Query 028195
Match_columns 212
No_of_seqs 116 out of 1071
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 12:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 93.6 0.51 1.7E-05 39.8 10.0 82 32-122 288-385 (403)
2 2p9r_A Alpha-2-M, alpha-2-macr 92.5 1.5 5.3E-05 29.2 9.8 65 43-108 15-86 (102)
3 1z65_A PRPLP, prion-like prote 90.4 0.091 3.1E-06 26.9 1.0 19 5-23 4-22 (30)
4 4dzg_A PLIG; lysozyme inhibito 90.2 1.1 3.7E-05 31.0 6.8 66 32-108 28-96 (114)
5 2d7n_A Filamin-C; beta-sandwic 89.5 0.74 2.5E-05 30.7 5.2 46 64-109 21-69 (93)
6 2ee9_A Filamin-B; beta-sandwic 89.4 0.62 2.1E-05 31.2 4.8 46 64-109 29-77 (95)
7 2d7p_A Filamin-C; beta-sandwic 87.6 1.8 6E-05 29.8 6.3 56 49-109 30-88 (112)
8 2ee6_A Filamin-B; beta-sandwic 87.0 2.3 7.9E-05 28.6 6.6 44 64-108 41-86 (105)
9 2d7m_A Filamin-C; beta-sandwic 86.6 2.5 8.5E-05 29.0 6.7 56 50-109 33-91 (115)
10 3cnk_A Filamin-A; FLNA24, X-RA 86.5 3.4 0.00012 26.7 7.1 45 64-108 29-76 (89)
11 2dmb_A Filamin-B; beta-sandwic 86.5 2.8 9.7E-05 29.2 7.0 46 64-109 42-90 (124)
12 3rgh_A Filamin-A; cell adhesio 85.9 3.6 0.00012 27.4 7.0 45 64-108 38-85 (100)
13 2dj4_A Filamin-B; beta-sandwic 85.8 3.2 0.00011 28.0 6.9 57 49-109 31-90 (108)
14 2eea_A Filamin-B; beta-sandwic 85.3 4.9 0.00017 27.4 7.7 44 64-108 51-96 (115)
15 2dlg_A Filamin-B; beta-sandwic 85.1 1.3 4.5E-05 29.9 4.5 46 64-109 30-78 (102)
16 2bp3_A Filamin A; structural p 82.7 4.8 0.00016 26.5 6.5 44 64-108 36-81 (97)
17 2e9j_A Filamin-B; beta-sandwic 82.5 2.5 8.4E-05 29.2 5.2 56 50-109 43-101 (119)
18 2dmc_A Filamin-B; beta-sandwic 81.5 0.81 2.8E-05 31.7 2.3 46 64-109 44-92 (116)
19 2k9u_A Gamma filamin; cytoskel 80.5 6.9 0.00024 26.9 7.0 45 64-109 48-94 (119)
20 2dic_A Filamin-B; beta-sandwic 80.3 6.5 0.00022 26.3 6.6 44 64-108 41-86 (105)
21 2w0p_A Filamin-A; alternative 79.7 7.7 0.00026 25.3 6.7 44 64-108 33-78 (94)
22 1v05_A Filamin C; actin-bindin 79.6 6.8 0.00023 25.6 6.4 45 64-108 36-83 (96)
23 3d33_A Domain of unknown funct 79.1 10 0.00036 25.8 7.2 57 44-109 37-98 (108)
24 2nqc_A Filamin-C; immunoglobul 78.6 9 0.00031 27.2 7.2 55 49-108 64-119 (138)
25 1jcd_A Major outer membrane li 77.7 8.1 0.00028 22.7 5.5 44 133-176 4-47 (52)
26 2dia_A Filamin-B; beta-sandwic 77.6 6.2 0.00021 26.8 5.9 45 64-108 41-88 (113)
27 4b7l_A Filamin-B; structural p 76.9 7.5 0.00026 32.2 7.2 56 49-108 275-335 (347)
28 4fxk_A Complement C4 beta chai 75.9 17 0.0006 32.1 9.9 64 43-108 133-202 (656)
29 2k7p_A Filamin-A; IG-like, ABP 73.9 13 0.00044 27.7 7.3 55 49-108 116-172 (188)
30 2d7o_A Filamin-C; beta-sandwic 73.7 6.1 0.00021 26.8 5.0 44 64-108 41-86 (111)
31 2di9_A Filamin-B; beta-sandwic 73.6 13 0.00043 26.0 6.8 45 64-109 61-107 (131)
32 3c12_A FLGD, flagellar protein 73.5 21 0.00071 25.1 8.0 43 65-107 39-92 (138)
33 3osv_A Flagellar basal-BODY RO 72.9 10 0.00034 26.9 6.1 57 45-108 24-91 (138)
34 2hr0_A Complement C3 beta chai 71.8 38 0.0013 30.1 11.1 64 43-108 119-190 (645)
35 2di8_A Filamin-B; beta-sandwic 71.6 16 0.00055 24.6 6.8 44 64-108 41-86 (111)
36 2eec_A Filamin-B; beta-sandwic 70.7 14 0.00047 25.7 6.3 54 50-108 41-95 (125)
37 3irp_X URO-adherence factor A; 68.1 7.5 0.00026 33.2 5.3 45 64-108 329-373 (429)
38 2ds4_A Tripartite motif protei 66.9 25 0.00085 23.3 7.6 46 64-109 48-98 (113)
39 3hd7_B Syntaxin-1A; membrane p 66.5 27 0.00092 23.6 9.0 20 133-152 21-40 (109)
40 4g9s_B Inhibitor of G-type lys 66.4 27 0.00091 23.5 7.0 64 32-107 26-92 (111)
41 1qfh_A Protein (gelation facto 65.6 11 0.00038 28.5 5.4 45 64-109 134-181 (212)
42 2k7p_A Filamin-A; IG-like, ABP 63.9 12 0.0004 27.9 5.2 45 64-108 33-80 (188)
43 2pn5_A TEP1R, thioester-contai 63.6 48 0.0016 32.3 10.6 66 43-108 113-185 (1325)
44 3hrz_A Cobra venom factor; ser 63.5 27 0.00091 31.2 8.2 45 64-108 136-183 (627)
45 1wlh_A Gelation factor; ABP-12 62.3 14 0.00047 29.7 5.7 45 64-109 233-280 (311)
46 2k7q_A Filamin-A; IG-like, ABP 61.5 16 0.00055 27.1 5.6 54 50-108 117-172 (191)
47 2dib_A Filamin-B; beta-sandwic 61.3 5.4 0.00018 27.7 2.7 46 64-109 56-104 (128)
48 2k7q_A Filamin-A; IG-like, ABP 59.7 17 0.00058 27.0 5.4 45 64-108 30-77 (191)
49 2k8e_A UPF0339 protein YEGP; p 57.4 38 0.0013 23.8 6.5 61 43-109 13-91 (130)
50 3hd7_A Vesicle-associated memb 55.8 39 0.0013 22.0 7.1 23 158-181 44-66 (91)
51 1qle_D Cytochrome AA3, ccytoch 55.7 24 0.00083 19.7 4.2 28 166-193 13-40 (43)
52 2b39_A C3; thioester, immune d 54.5 63 0.0022 32.4 9.8 63 43-107 140-210 (1661)
53 3fn2_A Putative sensor histidi 54.3 20 0.00069 24.1 4.3 39 67-105 50-91 (106)
54 3prx_B Cobra venom factor; imm 53.6 60 0.0021 32.6 9.4 45 64-108 158-205 (1642)
55 1m56_D Cytochrome C oxidase; m 52.6 32 0.0011 20.0 4.7 29 166-194 21-49 (51)
56 1kd8_B GABH BLL, GCN4 acid bas 50.4 27 0.00094 18.5 4.0 27 134-160 2-28 (36)
57 1gl2_D Syntaxin 8, vesicle tra 49.1 41 0.0014 20.2 5.5 46 132-177 8-53 (65)
58 2j3s_A Filamin-A; cytoskeleton 48.2 15 0.00052 29.2 3.6 45 64-108 130-177 (288)
59 3cu7_A Complement C5; Mg domai 48.0 61 0.0021 32.5 8.5 64 43-108 137-207 (1676)
60 3c3f_A Alpha/beta peptide with 47.2 30 0.001 18.1 4.0 27 134-160 2-28 (34)
61 4acq_A Alpha-2-macroglobulin; 45.3 1.1E+02 0.0039 30.2 9.8 64 43-108 117-188 (1451)
62 2nps_D Syntaxin-6; vesicle fus 44.4 58 0.002 20.6 6.4 46 132-177 18-63 (82)
63 3sd2_A Putative member of DUF3 42.1 59 0.002 21.7 5.1 54 46-108 35-91 (101)
64 4div_A ORF48; distal tail prot 41.8 1.3E+02 0.0046 24.0 12.0 126 48-176 31-174 (299)
65 3c75_A Amicyanin; copper prote 41.6 84 0.0029 21.6 7.4 14 89-102 104-117 (132)
66 1wlh_A Gelation factor; ABP-12 41.0 35 0.0012 27.2 4.8 45 64-108 142-189 (311)
67 2x5p_A FBA2, fibronectin bindi 40.5 37 0.0013 23.4 4.2 52 65-118 43-97 (121)
68 1uo4_A General control protein 39.8 42 0.0014 17.6 4.1 26 135-160 3-28 (34)
69 1kd8_A GABH AIV, GCN4 acid bas 38.4 46 0.0016 17.7 4.2 27 134-160 2-28 (36)
70 3jqw_A COLH protein, collagena 38.3 95 0.0032 21.3 10.4 67 32-109 37-106 (121)
71 1qfh_A Protein (gelation facto 35.9 45 0.0015 25.0 4.4 45 64-108 43-90 (212)
72 2j3s_A Filamin-A; cytoskeleton 35.0 79 0.0027 24.9 5.9 44 64-108 227-272 (288)
73 2pnv_A Small conductance calci 34.6 52 0.0018 18.3 3.3 20 136-155 19-38 (43)
74 3afg_A Subtilisin-like serine 34.3 1.2E+02 0.004 26.5 7.3 56 64-120 458-515 (539)
75 1dip_A Delta-sleep-inducing pe 33.7 87 0.003 19.6 4.5 32 130-161 12-43 (78)
76 1sfc_D Protein (SNAP-25B), pro 33.3 95 0.0033 19.8 5.3 46 133-178 29-74 (87)
77 2akf_A Coronin-1A; coiled coil 32.1 53 0.0018 16.5 4.3 18 137-154 3-20 (32)
78 3swy_A Cyclic nucleotide-gated 31.2 75 0.0026 18.0 5.5 14 139-152 4-17 (46)
79 2oqq_A Transcription factor HY 31.0 70 0.0024 17.6 3.9 25 136-160 13-37 (42)
80 1n7s_D SNAP-25A; neuronal snar 30.5 89 0.003 18.6 5.3 45 133-177 10-54 (66)
81 3ogl_Q JAZ1 incomplete degron 29.5 22 0.00074 16.6 1.0 12 197-208 8-19 (21)
82 2bni_A General control protein 28.4 70 0.0024 16.7 4.1 26 135-160 3-28 (34)
83 2r2v_A GCN4 leucine zipper; co 28.3 70 0.0024 16.7 4.0 26 135-160 3-28 (34)
84 2wq1_A General control protein 27.6 71 0.0024 16.6 3.9 25 135-159 2-26 (33)
85 3hd7_A Vesicle-associated memb 27.3 1.3E+02 0.0044 19.4 9.4 31 140-170 33-63 (91)
86 3isy_A Bsupi, intracellular pr 27.2 1.5E+02 0.0052 20.3 5.9 39 44-83 17-60 (120)
87 3m48_A General control protein 27.2 73 0.0025 16.6 4.2 26 135-160 2-27 (33)
88 3bid_A UPF0339 protein NMB1088 27.2 1.1E+02 0.0037 18.5 4.4 20 64-83 10-29 (64)
89 2oxj_A Hybrid alpha/beta pepti 26.8 75 0.0026 16.6 4.0 24 135-158 3-26 (34)
90 2w6b_A RHO guanine nucleotide 26.6 1E+02 0.0035 18.0 6.4 41 137-177 7-50 (56)
91 2yko_A LINE-1 ORF1P; RNA-bindi 25.7 1.8E+02 0.006 22.5 6.1 23 134-156 7-29 (233)
92 3gf8_A Putative polysaccharide 25.6 32 0.0011 27.6 2.1 43 65-108 37-86 (296)
93 1gd2_E Transcription factor PA 25.6 83 0.0028 19.4 3.5 29 132-160 28-56 (70)
94 3l4f_A RHO guanine nucleotide 25.1 1.2E+02 0.004 18.2 6.6 41 137-177 4-47 (61)
95 3e8v_A Possible transglutamina 23.8 96 0.0033 19.8 3.6 43 64-106 17-69 (82)
96 3g12_A Putative lactoylglutath 23.8 55 0.0019 21.8 2.8 13 69-81 105-117 (128)
97 3swf_A CGMP-gated cation chann 23.4 1.4E+02 0.0049 18.6 5.3 20 135-154 9-28 (74)
98 2k49_A UPF0339 protein SO_3888 22.8 1.9E+02 0.0064 19.8 6.4 53 49-107 3-73 (118)
99 2r5o_A Putative ATP binding co 22.8 71 0.0024 23.4 3.4 36 43-81 68-103 (188)
100 2lme_A Adhesin YADA; trimeric 22.6 1E+02 0.0035 20.5 3.9 26 131-156 7-32 (105)
101 2knc_A Integrin alpha-IIB; tra 21.7 1.3E+02 0.0045 17.6 4.3 23 186-208 22-44 (54)
102 3twe_A Alpha4H; unknown functi 21.4 81 0.0028 15.0 3.3 12 140-151 8-19 (27)
103 2l8s_A Integrin alpha-1; trans 21.4 1.3E+02 0.0045 17.5 4.2 23 186-208 19-41 (54)
104 1l4a_D S-SNAP25 fusion protein 21.0 1.4E+02 0.0048 19.0 4.1 45 133-177 30-74 (87)
105 3c3g_A Alpha/beta peptide with 20.5 1E+02 0.0035 16.0 3.9 24 136-159 3-26 (33)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=93.58 E-value=0.51 Score=39.85 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=50.2
Q ss_pred CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcC-----C---C--CeEeccccc-c---cceEEEEeccc
Q 028195 32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGP-----A---S--DQIHDFRDK-I---SEKFEFVAHHK 97 (212)
Q Consensus 32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp-----~---g--~~v~~~~~~-~---~g~~~f~~~~~ 97 (212)
+...+-.++...|..|.=.|.+.+ .+|.|.|+-. + | ..+...... . -..=++.+++.
T Consensus 288 ~~~~v~~~v~~~g~~l~W~f~~~~---------~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~~~~~~ 358 (403)
T 1olm_A 288 SSHQVEYEILFPGCVLRWQFMSDG---------ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDP 358 (403)
T ss_dssp CEEEEEEEECSTTCEEEEEEEESS---------SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCSC
T ss_pred CEEEEEEEEcCCCCEEEEEEEecC---------CcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEEEcCCC
Confidence 445555555534667777776632 2677777521 1 1 122221111 1 01235789999
Q ss_pred cceeeeeEecCC--CceEEEEEEEEcc
Q 028195 98 GVHRFCFTNKSP--YHETIDFDVHVGH 122 (212)
Q Consensus 98 G~y~~Cf~n~~~--~~~~V~f~~~~g~ 122 (212)
|.|.++|+|+.+ ..|.|.+.+++..
T Consensus 359 G~y~l~fdNs~S~~~~k~l~y~v~v~~ 385 (403)
T 1olm_A 359 GIYVLRFDNTYSFIHAKKVNFTVEVLL 385 (403)
T ss_dssp EEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred eEEEEEEeccccceeceEEEEEEEEeC
Confidence 999999999998 4799998888754
No 2
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=92.54 E-value=1.5 Score=29.19 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=41.6
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc--ccce--EEEEec---cccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK--ISEK--FEFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~--~~g~--~~f~~~---~~G~y~~Cf~n~~ 108 (212)
.|+.|.+..-+.+.+.. ......+.+.|.||+|+.+.++... ..|. .+|..+ ..|.|++......
T Consensus 15 PGetV~~~~~~~~~~~~-p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~ 86 (102)
T 2p9r_A 15 PGQTVKFRVVSMDENFH-PLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS 86 (102)
T ss_dssp TTCEEEEEEEEECGGGC-BCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred CCCEEEEEEEEECCCCc-CCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence 57888877666654321 0123336899999999998874322 3454 355543 4699999998754
No 3
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=90.43 E-value=0.091 Score=26.87 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhhhcc
Q 028195 5 PVGFCIAAILAFIFSPQAV 23 (212)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (212)
-+|.||+|+++.|++..++
T Consensus 4 hLG~~wlai~c~LLfs~Ls 22 (30)
T 1z65_A 4 RLGTWWVAILCMLLASHLS 22 (30)
T ss_dssp SCSSHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHhhHH
Confidence 4789999999988877654
No 4
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=90.23 E-value=1.1 Score=31.03 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=45.5
Q ss_pred CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCe---EecccccccceEEEEeccccceeeeeEecC
Q 028195 32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQ---IHDFRDKISEKFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~---v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
+...+...+. +|+.+.+.. +. +..+.+.|.+|+++. ++.......+.|+-+.|.+|.|++=+....
T Consensus 28 ~~~~Y~~~a~-aGQ~l~V~l---s~-------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~r 96 (114)
T 4dzg_A 28 DTIHYTLVAX-AGQTMTVXI---GG-------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQMR 96 (114)
T ss_dssp CCEEEECCC--CCCEEEC-C---EE-------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECCH
T ss_pred CceEEEEEec-CCCEEEEEe---CC-------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEecc
Confidence 3567777888 799888775 22 225778999999874 344333334588899999999999998763
No 5
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=89.51 E-value=0.74 Score=30.67 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
..++.+.|.+|+|..+.-. .+..+| ...|++++.|.|.+++.-...
T Consensus 21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~ 69 (93)
T 2d7n_A 21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN 69 (93)
T ss_dssp SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence 4579999999999865432 223455 568889999999999986654
No 6
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.43 E-value=0.62 Score=31.20 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
..++.+.|.+|+|..+.-. .+..+| ...|++.+.|.|++++.-...
T Consensus 29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~ 77 (95)
T 2ee9_A 29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS 77 (95)
T ss_dssp TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence 4589999999999765432 223455 457888999999999986654
No 7
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=87.55 E-value=1.8 Score=29.76 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=38.1
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
.+|.+...+. +..+.+.|.+|+|..+.-. ....+| ...|++++.|.|.+.+.-...
T Consensus 30 ~~F~V~~~~a-----~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~ 88 (112)
T 2d7p_A 30 ASFAVQLNGA-----RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA 88 (112)
T ss_dssp EEEEEECTTC-----CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred EEEEEEeCCC-----CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCe
Confidence 4455555442 3479999999999755432 223355 458889999999999886554
No 8
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.98 E-value=2.3 Score=28.64 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+ +-.+..+| ..+|+++..|.|.+.+.-..
T Consensus 41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (105)
T 2ee6_A 41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND 86 (105)
T ss_dssp CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence 4578999999998655 32334456 56899999999999998554
No 9
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=86.65 E-value=2.5 Score=28.96 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=37.5
Q ss_pred EEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+|.+...+. ....+.+.|.+|+|..+... .+..+| ..+|++++.|.|.+.+.-...
T Consensus 33 ~F~V~~~da----G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~ 91 (115)
T 2d7m_A 33 EFTIDARDA----GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD 91 (115)
T ss_dssp EEEEEESSS----CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred EEEEEECCC----CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence 455555442 24579999999998654322 223455 457888999999999986554
No 10
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=86.53 E-value=3.4 Score=26.73 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCeEec-ccccccce--EEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHD-FRDKISEK--FEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.- -.+..+|. .+|++++.|.|.+.+.-..
T Consensus 29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 76 (89)
T 3cnk_A 29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH 76 (89)
T ss_dssp SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence 457889999999863321 22234564 5788899999999887554
No 11
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=86.51 E-value=2.8 Score=29.24 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+|..+.-+ .+..+| ...|++++.|.|.+++.-...
T Consensus 42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~ 90 (124)
T 2dmb_A 42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV 90 (124)
T ss_dssp SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence 5579999999998654332 222456 457889999999999986553
No 12
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=85.87 E-value=3.6 Score=27.44 Aligned_cols=45 Identities=7% Similarity=0.096 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.-. .+..+| ..+|+++..|.|.+.+.-..
T Consensus 38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g 85 (100)
T 3rgh_A 38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG 85 (100)
T ss_dssp SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 4579999999998654322 233455 45788888899988876443
No 13
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=85.82 E-value=3.2 Score=28.03 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=37.7
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecCC
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~ 109 (212)
.+|.+...+. ....+.+.|.+|+|..+.-. .+..+|. .+|++++.|.|.+.+.-...
T Consensus 31 ~~F~V~~~~a----G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~ 90 (108)
T 2dj4_A 31 QSFTVDSSKA----GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADE 90 (108)
T ss_dssp EEEEEECTTT----CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred EEEEEEECCC----CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence 3455544332 35679999999999655332 2334564 57888899999999886553
No 14
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.27 E-value=4.9 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|++..+ +-.+..+| ..+|++++.|.|.+.+.-..
T Consensus 51 ~~~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 96 (115)
T 2eea_A 51 EGGLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYND 96 (115)
T ss_dssp SSCEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESS
T ss_pred CCceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 4578999999998544 22334566 46888999999999988544
No 15
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=85.07 E-value=1.3 Score=29.90 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+|..+.-. .+..+|. .+|++++.|.|.+.+.-...
T Consensus 30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~ 78 (102)
T 2dlg_A 30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ 78 (102)
T ss_dssp GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence 4579999999999765542 2233554 57889999999999985553
No 16
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=82.71 E-value=4.8 Score=26.51 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+.-. +..+| ..+|++++.|.|.+.+.-..
T Consensus 36 ~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g 81 (97)
T 2bp3_A 36 EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNE 81 (97)
T ss_dssp SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence 4578888999987544322 23456 46788899999999988544
No 17
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.46 E-value=2.5 Score=29.19 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=37.1
Q ss_pred EEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
+|.+...+. ....+.+.|.+|+|..+.-. .+..+| ..+|++...|.|.+.+.-...
T Consensus 43 ~F~V~~~da----G~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~ 101 (119)
T 2e9j_A 43 DFAIDARDA----GEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGD 101 (119)
T ss_dssp EEEEEESSC----CCCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSC
T ss_pred EEEEEECCC----CCCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence 455555442 25679999999998644322 223456 457888999999999886553
No 18
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=81.51 E-value=0.81 Score=31.75 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+|..+--. ....+| ..+|++.+.|.|.+.+.-...
T Consensus 44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~ 92 (116)
T 2dmc_A 44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN 92 (116)
T ss_dssp STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence 4578999999999754332 222355 458899999999999986553
No 19
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=80.51 E-value=6.9 Score=26.86 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|.+..+.- .+..+| ..+|+++..|.|.+.+.-...
T Consensus 48 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~ 94 (119)
T 2k9u_A 48 AGGLSIAVEGPSKAEIAF-EDRKDGSCGVSYVVQEPGDYEVSIKFNDE 94 (119)
T ss_dssp SEEEEEEEESSSCCEEEE-ECCSSSEEEEEEECCSSEEEEEEEEETSC
T ss_pred CCcEEEEEeCCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECCE
Confidence 557889999998843322 233456 468889999999999985543
No 20
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=80.28 E-value=6.5 Score=26.35 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+.-. +..+| ..+|++...|.|.+.+.-..
T Consensus 41 ~g~l~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (105)
T 2dic_A 41 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGG 86 (105)
T ss_dssp SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCeEEEE-ECCCCeEEEEEEeCCCeEEEEEEEECC
Confidence 4578899999987544322 23456 46888889999999988554
No 21
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=79.72 E-value=7.7 Score=25.32 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+.-. +..+| ..+|++++.|.|.+.+.-..
T Consensus 33 ~~~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g 78 (94)
T 2w0p_A 33 AGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNE 78 (94)
T ss_dssp SCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence 4468888999988544322 23456 46888999999999988544
No 22
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=79.56 E-value=6.8 Score=25.64 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCeEe-cccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIH-DFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+. +-.+..+| ..+|++++.|.|.+.+.-..
T Consensus 36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 83 (96)
T 1v05_A 36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD 83 (96)
T ss_dssp SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence 45788999999985332 11223456 45788889999998887544
No 23
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=79.05 E-value=10 Score=25.79 Aligned_cols=57 Identities=4% Similarity=-0.070 Sum_probs=39.2
Q ss_pred CcEEEEEEEEEECCCCCCCCCCceEEEEE-cCCCCeEeccccccc--ceEEEEe--ccccceeeeeEecCC
Q 028195 44 GDTVHASFVVIKADSSWYSSHDGVDLVVK-GPASDQIHDFRDKIS--EKFEFVA--HHKGVHRFCFTNKSP 109 (212)
Q Consensus 44 ~~~i~~~y~v~~~~~~~~~~~~~i~~~i~-dp~g~~v~~~~~~~~--g~~~f~~--~~~G~y~~Cf~n~~~ 109 (212)
+..|.++|... -.++.+.|+ |.+|+++|+..-... ..+.+.. ..+|+|.+=+.+...
T Consensus 37 ~~~L~I~F~~~---------~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~~ 98 (108)
T 3d33_A 37 GYLLTLKNASP---------DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTPS 98 (108)
T ss_dssp TTEEEEEESSC---------CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEESS
T ss_pred CCEEEEEECCc---------CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCCC
Confidence 45666666322 347999999 788999998654333 3455554 468999999988843
No 24
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=78.62 E-value=9 Score=27.25 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=36.8
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc-eEEEEeccccceeeeeEecC
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE-KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~ 108 (212)
.+|.+...+. ....+.+.|.+|++..+.-.+ ..+| ..+|++.+.|.|.+.+.-..
T Consensus 64 ~~F~V~t~da----G~g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g 119 (138)
T 2nqc_A 64 SEFIVNTLNA----GSGALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGG 119 (138)
T ss_dssp EEEEEECTTS----CSCCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESS
T ss_pred eEEEEEEcCC----CCCcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECC
Confidence 3455554442 245799999999986554322 3455 45788899999999888554
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.70 E-value=8.1 Score=22.67 Aligned_cols=44 Identities=2% Similarity=-0.065 Sum_probs=28.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRR 176 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~r 176 (212)
.++++|...++.|...++.+..+...++.--..-++-....|.|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888887777664333333333444444
No 26
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=77.60 E-value=6.2 Score=26.77 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=32.1
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.-. .+..+| ..+|+++..|.|++.+.-..
T Consensus 41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 88 (113)
T 2dia_A 41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG 88 (113)
T ss_dssp SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence 4578999999987544322 233456 45788999999999998655
No 27
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=76.94 E-value=7.5 Score=32.16 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=37.5
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc---cccccc--eEEEEeccccceeeeeEecC
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF---RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~---~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
.+|.|...+. ....+.+.|.+|+|..+.-. .+..+| ..+|++.+.|.|.+-+.-..
T Consensus 275 ~~F~Vdt~~A----G~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~P~~~G~~~I~V~~~g 335 (347)
T 4b7l_A 275 AKFTVDTISA----GQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVTGLHKVTVLFAG 335 (347)
T ss_dssp EEEEEECTTT----CSCCEEEEEECTTSCEEECEEEESSTTCSEEEEEECCCSSSEEEEEEEETT
T ss_pred EEEEEEeCCC----CCCceEEEEECCCCCeecCEEEEEcCCCCEEEEEEEECCCEeEEEEEEECC
Confidence 4455554432 35689999999999765422 223355 45788999999998877544
No 28
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=75.88 E-value=17 Score=32.13 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=42.1
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc-ccceE--EEEec---cccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK-ISEKF--EFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~-~~g~~--~f~~~---~~G~y~~Cf~n~~ 108 (212)
+|+.|++..-+.+.+. .+.+..+.+.|.||+|+.+.++.-. ..|-+ .|..+ ..|.|++-+....
T Consensus 133 PGqtV~~r~i~~d~~~--~p~~~~~~v~i~dp~g~~v~~~~~~~~~G~~~~~f~Lp~~~~~G~w~i~v~~~~ 202 (656)
T 4fxk_A 133 PGQRVRYRVFALDQKM--RPSTDTITVMVENSHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSD 202 (656)
T ss_dssp TTCEEEEEEEEECSSS--SBCCCCEEEEEECTTCCEEEEEEECCTTSEEEEEEECCTTCCSEEEEEEEEESS
T ss_pred CCCEEEEEEEEECCcc--CcCcccceEEEECCCCcEEeeeEEecCCceEEEEecCCCCCCCcCEEEEEEEcC
Confidence 5778776655554432 2345679999999999998765422 24543 44443 3599999997543
No 29
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=73.90 E-value=13 Score=27.69 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=37.2
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
..|.+...+. ....+.+.|.+|.+..+.- .+..+| ..+|++...|.|.+++.-..
T Consensus 116 ~~F~V~t~da----g~g~l~v~I~gp~~~~~~~-~d~~dGty~v~Y~p~~~G~y~i~V~~~g 172 (188)
T 2k7p_A 116 ATFTVNTKDA----GEGGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYNE 172 (188)
T ss_dssp EEEEEECTTC----CSSCEEEEEECSSCCEEEE-EECTTSEEEEEEECCSSEEEEEEEEETT
T ss_pred EEEEEEeCCC----CCCCeEEEEeCCCCCeEEE-EECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence 3445554432 2457889999998755432 233466 56888999999999998554
No 30
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=73.70 E-value=6.1 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+. -.+..+| ...|++++.|.|.+.+.-..
T Consensus 41 ~~~l~v~v~gp~~~~~~-v~d~~dGty~V~Y~p~~~G~y~I~V~~~g 86 (111)
T 2d7o_A 41 EGGLSLAVEGPSKAEIT-CKDNKDGTCTVSYLPTAPGDYSIIVRFDD 86 (111)
T ss_dssp SSCBCCEEESSSCCCBC-CCCCSSSEEEEEECCSSCEEEEEECBBSS
T ss_pred CCcEEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeEEEEEEEECC
Confidence 44678889999865442 2334466 45788899999999998554
No 31
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=73.64 E-value=13 Score=26.02 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|.+..+.- .+..+| ..+|++++.|.|.+.+.-...
T Consensus 61 ~~~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~ 107 (131)
T 2di9_A 61 TGGLGLTVEGPCEAKIEC-SDNGDGTCSVSYLPTKPGEYFVNILFEEV 107 (131)
T ss_dssp SSCEEEEECSSSCCEEEE-EECSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred CCeeEEEEEecCCceEEE-EECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence 457889999998854432 233456 457889999999999985543
No 32
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=73.55 E-value=21 Score=25.12 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCeEeccc--ccccceEEEEec---------cccceeeeeEec
Q 028195 65 DGVDLVVKGPASDQIHDFR--DKISEKFEFVAH---------HKGVHRFCFTNK 107 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~ 107 (212)
..+.+.|+|.+|+++..-. ..+.|.+.|... .+|.|++.+.-.
T Consensus 39 ~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~ 92 (138)
T 3c12_A 39 GFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT 92 (138)
T ss_dssp EEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence 4799999999999998743 244566666643 258999999855
No 33
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=72.90 E-value=10 Score=26.86 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=38.4
Q ss_pred cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc--ccccceEEEEec---------cccceeeeeEecC
Q 028195 45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR--DKISEKFEFVAH---------HKGVHRFCFTNKS 108 (212)
Q Consensus 45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~ 108 (212)
..+.+.|..... ...+.+.|+|.+|+++++-. ..+.|.+.|... .+|.|++-+.-..
T Consensus 24 ~~~~~~~~l~~~-------a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~~ 91 (138)
T 3osv_A 24 DTFKASLNLPVS-------SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSI 91 (138)
T ss_dssp SCEEEEEEESBC-------EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEEE
T ss_pred CeEEEEEECCCC-------CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEEc
Confidence 346666766433 23799999999999998743 234566666543 2578999887553
No 34
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=71.79 E-value=38 Score=30.08 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=42.6
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc---ccce--EEEEec---cccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK---ISEK--FEFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~---~~g~--~~f~~~---~~G~y~~Cf~n~~ 108 (212)
.|+.|.+..-+.+.+. .+....+.+.|.||+|+.+.+..-. ..|- ..|..+ ..|.|++-+....
T Consensus 119 PGqtV~~r~i~~d~~~--~p~~~~v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~ 190 (645)
T 2hr0_A 119 PGSTVLYRIFTVNHKL--LPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYEN 190 (645)
T ss_dssp TTSEEEEEEEEECTTS--CBCCCEEEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETT
T ss_pred CCCEEEEEEEEECCCC--cccCceEEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEEEECC
Confidence 5788877766665432 2233578999999999998874322 3453 355543 4599999998743
No 35
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=71.64 E-value=16 Score=24.65 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+-.+.- .+..+| ..+|++++.|.|.+.+.-..
T Consensus 41 ~g~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (111)
T 2di8_A 41 YGGISLAVEGPSKVDIQT-EDLEDGTCKVSYFPTVPGVYIVSTKFAD 86 (111)
T ss_dssp BCCEEEEEESSSCCCEEC-CBCTTSCEEEEECCCSCSEEEEEEEESS
T ss_pred CCceEEEEEcCCCceEEE-EECCCCEEEEEEEeCCCeEEEEEEEECC
Confidence 346889999998754432 233456 56888899999999888554
No 36
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.71 E-value=14 Score=25.68 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=36.2
Q ss_pred EEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc-eEEEEeccccceeeeeEecC
Q 028195 50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE-KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~ 108 (212)
.|.+...+. ....+.+.|.+|++..+--. +..+| ...|++.+.|.|.+.+.-..
T Consensus 41 ~F~v~t~da----G~~~l~v~i~gp~~~~~~~~-d~~dGy~V~Y~P~~~G~y~I~V~~~g 95 (125)
T 2eec_A 41 EFFINTTRA----GPGTLSVTIEGPSKVKMDCQ-ETPEGYKVMYTPMAPGNYLISVKYGG 95 (125)
T ss_dssp EEEEECTTT----CSCCEEEEEESSSCCCCEEE-ECSSSEEEEECCSSCEEEEEEEEESS
T ss_pred EEEEEEcCC----CCCcEEEEEECCCCCcceeE-ECCCCEEEEEEcCCCeEEEEEEEECC
Confidence 355555442 24579999999988644322 23456 45788899999999888555
No 37
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=68.14 E-value=7.5 Score=33.21 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 108 (212)
-.++.|.+.+|+|.++....-...|.|.|.--..|.|.+-|..+.
T Consensus 329 l~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P~ 373 (429)
T 3irp_X 329 AAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPE 373 (429)
T ss_dssp CTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCCT
T ss_pred cCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECCC
Confidence 357889999999998877666679999999989999999997654
No 38
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.93 E-value=25 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCC--CeEe-cccccccce--EEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPAS--DQIH-DFRDKISEK--FEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g--~~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|++ ..+. +-.+..+|. .+|++...|.|.+++.-...
T Consensus 48 g~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g~ 98 (113)
T 2ds4_A 48 GDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQ 98 (113)
T ss_dssp CCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESSC
T ss_pred CceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECCE
Confidence 3468899999886 2222 222334564 57888899999999886553
No 39
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=66.52 E-value=27 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=10.1
Q ss_pred cCcchHHHHHHHHHHHHHHH
Q 028195 133 EHFNPLLEQISKLEEALYNI 152 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i 152 (212)
+.+..++..+..|.+...++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dl 40 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDM 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444
No 40
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=66.37 E-value=27 Score=23.52 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=43.7
Q ss_pred CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc---cccccceEEEEeccccceeeeeEec
Q 028195 32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF---RDKISEKFEFVAHHKGVHRFCFTNK 107 (212)
Q Consensus 32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~---~~~~~g~~~f~~~~~G~y~~Cf~n~ 107 (212)
+...+...+. +|+.++++.. + + ...+.|..|.+...... ......+++.+.|.+|.|++=+...
T Consensus 26 ~~~~Y~~~a~-aGQ~l~v~l~--s-~--------~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~I~V~~~ 92 (111)
T 4g9s_B 26 DYDTYTFYAK-KGQKVHVSIS--N-E--------GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVLQT 92 (111)
T ss_dssp CCEEEEEEEC-TTCEEEEEES--C-T--------TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEEEEEECC
T ss_pred CceEEEEEec-CCCEEEEEEe--c-C--------CccEEEECCCCccccccccccccCCceEEEEecCCccEEEEEEec
Confidence 4567888888 7998887632 1 1 35677899976543321 2222346888899999999998744
No 41
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=65.63 E-value=11 Score=28.47 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCeEe-cccccccc--eEEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIH-DFRDKISE--KFEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+| .+. .-.+..+| ..+|++...|.|.+++.-...
T Consensus 134 ~~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~ 181 (212)
T 1qfh_A 134 GDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGK 181 (212)
T ss_dssp CCCEEEEEEECCS-EEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTE
T ss_pred CCcEEEEEECCCC-ceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence 4578999999998 332 22234567 568899999999999986653
No 42
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=63.94 E-value=12 Score=27.91 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
..++.+.|.+|+|+...-. .+..+| ...|++.+.|.|++.+.-..
T Consensus 33 ~~~v~~~v~~PsG~~~~~~v~d~~dgty~v~y~P~~~G~h~i~V~~~g 80 (188)
T 2k7p_A 33 KGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDN 80 (188)
T ss_dssp SSCEEEEEECTTSCEECCEEEECSSSEEEEEECCCCCEEEEEEEEETT
T ss_pred CceEEEEEECCCCCccccEEEeCCCCEEEEEEEccccEeEEEEEEECC
Confidence 3479999999999865422 223456 45888999999999998764
No 43
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=63.61 E-value=48 Score=32.31 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc--ccceE--EEEec---cccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK--ISEKF--EFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~--~~g~~--~f~~~---~~G~y~~Cf~n~~ 108 (212)
+|+.|.+.--+.+.+.........+.+.|.||+|+.+.++... ..|.+ +|..+ ..|.|++=+....
T Consensus 113 PGqtV~~r~~~~~~~~~p~~~~~~v~v~l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~~~~~ 185 (1325)
T 2pn5_A 113 PGDTVNFRVIVLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEG 185 (1325)
T ss_dssp TTCEEEEEEEEEETTSSCCSSCCEEEEEEECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEETT
T ss_pred CCCEEEEEEEEecCCccccccCccEEEEEECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEEEeCC
Confidence 5777777766665442110112358999999999999876543 34543 45443 4599999988653
No 44
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=63.52 E-value=27 Score=31.25 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEec---cccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~---~~G~y~~Cf~n~~ 108 (212)
+..+.+.|.||+|+.+.+..-...-.+.|..+ ..|.|++.+....
T Consensus 136 ~~~~~v~i~dP~g~~i~~~~~~~~~~~~f~Lp~~~~~G~w~i~v~~~~ 183 (627)
T 3hrz_A 136 NKTVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEH 183 (627)
T ss_dssp --CEEEEEECTTCCEEEEEEEBTTBCCCEECCSSCCCEEEEEEEEETT
T ss_pred CccEEEEEECCCCCEEEEEEeccceEEEEECCCCCCCeeEEEEEEECC
Confidence 45788999999999998533222112344433 4699999998644
No 45
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=62.32 E-value=14 Score=29.69 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCCCeEec-ccccccce--EEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHD-FRDKISEK--FEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+| .+.- -.+..+|. .+|++...|.|.+++.-...
T Consensus 233 ~~~l~v~i~~p~g-~~~~~v~d~~~G~y~v~y~p~~~G~y~i~V~~~g~ 280 (311)
T 1wlh_A 233 GDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGK 280 (311)
T ss_dssp CSCEEEEEESCCS-EEEEEEEECSSSEEEEEEEEECSEEEEEEEEETTE
T ss_pred CCcEEEEEECCCC-CceeEEEECCCCEEEEEEECCCCEeEEEEEEECCE
Confidence 3568899999998 4432 22345675 68899999999999997653
No 46
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=61.53 E-value=16 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=35.5
Q ss_pred EEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195 50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
.|.+...+. ....+.+.|.+|.+..+.- .+..+| ..+|+++..|.|.+++.-..
T Consensus 117 ~F~V~t~da----g~g~l~v~V~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~i~V~~~g 172 (191)
T 2k7q_A 117 EFIIDTRDA----GYGGLSLSIEGPSKVDINT-EDLEDGTCRVTYCPTEPGNYIINIKFAD 172 (191)
T ss_dssp EEEEECGGG----CSEEEEEEEEESSCEEEEE-EECTTSCEEEEEEESSCEEEEEEEEETT
T ss_pred EEEEEeCCC----CCCceEEEEECCCCceEEE-EECCCCEEEEEEEeCCCceEEEEEEECC
Confidence 455554432 2456888888998744322 233456 56888999999999988654
No 47
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=61.31 E-value=5.4 Score=27.72 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecCC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKSP 109 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~ 109 (212)
...+.+.|.+|+|..+.-. .+..+|. ..|++.+.|.|++.+.-...
T Consensus 56 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~~~i~V~~~g~ 104 (128)
T 2dib_A 56 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDV 104 (128)
T ss_dssp CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred CccEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 4578899999998644322 2234564 57889999999999986553
No 48
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=59.68 E-value=17 Score=26.96 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|+.+.-. ....+| ...|++.+.|.|.+-+....
T Consensus 30 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~~~G~~~i~V~~~g 77 (191)
T 2k7q_A 30 LSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNG 77 (191)
T ss_dssp SSSEEEEEECTTSCCEECEEEECTTSCEEEECCCSSSEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEccCCEeEEEEEEECC
Confidence 4579999999999765432 223345 46789999999998888765
No 49
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=57.38 E-value=38 Score=23.77 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=42.6
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc------------------ccccceEEEEeccccceeeee
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR------------------DKISEKFEFVAHHKGVHRFCF 104 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~------------------~~~~g~~~f~~~~~G~y~~Cf 104 (212)
++....+.|++.... +....+.+..++|++|..++ ....+.|......+|+|.+-+
T Consensus 13 ~~~~Mag~FEi~~~~------~G~~rfrLka~NGeiI~sSe~Y~sk~~a~~gI~sVk~na~~a~~fE~~~~~~G~~~f~L 86 (130)
T 2k8e_A 13 QGVIMAGWFELSKSS------DNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNL 86 (130)
T ss_dssp -CCCCCCEEEEEECT------TCCEEEEEECTTSCEEEECCCBSSHHHHHHHHHHHHHSSSCTTTEEEEEETTTEEEEEE
T ss_pred ccceeeeeEEEEEcC------CCCEEEEEEeCCCCEEEEcCCcCCHHHHHHHHHHHHhhccccchheeeeccCCCEEEEE
Confidence 444556788887654 45799999999999997532 112346777777788888887
Q ss_pred EecCC
Q 028195 105 TNKSP 109 (212)
Q Consensus 105 ~n~~~ 109 (212)
.....
T Consensus 87 ka~Ng 91 (130)
T 2k8e_A 87 KAANH 91 (130)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 77654
No 50
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=55.79 E-value=39 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Q 028195 158 WLEAQTERQAIVNEAMSRRAVYKA 181 (212)
Q Consensus 158 y~~~re~~~~~~~es~~~rv~~~s 181 (212)
-+......++..+...+++ +||-
T Consensus 44 ~L~~~s~~F~~~A~~l~rk-mwwk 66 (91)
T 3hd7_A 44 ALQAGASQFETSAAKLKRK-YWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333344444444444433 4443
No 51
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=55.70 E-value=24 Score=19.70 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028195 166 QAIVNEAMSRRAVYKAFWESTALVGASV 193 (212)
Q Consensus 166 ~~~~~es~~~rv~~~si~~i~vli~~~~ 193 (212)
|.++.+.--....|.+++-+++++.+++
T Consensus 13 hE~Ty~gFi~~~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 13 QQATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556677777777777777765
No 52
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=54.48 E-value=63 Score=32.39 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=40.5
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc---ccc--eEEEEec---cccceeeeeEec
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK---ISE--KFEFVAH---HKGVHRFCFTNK 107 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~---~~g--~~~f~~~---~~G~y~~Cf~n~ 107 (212)
+|+.|.+..-+.+.+. .+.+..+.+.|.||+|+.+.+..-. ..| .+.|..+ ..|.|++=+...
T Consensus 140 PGqtV~~r~i~~d~~~--~p~~~~v~v~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v~~~ 210 (1661)
T 2b39_A 140 PGSTVLYRVFTVDHKL--LPVGQTVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYYE 210 (1661)
T ss_dssp TTSEEEEEEEEECTTS--CCCCCCEEEEEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEEEET
T ss_pred CCCEEEEEEEEECCCC--cccCceEEEEEECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEEEee
Confidence 4666666655554332 2234578999999999988864322 345 4455554 359999998754
No 53
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=54.35 E-value=20 Score=24.07 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCeEecccccccceEEEEeccccc---eeeeeE
Q 028195 67 VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGV---HRFCFT 105 (212)
Q Consensus 67 i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~---y~~Cf~ 105 (212)
=.+.|+|.+|.++....+...+.-++-+.++|. +++||.
T Consensus 50 ~~lrI~D~~G~vi~~~~~~a~~~~~vLa~~g~n~lGW~Ley~ 91 (106)
T 3fn2_A 50 GYVRITDKDGQVITYEDGSVQDKTVFLTNEGANKLGWKLEFL 91 (106)
T ss_dssp CEEEEECTTSCBCSCCCSCSTTEEEEEEECSCCTTCCEEEEE
T ss_pred CcEEEEcCCCCEEecCCCCcCcceeehhhcCCCccceEEEEE
Confidence 358899999999996666566677887777764 677764
No 54
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=53.62 E-value=60 Score=32.61 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCeEecccccccceEEEEec---cccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~---~~G~y~~Cf~n~~ 108 (212)
+..+.+.|.||+|+.+.++.-...-..+|..+ ..|.|++......
T Consensus 158 ~~~~~v~i~dP~g~~i~~~~~~~~~~~~f~L~~~~~~G~w~I~v~~~~ 205 (1642)
T 3prx_B 158 NKTVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEH 205 (1642)
T ss_dssp CCCEEEEEECSSCCEEEEEEECTTCCCEEECCSSCCCEEEEEEEEETT
T ss_pred CceEEEEEECCCCCEEEEEEecccceEEEEcCCCCCceeEEEEEEeCC
Confidence 45688999999999998754222223344443 4599999998543
No 55
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=52.64 E-value=32 Score=19.97 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028195 166 QAIVNEAMSRRAVYKAFWESTALVGASVL 194 (212)
Q Consensus 166 ~~~~~es~~~rv~~~si~~i~vli~~~~~ 194 (212)
|.++.+.--+...|.+++-++++++++++
T Consensus 21 he~Ty~gFi~~~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 21 QEKTFAGFVRMVTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556777777777777777654
No 56
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.40 E-value=27 Score=18.54 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=17.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
.+++++..++.|...-.++.++...++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356677777777777666666655554
No 57
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.14 E-value=41 Score=20.18 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=34.0
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv 177 (212)
.++++.+...+.++...-.+|-.|.+.+-..-+..-...+++..++
T Consensus 8 D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l 53 (65)
T 1gl2_D 8 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 53 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888777766666666666666554
No 58
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=48.18 E-value=15 Score=29.21 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCeEeccc-ccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFR-DKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~-~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.-.. +..+| ..+|++.+.|.|++|+.-..
T Consensus 130 ~~~l~~~V~~psG~~~~~~v~~~~~g~y~v~f~P~e~G~h~v~V~~~g 177 (288)
T 2j3s_A 130 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG 177 (288)
T ss_dssp CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred cCceEEEEECCCCCeeeeEEEeCCCCEEEEEEecccceeeEEEEEECC
Confidence 34688999999998664322 22344 45788999999999988553
No 59
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=48.03 E-value=61 Score=32.51 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc-ccceEE---EEec---cccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK-ISEKFE---FVAH---HKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~-~~g~~~---f~~~---~~G~y~~Cf~n~~ 108 (212)
+|+.|.+..-+.+.+. .+....+.+.|.||+|+.+.++... ..|-++ |..+ ..|.|++=+....
T Consensus 137 PGqtV~~r~i~~d~~~--~p~~~~v~v~l~dP~G~~i~~~~~~~~~G~~~~~~f~Lp~~~~~G~w~I~v~~~~ 207 (1676)
T 3cu7_A 137 PDQSVKVRVYSLNDDL--KPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKE 207 (1676)
T ss_dssp TTCEECEEEEEECTTC--SCCCCCEEEEEEETTTEECCCEEECCSSSEEECCCEECCSSCCCEEEEEEEEBSS
T ss_pred CCCEEEEEEEEECCCC--cccccceEEEEECCCCCEEEEEeeecCCCceecceeeCCCCccccceEEEEEecC
Confidence 5777776655555432 2234579999999999988876422 345444 4443 4699999998654
No 60
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=47.24 E-value=30 Score=18.10 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
.++++++.++.|...-..+.++...++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356666676666666666666655444
No 61
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=45.34 E-value=1.1e+02 Score=30.22 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCce-EEEEEcCCCCeEeccccc--ccce--EEEEe---ccccceeeeeEecC
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGV-DLVVKGPASDQIHDFRDK--ISEK--FEFVA---HHKGVHRFCFTNKS 108 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i-~~~i~dp~g~~v~~~~~~--~~g~--~~f~~---~~~G~y~~Cf~n~~ 108 (212)
+|+.|.+.--+.+.+ ..+....+ .+.|.||+|+.+.++... ..|- .+|.. +..|.|++-.....
T Consensus 117 Pgq~V~~rv~~~~~~--~~p~~~~~~~v~i~dp~g~~i~~~~~~~~~~G~~~~~f~L~~~~~~G~w~I~~~~~~ 188 (1451)
T 4acq_A 117 PGQTVKFRVVSMDEN--FHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS 188 (1451)
T ss_dssp TTCEEEEEEEEECTT--CCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred CCCEEEEEEEEECCC--CcCccCceeEEEEECCCCCEEEEeeeccCCCCeEEEEeECCCCCCceeEEEEEEecC
Confidence 356655544444332 11223344 589999999999875432 2453 34443 34699999988654
No 62
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=44.45 E-value=58 Score=20.58 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=34.5
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv 177 (212)
.++++.|...+.++...-..|..|.+.+-.--+..-...+++..++
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L 63 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRL 63 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998988888777666666666666665554
No 63
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=42.07 E-value=59 Score=21.75 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=35.7
Q ss_pred EEEEEEEEEECCCCCCCCCCceEEEEEcC-CCCeEecccccccceEEEE--eccccceeeeeEecC
Q 028195 46 TVHASFVVIKADSSWYSSHDGVDLVVKGP-ASDQIHDFRDKISEKFEFV--AHHKGVHRFCFTNKS 108 (212)
Q Consensus 46 ~i~~~y~v~~~~~~~~~~~~~i~~~i~dp-~g~~v~~~~~~~~g~~~f~--~~~~G~y~~Cf~n~~ 108 (212)
.+.++|.-. -..+.+.|.|- +|+++|+.....-...++. .+.+|+|.+=+.-..
T Consensus 35 vlsV~F~~~---------~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~~~~ 91 (101)
T 3sd2_A 35 ILNVSFGRA---------KDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHIILND 91 (101)
T ss_dssp EEEEEESSC---------CSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEEETT
T ss_pred EEEEEeccC---------CCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEEeCC
Confidence 666665432 34699999986 7999998754333344444 455888888776554
No 64
>4div_A ORF48; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=41.77 E-value=1.3e+02 Score=23.99 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=67.5
Q ss_pred EEEEEEEECCCCCCCCCCceEEEEEcC--CCCeE-ec---ccccccceEEEEecc-----ccceeeeeEecC--CC----
Q 028195 48 HASFVVIKADSSWYSSHDGVDLVVKGP--ASDQI-HD---FRDKISEKFEFVAHH-----KGVHRFCFTNKS--PY---- 110 (212)
Q Consensus 48 ~~~y~v~~~~~~~~~~~~~i~~~i~dp--~g~~v-~~---~~~~~~g~~~f~~~~-----~G~y~~Cf~n~~--~~---- 110 (212)
.+...+...+.+|+..+..+.|....| .|..+ .+ .-+..+|.|.|+.+. .|+.+-=|.=.. ..
T Consensus 31 vi~v~IvENG~PyDLTG~tV~Fe~v~p~~~G~~ii~q~v~IvDAknG~f~YTf~~qA~Q~~G~~~AyFSI~k~eg~~~Ie 110 (299)
T 4div_A 31 AIVAQIVENGQPKNFEGLQPFFCLMAQEATGQGVSEESVVSFDAKNGTLKYVASDNALQFVGRNEAYFSFRKQEGGRWIE 110 (299)
T ss_dssp EEEEEEEETTEECCCTTCEEEEEECCCTTTCCCCEEEECSEEETTTTEEEEECCTTTTSSSEEEEEEEEEEEESSSSEEE
T ss_pred EEEEEEeECCEEEcCCCCEEEEEEecCCCCCCeeEeeccEEEeCCCCEEEEEeCHHHHhhcCcEEEEEEEEcCCCCceec
Confidence 344456666666666666777777666 55533 32 234568888888754 355443333222 21
Q ss_pred -ceEEEEEEEEcccCCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028195 111 -HETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRR 176 (212)
Q Consensus 111 -~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~r 176 (212)
.-+-+|++.+..+....++....-+.++++.+..+++-+++.+.+.+ . --+..++++++...-
T Consensus 111 ~~STqdF~y~V~kdi~~~~I~~~sYI~~FEdL~~~~~~yI~e~k~~~e--~-w~es~keil~sIDpg 174 (299)
T 4div_A 111 QFSTRTFHYIVEKSIYSQPFKDSNYWWTFKELYRIFNKYIEDGKKSWE--Q-FVEANREILESIDPG 174 (299)
T ss_dssp EEECCCEEEEEECCSCCCCCBCCCHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHTHHHHHSSSST
T ss_pred ccccccEEEEEEcchhhcCCCccchhhhHHHHHHHHHHHHHHhhHHHH--H-HHHHHHHHHHHhChh
Confidence 13345677665543333333344455566666666666666665544 2 222345555555433
No 65
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=41.59 E-value=84 Score=21.60 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=9.6
Q ss_pred eEEEEeccccceee
Q 028195 89 KFEFVAHHKGVHRF 102 (212)
Q Consensus 89 ~~~f~~~~~G~y~~ 102 (212)
.++++..+.|.|.+
T Consensus 104 t~~~tF~~~G~y~y 117 (132)
T 3c75_A 104 AYAITFNEAGSYDY 117 (132)
T ss_dssp EEEEEECSCEEEEE
T ss_pred EEEEEcCCCEEEEE
Confidence 55666677888765
No 66
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=41.03 E-value=35 Score=27.20 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.-. .+..+| ...|++.+.|.|.+++.-..
T Consensus 142 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~y~i~V~~~g 189 (311)
T 1wlh_A 142 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG 189 (311)
T ss_dssp CCCEEEEEECTTSCBCCCEEEEETTTEEEEEECCCSSEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeeeEEEEECCCCEEEEEEECCCCEEEEEEEEECC
Confidence 4578999999998643321 223456 45888999999999998655
No 67
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=40.54 E-value=37 Score=23.41 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEecCCC---ceEEEEEE
Q 028195 65 DGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPY---HETIDFDV 118 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~---~~~V~f~~ 118 (212)
.+-.|.|++.+|+.+..+. .+|.+.+.--..|.|.+-=...... ...+.|.+
T Consensus 43 ~GA~F~l~~~~g~~v~~~~--sdG~~~~~~L~~G~Y~l~EtkAP~GY~l~~~i~ftV 97 (121)
T 2x5p_A 43 AGATMELRDSSGKTISTWI--SDGQVKDFYLMPGKYTFVETAAPDGYEVATAITFTV 97 (121)
T ss_dssp CCCEEEEECTTSCEEEEEE--CCSSCEEEEECSEEEEEEEEECCTTCCCCCCEEEEE
T ss_pred CCCEEEEEECCCCEEEEEE--eCCEEEEcccCCcEEEEEEEeCCCCcccCCCEEEEE
Confidence 4677999999999886543 4688888888889988865544331 23455554
No 68
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.79 E-value=42 Score=17.61 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++++.++.|...-..+.++...++
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777777777777777777765554
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.39 E-value=46 Score=17.67 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=18.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
.+++++..+..|...-..+.++...++
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777777777777777766655544
No 70
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=38.30 E-value=95 Score=21.28 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=47.0
Q ss_pred CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc---eEEEEeccccceeeeeEecC
Q 028195 32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE---KFEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g---~~~f~~~~~G~y~~Cf~n~~ 108 (212)
....|..+++ ....|.+++.-.. ..++...+++.+++.+.... .+| .-.|.+.++|.|-+.+..-.
T Consensus 37 d~D~y~F~V~-~~g~v~I~l~~~~--------~~~~~w~ly~~~~nyv~y~~--~~gn~~~~~~~~~~pGkYYl~Vy~y~ 105 (121)
T 3jqw_A 37 DQDYFYFDVI-TPGEVKIDINKLG--------YGGATWVVYDENNNAVSYAT--DDGQNLSGKFKADKPGRYYIHLYMFN 105 (121)
T ss_dssp CCEEEEEEES-SCEEEEEEEEECS--------SSEEEEEEECTTSCEEEECE--ECSSEEEEEEEECSCEEEEEEEEEEE
T ss_pred CeeEEEEEeC-CCCeEEEEEEecC--------CCcEEEEEEeCCCCeEEEec--cCCCEEEEEEEeCCCeeEEEEEEEec
Confidence 4789999999 5677777755432 34788889888776665443 233 23566778999999999765
Q ss_pred C
Q 028195 109 P 109 (212)
Q Consensus 109 ~ 109 (212)
.
T Consensus 106 ~ 106 (121)
T 3jqw_A 106 G 106 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 71
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=35.88 E-value=45 Score=24.96 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|+|..+.-. .+..+|. ..|++...|.|.+-+.-..
T Consensus 43 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~~~i~V~~~g 90 (212)
T 1qfh_A 43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG 90 (212)
T ss_dssp CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred CCeEEEEEECCCCCEeeeEEEECCCcEEEEEEECcCcEEEEEEEEECC
Confidence 4578999999998654332 2234564 5788899999999888655
No 72
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=34.95 E-value=79 Score=24.89 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCeEecccccccce--EEEEeccccceeeeeEecC
Q 028195 64 HDGVDLVVKGPASDQIHDFRDKISEK--FEFVAHHKGVHRFCFTNKS 108 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~ 108 (212)
...+.+.|.+|.+..+.- .+..+|. .+|++.+.|.|.+++.-..
T Consensus 227 ~g~l~v~v~gp~~~~~~~-~d~~dGt~~v~y~p~~~G~y~i~V~~~~ 272 (288)
T 2j3s_A 227 AGGLAIAVEGPSKAEISF-EDRKDGSCGVAYVVQEPGDYEVSVKFNE 272 (288)
T ss_dssp SEEEEEEEEESSCEEEEE-EECTTSEEEEEEEESSCEEEEEEEEETT
T ss_pred CCceEEEEeCCCCcceeE-EECCCCEEEEEEEcCCCeeEEEEEEECC
Confidence 457888888887643322 2334564 5788888999999887544
No 73
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.58 E-value=52 Score=18.33 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQFE 155 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~ 155 (212)
+.++.++..|+.+|+.+...
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666544
No 74
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=34.31 E-value=1.2e+02 Score=26.48 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCeEeccccc--ccceEEEEeccccceeeeeEecCCCceEEEEEEEE
Q 028195 64 HDGVDLVVKGPASDQIHDFRDK--ISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHV 120 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~~~--~~g~~~f~~~~~G~y~~Cf~n~~~~~~~V~f~~~~ 120 (212)
..++++++++|+|..+...... ...+..+..+..|+|.+-+.....+ -...|++..
T Consensus 458 ~~dldl~l~~p~G~~~~~~~~~~~~~E~v~~~~~~~G~y~i~V~~~~~s-g~y~~~l~~ 515 (539)
T 3afg_A 458 GSDLDLYLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSGS-ANYQVDVVS 515 (539)
T ss_dssp TCEEEEEEECTTSCEEEEECCSSBSCEEEEEESCCSEEEEEEEEEEESC-EEEEEEEEE
T ss_pred CCCeEEEEECCCCCEeeccccCCCceeEEEECCCCCEEEEEEEEeccCC-ceEEEEEEE
Confidence 3579999999999987653322 1235678888999999999876543 334455543
No 75
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.69 E-value=87 Score=19.58 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=26.9
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 130 AKDEHFNPLLEQISKLEEALYNIQFEQHWLEA 161 (212)
Q Consensus 130 a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~ 161 (212)
|=.|.++-+.+++..|.++..++..|-.++|.
T Consensus 12 AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 12 AVREEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999988888764
No 76
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.25 E-value=95 Score=19.82 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=30.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAV 178 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv~ 178 (212)
+.++.|...+.+|...-.+|-.|.+.+-..-++.-...+++..++-
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~ 74 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRID 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566666677777777777777777766666666666666665543
No 77
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.08 E-value=53 Score=16.55 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028195 137 PLLEQISKLEEALYNIQF 154 (212)
Q Consensus 137 ~l~~~l~~l~~~l~~i~~ 154 (212)
.+++.+++|+..+..+++
T Consensus 3 rlee~~r~l~~ivq~lq~ 20 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQE 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666665555543
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.16 E-value=75 Score=17.96 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 028195 139 LEQISKLEEALYNI 152 (212)
Q Consensus 139 ~~~l~~l~~~l~~i 152 (212)
++.+++|+..++.+
T Consensus 4 Eekv~~Le~~ld~L 17 (46)
T 3swy_A 4 EEKVEQLGSSLDTL 17 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 79
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.02 E-value=70 Score=17.62 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++.....|++++..++++-.++|
T Consensus 13 k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455555566666666666555544
No 80
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=30.51 E-value=89 Score=18.65 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=31.3
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv 177 (212)
+.++.+...+.++...-..|-.|.+.+-..-+..-...+++..++
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l 54 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456677777777777777777777776666666666666666554
No 81
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=29.54 E-value=22 Score=16.63 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.7
Q ss_pred HHHHHHhhhccc
Q 028195 197 YLLRRLFERKLG 208 (212)
Q Consensus 197 ~~lkrfF~~k~~ 208 (212)
..|.|||++++-
T Consensus 8 ~SLqRFleKRk~ 19 (21)
T 3ogl_Q 8 ASLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHHhhc
Confidence 357888888763
No 82
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.37 E-value=70 Score=16.75 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++++.++.|...=..+.++...++
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45666666666665556655554443
No 83
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.28 E-value=70 Score=16.74 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++++.++.+......+.++...++
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667777777666666666654443
No 84
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.58 E-value=71 Score=16.58 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=14.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWL 159 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~ 159 (212)
++++++.++.+...-..+.++...+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556666666666666665554443
No 85
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.32 E-value=1.3e+02 Score=19.42 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 140 EQISKLEEALYNIQFEQHWLEAQTERQAIVN 170 (212)
Q Consensus 140 ~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~ 170 (212)
+.|+.|.+..+++..+..-.+....+.+..+
T Consensus 33 ekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 33 QKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777666554444444444333
No 86
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=27.18 E-value=1.5e+02 Score=20.27 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=26.7
Q ss_pred CcEEEEEEEEEECCCC-----CCCCCCceEEEEEcCCCCeEeccc
Q 028195 44 GDTVHASFVVIKADSS-----WYSSHDGVDLVVKGPASDQIHDFR 83 (212)
Q Consensus 44 ~~~i~~~y~v~~~~~~-----~~~~~~~i~~~i~dp~g~~v~~~~ 83 (212)
+..+.+.+.+...++. | ++....++.|+|++|+.++.+.
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f-~Sgq~~Df~v~d~~G~~VwrwS 60 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQF-STGQKFELVVYDSEHKERYRYS 60 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEE-SSSCCEEEEEECTTCCEEEETT
T ss_pred CCeEEEEEEEEcCCCCcEEEEe-CCCCEEEEEEECCCCCEEEEcc
Confidence 4567777777654431 1 2356789999999999999643
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.18 E-value=73 Score=16.58 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++++.++.|...-..+.++...++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777766666666655444
No 88
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=27.17 E-value=1.1e+02 Score=18.50 Aligned_cols=20 Identities=10% Similarity=0.023 Sum_probs=15.9
Q ss_pred CCceEEEEEcCCCCeEeccc
Q 028195 64 HDGVDLVVKGPASDQIHDFR 83 (212)
Q Consensus 64 ~~~i~~~i~dp~g~~v~~~~ 83 (212)
+....+.+.++||++|.+++
T Consensus 10 ~G~frfrLka~NGevI~sSe 29 (64)
T 3bid_A 10 KGEYRWRLKAANHEIIAQGE 29 (64)
T ss_dssp TSCEEEEEECTTSCEEEECC
T ss_pred CCCEEEEEEeCCCCEEEECC
Confidence 44688999999999988544
No 89
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.85 E-value=75 Score=16.60 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQFEQHW 158 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~~q~y 158 (212)
++++++.+..|...=+++.++...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445555555554444444444433
No 90
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.61 E-value=1e+02 Score=18.04 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhH
Q 028195 137 PLLEQISKLEEALYNIQFEQHWLE---AQTERQAIVNEAMSRRA 177 (212)
Q Consensus 137 ~l~~~l~~l~~~l~~i~~~q~y~~---~re~~~~~~~es~~~rv 177 (212)
.+=..+..|.+.+..++++.+.++ +.|.+-|.-.|.+-.++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888887776655 55666666677666655
No 91
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.69 E-value=1.8e+02 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=17.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 028195 134 HFNPLLEQISKLEEALYNIQFEQ 156 (212)
Q Consensus 134 ~~~~l~~~l~~l~~~l~~i~~~q 156 (212)
.++++++.+..|++.+.+|.+..
T Consensus 7 Rvd~~EErIs~le~rleei~q~e 29 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREG 29 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888886543
No 92
>3gf8_A Putative polysaccharide binding proteins (DUF1812; NP_809975.1, joint center for structural genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.61 E-value=32 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCeEeccccc----ccce--EEEEeccccceee-eeEecC
Q 028195 65 DGVDLVVKGPASDQIHDFRDK----ISEK--FEFVAHHKGVHRF-CFTNKS 108 (212)
Q Consensus 65 ~~i~~~i~dp~g~~v~~~~~~----~~g~--~~f~~~~~G~y~~-Cf~n~~ 108 (212)
..|.+.|+|.+|+.+.+.... ..+. ..++-+ .|.|++ |+-|..
T Consensus 37 ~~V~lyvFD~~G~~v~~~~~~~~~L~~~~y~m~l~Lp-~G~Y~~VaWgg~~ 86 (296)
T 3gf8_A 37 DKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELP-VGQYQFMAWAGAR 86 (296)
T ss_dssp CEEEEEEECTTSBEEEEEEEESGGGGSSCCCEEECCC-SEEEEEEEEESCC
T ss_pred CEEEEEEEcCCCCEEEEEecchhhcccCceEEEEecC-CCcEEEEEEECCC
Confidence 579999999999988864322 1332 334333 478775 444443
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.59 E-value=83 Score=19.44 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=17.5
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 028195 132 DEHFNPLLEQISKLEEALYNIQFEQHWLE 160 (212)
Q Consensus 132 ~e~~~~l~~~l~~l~~~l~~i~~~q~y~~ 160 (212)
++++..|+..+..+......+..+-..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666665555444444
No 94
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=25.08 E-value=1.2e+02 Score=18.24 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhH
Q 028195 137 PLLEQISKLEEALYNIQFEQHWLE---AQTERQAIVNEAMSRRA 177 (212)
Q Consensus 137 ~l~~~l~~l~~~l~~i~~~q~y~~---~re~~~~~~~es~~~rv 177 (212)
.+...+..+.+.+..++++.++++ +.|.+-|...|..-.++
T Consensus 4 SLVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 4 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888877666 45555555565554443
No 95
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=23.80 E-value=96 Score=19.84 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCC-CeEecccccccceEEEEe---------ccccceeeeeEe
Q 028195 64 HDGVDLVVKGPAS-DQIHDFRDKISEKFEFVA---------HHKGVHRFCFTN 106 (212)
Q Consensus 64 ~~~i~~~i~dp~g-~~v~~~~~~~~g~~~f~~---------~~~G~y~~Cf~n 106 (212)
+..|.|.+++-.. -++....-..+|.++|++ +.+|.|-+---+
T Consensus 17 gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~~G~Gd~~v~A~k~G~~g~a~l~ 69 (82)
T 3e8v_A 17 DATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWASKDGRFGYSKLS 69 (82)
T ss_dssp TCEEEEEEEETTEEEEEEEEECCTTSEEEEECCSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEEEEchheeEEEEEEECCCceEEEEEcCCceEEEeccCCEEEEEEec
Confidence 4567777766321 111112223467777777 777776555333
No 96
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=23.76 E-value=55 Score=21.85 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.0
Q ss_pred EEEEcCCCCeEec
Q 028195 69 LVVKGPASDQIHD 81 (212)
Q Consensus 69 ~~i~dp~g~~v~~ 81 (212)
+.+.||+|+.+.-
T Consensus 105 ~~~~DPdGn~iel 117 (128)
T 3g12_A 105 AIVLDPDGHSIEL 117 (128)
T ss_dssp EEEECTTCCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 7888888887653
No 97
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.39 E-value=1.4e+02 Score=18.63 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=8.7
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 028195 135 FNPLLEQISKLEEALYNIQF 154 (212)
Q Consensus 135 ~~~l~~~l~~l~~~l~~i~~ 154 (212)
++.++..|+.|..++..+..
T Consensus 9 v~~LE~sld~LQTrfARLLa 28 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILA 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 98
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=22.83 E-value=1.9e+02 Score=19.77 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=33.8
Q ss_pred EEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccc------------------ccccceEEEEeccccceeeeeEec
Q 028195 49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFR------------------DKISEKFEFVAHHKGVHRFCFTNK 107 (212)
Q Consensus 49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~------------------~~~~g~~~f~~~~~G~y~~Cf~n~ 107 (212)
+.|++.... +....|.+..+||++|..++ .....+|......+|+|.|=+...
T Consensus 3 g~FEi~~~~------~g~~rFrLka~NgeiI~sSe~Y~sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~ 73 (118)
T 2k49_A 3 GWYELSKSS------NDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA 73 (118)
T ss_dssp CEEEEEECT------TSCEEEEEECSSSCEEEECCCBSSHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT
T ss_pred ceEEEEEcC------CCCEEEEEEECCCCEEEECCCcCCHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC
Confidence 457776543 45789999999999997532 112235666666677776644443
No 99
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=22.79 E-value=71 Score=23.40 Aligned_cols=36 Identities=6% Similarity=-0.113 Sum_probs=23.4
Q ss_pred CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEec
Q 028195 43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHD 81 (212)
Q Consensus 43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~ 81 (212)
.|+.+.+.+.+.-... .....+.+.|++..|..++-
T Consensus 68 ~Ge~v~l~i~~~~~~~---i~~~v~G~~Ik~~~G~~I~g 103 (188)
T 2r5o_A 68 GNQQTDFLMKVVFEYD---FDCVVPGILIKTLDGLFLYG 103 (188)
T ss_dssp TTCEEEEEEEEEESSC---EEEEEEEEEEEETTCCEEEE
T ss_pred CCCEEEEEEEEEECCc---CCccEEEEEEECCCCCEEEe
Confidence 4666666655544321 12456778999999998885
No 100
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=22.64 E-value=1e+02 Score=20.46 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.7
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHH
Q 028195 131 KDEHFNPLLEQISKLEEALYNIQFEQ 156 (212)
Q Consensus 131 ~~e~~~~l~~~l~~l~~~l~~i~~~q 156 (212)
..+++++...++++|..+++++.++.
T Consensus 7 ~~~q~~~~~~~~~~l~~~i~~~~~~~ 32 (105)
T 2lme_A 7 SHPQFEKGAHKFRQLDNRLDKLDTRV 32 (105)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888999999888887664
No 101
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.72 E-value=1.3e+02 Score=17.56 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 028195 186 TALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 186 ~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
+++++.-+.-+.+--.||++|+-
T Consensus 22 GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 22 GLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHcCcccCCCC
Confidence 34444445556666689998874
No 102
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.44 E-value=81 Score=15.04 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 028195 140 EQISKLEEALYN 151 (212)
Q Consensus 140 ~~l~~l~~~l~~ 151 (212)
.+++.+.+++..
T Consensus 8 keledlqerlrk 19 (27)
T 3twe_A 8 KELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 103
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.44 E-value=1.3e+02 Score=17.54 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 028195 186 TALVGASVLQVYLLRRLFERKLG 208 (212)
Q Consensus 186 ~vli~~~~~Qv~~lkrfF~~k~~ 208 (212)
++++++-+.-+.+--.||++|+-
T Consensus 19 GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 19 GLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHcCcccCCCc
Confidence 34444444555556689998864
No 104
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.96 E-value=1.4e+02 Score=19.05 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=28.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 028195 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRA 177 (212)
Q Consensus 133 e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~rv 177 (212)
+.++.+...+.+|...-..+-.|.+.+-..-++.-..++++..++
T Consensus 30 ~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl 74 (87)
T 1l4a_D 30 NNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRI 74 (87)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666776666666666666666666654
No 105
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.55 E-value=1e+02 Score=15.95 Aligned_cols=24 Identities=4% Similarity=0.237 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 028195 136 NPLLEQISKLEEALYNIQFEQHWL 159 (212)
Q Consensus 136 ~~l~~~l~~l~~~l~~i~~~q~y~ 159 (212)
+++++.++.|...=..+.++...+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445555555555555555444433
Done!