9E+02 0.0041 24.7 5.4 41 134-174 183-223 (323)
107 PF09577 Spore_YpjB: Sporulati 26.1 3.6E+02 0.0077 21.9 9.1 24 177-200 198-221 (232)
108 PRK14143 heat shock protein Gr 25.9 3.3E+02 0.0071 22.2 6.7 34 136-169 77-110 (238)
109 PF07888 CALCOCO1: Calcium bin 25.2 5.5E+02 0.012 23.7 10.6 14 97-110 87-100 (546)
110 PF06156 DUF972: Protein of un 25.2 2.5E+02 0.0054 19.7 5.4 19 136-154 11-29 (107)
111 COG4467 Regulator of replicati 25.1 2.5E+02 0.0054 19.9 5.0 28 134-161 9-36 (114)
112 smart00338 BRLZ basic region l 24.9 1.8E+02 0.0039 18.0 4.1 29 132-160 25-53 (65)
113 PRK13415 flagella biosynthesis 24.5 1.4E+02 0.0031 23.9 4.3 37 171-207 57-93 (219)
114 PRK11546 zraP zinc resistance 24.1 61 0.0013 24.2 2.0 23 1-23 1-24 (143)
115 cd07628 BAR_Atg24p The Bin/Amp 23.9 2.9E+02 0.0064 21.2 5.9 53 134-186 5-57 (185)
116 PF13314 DUF4083: Domain of un 23.9 78 0.0017 19.7 2.1 22 129-150 35-56 (58)
117 KOG4657 Uncharacterized conser 23.9 2.9E+02 0.0062 22.4 5.7 49 92-140 162-212 (246)
118 COG1585 Membrane protein impli 23.9 1.4E+02 0.0029 22.2 3.8 26 183-208 49-74 (140)
119 PRK01614 tatE twin arginine tr 23.9 89 0.0019 21.0 2.5 18 1-18 1-19 (85)
120 PRK14164 heat shock protein Gr 23.7 3.9E+02 0.0084 21.5 7.2 47 132-178 76-122 (218)
121 PRK14161 heat shock protein Gr 23.7 3.5E+02 0.0075 20.9 6.6 39 134-172 27-65 (178)
122 PF06624 RAMP4: Ribosome assoc 23.6 39 0.00084 21.4 0.8 23 177-199 38-60 (63)
123 COG4856 Uncharacterized protei 23.3 5.2E+02 0.011 22.7 8.9 41 64-107 69-113 (403)
124 cd04976 Ig2_VEGFR Second immun 23.3 96 0.0021 19.4 2.6 24 95-118 45-69 (71)
125 PRK03625 tatE twin arginine tr 23.2 93 0.002 20.0 2.4 17 1-17 1-18 (67)
126 PRK14859 tatA twin arginine tr 23.2 97 0.0021 19.6 2.5 16 1-16 1-17 (63)
127 PF13260 DUF4051: Protein of u 23.1 1.4E+02 0.003 17.8 3.0 19 186-204 9-27 (54)
128 TIGR02542 B_forsyth_147 Bacter 23.1 49 0.0011 23.8 1.3 14 96-109 115-128 (145)
129 PF02974 Inh: Protease inhibit 23.1 2.1E+02 0.0045 19.6 4.4 33 69-101 64-96 (99)
130 KOG3491 Predicted membrane pro 22.6 1.1E+02 0.0023 19.1 2.5 20 179-198 40-59 (65)
131 PF13464 DUF4115: Domain of un 22.4 2.2E+02 0.0048 18.2 5.4 42 66-109 8-49 (77)
132 PRK14151 heat shock protein Gr 21.8 3.8E+02 0.0082 20.7 6.4 37 135-171 29-65 (176)
133 PF10670 DUF4198: Domain of un 21.8 3.6E+02 0.0078 20.6 6.2 19 86-104 191-209 (215)
134 TIGR01837 PHA_granule_1 poly(h 21.8 63 0.0014 23.1 1.7 25 129-153 92-116 (118)
135 PF07680 DoxA: TQO small subun 21.7 3.3E+02 0.0072 20.0 5.4 70 35-108 20-98 (133)
136 PRK03554 tatA twin arginine tr 21.5 1E+02 0.0023 20.9 2.5 17 1-17 1-18 (89)
137 PF00957 Synaptobrevin: Synapt 21.5 2.5E+02 0.0055 18.5 9.7 31 140-170 31-61 (89)
138 COG4062 MtrB Tetrahydromethano 21.3 83 0.0018 21.9 2.0 23 134-156 32-54 (108)
139 PRK14158 heat shock protein Gr 21.3 4.1E+02 0.0089 20.9 6.6 38 134-171 41-85 (194)
140 PRK14156 heat shock protein Gr 21.2 3.9E+02 0.0086 20.6 6.6 40 132-171 33-72 (177)
141 PHA02955 hypothetical protein; 21.2 1.1E+02 0.0024 24.4 3.0 27 179-206 180-206 (213)
142 PF13874 Nup54: Nucleoporin co 21.2 3.4E+02 0.0074 19.9 7.3 48 132-179 43-90 (141)
143 PF12681 Glyoxalase_2: Glyoxal 21.1 84 0.0018 20.8 2.2 13 67-79 93-105 (108)
144 PF14686 fn3_3: Polysaccharide 20.8 2.9E+02 0.0062 18.9 5.8 63 45-108 3-70 (95)
145 PRK10884 SH3 domain-containing 20.8 4.3E+02 0.0094 20.9 6.8 7 177-183 171-177 (206)
146 PRK10803 tol-pal system protei 20.7 2.2E+02 0.0049 23.3 4.9 35 134-168 62-96 (263)
147 KOG2662 Magnesium transporters 20.7 5.9E+02 0.013 22.5 7.5 7 133-139 297-303 (414)
148 PF14654 Epiglycanin_C: Mucin, 20.6 1.9E+02 0.0042 20.0 3.7 32 177-208 20-51 (106)
149 KOG0518 Actin-binding cytoskel 20.6 2.3E+02 0.005 28.2 5.4 56 47-108 378-437 (1113)
150 PF03908 Sec20: Sec20; InterP 20.4 2.8E+02 0.006 18.6 6.8 12 172-183 67-78 (92)
151 PF15432 Sec-ASP3: Accessory S 20.4 3.5E+02 0.0076 19.7 7.6 43 67-110 72-115 (128)
152 PRK10884 SH3 domain-containing 20.4 4.4E+02 0.0095 20.9 8.1 21 172-192 170-190 (206)
153 cd07624 BAR_SNX7_30 The Bin/Am 20.4 4E+02 0.0088 20.7 6.1 54 133-186 14-67 (200)
154 PRK00523 hypothetical protein; 20.3 2.6E+02 0.0057 18.2 4.5 27 179-205 6-32 (72)
155 KOG1924 RhoA GTPase effector D 20.2 2.5E+02 0.0055 27.2 5.5 50 140-189 365-414 (1102)
156 PF01483 P_proprotein: Proprot 20.1 2.6E+02 0.0057 18.2 4.5 55 46-106 3-70 (87)
157 PF11712 Vma12: Endoplasmic re 20.1 3.6E+02 0.0078 19.7 6.6 61 141-201 23-101 (142)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-49 Score=296.18 Aligned_cols=191 Identities=40% Similarity=0.617 Sum_probs=179.7
Q ss_pred HHHHHHHHhhhccceEEEEeCCcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceE
Q 028195 11 AAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKF 90 (212)
Q Consensus 11 ~~~~~~~~~~~~~~~l~f~i~~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~ 90 (212)
.+++++|++...+..+++++.+++||+|++. .|+.++++|+|.+|+ ..++++.|++|+|+.+++..+.+.|+|
T Consensus 8 ~vll~~L~~~~~~~~is~~ah~eeCf~e~~~-~gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk~ 80 (201)
T KOG1692|consen 8 IVLLGLLFISAAGYGISLDAHEEECFFENLE-EGDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGKY 80 (201)
T ss_pred HHHHHHHHHHhhheeEEEccchhhhHhhhhc-cCCEEEEEEEEecCC------ccceeEEEECCCCchhhhcccccCceE
Confidence 3445566666888888888899999999999 899999999999986 679999999999999999998999999
Q ss_pred EEEeccccceeeeeEecCC--CceEEEEEEEEcccCCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 91 EFVAHHKGVHRFCFTNKSP--YHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAI 168 (212)
Q Consensus 91 ~f~~~~~G~y~~Cf~n~~~--~~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~ 168 (212)
+|+++..|.|++||+|..+ .+|.|.|++++|+.++.++.++++|.++|++.+++|.+.|..++.||+|+..|++.||.
T Consensus 81 tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~ 160 (201)
T KOG1692|consen 81 TFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRN 160 (201)
T ss_pred EEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 59999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195 169 VNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 169 ~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
++|+|++|+.|||++|.++||+++++|||||||||+.|++
T Consensus 161 ~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv 200 (201)
T KOG1692|consen 161 TNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV 200 (201)
T ss_pred hhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence 9999999999999999999999999999999999999875
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-42 Score=262.87 Aligned_cols=197 Identities=19% Similarity=0.299 Sum_probs=172.0
Q ss_pred HHHHHHHHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCC---CCC-CCCCceEEEEEcCCCC--eEec
Q 028195 10 IAAILAFIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADS---SWY-SSHDGVDLVVKGPASD--QIHD 81 (212)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~---~~~-~~~~~i~~~i~dp~g~--~v~~ 81 (212)
+.++++|++++..+.|++|++. +++||.+++| +++.+.|+|.+.-.+. .|. .++.++.+.|.+|.++ +|..
T Consensus 5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelp-k~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~ 83 (215)
T KOG1690|consen 5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELP-KGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS 83 (215)
T ss_pred HHHHHHHHHHHhhccEEEEEecCCcccchhhhCC-CCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence 4556678888999999999995 5899999999 8999999999976553 232 2356788899999766 9999
Q ss_pred ccccccceEEEEeccccceeeeeEecCC-----CceEEEEEEEEcccCCCCccccccCcchHHHHHHHHHHHHHHHHHHH
Q 028195 82 FRDKISEKFEFVAHHKGVHRFCFTNKSP-----YHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQ 156 (212)
Q Consensus 82 ~~~~~~g~~~f~~~~~G~y~~Cf~n~~~-----~~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q 156 (212)
+.+.++|+|+|++..+|+|+||+....+ ...+|++++++|.+... ....++..+.++.++..|++++.+|+.||
T Consensus 84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l-~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ 162 (215)
T KOG1690|consen 84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANL-DAQIKETDKLLEGRVRQLNSRLESIRKEQ 162 (215)
T ss_pred ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776 26899999999987321 12336677888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195 157 HWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 157 ~y~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
.++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+||.++|.
T Consensus 163 ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKl 214 (215)
T KOG1690|consen 163 NLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKL 214 (215)
T ss_pred HHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999874
No 3
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-40 Score=256.03 Aligned_cols=190 Identities=24% Similarity=0.424 Sum_probs=174.7
Q ss_pred HHHHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEE
Q 028195 14 LAFIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFE 91 (212)
Q Consensus 14 ~~~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~ 91 (212)
++|++++..+.|+.|+++ .++|+.|++. .+..+.|.|.+.+...+ ....+++.|+||.|+.+++.++.++|+|+
T Consensus 11 ~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~-~n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~gqFa 86 (210)
T KOG1691|consen 11 LIFLLLLPLVHALRFDVPSKTTKCISEEIH-ENVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTKGQFA 86 (210)
T ss_pred HHHHHHhhhhheEEEEecCCCCEeehhhhc-cCeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehhhccccceEE
Confidence 345577889999999996 6899999999 89999999999886531 11569999999999999999999999999
Q ss_pred EEeccccceeeeeEec--CCC---ceEEEEEEEEccc-CCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 92 FVAHHKGVHRFCFTNK--SPY---HETIDFDVHVGHF-SYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTER 165 (212)
Q Consensus 92 f~~~~~G~y~~Cf~n~--~~~---~~~V~f~~~~g~~-~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~ 165 (212)
|++.++|.|..||.+. ... ...|+|+++.|.+ +||+++|++++++++|.++++|++.++.|+++.-|+|.||++
T Consensus 87 Fta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REee 166 (210)
T KOG1691|consen 87 FTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEE 166 (210)
T ss_pred EEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999993 332 4889999999987 799999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028195 166 QAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKL 207 (212)
Q Consensus 166 ~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~ 207 (212)
.|+++++||+|+.|+|++-++++++++.||++|||+||++||
T Consensus 167 mr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK 208 (210)
T KOG1691|consen 167 MRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK 208 (210)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-41 Score=254.96 Aligned_cols=187 Identities=23% Similarity=0.365 Sum_probs=166.1
Q ss_pred HHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEE
Q 028195 16 FIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFV 93 (212)
Q Consensus 16 ~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~ 93 (212)
|+.++..+..++|+++ .++|||+++++.++.++.+|+|..|| +.+|++.|++|+|++|+...++..+.|.|+
T Consensus 14 la~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ 87 (209)
T KOG1693|consen 14 LALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSFLFK 87 (209)
T ss_pred HHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC------ceeeEEEEECCCCCEEeeccccccccEEEE
Confidence 3343444789999996 68999999995445599999999997 669999999999999999999999999999
Q ss_pred eccccceeeeeEecCCC--ceEEEEEEEEcccCCCCcc--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 94 AHHKGVHRFCFTNKSPY--HETIDFDVHVGHFSYYDEH--AKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIV 169 (212)
Q Consensus 94 ~~~~G~y~~Cf~n~~~~--~~~V~f~~~~g~~~d~~~~--a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~ 169 (212)
+++.|+|++||+|..++ +|.|.+++++|.+.+..+. +....++.++..+..+.+.|+.|.+.|.|.|.||.+.+.+
T Consensus 88 ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t 167 (209)
T KOG1693|consen 88 AEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST 167 (209)
T ss_pred EecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999985 8999999999977443222 2344567899999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195 170 NEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 170 ~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
.+|+++|++|||++++++++++++.|+..||.||+.|+.
T Consensus 168 v~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~ 206 (209)
T KOG1693|consen 168 VESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRK 206 (209)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999998864
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-34 Score=218.19 Aligned_cols=180 Identities=20% Similarity=0.359 Sum_probs=156.0
Q ss_pred ceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEEecccccee
Q 028195 24 YGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHR 101 (212)
Q Consensus 24 ~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~ 101 (212)
..++++++ +++||+..++ .+..+..+|+|.+|. .+.+|++.+.+|.|.++.+...+.+|.+++...++|.|+
T Consensus 34 ~dftv~ipAGk~eCf~Q~v~-~~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~ 107 (236)
T KOG3287|consen 34 YDFTVMIPAGKTECFYQPVP-QGATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ 107 (236)
T ss_pred cceEEEecCCCceeeeeecc-CCeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence 45667774 6899999999 899999999999983 257899999999999999998899999999999999999
Q ss_pred eeeEecCCC--ceEEEEEEEEccc---C----CCCcccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 102 FCFTNKSPY--HETIDFDVHVGHF---S----YYDEHAK-----DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQA 167 (212)
Q Consensus 102 ~Cf~n~~~~--~~~V~f~~~~g~~---~----d~~~~a~-----~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~ 167 (212)
+||+|+.+. .|.|.|++-+... . .|.+-.+ .-.++.+++.+.++..+++.....|..+|.||.|+|
T Consensus 108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999995 7999999954322 1 1111111 235778889999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 028195 168 IVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGM 209 (212)
Q Consensus 168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~~ 209 (212)
.+.+|+..||.|||.+|+.+||+++..|+++|||+|+.|+.+
T Consensus 188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 999999999999999999999999999999999999988654
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=2.6e-37 Score=240.01 Aligned_cols=174 Identities=32% Similarity=0.569 Sum_probs=5.6
Q ss_pred eEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEE--cCCCCeEeccccc-ccceEEEEeccccc
Q 028195 25 GIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVK--GPASDQIHDFRDK-ISEKFEFVAHHKGV 99 (212)
Q Consensus 25 ~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~--dp~g~~v~~~~~~-~~g~~~f~~~~~G~ 99 (212)
|++|+++ +++||+++++ +++.+.++|++.+++ ...++++.|+ +|+|+.++.+.+. ++|+|+|+++++|+
T Consensus 1 a~~f~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVP-KGTTIRGSYRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcC-CCcEEEEEEEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence 5788884 6899999999 699999999999875 1458999999 5566999888555 45799999999999
Q ss_pred eeeeeEecCCC--c-eEEEEEEEEccc-CCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028195 100 HRFCFTNKSPY--H-ETIDFDVHVGHF-SYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSR 175 (212)
Q Consensus 100 y~~Cf~n~~~~--~-~~V~f~~~~g~~-~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~ 175 (212)
|++||+|+.+. + +.|+|++++|.+ .++++.++++++++++..|++|.+.++.++++|+|++.|+.+|+++++++++
T Consensus 75 y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~ 154 (183)
T PF01105_consen 75 YQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNS 154 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999985 4 999999999865 3566788899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028195 176 RAVYKAFWESTALVGASVLQVYLLRRLFE 204 (212)
Q Consensus 176 rv~~~si~~i~vli~~~~~Qv~~lkrfF~ 204 (212)
|++||+++++++++++++||+++||+||+
T Consensus 155 ~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 155 RIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp -----------------------HHHHHH
T ss_pred eEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999996
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.39 E-value=1.1 Score=30.77 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCcEEEEEEEEEECCC-CCCCCCCceEEEEEcCCCCeEecccc---cccceE--EEEecc---ccceeeeeEecCC
Q 028195 43 EGDTVHASFVVIKADS-SWYSSHDGVDLVVKGPASDQIHDFRD---KISEKF--EFVAHH---KGVHRFCFTNKSP 109 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~i~dp~g~~v~~~~~---~~~g~~--~f~~~~---~G~y~~Cf~n~~~ 109 (212)
+|+.|.+.--+.+.+. ...+.+..+.+.|.||+|+.+..... ...|.+ .|..+. .|.|++=+.....
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 5778777766555441 11123568999999999999987665 245644 444443 5999999888644
No 8
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=93.21 E-value=0.051 Score=28.65 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHHhhhcc
Q 028195 3 VGPVGFCIAAILAFIFSPQAV 23 (212)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (212)
+.++|.||+|++|.|++..++
T Consensus 2 rk~Lg~~~lAi~c~LL~s~Ls 22 (30)
T PF11466_consen 2 RKHLGGWWLAIVCVLLFSHLS 22 (30)
T ss_dssp -SS-SSHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHhh
Confidence 357999999999988776653
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=91.05 E-value=0.81 Score=29.36 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=41.3
Q ss_pred ceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccc-----cceEEEEeccccceeeee
Q 028195 34 ECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI-----SEKFEFVAHHKGVHRFCF 104 (212)
Q Consensus 34 ~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~-----~g~~~f~~~~~G~y~~Cf 104 (212)
..|..+++ +++.+.+. +... ..+.++.+.+++|..+......+ .....|+++.+|+|-+=+
T Consensus 3 D~y~f~v~-ag~~l~i~--l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVP-AGGTLTID--LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEES-TTEEEEEE--ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEc-CCCEEEEE--EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 46788899 78776655 3332 22678999999987766522222 235678899999998743
No 10
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=90.53 E-value=1.7 Score=29.61 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|+.+.-+ .+..+| ..+|++...|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4589999999998655432 233456 45888999999999888655
No 11
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=88.21 E-value=0.69 Score=33.93 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=23.8
Q ss_pred EEEeccccceeeeeEecCC--CceEEEEEEE
Q 028195 91 EFVAHHKGVHRFCFTNKSP--YHETIDFDVH 119 (212)
Q Consensus 91 ~f~~~~~G~y~~Cf~n~~~--~~~~V~f~~~ 119 (212)
++..+..|.|-++|+|+.+ ..|++.+.+.
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~ 134 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY 134 (136)
T ss_pred EEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence 5677899999999999998 3788877653
No 12
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=87.95 E-value=9.5 Score=29.55 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCeEec-ccccccceEEEEe---ccccceeeeeEecCCCceEEEEEEEE
Q 028195 66 GVDLVVKGPASDQIHD-FRDKISEKFEFVA---HHKGVHRFCFTNKSPYHETIDFDVHV 120 (212)
Q Consensus 66 ~i~~~i~dp~g~~v~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~~~~V~f~~~~ 120 (212)
...+.+.+|+|+.+.. ..+.......+.. .+.|.+++.+.|..+....+.+.+..
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtVtS 100 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTVTS 100 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEEEe
Confidence 4678899999998876 2222233334443 45899999998887655555555543
No 13
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=87.64 E-value=2.6 Score=28.74 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCC----eEe-cccccccce--EEEEeccccceeeeeEec
Q 028195 65 DGVDLVVKGPASD----QIH-DFRDKISEK--FEFVAHHKGVHRFCFTNK 107 (212)
Q Consensus 65 ~~i~~~i~dp~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~ 107 (212)
..+.+.|.+|++. .+. .-....+|. .+|++...|.|++++.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4678999999886 332 223345664 588899999999988754
No 14
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=84.60 E-value=5 Score=26.55 Aligned_cols=31 Identities=6% Similarity=0.178 Sum_probs=22.8
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF 82 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~ 82 (212)
..+.+.|.+... ...+.+.|+|.+|++|.+.
T Consensus 12 ~~~~~~~~l~~~-------a~~v~v~I~d~~G~~V~t~ 42 (81)
T PF13860_consen 12 TKGSIEYTLPED-------ADNVTVTIYDSNGQVVRTI 42 (81)
T ss_dssp CEEEEEEEECSS-------CEEEEEEEEETTS-EEEEE
T ss_pred EEEEEEEeCCCc-------ccEEEEEEEcCCCCEEEEE
Confidence 467777777654 3368999999999999864
No 15
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=84.09 E-value=5.5 Score=27.86 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=36.4
Q ss_pred CcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccc--cceEEEEe--ccccceeeeeEecCCC
Q 028195 44 GDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI--SEKFEFVA--HHKGVHRFCFTNKSPY 110 (212)
Q Consensus 44 ~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~~ 110 (212)
+..+.+.|... -.++.+.|.|.+|+++|+..-.. .....+.. ...|.|.+=+.+....
T Consensus 36 ~~~l~I~F~~~---------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~ 97 (106)
T PF11589_consen 36 GNNLSIEFESP---------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGT 97 (106)
T ss_dssp TTEEEEEESS-----------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-
T ss_pred CCEEEEEEcCC---------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCC
Confidence 45666666432 34799999999999999864333 22455554 5689999999988763
No 16
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.98 E-value=11 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFE 155 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~ 155 (212)
+..++..++.+.+.++.+...
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~ 28 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKR 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444433
No 17
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=78.88 E-value=5 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCeEec--ccccccceEEEEeccccceeeeeEecCC
Q 028195 66 GVDLVVKGPASDQIHD--FRDKISEKFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 66 ~i~~~i~dp~g~~v~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
++.|.|++.++..+.. ..-..+|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5789999998887775 4445689999999999999998888554
No 18
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=76.19 E-value=45 Score=29.01 Aligned_cols=55 Identities=7% Similarity=-0.177 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEe---ccccceeeeeEecCC--CceEEEEEE
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVA---HHKGVHRFCFTNKSP--YHETIDFDV 118 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~--~~~~V~f~~ 118 (212)
...+.+.+++|+|..........++...+.. .+-|.|++-..--.+ +.+.+.|.+
T Consensus 241 s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt~~GRe~~~~l 300 (374)
T TIGR03503 241 SLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTTITGRELQLTL 300 (374)
T ss_pred cEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEecCCCCEEEEEc
Confidence 3467778889999844444444444444433 356888876654433 244444443
No 19
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=75.09 E-value=11 Score=30.24 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=39.6
Q ss_pred CcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEEec---------cccceeeeeEecCC
Q 028195 44 GDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAH---------HKGVHRFCFTNKSP 109 (212)
Q Consensus 44 ~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~---------~~G~y~~Cf~n~~~ 109 (212)
+..+.+.|...+. ...+.+.|+|.+|++|+.... +.|.+.|... .+|.|++=+.-...
T Consensus 110 g~~~~~~~~l~~~-------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~ 176 (223)
T PRK12813 110 GTPVTISPNPAAD-------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG 176 (223)
T ss_pred CceeEEEEeccCC-------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence 3466777776544 347999999999999977543 4555455443 36899998876543
No 20
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=74.78 E-value=11 Score=30.45 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=38.4
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc--ccccceEEEEec---------cccceeeeeEec
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR--DKISEKFEFVAH---------HKGVHRFCFTNK 107 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~ 107 (212)
..+.+.|...+. ...+.+.|+|.+|++|+... ....|.+.|... .+|.|.+=+...
T Consensus 113 ~~~~~~~~l~~~-------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 113 GTTPFGVELPSA-------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CceEEEEEcCCC-------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 355666666543 33699999999999997532 244677777543 368999888754
No 21
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.10 E-value=19 Score=22.24 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRR 176 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~r 176 (212)
.++.|...++.|...++++..+..-++.--..-++-....|.|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888877776664333333333444444
No 22
>PRK15396 murein lipoprotein; Provisional
Probab=72.72 E-value=20 Score=23.80 Aligned_cols=46 Identities=7% Similarity=0.136 Sum_probs=31.4
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv 177 (212)
..++++|...++.|...++++..+..-++.--..-.+-.+..|.|+
T Consensus 24 ~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888887776654444444445555554
No 23
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=72.51 E-value=35 Score=28.13 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=39.5
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc--ccccceEEEEecc---------ccceeeeeEecC
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR--DKISEKFEFVAHH---------KGVHRFCFTNKS 108 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~ 108 (212)
..+.+.|.+... ...+.+.|+|.+|++|+.-. ....|.+.|.... +|.|++=+....
T Consensus 128 ~~~~~~~~l~~~-------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~ 195 (259)
T PRK12812 128 ELIALKLYFPED-------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN 195 (259)
T ss_pred ceeEEEEecCCc-------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence 356666666433 34699999999999997643 3346777776543 689999997443
No 24
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=72.50 E-value=8.2 Score=25.04 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCC
Q 028195 65 DGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
.+..+.+.+.++.......-..+|+|.|..-..|.|.+=+.....
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence 467888888877777666666799999996566999998876664
No 25
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=71.90 E-value=16 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=10.2
Q ss_pred ceEEEEeccccceee
Q 028195 88 EKFEFVAHHKGVHRF 102 (212)
Q Consensus 88 g~~~f~~~~~G~y~~ 102 (212)
..+.|++.+.|+|.+
T Consensus 76 ~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 76 ATVTFTPLKPGEYEF 90 (104)
T ss_dssp EEEEEEE-S-EEEEE
T ss_pred EEEEEcCCCCEEEEE
Confidence 357788899999986
No 26
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.75 E-value=19 Score=30.26 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=39.1
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc----ccceEEEEec---------cccceeeeeEec
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK----ISEKFEFVAH---------HKGVHRFCFTNK 107 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~----~~g~~~f~~~---------~~G~y~~Cf~n~ 107 (212)
..+.+.|....... ++...+.+.|+|.+|++|+.-... ..|.+.|... ..|.|+|=+...
T Consensus 149 ~~~~~~~~l~~~~~---~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 149 NKLSFSLFFDEKID---ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred CceEEEEecccccc---ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 35566666543211 123479999999999999864322 3477777753 268999998654
No 27
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=69.56 E-value=25 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.0
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAV 178 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~ 178 (212)
..+++++...++.|....+++..+..-.+.--..-.+-.+..|.|+=
T Consensus 23 ~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 23 EQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34778888899999999999988877777655555556666777654
No 28
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=66.58 E-value=51 Score=26.61 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCeEeccc--ccccceEEEEec---------cccceeeeeEecC
Q 028195 65 DGVDLVVKGPASDQIHDFR--DKISEKFEFVAH---------HKGVHRFCFTNKS 108 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~ 108 (212)
..+.+.|+|.+|++|+... ..+.|.+.|... .+|.|++=+.-..
T Consensus 129 ~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 129 TKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD 183 (230)
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence 4699999999999998643 345677777653 3589999997543
No 29
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=65.02 E-value=30 Score=21.29 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+....+.+.+.+++-+....... .+.|+....|.|++-+.....
T Consensus 7 ~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 7 NIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp TEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEET
T ss_pred ceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECC
Confidence 34555667777776555433222 889999999999999987664
No 30
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=63.64 E-value=42 Score=26.91 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCCeEeccc--ccccceEEEEecc---------ccceeeeeEec
Q 028195 64 HDGVDLVVKGPASDQIHDFR--DKISEKFEFVAHH---------KGVHRFCFTNK 107 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~ 107 (212)
...+.+.|+|.+|++|+... ..+.|.+.|.... +|.|.+-+.-.
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 34789999999999998743 3456777777633 59999999644
No 31
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=63.25 E-value=64 Score=24.45 Aligned_cols=55 Identities=15% Similarity=-0.045 Sum_probs=42.2
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028195 131 KDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWES 185 (212)
Q Consensus 131 ~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i 185 (212)
++...+.+..+.++|.+....+++-....-..-++.+.+..-...+..+..++-+
T Consensus 50 s~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~c 104 (156)
T PF08372_consen 50 SSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFC 104 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHH
Confidence 4455566888889999999999888888888888888888877777666544443
No 32
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.02 E-value=76 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=23.3
Q ss_pred eecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEc
Q 028195 38 HNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKG 73 (212)
Q Consensus 38 e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~d 73 (212)
..+. +|..+.+.|.+-..|. ..-.+++|.|
T Consensus 32 ~~~v-~g~~v~V~~~iyN~G~-----~~A~dV~l~D 61 (181)
T PF05753_consen 32 KYLV-EGEDVTVTYTIYNVGS-----SAAYDVKLTD 61 (181)
T ss_pred cccc-CCcEEEEEEEEEECCC-----CeEEEEEEEC
Confidence 3455 7899999999987663 4568888888
No 33
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=60.84 E-value=7.6 Score=28.37 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=20.4
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASD 77 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~ 77 (212)
.+..+.+.=.|..+.-.|.++...+.|.|.|.+..
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~~~~ 83 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGNTLTFTITDGGKE 83 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-SS-E
T ss_pred CCceEEEeeEEccCCEEEcCCCCEEEEEEEECCcE
Confidence 45666666666654433434567899999997543
No 34
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=60.18 E-value=33 Score=27.43 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=37.9
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc-ccccceEEEEec------cccceeeeeEecC
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR-DKISEKFEFVAH------HKGVHRFCFTNKS 108 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~-~~~~g~~~f~~~------~~G~y~~Cf~n~~ 108 (212)
....+.|...+. ...+.+.|+|.+|++..... ....|.+.|+.. .+|.|++=+....
T Consensus 110 ~~~~~~~~L~~~-------a~~v~v~I~D~~G~v~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGRLTLKHP-------APTLTLHITDILGQEKKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEEEecCCc-------CcEEEEEEEeCCCCEEEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 455666766433 34699999999999733222 234577777753 3689999997654
No 35
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=59.78 E-value=21 Score=24.13 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=26.2
Q ss_pred cCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEec
Q 028195 40 VQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHD 81 (212)
Q Consensus 40 ~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~ 81 (212)
.|..++.|...+.|...... -+..+.+.|.|.+|+++.+
T Consensus 7 ~P~pg~~V~sp~~V~G~A~~---FEgtv~~rv~D~~g~vl~e 45 (88)
T PF10648_consen 7 APAPGDTVSSPVKVSGKARV---FEGTVNIRVRDGHGEVLAE 45 (88)
T ss_pred CCCCcCCcCCCEEEEEEEEE---eeeEEEEEEEcCCCcEEEE
Confidence 34456666666666654322 1457999999999999854
No 36
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=58.76 E-value=83 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028195 179 YKAFWESTALVGASVLQVYLLRRLF 203 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lkrfF 203 (212)
||..+ ++++|++.++-++.+=|+|
T Consensus 228 ~~~~~-~i~~v~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 228 CWTWL-MIFVVIIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHH-HHHHHHHHHHHHHHHheeC
Confidence 55544 3344444555555554443
No 37
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=58.63 E-value=19 Score=30.48 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028195 138 LLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYL 198 (212)
Q Consensus 138 l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 198 (212)
+..+++-|+.+++-|.+..+.+. ..++.+...++-||-++-|++-|+.++++++.
T Consensus 271 I~~RvnvLN~Rl~vi~d~l~il~------e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 271 INPRVNVLNRRLEVISDLLDILN------EQLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 45566677777777776666554 34566788899999999999999999977653
No 38
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.37 E-value=41 Score=20.71 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQ 166 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~ 166 (212)
+++++..+.++...+..++.+.+-++..-+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887776666444333
No 39
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=57.44 E-value=78 Score=29.80 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=30.6
Q ss_pred CCCeEecccccccceEEEEeccccceeeeeEecCC-------CceEEEEEEE
Q 028195 75 ASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSP-------YHETIDFDVH 119 (212)
Q Consensus 75 ~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~-------~~~~V~f~~~ 119 (212)
+|..+....-..+..+.|++..+|.|++=+...+. ..+.|++.+.
T Consensus 425 ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 425 DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 45555544444566899999999999987776553 1466666654
No 40
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=55.98 E-value=43 Score=25.32 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=10.6
Q ss_pred CCceEEEEEcCCCCe
Q 028195 64 HDGVDLVVKGPASDQ 78 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~ 78 (212)
...+.|.|+|....+
T Consensus 71 ~~~v~F~vtD~~~~v 85 (155)
T PRK13159 71 SLKVSFTVIDKNAAT 85 (155)
T ss_pred CcEEEEEEEcCCcEE
Confidence 457889999875543
No 41
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=54.07 E-value=36 Score=19.88 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028195 166 QAIVNEAMSRRAVYKAFWESTALVGASV 193 (212)
Q Consensus 166 ~~~~~es~~~rv~~~si~~i~vli~~~~ 193 (212)
|.++.+.--.-..|.+++-+++++.+++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566777777777777665
No 42
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=50.78 E-value=26 Score=20.10 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 028195 183 WESTALVGASVLQVYLLRRLFERKLGMSR 211 (212)
Q Consensus 183 ~~i~vli~~~~~Qv~~lkrfF~~k~~~~~ 211 (212)
+.++-++++++.-.+.-|++-.+|++..|
T Consensus 14 F~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777888888899999999988766
No 43
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=48.34 E-value=79 Score=21.00 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 154 FEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 154 ~~q~y~~~re~~~~~~~es~~~rv 177 (212)
+.-+-+......++..+...+++.
T Consensus 38 ~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 38 DKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444444454444443
No 44
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=47.75 E-value=1e+02 Score=22.02 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=46.2
Q ss_pred ceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCC-CCeEecc--cccccc-eEEEEe---ccccceeeeeEe
Q 028195 34 ECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPA-SDQIHDF--RDKISE-KFEFVA---HHKGVHRFCFTN 106 (212)
Q Consensus 34 ~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~-g~~v~~~--~~~~~g-~~~f~~---~~~G~y~~Cf~n 106 (212)
-|..+++..-+ -.++|+. +|. ...+.|+|.+ .+++++. .++-.| .|+... +..-+|-+||..
T Consensus 40 FcVs~Die~L~--aEv~f~m-DGe--------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftG 108 (132)
T PF15417_consen 40 FCVSEDIEALD--AEVYFQM-DGE--------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTG 108 (132)
T ss_pred EEEecchheee--eEEEEEE-cCc--------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEec
Confidence 68888887322 2334444 343 3458888875 4566652 222233 454432 456789999998
Q ss_pred cCCCceEEEEEEEEc
Q 028195 107 KSPYHETIDFDVHVG 121 (212)
Q Consensus 107 ~~~~~~~V~f~~~~g 121 (212)
..-....|.+.|+.+
T Consensus 109 tkInhAvv~vtFeS~ 123 (132)
T PF15417_consen 109 TKINHAVVKVTFESE 123 (132)
T ss_pred cEeeeEEEEEEecch
Confidence 876667777777654
No 45
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=47.24 E-value=1.5e+02 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=15.3
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++.++..+.+++..++.++...+-.+
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~ 42 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQ 42 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554444333
No 46
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=46.86 E-value=54 Score=32.28 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 63 SHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 63 ~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...++.+.+.||.|...-.. ....+| +..|++.+.|.|.+|+.+..-
T Consensus 881 ~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~ 930 (1113)
T KOG0518|consen 881 SSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQ 930 (1113)
T ss_pred CccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCc
Confidence 35689999999998754432 112344 568999999999999999875
No 47
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=46.83 E-value=78 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=15.9
Q ss_pred ccccceeeeeEecCCC--ceEEEEEEEEcc
Q 028195 95 HHKGVHRFCFTNKSPY--HETIDFDVHVGH 122 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~~--~~~V~f~~~~g~ 122 (212)
...+..+|.|.|-+.. .+.++|.+.++.
T Consensus 4 ~~~d~lkf~F~~id~~d~~re~s~~l~i~~ 33 (74)
T PF08234_consen 4 IGGDQLKFVFTNIDPNDPDREFSFTLDISS 33 (74)
T ss_dssp -STT-EEEEE-S-BTTBSSS-EEEEEE-SS
T ss_pred cCCceEEEEEeEcCCCCCCceEEEEEEECC
Confidence 3455688888888763 577888887765
No 48
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.57 E-value=61 Score=28.47 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028195 138 LLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYL 198 (212)
Q Consensus 138 l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 198 (212)
+..++.-|+.+++-+.+..+.+++ .++++...++-||-|+-|++-++.+++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 334566777788888777777753 4556778889999999999999999998763
No 49
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=46.07 E-value=91 Score=21.00 Aligned_cols=59 Identities=8% Similarity=0.148 Sum_probs=37.8
Q ss_pred CcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCC
Q 028195 44 GDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 44 ~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...|+|... ..+.+ -..--+.+.|+.|+.-.+-.-..+|.|.|-+ .+|.+.+=...+..
T Consensus 7 e~VItG~V~--~~G~P----v~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 7 ETVITGRVT--RDGEP----VGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred eEEEEEEEe--cCCcC----CCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 456666644 33321 2345588899999876665556789998877 56777766555544
No 50
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=45.90 E-value=1e+02 Score=24.28 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEA------MSRRAVYKAFWESTALVGASVL 194 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es------~~~rv~~~si~~i~vli~~~~~ 194 (212)
.+-+.+++...+.+..+..+..-.+++..+.....++ -.....|+..+.++++++.++.
T Consensus 104 ~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 104 QQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544444444444444444 3444445566666666665554
No 51
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=45.48 E-value=1.6e+02 Score=23.73 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028195 174 SRRAVYKAFWESTALVGASVLQVYLLRRLFERK 206 (212)
Q Consensus 174 ~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k 206 (212)
.++..+|--+-++++++++++-.+.+=++|++-
T Consensus 211 ksk~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 211 KSKLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344477777888888999999999999999863
No 52
>PF12669 P12: Virus attachment protein p12 family
Probab=45.48 E-value=27 Score=21.66 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=6.6
Q ss_pred HHHHhhhcc
Q 028195 199 LRRLFERKL 207 (212)
Q Consensus 199 lkrfF~~k~ 207 (212)
+++++++++
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887755
No 53
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=1.6e+02 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=12.1
Q ss_pred ccCcchHHHHHHHHHHHHHHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQ 153 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~ 153 (212)
+++++.++.++.++...-..+.
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g 172 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMG 172 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666665555444443
No 54
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=42.67 E-value=1.2e+02 Score=28.56 Aligned_cols=69 Identities=7% Similarity=0.035 Sum_probs=43.3
Q ss_pred eeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecC
Q 028195 35 CFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 35 Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
|.-.+.- .++.|.+.-.+...+. ...-..|.+.+++|.....+.-.....|++++..+|.|++=....+
T Consensus 198 ~lns~~i-~~~eI~f~~~a~~~~g----~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD 266 (667)
T PRK14081 198 CLNKELI-CDEELVFEVESVYEED----RTILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKD 266 (667)
T ss_pred ccCccee-cCcEEEEEEEEEeCCC----ceEEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEec
Confidence 5444444 4555554433432221 1223445566788877776666677889999999999998666555
No 55
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=42.23 E-value=1.1e+02 Score=21.48 Aligned_cols=13 Identities=0% Similarity=0.332 Sum_probs=5.9
Q ss_pred cccCcchHHHHHH
Q 028195 131 KDEHFNPLLEQIS 143 (212)
Q Consensus 131 ~~e~~~~l~~~l~ 143 (212)
++..+..+|..+.
T Consensus 35 ~~q~L~kiE~~~~ 47 (102)
T PF01519_consen 35 NNQRLTKIENKLD 47 (102)
T ss_dssp HTTB-BHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3444555555554
No 56
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=41.95 E-value=51 Score=22.12 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 172 AMSRRAVYKAFWESTALVGASVLQVYLL 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+-..+|.+++.+++++.+.+=+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999988766664
No 57
>PHA02650 hypothetical protein; Provisional
Probab=41.48 E-value=45 Score=22.09 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=22.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 171 EAMSRRAVYKAFWESTALVGASVLQVYLLRRL 202 (212)
Q Consensus 171 es~~~rv~~~si~~i~vli~~~~~Qv~~lkrf 202 (212)
.+....-++|-++-+++++++.++-..|+|-.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777788888888888888854
No 58
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=41.12 E-value=1.9e+02 Score=23.65 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHhhhccceEEE-EeCC-----cceeeeecCCCCcEEEEEEEEEECC
Q 028195 12 AILAFIFSPQAVYGIRF-VIDR-----EECFSHNVQYEGDTVHASFVVIKAD 57 (212)
Q Consensus 12 ~~~~~~~~~~~~~~l~f-~i~~-----~~Cf~e~~~~~~~~i~~~y~v~~~~ 57 (212)
+++++++++.....+.+ .++. -+|+..... ....|.++.-..-.+
T Consensus 3 l~ll~l~l~sC~~~i~~~~~~~~~~lVV~~~i~~~~-~~~~V~Ls~s~~~~~ 53 (298)
T PF14054_consen 3 LLLLLLLLSSCEKEIDIDDLDEEPKLVVEGYITNPG-DPQTVRLSRSVPYFD 53 (298)
T ss_pred HHHHHHHHhccCcccccCcCCCCCeEEEEEEEecCC-CcEEEEEEEeecccC
Confidence 34556666777788887 5532 378877555 456777776664433
No 59
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=40.72 E-value=70 Score=22.68 Aligned_cols=37 Identities=3% Similarity=0.136 Sum_probs=21.0
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF 82 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~ 82 (212)
.++.+.+.+.+..... ..+..+.+.|++.+|..++..
T Consensus 33 ~ge~~~i~i~~~~~~~---i~~~~~~~~i~~~~g~~v~~~ 69 (142)
T PF14524_consen 33 SGEPIRIRIDYEVNED---IDDPVFGFAIRDSDGQRVFGT 69 (142)
T ss_dssp TTSEEEEEEEEEESS----EEEEEEEEEEEETT--EEEEE
T ss_pred CCCEEEEEEEEEECCC---CCccEEEEEEEcCCCCEEEEE
Confidence 3555555555544221 124568899999999888863
No 60
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=40.42 E-value=73 Score=22.62 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=23.5
Q ss_pred cceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc
Q 028195 33 EECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF 82 (212)
Q Consensus 33 ~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~ 82 (212)
..++...+. +|...-+..-...++ .....+++|++|+|..+.+.
T Consensus 59 ~~~~tv~L~-aG~yyPiRi~~~N~~-----g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 59 SKSVTVYLT-AGTYYPIRIVYANGG-----GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp EEEEEEEE--TT-BEEEEEEEEE-S-----S-EEEEEEEEETT-S--B--
T ss_pred ceEEEEEEE-CCcEEEEEEEEEcCC-----CceEEEEEEECCCCcEEecC
Confidence 467777777 676544444333333 24579999999999988765
No 61
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=40.26 E-value=1.1e+02 Score=20.15 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=34.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKA 181 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~s 181 (212)
..+++++...++.|...+.++..+.+-++.--.--.+.....+.|+--|.
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a 73 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 45567788888888888888887777666554445555556666665553
No 62
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=39.88 E-value=1.7e+02 Score=22.46 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 028195 140 EQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184 (212)
Q Consensus 140 ~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~ 184 (212)
.+.+.+...++.+.++..-+.....+-...++...++++|..+.-
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~ 101 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLAL 101 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777776666666667777777777654433
No 63
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=39.69 E-value=1.2e+02 Score=22.97 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=19.7
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeE
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQI 79 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v 79 (212)
.+..+.+.=.|..+.-.+..+...+.|.|+|....+-
T Consensus 56 ~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~ 92 (159)
T PRK13150 56 VGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVT 92 (159)
T ss_pred CCCEEEEeeEEeCCcEEECCCCcEEEEEEEcCCcEEE
Confidence 3555554444443322111224468999999876543
No 64
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=39.36 E-value=1.5e+02 Score=22.31 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~v 187 (212)
++.+...-..+.+....++...+-+-..+.+.....++...++.+|.-++.+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 34444445555555566666666677788888899999999999988777654
No 65
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=38.69 E-value=14 Score=30.03 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=30.8
Q ss_pred ecCCCCcEEEEEEEEEECCC-CCCCCCCceEEEEEcCCCCeEeccccc---cc-ceEEE--EeccccceeeeeEecC
Q 028195 39 NVQYEGDTVHASFVVIKADS-SWYSSHDGVDLVVKGPASDQIHDFRDK---IS-EKFEF--VAHHKGVHRFCFTNKS 108 (212)
Q Consensus 39 ~~~~~~~~i~~~y~v~~~~~-~~~~~~~~i~~~i~dp~g~~v~~~~~~---~~-g~~~f--~~~~~G~y~~Cf~n~~ 108 (212)
++| .+-.|.+.|.-..+.. .+...-..+++.|+|.+|+.+...... .. +.+.+ .....|.|+++.-...
T Consensus 3 dC~-~~~~l~f~y~~~~~~~~~~~~~v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n~ 78 (283)
T PF08842_consen 3 DCP-GGLTLKFSYDYNMGNADAFEDEVKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGNL 78 (283)
T ss_dssp ------EEEEEE---STT-S--HHHH--EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES-
T ss_pred CCC-ceEEEEEEEeCCccccccccceEeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEECC
Confidence 344 3555666655431111 000113589999999999966543211 12 34544 3345789999887643
No 66
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.58 E-value=1.5e+02 Score=21.30 Aligned_cols=11 Identities=9% Similarity=0.139 Sum_probs=5.5
Q ss_pred hhHHHHHHHHH
Q 028195 175 RRAVYKAFWES 185 (212)
Q Consensus 175 ~rv~~~si~~i 185 (212)
.|-+||-=+.+
T Consensus 84 krk~wWkn~Km 94 (116)
T KOG0860|consen 84 KRKMWWKNCKM 94 (116)
T ss_pred HHHHHHHHHHH
Confidence 34566643333
No 67
>PRK14149 heat shock protein GrpE; Provisional
Probab=37.19 E-value=2e+02 Score=22.52 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=28.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAM 173 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~ 173 (212)
++.++.++..+..+.+.+-.+..+..-+|.|..+-++.....
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~ 83 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY 83 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888777777766666666555544433
No 68
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.00 E-value=98 Score=18.81 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=26.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRR 176 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~r 176 (212)
+.++.|+..+..|.....+|..+..-+-..-++.-..++.+..+
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 34667777777777777777766555544444444444444443
No 69
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=36.64 E-value=1.4e+02 Score=20.54 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028195 164 ERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLF 203 (212)
Q Consensus 164 ~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF 203 (212)
.+....+..+-.-+..|-+.-++.+++.- =+..||.+|
T Consensus 59 ee~k~~n~Knir~~KmwilGlvgTi~gsl--iia~lr~~f 96 (98)
T PF11166_consen 59 EENKKKNDKNIRDIKMWILGLVGTIFGSL--IIALLRTIF 96 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 33444444444557777776666655443 344555554
No 70
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=36.56 E-value=1.9e+02 Score=21.89 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=48.3
Q ss_pred EEEEEEEEECCCCCCCCCCceEEEE--EcCCC-CeEecc---cccccceEEEEecc-----cccee--eeeEecCCC--c
Q 028195 47 VHASFVVIKADSSWYSSHDGVDLVV--KGPAS-DQIHDF---RDKISEKFEFVAHH-----KGVHR--FCFTNKSPY--H 111 (212)
Q Consensus 47 i~~~y~v~~~~~~~~~~~~~i~~~i--~dp~g-~~v~~~---~~~~~g~~~f~~~~-----~G~y~--~Cf~n~~~~--~ 111 (212)
-.+.+.+...+.+.+..+..+.+.+ ..++| ..+... .+..+|.+.|+.+. .|.+. +=+...... .
T Consensus 35 a~l~~~I~~ng~pldLs~~~v~~~l~l~~~dg~~~~~~~~~i~d~~~G~i~y~lp~~~l~~~G~v~a~~~i~~~~~~~~~ 114 (170)
T PF10651_consen 35 AKLRFNITKNGQPLDLSGANVTFKLVLKMSDGSIFIQDDVEIVDPTNGIIQYTLPDEFLKHVGKVKAQLFIYYNGDGQSI 114 (170)
T ss_dssp EEEEEEEEETTEE---TTSEEEEEEE-TTTTSSSSEEEE-SEEETTTTEEEEE--TTTTHSSEEEEEEEEEEEESSSEEE
T ss_pred EEEEEEEEECCEEEECCCCeEEEEEEEEcCCCcEEEEecceEEcCcCcEEEEEECHHHhccCcEEEEEEEEEECCCCCEE
Confidence 3555667666654443444455554 46777 333332 24568888887654 68874 445554221 2
Q ss_pred eEEEEEEEEcccCCCCcc--ccccCcchHHHHHHHHHHHHHHHH
Q 028195 112 ETIDFDVHVGHFSYYDEH--AKDEHFNPLLEQISKLEEALYNIQ 153 (212)
Q Consensus 112 ~~V~f~~~~g~~~d~~~~--a~~e~~~~l~~~l~~l~~~l~~i~ 153 (212)
..-.|.|.+....-.+.. .....+...+...+.+.+.+.++.
T Consensus 115 ~t~~F~F~V~~s~i~~~~~~~~~~Yi~~fd~l~~~i~~~~~~~~ 158 (170)
T PF10651_consen 115 STANFTFEVEDSLIDDIIAEEAEYYISDFDDLKKIIKEKVDEIK 158 (170)
T ss_dssp E---EEEEEE--TTTSSE--EETTEEHHHHHHHHHHHHHHHHHH
T ss_pred EEeeEEEEEecccccCccccchhcchhhHHHHHHHHHHHHHHHH
Confidence 233355555443211112 223334454444555555555553
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=36.41 E-value=43 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=12.9
Q ss_pred CCceEEEEEcCCCCeEeccc
Q 028195 64 HDGVDLVVKGPASDQIHDFR 83 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~ 83 (212)
....++.|.|++|+.++.+.
T Consensus 23 gq~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 23 GQRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp S--EEEEEE-TT--EEEETT
T ss_pred CCEEEEEEECCCCCEEEEec
Confidence 55799999999999999764
No 72
>PHA03054 IMV membrane protein; Provisional
Probab=36.26 E-value=62 Score=20.96 Aligned_cols=28 Identities=11% Similarity=-0.080 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 173 MSRRAVYKAFWESTALVGASVLQVYLLR 200 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lk 200 (212)
...+-++|-++-++.++++.++-..|+|
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666667777777888888887
No 73
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.23 E-value=74 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhcccccC
Q 028195 174 SRRAVYKAFWESTALVGASV----------LQVYLLRRLFERKLGMSR 211 (212)
Q Consensus 174 ~~rv~~~si~~i~vli~~~~----------~Qv~~lkrfF~~k~~~~~ 211 (212)
+...+.-.++-|+||+++|. =+|.+|||=-...|...|
T Consensus 126 ~K~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~gKRqpR 173 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVGKRQPR 173 (227)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 44455555555666555543 377888887765555554
No 74
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=35.83 E-value=89 Score=19.18 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028195 176 RAVYKAFWESTALVGASVLQVYLLRRLFERKL 207 (212)
Q Consensus 176 rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~ 207 (212)
-.+||+.+-.++.++.+.|- .+|.||++|-
T Consensus 7 ~lLyFctvVcaLYLvsGGyk--~IRnY~r~Ki 36 (59)
T PF07125_consen 7 ILLYFCTVVCALYLVSGGYK--VIRNYFRRKI 36 (59)
T ss_pred HHHHHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 35566666666666666654 4788888763
No 75
>PHA03163 hypothetical protein; Provisional
Probab=34.98 E-value=94 Score=21.10 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 172 AMSRRAVYKAFWESTALVGASVLQVYLL 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+--.+|++++..++++.++.=+.|+
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~ 80 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYM 80 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999888766654
No 76
>PHA02819 hypothetical protein; Provisional
Probab=34.82 E-value=76 Score=20.56 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 173 MSRRAVYKAFWESTALVGASVLQVYLLRR 201 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lkr 201 (212)
....-+++-++-++.++++.++-..|+|-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777778888888873
No 77
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=34.69 E-value=65 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028195 173 MSRRAVYKAFWESTALVGASVLQVYLLRRLFER 205 (212)
Q Consensus 173 ~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~ 205 (212)
.+-|..+++.+-++++++++++|++.+-+--.+
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 577889999999999999999999976665554
No 78
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=34.59 E-value=1.7e+02 Score=21.88 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=10.4
Q ss_pred CCceEEEEEcCCCC
Q 028195 64 HDGVDLVVKGPASD 77 (212)
Q Consensus 64 ~~~i~~~i~dp~g~ 77 (212)
...+.|.|+|.+..
T Consensus 70 ~~~~~F~ltD~~~~ 83 (148)
T PRK13254 70 GLTVRFVVTDGNAT 83 (148)
T ss_pred CCEEEEEEEeCCeE
Confidence 45789999997543
No 79
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=34.23 E-value=2.2e+02 Score=22.75 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=23.6
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFW 183 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~ 183 (212)
...-+....|.+|+.++.+.....+-+ +.+..+..+|++.+|+.
T Consensus 8 ~~~~~~~~~L~rle~qi~q~~~~~~~~-------qs~l~~~~~r~tv~slA 51 (251)
T COG5415 8 DFVTKYTADLSRLESQIHQLDVALKKS-------QSILSQWQSRLTVYSLA 51 (251)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHH
Confidence 334566777777777776665443333 23344444444444443
No 80
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=33.98 E-value=2.7e+02 Score=29.46 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=41.7
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc--ccccc--eEEEEeccc---cceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR--DKISE--KFEFVAHHK---GVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~--~~~~g--~~~f~~~~~---G~y~~Cf~n~~ 108 (212)
.|+.+++.-..-+.+..-...+..+.+.+.+|+|.++.... ...+| ++.|+.+++ |.|.+=+.-..
T Consensus 407 pGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 35555555444332211012466899999999998777632 22344 678887765 99999988755
No 81
>PRK14155 heat shock protein GrpE; Provisional
Probab=33.59 E-value=1.9e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNE 171 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~e 171 (212)
++.++.++..+.+.+..+..+.+-+|.|..+.++...
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 58 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDAR 58 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556656665556665555555555554443
No 82
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.44 E-value=1e+02 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=13.8
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHH
Q 028195 130 AKDEHFNPLLEQISKLEEALYNIQFE 155 (212)
Q Consensus 130 a~~e~~~~l~~~l~~l~~~l~~i~~~ 155 (212)
+++++++.+.+.+.+...++..+..+
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~ 57 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETK 57 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666744444444444444433
No 83
>PHA02975 hypothetical protein; Provisional
Probab=32.32 E-value=1e+02 Score=19.85 Aligned_cols=28 Identities=7% Similarity=-0.055 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 174 SRRAVYKAFWESTALVGASVLQVYLLRR 201 (212)
Q Consensus 174 ~~rv~~~si~~i~vli~~~~~Qv~~lkr 201 (212)
.++.++|-++-++.++++.++-..|+|-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666677777888888888874
No 84
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=32.32 E-value=3.2e+02 Score=23.89 Aligned_cols=69 Identities=10% Similarity=0.295 Sum_probs=36.8
Q ss_pred ceEEEEeCCcceeee--ecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc-eEEEEec-cccc
Q 028195 24 YGIRFVIDREECFSH--NVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE-KFEFVAH-HKGV 99 (212)
Q Consensus 24 ~~l~f~i~~~~Cf~e--~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g-~~~f~~~-~~G~ 99 (212)
..+.+.+.+..|--. .++ .|. ..|.|...+ .....+.+.++. .++-..++..-| .-.++.+ ..|+
T Consensus 30 ~~v~Vti~d~~c~p~~~tVp-AG~---~~f~V~N~~------~~~~Efe~~~~~-~vv~e~EnIaPG~s~~l~~~L~pGt 98 (375)
T PRK10378 30 PQVKVTVNDKQCEPMTLTVN-AGK---TQFIIQNHS------QKALEWEILKGV-MVVEERENIAPGFSQKMTANLQPGE 98 (375)
T ss_pred CceEEEEECCccccCceeeC-CCC---EEEEEEeCC------CCcceEEeeccc-cccccccccCCCCceEEEEecCCce
Confidence 356677777777744 555 453 455565544 234667666422 232322322223 2233343 6999
Q ss_pred eee-e
Q 028195 100 HRF-C 103 (212)
Q Consensus 100 y~~-C 103 (212)
|.+ |
T Consensus 99 Y~~~C 103 (375)
T PRK10378 99 YDMTC 103 (375)
T ss_pred EEeec
Confidence 998 8
No 85
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=1.9e+02 Score=20.86 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.8
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMS 174 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~ 174 (212)
++-.++++.+++.|+-+++.+.+.++..++|-...+..+.+..
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888999999998888888887777776665543
No 86
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.70 E-value=1.9e+02 Score=22.00 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=18.4
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCe
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQ 78 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~ 78 (212)
.+..+.+.=.|..+.-.+..+...+.|.|+|....+
T Consensus 56 ~g~~iRvgG~V~~GSi~r~~~~l~v~F~vtD~~~~v 91 (160)
T PRK13165 56 VGQRLRVGGMVMPGSVQRDPNSLKVSFTLYDAGGSV 91 (160)
T ss_pred CCCEEEEeeEEeCCcEEECCCCeEEEEEEEcCCeEE
Confidence 345555443344332111122446889999876543
No 87
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=31.34 E-value=38 Score=23.36 Aligned_cols=13 Identities=8% Similarity=0.320 Sum_probs=7.7
Q ss_pred eEEEEEcCCCCeE
Q 028195 67 VDLVVKGPASDQI 79 (212)
Q Consensus 67 i~~~i~dp~g~~v 79 (212)
..+.++||+|+.+
T Consensus 105 ~~~~~~DPdG~~~ 117 (122)
T cd08355 105 REFTARDPEGNLW 117 (122)
T ss_pred EEEEEECCCCCEE
Confidence 3455666666654
No 88
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=1.9e+02 Score=26.23 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~ 184 (212)
.++.-..+|+.+.+.+.+++.++--.-.+-++++....+...|++...+.+
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567777777777777666666777788888888888887755444
No 89
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=30.48 E-value=74 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.9
Q ss_pred eccccceeeeeEecCCCceEEEEEEEE
Q 028195 94 AHHKGVHRFCFTNKSPYHETIDFDVHV 120 (212)
Q Consensus 94 ~~~~G~y~~Cf~n~~~~~~~V~f~~~~ 120 (212)
..+.|.|.+=..|++. ...+.|++++
T Consensus 74 ~~E~G~YTf~a~N~~~-~~s~tF~l~v 99 (101)
T cd05860 74 GTEGGTYTFLVSNSDA-SASVTFNVYV 99 (101)
T ss_pred hhhCcEEEEEEECCCC-eEEEEEEEEE
Confidence 4578999999999987 5777777765
No 90
>PRK14163 heat shock protein GrpE; Provisional
Probab=30.08 E-value=2.4e+02 Score=22.54 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAM 173 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~ 173 (212)
++.++..+..+.+.+..++.+..-+|.|..+.++.....
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555556555555555555554443
No 91
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=29.33 E-value=1.6e+02 Score=19.01 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCCCceEEEEEE
Q 028195 65 DGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDV 118 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~V~f~~ 118 (212)
..+.+.+.+++...+- ..+|.|.+..+ .|.|.+-|.-.....+.+.++.
T Consensus 16 ~~a~V~~~~~~~~~~T----d~~G~F~i~~~-~g~~~l~is~~Gy~~~~~~i~~ 64 (88)
T PF13715_consen 16 PGATVYLKNTKKGTVT----DENGRFSIKLP-EGDYTLKISYIGYETKTITISV 64 (88)
T ss_pred cCeEEEEeCCcceEEE----CCCeEEEEEEc-CCCeEEEEEEeCEEEEEEEEEe
Confidence 3566666665522222 35899999954 7899999987776444444443
No 92
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=28.91 E-value=59 Score=27.37 Aligned_cols=25 Identities=8% Similarity=0.188 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhccceEEEEeC
Q 028195 7 GFCIAAILAFIFSPQAVYGIRFVID 31 (212)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~f~i~ 31 (212)
-.+++++++|++++...+||+|-..
T Consensus 26 ~~~~la~a~~vl~~g~~~gl~~~~~ 50 (298)
T TIGR02223 26 ATVLIAAILILLFIGGSSGLYLLTE 50 (298)
T ss_pred HHHHHHHHHHHHHhhccceeEEeec
Confidence 4567777777888888889998764
No 93
>PHA02844 putative transmembrane protein; Provisional
Probab=28.85 E-value=1e+02 Score=20.16 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 176 RAVYKAFWESTALVGASVLQVYLLRR 201 (212)
Q Consensus 176 rv~~~si~~i~vli~~~~~Qv~~lkr 201 (212)
.-+++-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 34444445566667777777777763
No 94
>PF14109 GldH_lipo: GldH lipoprotein
Probab=28.34 E-value=1.4e+02 Score=21.64 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCeEecccc-cccceE----EEEeccccceeeeeEecCC
Q 028195 65 DGVDLVVKGPASDQIHDFRD-KISEKF----EFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~~-~~~g~~----~f~~~~~G~y~~Cf~n~~~ 109 (212)
+.+.+.+.||+|+.+-+.-+ ..+.++ .+..+.+|.|.+.+.--..
T Consensus 68 dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~Mr 117 (131)
T PF14109_consen 68 DTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAMR 117 (131)
T ss_pred eeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEeccc
Confidence 45667777777776654322 122222 2344678889888875543
No 95
>PRK14154 heat shock protein GrpE; Provisional
Probab=28.33 E-value=2.8e+02 Score=22.06 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSR 175 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~ 175 (212)
++.++.++..+.+.+..+..+.+-+|.|..+.++.+.....
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~ 101 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666566666665555544433
No 96
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=27.55 E-value=99 Score=18.80 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhccceE
Q 028195 9 CIAAILAFIFSPQAVYGI 26 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l 26 (212)
.++++++|+.+-..+..+
T Consensus 5 ~LLaAlLLlAlqaQAepl 22 (52)
T PF00879_consen 5 ALLAALLLLALQAQAEPL 22 (52)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 345555555555555544
No 97
>PHA03156 hypothetical protein; Provisional
Probab=27.18 E-value=1.5e+02 Score=20.13 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 172 AMSRRAVYKAFWESTALVGASVLQVYLL 199 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~~~Qv~~l 199 (212)
+..+--.+|.+++.+++++.+.+=+.|.
T Consensus 52 sl~SFSSIWallN~~i~~~A~~ifL~y~ 79 (90)
T PHA03156 52 SIKTFSSIWAILNGIIFFCASLFFLRHL 79 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567899999999998887766553
No 98
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=27.07 E-value=2.1e+02 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 028195 179 YKAFWESTALVGASVLQVYLLRRLFERKLGMSR 211 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lkrfF~~k~~~~~ 211 (212)
..-.++++.-+++.++.++.+--||++|+..-|
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~ 86 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPK 86 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 344567777777888899999999999876543
No 99
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.92 E-value=1.7e+02 Score=18.30 Aligned_cols=12 Identities=0% Similarity=0.124 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHH
Q 028195 174 SRRAVYKAFWES 185 (212)
Q Consensus 174 ~~rv~~~si~~i 185 (212)
+.+.++|.++-+
T Consensus 37 ~~~~i~~~~~i~ 48 (59)
T PF09889_consen 37 KTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 100
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.91 E-value=3.6e+02 Score=24.04 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQ 153 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~ 153 (212)
+.++.+++++.+++..+.
T Consensus 382 ~~l~~~i~~l~~~~~~~e 399 (440)
T PRK06798 382 KSIDNRVSKLDLKITDID 399 (440)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334445555555554444
No 101
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.88 E-value=1.7e+02 Score=18.29 Aligned_cols=32 Identities=34% Similarity=0.365 Sum_probs=25.6
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 130 AKDEHFNPLLEQISKLEEALYNIQFEQHWLEA 161 (212)
Q Consensus 130 a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~ 161 (212)
|=.|.++-+.+++..|.++...+..+-.++|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33577888999999999999999888877763
No 102
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=26.75 E-value=1.1e+02 Score=19.26 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=18.5
Q ss_pred ccccceeeeeEecCCC-ceEEEEEEE
Q 028195 95 HHKGVHRFCFTNKSPY-HETIDFDVH 119 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~~-~~~V~f~~~ 119 (212)
...|.|..+..|.... .....|++.
T Consensus 44 ~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 44 KDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred HHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4569999999999874 566666553
No 103
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=26.58 E-value=1.6e+02 Score=19.55 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028195 178 VYKAFWESTALVGASVLQVYLLRRLFER 205 (212)
Q Consensus 178 ~~~si~~i~vli~~~~~Qv~~lkrfF~~ 205 (212)
.|+-.-.++..++..+.=.+.+|.+|+.
T Consensus 44 lWF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 44 LWFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555556667777777888889999973
No 104
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.53 E-value=3.1e+02 Score=21.35 Aligned_cols=39 Identities=5% Similarity=0.142 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAM 173 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~ 173 (212)
++.++.++..+.+.+-....+.+-+|.|..+.++.....
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444433
No 105
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.38 E-value=1.6e+02 Score=22.16 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=28.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSR 175 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~ 175 (212)
.+-+.+|+.+.+..+.++.+.++.+-.+.+-+..........+
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445677778888888888887777766666655555554443
No 106
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=26.15 E-value=1.9e+02 Score=24.68 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMS 174 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~ 174 (212)
.++++++.|..+...|..+++...|.+++-.-+..++.+.+
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35567777777777777777888888877777776666544
No 107
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=26.07 E-value=3.6e+02 Score=21.87 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 177 AVYKAFWESTALVGASVLQVYLLR 200 (212)
Q Consensus 177 v~~~si~~i~vli~~~~~Qv~~lk 200 (212)
-++|.++-++.+|++++.=+-+=|
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRK 221 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRK 221 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889989888888877666543
No 108
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.91 E-value=3.3e+02 Score=22.17 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQFEQHWLEAQTERQAIV 169 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~ 169 (212)
..++..+..+.+++..+..+..-+|.|..+.++.
T Consensus 77 ~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~ 110 (238)
T PRK14143 77 ESLKQELEELNSQYMRIAADFDNFRKRTSREQED 110 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444544455454444433
No 109
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.24 E-value=5.5e+02 Score=23.74 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=11.3
Q ss_pred ccceeeeeEecCCC
Q 028195 97 KGVHRFCFTNKSPY 110 (212)
Q Consensus 97 ~G~y~~Cf~n~~~~ 110 (212)
+..|.||-.+....
T Consensus 87 ~e~YqfcYv~~~g~ 100 (546)
T PF07888_consen 87 DEFYQFCYVDQKGE 100 (546)
T ss_pred CCeEEEEEECCCcc
Confidence 45699999988874
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.17 E-value=2.5e+02 Score=19.75 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQF 154 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~ 154 (212)
+.++..+..+.+.+..++.
T Consensus 11 ~~le~~l~~l~~~~~~LK~ 29 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKK 29 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 111
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.06 E-value=2.5e+02 Score=19.89 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=18.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEA 161 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~ 161 (212)
.++.++..+..+...+..++++...+-+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvE 36 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVE 36 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766655543
No 112
>smart00338 BRLZ basic region leucin zipper.
Probab=24.93 E-value=1.8e+02 Score=18.01 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=18.1
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
+.++..++..+..|...-..+......++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666666666665555544
No 113
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=24.46 E-value=1.4e+02 Score=23.88 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=27.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028195 171 EAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKL 207 (212)
Q Consensus 171 es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~ 207 (212)
.+...-+.+|.++++++.+++-+.=+|++-+|+.+|.
T Consensus 57 ~~~~~~~s~~~l~qmi~aL~~VI~Liy~l~rwL~rR~ 93 (219)
T PRK13415 57 EAAASSVSAFDFVKLIGATLFVIFLIYALVKWLNKRN 93 (219)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556678899999998777777777777766776664
No 114
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.07 E-value=61 Score=24.17 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=13.4
Q ss_pred CCc-chhHHHHHHHHHHHHhhhcc
Q 028195 1 MKV-GPVGFCIAAILAFIFSPQAV 23 (212)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~ 23 (212)
||+ .-++..++|+++++++..++
T Consensus 1 ~~~~~~~~~~~~ala~~~~~s~~a 24 (143)
T PRK11546 1 MKRNTKIALVLMALSALAMGSGSA 24 (143)
T ss_pred CCcchhHHHHHHHHHHHHHhhhHH
Confidence 666 66666666655555544443
No 115
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.94 E-value=2.9e+02 Score=21.24 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWEST 186 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~ 186 (212)
....+.+.+++|...|..+.+-...+..|....-.-.......+..|+.++-.
T Consensus 5 ~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~ 57 (185)
T cd07628 5 EFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESG 57 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 34567778888888888887776666667766666677777778888877755
No 116
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=23.94 E-value=78 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=16.1
Q ss_pred cccccCcchHHHHHHHHHHHHH
Q 028195 129 HAKDEHFNPLLEQISKLEEALY 150 (212)
Q Consensus 129 ~a~~e~~~~l~~~l~~l~~~l~ 150 (212)
.+++++.++++..++++.+.|+
T Consensus 35 ~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 35 NAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred cccccchhHHHHHHHHHHHHHc
Confidence 3567777788888888877654
No 117
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=2.9e+02 Score=22.39 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=31.8
Q ss_pred EEeccccceeeeeEecCCC--ceEEEEEEEEcccCCCCccccccCcchHHH
Q 028195 92 FVAHHKGVHRFCFTNKSPY--HETIDFDVHVGHFSYYDEHAKDEHFNPLLE 140 (212)
Q Consensus 92 f~~~~~G~y~~Cf~n~~~~--~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~ 140 (212)
..+-.+-..+|-|+|-+.. ...++|+++.+...||.-..-..++..++.
T Consensus 162 ie~~hgevikfiFTnIdpkdp~~~FsF~vhL~e~~Dy~Vvd~~P~L~gl~~ 212 (246)
T KOG4657|consen 162 IEAGHGEVIKFIFTNIDPKDPTREFSFTVHLGEDIDYQVVDHSPQLQGLTS 212 (246)
T ss_pred eeeccCceEEEEEeccCCCCCccceeeEEeeccccCccccCcCCCcccHHH
Confidence 3344445688999998874 578888998888766653333444444443
No 118
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=23.90 E-value=1.4e+02 Score=22.15 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195 183 WESTALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 183 ~~i~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
+|+++..+.++.-++..|||++++..
T Consensus 49 ~q~v~f~~lsv~~~~l~rr~~~~~~~ 74 (140)
T COG1585 49 LQLVLFAILSVLLALLGRRFVRRRLK 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78888999999999999999997543
No 119
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=23.88 E-value=89 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.2
Q ss_pred CCc-chhHHHHHHHHHHHH
Q 028195 1 MKV-GPVGFCIAAILAFIF 18 (212)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~ 18 (212)
|++ ++...++.++++|++
T Consensus 1 M~GlG~~ELLIIlvIvLLL 19 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLL 19 (85)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 666 555555554444433
No 120
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.73 E-value=3.9e+02 Score=21.46 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=31.9
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAV 178 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~ 178 (212)
...+..++.++..+.+.+..+..+..-+|.|..+.++........-+
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~ 122 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGV 122 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888887777777777666665554443333
No 121
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.72 E-value=3.5e+02 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=22.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEA 172 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es 172 (212)
.++.++..+..+.+.+-....+..-+|.|..+.++....
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~ 65 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD 65 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666565555544443
No 122
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=23.59 E-value=39 Score=21.44 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028195 177 AVYKAFWESTALVGASVLQVYLL 199 (212)
Q Consensus 177 v~~~si~~i~vli~~~~~Qv~~l 199 (212)
--||-.+-+.|+++.+++|++-+
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHH
Confidence 46777788899999999999865
No 123
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=5.2e+02 Score=22.73 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEe----ccccceeeeeEec
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVA----HHKGVHRFCFTNK 107 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~----~~~G~y~~Cf~n~ 107 (212)
...+.+.|.+|++..+......+ |...+ -..|.|+.=+.-.
T Consensus 69 ~etV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~ve 113 (403)
T COG4856 69 PETVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQVE 113 (403)
T ss_pred ceEEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEee
Confidence 45899999999998887665332 55544 2346666655543
No 124
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=23.26 E-value=96 Score=19.37 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=18.0
Q ss_pred ccccceeeeeEecCCC-ceEEEEEE
Q 028195 95 HHKGVHRFCFTNKSPY-HETIDFDV 118 (212)
Q Consensus 95 ~~~G~y~~Cf~n~~~~-~~~V~f~~ 118 (212)
...|.|..+..|.... ...+++++
T Consensus 45 ~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 45 EDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred HHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4579999999998864 56666655
No 125
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=23.20 E-value=93 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.0
Q ss_pred CCc-chhHHHHHHHHHHH
Q 028195 1 MKV-GPVGFCIAAILAFI 17 (212)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~ 17 (212)
|++ ++....+.++++|+
T Consensus 1 M~~ig~~elliIlvI~ll 18 (67)
T PRK03625 1 MGEISITKLLVVAALVVL 18 (67)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 555 45444444444433
No 126
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=23.20 E-value=97 Score=19.63 Aligned_cols=16 Identities=13% Similarity=0.195 Sum_probs=7.3
Q ss_pred CCc-chhHHHHHHHHHH
Q 028195 1 MKV-GPVGFCIAAILAF 16 (212)
Q Consensus 1 ~~~-~~~~~~~~~~~~~ 16 (212)
|++ ++--..+.++++|
T Consensus 1 MfgiG~~ElliIlvv~L 17 (63)
T PRK14859 1 MFGIGMPELIVILVIVL 17 (63)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 555 4444444443333
No 127
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.10 E-value=1.4e+02 Score=17.78 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028195 186 TALVGASVLQVYLLRRLFE 204 (212)
Q Consensus 186 ~vli~~~~~Qv~~lkrfF~ 204 (212)
++++++...-..++||+-+
T Consensus 9 vli~lv~~gy~~hmkrycr 27 (54)
T PF13260_consen 9 VLIVLVVVGYFCHMKRYCR 27 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555677887743
No 128
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.09 E-value=49 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.0
Q ss_pred cccceeeeeEecCC
Q 028195 96 HKGVHRFCFTNKSP 109 (212)
Q Consensus 96 ~~G~y~~Cf~n~~~ 109 (212)
..|.|++||.-...
T Consensus 115 P~GsYRiCFrL~~~ 128 (145)
T TIGR02542 115 PEGSYRICFRLFNA 128 (145)
T ss_pred CCCceEEEEEEecc
Confidence 46999999986554
No 129
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=23.08 E-value=2.1e+02 Score=19.62 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=20.1
Q ss_pred EEEEcCCCCeEecccccccceEEEEecccccee
Q 028195 69 LVVKGPASDQIHDFRDKISEKFEFVAHHKGVHR 101 (212)
Q Consensus 69 ~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~ 101 (212)
+.++|.+|+.+..-....+|.|.=..+.++.|.
T Consensus 64 l~L~d~~G~~v~~f~~~~~g~~~g~~~~g~~~~ 96 (99)
T PF02974_consen 64 LVLTDADGSVVAFFYRSGDGRFEGQTPDGQPLS 96 (99)
T ss_dssp EEEE-TTS-EEEEEEEECTTEEEEEECCCEEEE
T ss_pred EEEECCCCCEEEEEEccCCeeEEeEcCCCCEEE
Confidence 777888888777655555667766655555443
No 130
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=22.63 E-value=1.1e+02 Score=19.12 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028195 179 YKAFWESTALVGASVLQVYL 198 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~ 198 (212)
|.--+-+.|+++.+++|++-
T Consensus 40 wLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 40 WLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred HHHHHHHHHhhcHHHHHHHH
Confidence 44556778888999999863
No 131
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.44 E-value=2.2e+02 Score=18.21 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCC
Q 028195 66 GVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 66 ~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+.=+.|+|.+|+.+++..-++...+++ +....+++=+-|...
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~~ 49 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAGA 49 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCCc
Confidence 466888999999999876544445666 444556665555553
No 132
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.83 E-value=3.8e+02 Score=20.65 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNE 171 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~e 171 (212)
++.++.++..+.+.+-....+..-+|.|..+.++...
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556655555555555555555555544433
No 133
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=21.81 E-value=3.6e+02 Score=20.63 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.1
Q ss_pred ccceEEEEeccccceeeee
Q 028195 86 ISEKFEFVAHHKGVHRFCF 104 (212)
Q Consensus 86 ~~g~~~f~~~~~G~y~~Cf 104 (212)
.+|++.|+.+..|.|-+=.
T Consensus 191 ~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 191 ANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred CCCEEEEecCCCEEEEEEE
Confidence 4788888888888876533
No 134
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.78 E-value=63 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=14.7
Q ss_pred cccccCcchHHHHHHHHHHHHHHHH
Q 028195 129 HAKDEHFNPLLEQISKLEEALYNIQ 153 (212)
Q Consensus 129 ~a~~e~~~~l~~~l~~l~~~l~~i~ 153 (212)
++++++++.|+.+|..|...+..+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666666665543
No 135
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=21.68 E-value=3.3e+02 Score=20.00 Aligned_cols=70 Identities=9% Similarity=0.124 Sum_probs=40.0
Q ss_pred eeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccc---------cceEEEEeccccceeeeeE
Q 028195 35 CFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI---------SEKFEFVAHHKGVHRFCFT 105 (212)
Q Consensus 35 Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~---------~g~~~f~~~~~G~y~~Cf~ 105 (212)
+.....- .+..+.++--..+|...|. ..-+.+.+.|++|++++++.... ..+|. ..-..|.|.++.-
T Consensus 20 eis~~~~-~~~~L~f~vyr~~G~D~Yg--sfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv-~~~~~g~~gl~vp 95 (133)
T PF07680_consen 20 EISDALI-ENGTLSFHVYRVEGPDVYG--SFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYV-AKVKPGKHGLVVP 95 (133)
T ss_pred EEeeeEE-eCCeEEEEEEEcCCCccCC--ceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEE-ccccCCceeEEEE
Confidence 3555444 4555665544444443332 34577899999999998764321 22332 2234677777776
Q ss_pred ecC
Q 028195 106 NKS 108 (212)
Q Consensus 106 n~~ 108 (212)
-..
T Consensus 96 LGa 98 (133)
T PF07680_consen 96 LGA 98 (133)
T ss_pred cCC
Confidence 544
No 136
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=21.53 E-value=1e+02 Score=20.93 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=8.2
Q ss_pred CCc-chhHHHHHHHHHHH
Q 028195 1 MKV-GPVGFCIAAILAFI 17 (212)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~ 17 (212)
|.+ ++....+.++++|+
T Consensus 1 M~glG~~eLlIIlvIvLL 18 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVL 18 (89)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 555 55555554444433
No 137
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.50 E-value=2.5e+02 Score=18.48 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 140 EQISKLEEALYNIQFEQHWLEAQTERQAIVN 170 (212)
Q Consensus 140 ~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~ 170 (212)
+.|+.|.++.+++..+-.-.+....+.+...
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3566666677777666555544444444433
No 138
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=21.35 E-value=83 Score=21.88 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQ 156 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q 156 (212)
+++++++++++|+..++++.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999998887654
No 139
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.33 E-value=4.1e+02 Score=20.87 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=17.0
Q ss_pred CcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNI-------QFEQHWLEAQTERQAIVNE 171 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i-------~~~q~y~~~re~~~~~~~e 171 (212)
.++.++..+..+...+.++ ..+..-+|.|..+.++...
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 4444444444444444443
No 140
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.20 E-value=3.9e+02 Score=20.62 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=25.5
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNE 171 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~e 171 (212)
...++.++..+..+.+.+..+..+..-+|.|..+.+....
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~ 72 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQ 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777776666666665555544
No 141
>PHA02955 hypothetical protein; Provisional
Probab=21.16 E-value=1.1e+02 Score=24.39 Aligned_cols=27 Identities=7% Similarity=-0.145 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028195 179 YKAFWESTALVGASVLQVYLLRRLFERK 206 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lkrfF~~k 206 (212)
-|.++-++++++..++ ++|+||-..-|
T Consensus 180 ~w~ii~~v~ii~~~v~-l~yikR~i~~k 206 (213)
T PHA02955 180 KWFIIYIVLCLLILII-LGYIYRTVRIK 206 (213)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHheee
Confidence 4556666666666666 99999976654
No 142
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.16 E-value=3.4e+02 Score=19.86 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=35.7
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVY 179 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~ 179 (212)
.+++......++.+.+.+..+..+..-...|-.+.+........|++-
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999877777777777787777777777654
No 143
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.15 E-value=84 Score=20.80 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=6.3
Q ss_pred eEEEEEcCCCCeE
Q 028195 67 VDLVVKGPASDQI 79 (212)
Q Consensus 67 i~~~i~dp~g~~v 79 (212)
-.+.+.||+|+.+
T Consensus 93 ~~~~~~DPdG~~i 105 (108)
T PF12681_consen 93 RSFYFIDPDGNRI 105 (108)
T ss_dssp EEEEEE-TTS-EE
T ss_pred EEEEEECCCCCEE
Confidence 4456666666554
No 144
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=20.84 E-value=2.9e+02 Score=18.85 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=27.8
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcC-----CCCeEecccccccceEEEEeccccceeeeeEecC
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGP-----ASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp-----~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
..|.|...+.++... .+....+-+-+..| +....|..+-..+|.|++.--.+|+|++-.....
T Consensus 3 G~VsG~l~l~dg~~~-~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTN-PPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp BEEEEEEE---SS---TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred CEEEEEEEEccCccc-CccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 356777666655210 00122344445544 2233344444479999999999999999988843
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.76 E-value=4.3e+02 Score=20.90 Aligned_cols=7 Identities=0% Similarity=-0.045 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 028195 177 AVYKAFW 183 (212)
Q Consensus 177 v~~~si~ 183 (212)
.-||...
T Consensus 171 ~~wf~~G 177 (206)
T PRK10884 171 MQWFMYG 177 (206)
T ss_pred HHHHHHc
Confidence 3444333
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.75 E-value=2.2e+02 Score=23.32 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=20.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAI 168 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~ 168 (212)
+++.++.++.+|...++....+.+-++.|+.....
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665555555555443
No 147
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=20.72 E-value=5.9e+02 Score=22.54 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=3.1
Q ss_pred cCcchHH
Q 028195 133 EHFNPLL 139 (212)
Q Consensus 133 e~~~~l~ 139 (212)
++++++|
T Consensus 297 dd~eElE 303 (414)
T KOG2662|consen 297 DDVEELE 303 (414)
T ss_pred ccHHHHH
Confidence 4444433
No 148
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.61 E-value=1.9e+02 Score=20.02 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195 177 AVYKAFWESTALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 177 v~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
|..-+++-+++.+++.+.=.+++|++|.-+..
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR~~lslrn~ 51 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVRNSLSLRNT 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34445566666677777778889998876654
No 149
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=20.59 E-value=2.3e+02 Score=28.23 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=35.8
Q ss_pred EEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEec--ccccc--cceEEEEeccccceeeeeEecC
Q 028195 47 VHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHD--FRDKI--SEKFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 47 i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~--~~~~~--~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
+.+.|.+.+.+ +..+.+.|.||+|+.... .++.. ...++|.+...|.|.+=+.-..
T Consensus 378 ~d~~fD~~Dag------eg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~g 437 (1113)
T KOG0518|consen 378 VDFTFDEGDAG------EGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYGG 437 (1113)
T ss_pred ceeeEEccccc------cceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEECC
Confidence 44445555443 335899999999975432 22222 3367888899999988776544
No 150
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.45 E-value=2.8e+02 Score=18.57 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 028195 172 AMSRRAVYKAFW 183 (212)
Q Consensus 172 s~~~rv~~~si~ 183 (212)
.+...++|++++
T Consensus 67 ~~D~~li~~~~~ 78 (92)
T PF03908_consen 67 KTDRILIFFAFL 78 (92)
T ss_pred HHhHHHHHHHHH
Confidence 344455555533
No 151
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=20.39 E-value=3.5e+02 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCeEecccccccceEEEEeccc-cceeeeeEecCCC
Q 028195 67 VDLVVKGPASDQIHDFRDKISEKFEFVAHHK-GVHRFCFTNKSPY 110 (212)
Q Consensus 67 i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~-G~y~~Cf~n~~~~ 110 (212)
+.+..+|-+|+.+.... ..+++..|+.|.. =.|++++-|....
T Consensus 72 lki~F~dr~~e~i~~~i-~k~~~~~F~yP~~aysY~I~LinaG~~ 115 (128)
T PF15432_consen 72 LKIIFFDRQGEEIEEQI-IKNDSFEFTYPEEAYSYTISLINAGCQ 115 (128)
T ss_pred EEEEEEccCCCEeeEEE-EecCceEEeCCCCceEEEEEEeeCCCC
Confidence 44555677777666543 2345577877654 5799999998874
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.39 E-value=4.4e+02 Score=20.85 Aligned_cols=21 Identities=14% Similarity=-0.105 Sum_probs=11.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 028195 172 AMSRRAVYKAFWESTALVGAS 192 (212)
Q Consensus 172 s~~~rv~~~si~~i~vli~~~ 192 (212)
.....+..-.++-+++++++-
T Consensus 170 ~~~wf~~Gg~v~~~GlllGli 190 (206)
T PRK10884 170 IMQWFMYGGGVAGIGLLLGLL 190 (206)
T ss_pred HHHHHHHchHHHHHHHHHHHH
Confidence 344445555666666665543
No 153
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.37 E-value=4e+02 Score=20.69 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=39.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWEST 186 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~ 186 (212)
+....+.+.++.|...|..+.+-...+..|....-.-.......+..|+.++-.
T Consensus 14 ~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~ 67 (200)
T cd07624 14 PEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE 67 (200)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 446778888888888888888776666666666666666666677778777653
No 154
>PRK00523 hypothetical protein; Provisional
Probab=20.33 E-value=2.6e+02 Score=18.22 Aligned_cols=27 Identities=7% Similarity=0.263 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028195 179 YKAFWESTALVGASVLQVYLLRRLFER 205 (212)
Q Consensus 179 ~~si~~i~vli~~~~~Qv~~lkrfF~~ 205 (212)
.|-++-++.+++-.+.=.+.-|++|++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555666654
No 155
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.18 E-value=2.5e+02 Score=27.22 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 028195 140 EQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALV 189 (212)
Q Consensus 140 ~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~~~si~~i~vli 189 (212)
+.+..|..++++|..+.+-.-.--+-...+.+.|..--.+.||+|-++++
T Consensus 365 ~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhllli 414 (1102)
T KOG1924|consen 365 DDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLI 414 (1102)
T ss_pred hhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Confidence 45667778888888888777777777888888898889999999988865
No 156
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=20.14 E-value=2.6e+02 Score=18.19 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEe--ccccc---ccc--eEEEEec------cccceeeeeEe
Q 028195 46 TVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIH--DFRDK---ISE--KFEFVAH------HKGVHRFCFTN 106 (212)
Q Consensus 46 ~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~--~~~~~---~~g--~~~f~~~------~~G~y~~Cf~n 106 (212)
.+.+...+.... -.++.+.+..|+|..+. ...+. ..+ .+.|... ..|.+++=+.+
T Consensus 3 ~v~v~v~i~H~~------~gdL~i~L~SP~Gt~~~L~~~~~~d~~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D 70 (87)
T PF01483_consen 3 HVQVSVDITHPY------RGDLRITLISPSGTRSTLKDRRGSDDSGSGFLNWTFTSVAFWGESANGTWTLRVTD 70 (87)
T ss_dssp EEEEEEEEEESS------GGGEEEEEE-TT--EEEEE-SSTTHHHSTSEEEEEEEESTTTT-B--EEEEEEEEE
T ss_pred EEEEEEEEEcCC------cCCEEEEEECCCCCEEEEECCcCCCcccccccccEEEEEeecCccCCCEEEEEEEE
Confidence 355566666553 35899999999997543 33222 223 3444432 25777777777
No 157
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.08 E-value=3.6e+02 Score=19.71 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----H-----------HH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 141 QISKLEEALYNIQFEQHWLEAQTER-----Q-----------AI--VNEAMSRRAVYKAFWESTALVGASVLQVYLLRR 201 (212)
Q Consensus 141 ~l~~l~~~l~~i~~~q~y~~~re~~-----~-----------~~--~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkr 201 (212)
++....++|+..+++.+|.+.-.+- + .+ -.+-..-+-....++++++-++.+++=.|+.-+
T Consensus 23 E~~a~le~Lr~~~ee~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 23 ELKARLERLRAEQEEREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777777887744111 0 00 112222334556788888888888888885444
Done!