BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028197
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 91 DKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR 150
+++K FL FKK+K+ +N Y LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VR
Sbjct: 15 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 151 NVANMVPPCESGP-SETNAALEFAVNSVKVS 180
NVAN+VPP + + T AA+E+AV +KVS
Sbjct: 75 NVANLVPPYDQAKYAGTGAAIEYAVLHLKVS 105
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ IAC+DSRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 111 HYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAAL 170
++ +A QAP+++ I CADSRV P+ + PGE F+ RNV N+V + + L
Sbjct: 30 YFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLV---SNKDLNCMSCL 86
Query: 171 EFAVNSVKVS-LLFC 184
E+ V+ +K+ +L C
Sbjct: 87 EYTVDHLKIKHILVC 101
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C+DSR + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 99 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 158
+++++ ++ E + LA+GQ+P+++ I CADSRV + +L GE F+ RN+AN
Sbjct: 45 AWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQ--- 101
Query: 159 CESGPSETNAALEFAVNSVKVS-LLFC 184
C + L++AV +KV +L C
Sbjct: 102 CIHSDISFLSVLQYAVQYLKVKHILVC 128
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 99 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 158
+++++ ++ + + NLA Q P+ + I CADSRV + I+ GE F+ RN+AN
Sbjct: 299 NWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQ--- 355
Query: 159 CESGPSETNAALEFAVNSVKV 179
C + L++AV +KV
Sbjct: 356 CIHSDMSFLSVLQYAVQYLKV 376
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 90 FDKMKHRF---LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEA 146
DK+K F S+ ++ EN +++ LAD Q P ++ I C++SRV + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGEL 60
Query: 147 FIVRNVANMVPPCESGPSETNAALEFAVNSVKV-SLLFC 184
F+ RNVAN V + + +++AV+ +K+ ++ C
Sbjct: 61 FVHRNVANQVIHTDFNCL---SVVQYAVDVLKIEHIIIC 96
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 112 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLV 70
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 112 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLV 70
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 112 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V
Sbjct: 29 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLV 73
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 118 GQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 177
GQAP F+ I CADSRV I+ +PG+ F+ RNVAN P + + A L +A+ +V
Sbjct: 58 GQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED---DSSQALLNYAIMNV 114
Query: 178 KVS 180
V+
Sbjct: 115 GVT 117
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 118 GQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 177
GQAP F+ I CADSRV I+ +PG+ F+ RNVAN P + + A L +A+ +V
Sbjct: 62 GQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED---DSSQALLNYAIMNV 118
Query: 178 KVS 180
V+
Sbjct: 119 GVT 121
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 116 ADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVN 175
A GQ+P + I C+DSR N LG PGE F +NVAN+ C S A LEFA+
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANI---CHSEDLTLKATLEFAII 95
Query: 176 SVKVS 180
+KV+
Sbjct: 96 CLKVN 100
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 96 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANM 155
RF++ + Q ++++H LA GQ P ++ CADSRV I G+ F+VR ++
Sbjct: 25 RFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHV 84
Query: 156 VPPCESGPSETNAALEFAVNSVKVSLLFC 184
+ S ++E+AV + V L+
Sbjct: 85 I------DSAVLGSIEYAVTVLNVPLIVV 107
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 96 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANM 155
RF++ + Q ++++H LA GQ P ++ CADSRV I G+ F+VR ++
Sbjct: 27 RFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHV 86
Query: 156 VPPCESGPSETNAALEFAVNSVKVSLLFC 184
+ S ++E+AV + V L+
Sbjct: 87 I------DSAVLGSIEYAVTVLNVPLIVV 109
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 122 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
+ V+AC D+R+ ++LG Q GEA I+RN ++
Sbjct: 38 RVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI 72
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 122 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVSL 181
+ V+ C D RV LG QP +A I RN +V T+ A+ A S+ +
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIV---------TDDAIRSA--SLTTNF 77
Query: 182 LFCKFIVKVSM----FLRFQG 198
K I+ V+ LRF G
Sbjct: 78 FGTKEIIVVTHTDCGMLRFTG 98
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 122 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
+ V+ C D RV LG QP +A I RN +V
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIV 63
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 111 HYQNLAD-GQAPKFMVIACADSRVCP--SNILGFQPGEAFIVRNVANMV 156
+++L+D +PK +I C DSR+ LG G+A +++N N+V
Sbjct: 14 RFRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV 62
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 125 VIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
++AC D+R+ +LG + GEA ++RN +V
Sbjct: 41 IVACMDARLDVYRMLGIKEGEAHVIRNAGCVV 72
>pdb|3QYF|A Chain A, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
pdb|3QYF|B Chain B, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
Length = 324
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 66 EGITQEFQVDKLETAAE--VENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKF 123
EGI E K ++ E E D FDK+ +R L FK+Q + E Y N G P+
Sbjct: 119 EGIRSELVTVKTISSEENFYEGIVDLFDKVIYRILKFKEQ----DNEVYINATPGLKPES 174
Query: 124 MVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVS 180
+ + A + ++++ ++ E V V PP P + + FA++ +S
Sbjct: 175 IFLTLA-GLLAGADLIYYKYQEFNDV--VILPSPPITIRPKYLDWLIRFAISGYTLS 228
>pdb|3LAS|A Chain A, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
pdb|3LAS|B Chain B, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
Length = 166
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 122 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV 156
+ ++ C DSR+ + LG G+A I+RN V
Sbjct: 32 RVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRV 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,652,960
Number of Sequences: 62578
Number of extensions: 151283
Number of successful extensions: 427
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 26
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)