BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028198
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CON|A Chain A, Solution Structure Of Rsgi Ruh-035, A Zn-Ribbon Module In
Mouse Cdna
Length = 79
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 57 APGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLA--SR 114
+ G +R+ +IL+CH C+ T+++ R+FC CGN TL+KV+VT+ ++G + SR
Sbjct: 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGN-KTLKKVSVTINDDGTLHMHFSR 60
Query: 115 RPRI-TLRGTKFS 126
P++ RG ++S
Sbjct: 61 NPKVLNPRGLRYS 73
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
Length = 272
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 91 CGNGGTLRKVAVTVGENGIVL--------ASRRPRITLRGTKFSLPMPQGGRDAITKNLI 142
GN G + + ++ +G +GI+L A RR + RG FSLP+ GR+
Sbjct: 130 VGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIA--F 187
Query: 143 LREDQLPQKYLYPRNKKKVNKEGDN 167
+R+ + L V + GDN
Sbjct: 188 IRDSGMQLMTLKADGDISVKELGDN 212
>pdb|4FEV|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEX|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
Length = 272
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 4 SSKNNEIVDVSYVDDECS----EQSW--MLRSLSESTVACIT-GDYAMQNVILQMG 52
S NN +VD S DDE + EQ W M + L S + +T GD+++ N+I G
Sbjct: 155 SRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEG 210
>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
pdb|1WSC|B Chain B, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
Length = 230
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 133 GRDAITKNLILREDQLPQKYLYPRNKKKVNKEGDNFVTSDDIFKHHTDKR---------A 183
RD+I L + + L + YL N +NK+G FVT + + + T R A
Sbjct: 24 ARDSIANKLGILKINL-EDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVA 82
Query: 184 PLQPPIRKA--LAVFSGRRNP 202
PL+ + KA A FS R P
Sbjct: 83 PLKEIVSKAAIAAAFSDPRFP 103
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 40 GDYAMQNVILQMG-----LRLLAPGGMQIRQLHRWILKCHACYTI 79
GD A+++ ++++G +RLLAP ++ W +C + I
Sbjct: 189 GDLALEDAVVKLGELRRGIRLLAPDDKDVKYRXDWARRCTDLFGI 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,656,827
Number of Sequences: 62578
Number of extensions: 261890
Number of successful extensions: 558
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 8
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)