BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028198
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
Length = 411
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 12/177 (6%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 231 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 289
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 290 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 347
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 205
L + ++K N ++V F + + + A LQ +R + ++ +GRR N N
Sbjct: 348 LRLSRKARQKTNVFAPDYVAGVSPFVENDISSRSATLQ--VRDS-SLGAGRRRLNPN 401
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
Length = 412
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 12/177 (6%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 291 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 348
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 205
L + ++K N +++ F + + + A LQ +R + + +GRR N N
Sbjct: 349 LRLSQKARQKTNVFAPDYIAGVSPFVENDISSRSATLQ--VRDS-TLGAGRRRLNPN 402
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
Length = 413
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 14/177 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 233 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 291
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 292 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 349
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRR--NPN 203
L + ++K + ++V F + + + A LQ +R + + +GRR NPN
Sbjct: 350 LRLSRKARQKTDVFAPDYVAGVSPFAENDISSRSATLQ--VRDS-TLGAGRRRLNPN 403
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
Length = 412
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 12/177 (6%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ A+ +L EDQ PQ
Sbjct: 291 KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT--EDQRFPQ 348
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 205
L + ++K N +++ F + + + A LQ +R + + +GRR N N
Sbjct: 349 LRLSRKARQKTNVFAPDYIAGVSPFVENDVSSRSATLQ--VRDS-TLGAGRRRLNPN 402
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
Length = 410
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 110/177 (62%), Gaps = 12/177 (6%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 230 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 288
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ A+ +L EDQ PQ
Sbjct: 289 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT--EDQRFPQ 346
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 205
L + ++K N +++ F + + + A LQ +R ++ + +GRR N N
Sbjct: 347 LRLSHKARQKTNVFAPDYIAGVSPFAENDISSRSAILQ--VRDSM-LGAGRRRLNPN 400
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
Length = 403
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%), Gaps = 12/177 (6%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 223 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 281
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 282 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 339
Query: 151 KYLYPRNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 205
L + ++K + +++ F + + + A LQ +R + + +GRR N N
Sbjct: 340 LRLSQKARQKTDVFAPDYIAGVSPFAENDISSRSAILQ--VRDGM-LGAGRRRLNPN 393
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
Length = 388
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
VAC T D++MQNV+LQ+GL L++ G +I+ + R++L+CH CYT+ ++ + FCP CG G
Sbjct: 218 VACATTDFSMQNVLLQIGLNLVSSDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCG-G 276
Query: 95 GTLRKVAVTVGENG--IVLASRRPRITLRGTKFSLPMPQGGRD--AITKNLILREDQLPQ 150
TL K ++ G V + RGTK+SLP P G KN +LREDQ
Sbjct: 277 NTLIKTTCSINSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPEY 336
Query: 151 KYLYPR--NKKKVNKEGDNFVTSDDIFKHHTDKRAPLQPPIRKALAVFSGRRNPND 204
+ R KK+++ ++++ S + T R +Q + +GR+NPN+
Sbjct: 337 QRAVRRMQRKKEIDLMDEDYLPS--LLTGVTKDRMYVQ--------IGAGRKNPNE 382
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
Length = 459
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 20/136 (14%)
Query: 32 ESTVACITGDYAMQNVILQMGLRLLA-PGGMQIRQLHRWILKCHACYTI--TAEIG--RI 86
E+ VA TGD+A+QNV LQM L L+ G++I+++ ++L+CHAC+ I + G +
Sbjct: 262 ENQVALATGDFAVQNVALQMNLNLMNFMSGLKIKRIRNYMLRCHACFKIFPLPKDGKPKH 321
Query: 87 FCPKCGNGGTLRKVAVTV-GENGIVLASRRPRITL--RGTKFSLPMP--------QGGRD 135
FC CG GTL + AV+V G V + RG ++S+ P G +
Sbjct: 322 FCASCGGQGTLLRCAVSVDSRTGNVTPHLKSNFQWNNRGNRYSVASPLSKNSQKRYGKKG 381
Query: 136 AI----TKNLILREDQ 147
+ +N+ILREDQ
Sbjct: 382 HVHSKPQENVILREDQ 397
>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=vapC8 PE=3 SV=1
Length = 166
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHAC-YTITAEIGRIFCPKCGN 93
V +T DYA+QNV + +G+R QI + +W+ C C I +EI CP CG+
Sbjct: 95 VVLVTDDYAIQNVAMSLGIRFDGILHRQISKEFKWVKVCRGCGRRIESEI----CPVCGS 150
Query: 94 GGTLRKV 100
+R+V
Sbjct: 151 EAIIRRV 157
>sp|O27890|VAPC2_METTH Putative ribonuclease VapC2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=vapC2 PE=3 SV=1
Length = 171
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 5 SKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNV--ILQMGLRLLAPGGMQ 62
S++ +I+ +S D E + LR + TV IT DY +QN IL +G R + G
Sbjct: 75 SESGDIMRLSPTDMEVIGLAVSLRGKDDVTV--ITDDYTIQNTLKILGIGFRSVLTSG-- 130
Query: 63 IRQLHRWILKCHAC---YTITAEIGRIFCPKCGN 93
IR + W C C Y + E C CG+
Sbjct: 131 IRDTYSWRRVCTGCRRVYPLDYEFEE--CEICGS 162
>sp|P18644|TSNR_STRAJ rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces azureus
GN=tsnR PE=1 SV=1
Length = 269
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 91 CGNGGTLRKVAVTVGENGIVL--------ASRRPRITLRGTKFSLPMPQGGRDAITKNLI 142
GN G + + ++ +G +GI+L A RR + RG FSLP+ GR+
Sbjct: 127 VGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIA--F 184
Query: 143 LREDQLPQKYLYPRNKKKVNKEGDN 167
+R+ + L V + GDN
Sbjct: 185 IRDSGMQLMTLKADGDISVKELGDN 209
>sp|Q6Q6R3|CRIP3_MOUSE Cysteine-rich protein 3 OS=Mus musculus GN=Crip3 PE=2 SV=1
Length = 243
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 64 RQLHRWILKCHACYTITA------EIGRIFCPKCGNGGTLRKVAVTVGENGIVL-----A 112
+ HR+ LKC C++I + GR +C K G V +G G L
Sbjct: 23 KNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGPRGVNIGGVGCYLYNLPTP 82
Query: 113 SRRPRITLRGTKFSLPMPQGG 133
RI+L + FS P P+ G
Sbjct: 83 PPASRISLSPSNFSPPRPRTG 103
>sp|P57674|VAPC1_THEAC Putative ribonuclease VapC1 OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=vapC1 PE=3 SV=1
Length = 194
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 2 EISSKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGGM 61
E ++K +++++S D + +L + +T DY++QNV + L L
Sbjct: 94 ETAAKTGDLMNLSQTDKD------VLALALQYDATIVTDDYSIQNVASYLNLGFLNANIK 147
Query: 62 QIRQLHRWILKCHACYTITAEIGRIFCPKCGN 93
+I + WI +C C + ++ C CG+
Sbjct: 148 RIDKQIAWIYRCTGCKKVFPGPVKV-CDICGH 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,940,818
Number of Sequences: 539616
Number of extensions: 3383080
Number of successful extensions: 7098
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7072
Number of HSP's gapped (non-prelim): 14
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)