Query 028198
Match_columns 212
No_of_seqs 170 out of 303
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2con_A RUH-035 protein, NIN on 100.0 2.1E-34 7.3E-39 214.7 5.4 75 57-132 2-79 (79)
2 2lcq_A Putative toxin VAPC6; P 99.6 7.3E-17 2.5E-21 131.0 4.2 67 32-101 95-162 (165)
3 3irb_A Uncharacterized protein 96.1 0.0029 1E-07 50.6 3.0 43 66-111 43-85 (145)
4 2gnr_A Conserved hypothetical 95.9 0.0044 1.5E-07 49.8 3.0 41 67-111 44-85 (145)
5 2kdx_A HYPA, hydrogenase/ureas 94.9 0.021 7.2E-07 43.8 3.7 32 66-98 69-102 (119)
6 2aus_D NOP10, ribosome biogene 93.4 0.034 1.2E-06 39.1 2.0 25 69-97 4-28 (60)
7 2apo_B Ribosome biogenesis pro 93.4 0.029 1E-06 39.4 1.6 25 69-97 5-29 (60)
8 1twf_L ABC10-alpha, DNA-direct 92.8 0.04 1.4E-06 39.6 1.7 31 67-98 25-57 (70)
9 4ayb_P DNA-directed RNA polyme 92.2 0.052 1.8E-06 36.7 1.4 30 70-100 3-37 (48)
10 3a43_A HYPD, hydrogenase nicke 92.0 0.11 3.9E-06 41.1 3.5 29 66-94 66-116 (139)
11 3i8o_A KH domain-containing pr 91.8 0.095 3.2E-06 42.2 2.9 29 32-60 104-132 (142)
12 3pwf_A Rubrerythrin; non heme 90.5 0.13 4.4E-06 42.1 2.4 26 67-94 137-162 (170)
13 3ix7_A Uncharacterized protein 89.6 0.12 4.3E-06 41.0 1.7 28 32-59 96-123 (134)
14 6rxn_A Rubredoxin; electron tr 89.2 0.16 5.5E-06 33.7 1.7 24 71-94 5-39 (46)
15 3na7_A HP0958; flagellar bioge 87.2 0.21 7E-06 42.7 1.6 33 51-93 189-230 (256)
16 1yuz_A Nigerythrin; rubrythrin 86.9 0.31 1.1E-05 40.7 2.5 25 70-94 171-195 (202)
17 1lko_A Rubrerythrin all-iron(I 86.5 0.52 1.8E-05 38.8 3.6 27 68-94 153-180 (191)
18 3cng_A Nudix hydrolase; struct 83.6 1.3 4.3E-05 35.0 4.5 56 72-128 5-70 (189)
19 1vk6_A NADH pyrophosphatase; 1 83.4 0.59 2E-05 40.3 2.7 55 71-128 108-169 (269)
20 2jrp_A Putative cytoplasmic pr 83.2 0.66 2.3E-05 34.3 2.5 27 70-100 18-44 (81)
21 3h0g_L DNA-directed RNA polyme 83.1 0.37 1.3E-05 34.0 1.0 30 68-98 19-50 (63)
22 1yk4_A Rubredoxin, RD; electro 82.6 0.75 2.6E-05 31.0 2.4 25 70-94 2-44 (52)
23 1e8j_A Rubredoxin; iron-sulfur 82.3 0.72 2.4E-05 31.1 2.2 25 70-94 3-45 (52)
24 4rxn_A Rubredoxin; electron tr 82.2 0.61 2.1E-05 31.9 1.8 25 70-94 3-45 (54)
25 2gmg_A Hypothetical protein PF 80.8 0.63 2.2E-05 36.0 1.7 34 65-99 62-97 (105)
26 1qxf_A GR2, 30S ribosomal prot 80.8 0.73 2.5E-05 33.0 1.9 25 70-94 7-35 (66)
27 3j20_Y 30S ribosomal protein S 79.7 0.8 2.7E-05 30.6 1.7 9 85-93 37-45 (50)
28 1s24_A Rubredoxin 2; electron 79.3 1 3.5E-05 33.6 2.3 25 70-94 35-77 (87)
29 3bbo_3 Ribosomal protein L33; 78.6 0.94 3.2E-05 32.2 1.9 13 85-98 49-61 (66)
30 2v3b_B Rubredoxin 2, rubredoxi 78.0 1.3 4.3E-05 30.2 2.3 25 70-94 3-45 (55)
31 2kn9_A Rubredoxin; metalloprot 76.6 1.4 4.7E-05 32.5 2.3 25 70-94 27-69 (81)
32 2k4x_A 30S ribosomal protein S 75.9 0.98 3.3E-05 30.7 1.3 10 85-94 18-27 (55)
33 1dx8_A Rubredoxin; electron tr 75.5 1.2 4.3E-05 31.7 1.8 25 70-94 7-49 (70)
34 3iz6_X 40S ribosomal protein S 74.4 2.2 7.6E-05 31.9 3.0 25 70-94 36-64 (86)
35 3v2d_6 50S ribosomal protein L 72.3 1.3 4.3E-05 30.3 1.1 31 68-99 8-50 (54)
36 3j21_g 50S ribosomal protein L 71.8 2.9 0.0001 28.2 2.8 30 67-98 11-40 (51)
37 1m2k_A Silent information regu 71.4 2.6 9E-05 35.7 3.2 27 68-94 119-151 (249)
38 3p8b_A DNA-directed RNA polyme 71.4 2.3 8E-05 31.4 2.4 22 70-94 23-44 (81)
39 1ryq_A DNA-directed RNA polyme 70.8 2.6 8.8E-05 30.2 2.5 22 70-94 11-32 (69)
40 1k81_A EIF-2-beta, probable tr 70.2 1.1 3.8E-05 28.0 0.4 24 58-81 9-32 (36)
41 3r8s_1 50S ribosomal protein L 69.0 1.9 6.4E-05 29.0 1.4 31 68-99 5-47 (50)
42 1ffk_W Ribosomal protein L37AE 67.9 3.1 0.00011 30.1 2.4 20 84-104 26-45 (73)
43 2zjr_1 50S ribosomal protein L 66.0 2.8 9.7E-05 28.6 1.8 31 68-99 9-51 (55)
44 1q14_A HST2 protein; histone d 65.7 2.6 8.7E-05 38.2 2.0 33 68-103 142-186 (361)
45 3j21_i 50S ribosomal protein L 65.4 2.1 7E-05 31.8 1.1 18 84-102 34-51 (83)
46 1ma3_A SIR2-AF2, transcription 64.8 4.1 0.00014 34.6 3.0 26 68-93 121-155 (253)
47 1yc5_A NAD-dependent deacetyla 64.7 2.9 9.9E-05 35.3 2.1 33 68-103 119-160 (246)
48 3ir9_A Peptide chain release f 64.5 6.4 0.00022 31.8 4.0 32 67-100 75-116 (166)
49 1q1a_A HST2 protein; ternary c 63.7 4 0.00014 35.3 2.8 32 68-102 134-177 (289)
50 1gh9_A 8.3 kDa protein (gene M 63.1 3 0.0001 29.9 1.5 24 69-94 3-29 (71)
51 3iz5_m 60S ribosomal protein L 62.8 2.3 7.8E-05 32.1 0.9 19 84-103 35-53 (92)
52 3u31_A SIR2A, transcriptional 62.0 4.7 0.00016 35.4 2.9 26 68-94 152-190 (290)
53 3axs_A Probable N(2),N(2)-dime 60.9 4.6 0.00016 36.7 2.8 28 67-94 241-272 (392)
54 3izc_m 60S ribosomal protein R 59.9 2.7 9.2E-05 31.7 0.9 19 84-103 35-53 (92)
55 2jne_A Hypothetical protein YF 58.1 6.1 0.00021 30.3 2.6 42 71-116 49-95 (101)
56 1h7b_A Anaerobic ribonucleotid 57.9 2.4 8.1E-05 41.1 0.3 25 70-94 540-567 (605)
57 2zjr_Z 50S ribosomal protein L 57.7 4.7 0.00016 27.9 1.7 21 71-93 31-51 (60)
58 3glr_A NAD-dependent deacetyla 57.3 6.3 0.00021 34.6 2.9 27 68-94 137-172 (285)
59 1pft_A TFIIB, PFTFIIBN; N-term 57.3 2.1 7.1E-05 27.7 -0.1 9 85-93 24-32 (50)
60 3ga8_A HTH-type transcriptiona 57.2 8.8 0.0003 26.9 3.2 23 86-109 3-27 (78)
61 3j20_W 30S ribosomal protein S 57.1 5 0.00017 28.3 1.8 26 69-94 14-43 (63)
62 3cc2_Z 50S ribosomal protein L 56.6 3.2 0.00011 32.6 0.8 18 84-102 59-76 (116)
63 1twf_I B12.6, DNA-directed RNA 55.9 3.9 0.00013 31.5 1.2 10 85-94 4-13 (122)
64 1nkw_1 50S ribosomal protein L 55.1 5.6 0.00019 29.4 1.9 31 68-99 36-78 (82)
65 2dok_A Telomerase-binding prot 55.0 6.9 0.00024 31.4 2.6 27 33-59 151-177 (186)
66 4a17_Y RPL37A, 60S ribosomal p 54.5 2.8 9.7E-05 32.2 0.2 18 84-102 35-52 (103)
67 1vq8_1 50S ribosomal protein L 53.8 5.6 0.00019 27.6 1.6 24 71-94 18-42 (57)
68 3f2b_A DNA-directed DNA polyme 53.6 6.3 0.00022 40.6 2.6 28 70-99 502-539 (1041)
69 3u5c_b RP61, YS20, 40S ribosom 53.2 6.7 0.00023 29.0 2.0 26 69-94 33-62 (82)
70 1z60_A TFIIH basal transcripti 51.6 5 0.00017 27.7 1.1 23 72-94 17-39 (59)
71 2xzm_6 RPS27E; ribosome, trans 51.5 6.8 0.00023 28.9 1.8 25 70-94 32-60 (81)
72 3h0g_I DNA-directed RNA polyme 51.2 4.5 0.00016 30.7 0.9 10 85-94 4-13 (113)
73 3jyw_9 60S ribosomal protein L 50.9 1.9 6.6E-05 31.1 -1.2 17 85-102 26-42 (72)
74 3qt1_I DNA-directed RNA polyme 50.0 4.8 0.00016 31.8 0.9 10 85-94 24-33 (133)
75 3m7n_A Putative uncharacterize 49.5 3.5 0.00012 33.4 0.0 35 66-101 136-171 (179)
76 3bvo_A CO-chaperone protein HS 49.3 7.5 0.00026 32.4 2.0 23 71-93 11-35 (207)
77 3iz5_l 60S ribosomal protein L 48.5 7 0.00024 29.6 1.5 25 70-94 16-40 (94)
78 3v2d_5 50S ribosomal protein L 47.6 8.1 0.00028 26.7 1.6 22 70-93 30-51 (60)
79 4a18_A RPL37, ribosomal protei 47.1 6.9 0.00023 29.7 1.3 25 70-94 16-40 (94)
80 2fiy_A Protein FDHE homolog; F 46.2 11 0.00037 33.5 2.6 15 84-98 181-195 (309)
81 3lpe_B DNA-directed RNA polyme 45.2 9.1 0.00031 26.4 1.6 21 71-94 2-22 (59)
82 1dl6_A Transcription factor II 44.9 5.1 0.00017 27.2 0.2 9 85-93 30-38 (58)
83 2zkr_2 60S ribosomal protein L 44.1 9.9 0.00034 28.9 1.7 25 70-94 16-40 (97)
84 3j21_j 50S ribosomal protein L 43.8 8.4 0.00029 29.0 1.3 18 85-103 8-25 (94)
85 1nee_A EIF-2-beta, probable tr 43.4 7.8 0.00027 30.8 1.2 24 57-80 110-133 (138)
86 2kwq_A Protein MCM10 homolog; 43.1 14 0.00046 27.8 2.4 31 71-103 49-82 (92)
87 1l8d_A DNA double-strand break 43.1 6 0.00021 29.1 0.4 9 86-94 48-56 (112)
88 2k2d_A Ring finger and CHY zin 43.0 15 0.00053 26.4 2.6 27 70-96 37-66 (79)
89 3u50_C Telomerase-associated p 42.8 11 0.00037 30.9 2.0 43 68-110 40-88 (172)
90 1j8f_A SIRT2, sirtuin 2, isofo 42.3 16 0.00053 32.4 3.1 33 68-103 157-200 (323)
91 3j21_e 50S ribosomal protein L 41.8 8.9 0.0003 27.0 1.1 23 71-93 18-40 (62)
92 1vq8_3 50S ribosomal protein L 41.8 7.8 0.00027 29.2 0.9 18 85-103 8-25 (92)
93 2ftc_P Mitochondrial ribosomal 41.5 8.6 0.0003 25.8 1.0 31 68-99 9-49 (52)
94 3e20_C Eukaryotic peptide chai 40.6 6.9 0.00024 36.2 0.5 30 65-94 332-372 (441)
95 1s5p_A NAD-dependent deacetyla 39.6 13 0.00045 31.1 2.0 27 68-94 111-143 (235)
96 4a18_C 60S ribosomal protein L 37.9 9.6 0.00033 29.5 0.9 18 85-103 9-26 (109)
97 2fiy_A Protein FDHE homolog; F 37.8 14 0.00047 32.9 1.9 24 70-94 208-231 (309)
98 2hjh_A NAD-dependent histone d 37.5 14 0.00047 33.0 2.0 26 68-93 159-193 (354)
99 3o9x_A Uncharacterized HTH-typ 36.7 24 0.00082 26.0 2.9 11 86-97 3-13 (133)
100 1o4w_A PIN (PILT N-terminus) d 36.5 31 0.001 26.2 3.6 30 33-62 110-139 (147)
101 1vq8_Z 50S ribosomal protein L 35.6 15 0.00051 26.8 1.5 16 85-101 27-42 (83)
102 1r8o_B STI, kunitz trypsin inh 34.1 33 0.0011 24.3 3.1 25 83-110 29-53 (71)
103 1dxg_A Desulforedoxin; non-hem 34.1 27 0.00091 21.3 2.3 20 86-110 7-26 (36)
104 2e9h_A EIF-5, eukaryotic trans 33.7 15 0.00052 29.9 1.4 25 57-81 111-137 (157)
105 2d74_B Translation initiation 33.4 8.8 0.0003 31.0 -0.0 21 58-78 113-133 (148)
106 4esj_A Type-2 restriction enzy 33.0 15 0.00052 32.2 1.4 15 86-101 35-49 (257)
107 3vth_A Hydrogenase maturation 33.0 8 0.00027 38.4 -0.4 23 72-94 163-192 (761)
108 3riy_A NAD-dependent deacetyla 31.9 25 0.00085 30.2 2.6 14 68-81 132-145 (273)
109 2hf1_A Tetraacyldisaccharide-1 31.3 14 0.00047 26.0 0.7 9 86-94 9-17 (68)
110 2nn6_I 3'-5' exoribonuclease C 30.9 12 0.00043 31.0 0.5 31 72-103 171-202 (209)
111 3qqc_A DNA-directed RNA polyme 29.5 46 0.0016 30.8 4.1 36 67-102 2-40 (436)
112 3fac_A Putative uncharacterize 28.9 14 0.00047 27.4 0.4 12 83-94 65-76 (118)
113 2epq_A POZ-, at HOOK-, and zin 27.9 22 0.00075 20.5 1.1 11 71-81 11-21 (45)
114 2jr6_A UPF0434 protein NMA0874 27.7 14 0.00047 26.0 0.2 10 85-94 8-17 (68)
115 1vd4_A Transcription initiatio 27.4 18 0.00061 23.0 0.7 25 70-94 14-48 (62)
116 2js4_A UPF0434 protein BB2007; 27.3 14 0.00047 26.2 0.1 10 85-94 8-17 (70)
117 2g2k_A EIF-5, eukaryotic trans 27.2 19 0.00064 29.7 0.9 23 57-79 104-128 (170)
118 1qyp_A RNA polymerase II; tran 27.2 34 0.0012 22.5 2.1 19 85-104 15-33 (57)
119 2vl6_A SSO MCM N-TER, minichro 26.7 31 0.0011 29.1 2.3 30 65-94 136-177 (268)
120 2jny_A Uncharacterized BCR; st 26.4 14 0.00049 25.9 0.1 10 85-94 10-19 (67)
121 2akl_A PHNA-like protein PA012 26.0 21 0.00071 28.7 1.0 24 71-94 28-53 (138)
122 2a20_A Regulating synaptic mem 25.8 14 0.00047 26.0 -0.1 12 83-94 31-42 (62)
123 4iao_A NAD-dependent histone d 25.8 27 0.00093 33.2 1.9 25 68-92 297-330 (492)
124 1ltl_A DNA replication initiat 25.1 63 0.0022 27.4 3.9 30 65-94 129-165 (279)
125 3cw2_K Translation initiation 24.9 7.2 0.00025 31.1 -1.9 23 72-94 105-133 (139)
126 1x6m_A GFA, glutathione-depend 23.5 24 0.00081 28.8 0.9 12 83-94 96-107 (196)
127 2pk7_A Uncharacterized protein 22.9 16 0.00053 25.8 -0.3 10 85-94 8-17 (69)
128 3p2a_A Thioredoxin 2, putative 22.8 37 0.0013 24.7 1.8 25 70-94 5-34 (148)
129 3flo_B DNA polymerase alpha ca 22.5 37 0.0013 28.5 1.9 36 59-94 11-58 (206)
130 1joc_A EEA1, early endosomal a 22.1 37 0.0013 25.9 1.7 46 40-93 42-93 (125)
131 1dvp_A HRS, hepatocyte growth 21.7 37 0.0013 27.8 1.7 23 71-93 162-185 (220)
132 4g9i_A Hydrogenase maturation 21.7 16 0.00055 36.2 -0.6 24 71-94 157-187 (772)
133 1vfy_A Phosphatidylinositol-3- 21.6 41 0.0014 23.2 1.7 22 72-93 13-35 (73)
134 1tfi_A Transcriptional elongat 21.6 30 0.001 22.7 0.9 10 85-94 9-18 (50)
135 1wff_A Riken cDNA 2810002D23 p 21.5 35 0.0012 25.2 1.3 27 67-94 22-48 (85)
136 2owo_A DNA ligase; protein-DNA 21.3 52 0.0018 32.2 2.9 46 48-94 364-414 (671)
137 3ttc_A HYPF, transcriptional r 21.3 16 0.00056 35.7 -0.6 23 72-94 69-98 (657)
138 1weo_A Cellulose synthase, cat 21.3 16 0.00054 27.6 -0.6 23 72-94 45-67 (93)
139 4bbr_M Transcription initiatio 20.9 25 0.00084 31.3 0.5 24 70-93 21-50 (345)
140 2yw8_A RUN and FYVE domain-con 20.8 43 0.0015 23.6 1.7 23 71-93 20-43 (82)
141 3zyq_A Hepatocyte growth facto 20.5 40 0.0014 28.0 1.7 50 44-93 132-188 (226)
142 2x5c_A Hypothetical protein OR 20.4 1.1E+02 0.0038 23.5 4.0 21 87-110 54-74 (131)
No 1
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=100.00 E-value=2.1e-34 Score=214.70 Aligned_cols=75 Identities=35% Similarity=0.821 Sum_probs=71.3
Q ss_pred cCCCCcceeeeeEEEEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEEeec--CCc-cccccceeccCCCCC
Q 028198 57 APGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLASR--RPR-ITLRGTKFSLPMPQG 132 (212)
Q Consensus 57 s~~g~~I~~~k~wvlrC~aC~k~~~~~~k~FCp~CG~~~TL~Rvsvsv~~~G~~~~~~--k~~-~n~RG~~ySlPkpkg 132 (212)
+++|++|+++++|+|||||||+++.+|+++|||+|||+ ||+||+|+||+||++++|. +++ ||+||++||||+|+|
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~-TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPkpkG 79 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNK-TLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGPSSG 79 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEESCSSCCSCSSSCCS-CCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCceEeeeeeeeeeEecccceECCCcccccccccCcc-cceEEEEEECCCCcEEEeccCCccccccCCCCccCCCCCC
Confidence 68999999999999999999999999999999999998 9999999999999987765 578 999999999999997
No 2
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.64 E-value=7.3e-17 Score=130.98 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=60.0
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCCCCcceeeeeEEEEccCccccccccC-ccccCCCCCCCceeEEE
Q 028198 32 ESTVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIG-RIFCPKCGNGGTLRKVA 101 (212)
Q Consensus 32 ~~~vac~TdDfAmQNVllqmGL~~~s~~g~~I~~~k~wvlrC~aC~k~~~~~~-k~FCp~CG~~~TL~Rvs 101 (212)
+..+.++|+||++|||+.++||+++++. .+|++++.|.|+|.+|++.|.... ..|||.||++ ++|+.
T Consensus 95 ~l~~~lvT~D~~l~~vA~~~Gv~v~~~~-~~i~~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~--~~~~~ 162 (165)
T 2lcq_A 95 ELKGEIFSDDYNVQNIASLLGLRFRTLK-RGIKKVIKWRYVCIGCGRKFSTLPPGGVCPDCGSK--VKLIP 162 (165)
T ss_dssp HHTCCEECCCHHHHHHHHHTTCCEECCS-CCCSSCCCCCEEESSSCCEESSCCGGGBCTTTCCB--EEECC
T ss_pred HhCCeEEcCcHHHHHHHHHCCCeEEchh-hhccccccEEEECCCCCCcccCCCCCCcCCCCCCc--ceeCC
Confidence 5677999999999999999999999998 889999999999999999998543 5799999997 77653
No 3
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=96.13 E-value=0.0029 Score=50.62 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=31.7
Q ss_pred eeeEEEEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEE
Q 028198 66 LHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVL 111 (212)
Q Consensus 66 ~k~wvlrC~aC~k~~~~~~k~FCp~CG~~~TL~Rvsvsv~~~G~~~ 111 (212)
-+-...||..|++++.. .+.+||.||+. .+.-+.++ ...|++.
T Consensus 43 grL~~~rC~~CG~~~~P-Pr~~Cp~C~s~-~~~~ve~s-~G~GtV~ 85 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVEIN-KDEAYVD 85 (145)
T ss_dssp TCCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEECC-GGGCEEE
T ss_pred CeEEEEEeCCCCcEEcC-chhhCcCCCCC-ceeeeeec-CCceEEE
Confidence 35678899999999876 47899999997 77766532 1246653
No 4
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=95.88 E-value=0.0044 Score=49.81 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=31.6
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCceeEEEEEeC-CCceEE
Q 028198 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVG-ENGIVL 111 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~~~k~FCp~CG~~~TL~Rvsvsv~-~~G~~~ 111 (212)
+-...||..|++++.. .+.+||.||+. .+.-+. +. ..|++.
T Consensus 44 ~L~~~rC~~CG~~~fP-Pr~~Cp~C~s~-~~e~v~--ls~g~GtV~ 85 (145)
T 2gnr_A 44 KIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVE--INKDEAYVD 85 (145)
T ss_dssp CCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEE--CCGGGCEEE
T ss_pred EEEEEEECCCCcEEeC-CCCCCCCCCCC-ccEEEE--ccCCcEEEE
Confidence 4667899999998865 47899999997 777666 34 457763
No 5
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=94.88 E-value=0.021 Score=43.82 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=23.5
Q ss_pred eeeEEEEccCccccccccC-cc-ccCCCCCCCcee
Q 028198 66 LHRWILKCHACYTITAEIG-RI-FCPKCGNGGTLR 98 (212)
Q Consensus 66 ~k~wvlrC~aC~k~~~~~~-k~-FCp~CG~~~TL~ 98 (212)
...-.++|..|+..+.... .. .||.||++ .++
T Consensus 69 ~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~-~~~ 102 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNALDYGVCEKCHSK-NVI 102 (119)
T ss_dssp EECCEEECSSSSCEECSCCSTTCCCSSSSSC-CCE
T ss_pred eccceEEcCCCCCEEeCCCCCCCcCccccCC-CcE
Confidence 3445799999999886533 34 59999997 444
No 6
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=93.41 E-value=0.034 Score=39.15 Aligned_cols=25 Identities=40% Similarity=0.731 Sum_probs=20.1
Q ss_pred EEEEccCccccccccCccccCCCCCCCce
Q 028198 69 WILKCHACYTITAEIGRIFCPKCGNGGTL 97 (212)
Q Consensus 69 wvlrC~aC~k~~~~~~k~FCp~CG~~~TL 97 (212)
-+.+|.+|+..|- +..||.||.+ |.
T Consensus 4 ~mr~C~~Cg~YTL---k~~CP~CG~~-t~ 28 (60)
T 2aus_D 4 RIRKCPKCGRYTL---KETCPVCGEK-TK 28 (60)
T ss_dssp CCEECTTTCCEES---SSBCTTTCSB-CE
T ss_pred cceECCCCCCEEc---cccCcCCCCc-cC
Confidence 3568999998775 5789999998 54
No 7
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=93.37 E-value=0.029 Score=39.44 Aligned_cols=25 Identities=40% Similarity=0.857 Sum_probs=20.0
Q ss_pred EEEEccCccccccccCccccCCCCCCCce
Q 028198 69 WILKCHACYTITAEIGRIFCPKCGNGGTL 97 (212)
Q Consensus 69 wvlrC~aC~k~~~~~~k~FCp~CG~~~TL 97 (212)
-+.+|..|+..|- +..||.||.+ |.
T Consensus 5 ~mr~C~~CgvYTL---k~~CP~CG~~-T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYTL---KEICPKCGEK-TV 29 (60)
T ss_dssp CCEECTTTCCEES---SSBCSSSCSB-CB
T ss_pred hceeCCCCCCEec---cccCcCCCCc-CC
Confidence 3568999998775 5789999998 54
No 8
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=92.83 E-value=0.04 Score=39.59 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=24.0
Q ss_pred eeEEEEccCccccccc--cCccccCCCCCCCcee
Q 028198 67 HRWILKCHACYTITAE--IGRIFCPKCGNGGTLR 98 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~--~~k~FCp~CG~~~TL~ 98 (212)
....|.|..|+..+.. .....||.||++ .|-
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~R-ILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHR-ILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCC-CCB
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCce-EeE
Confidence 4678999999988543 346799999997 553
No 9
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=92.15 E-value=0.052 Score=36.68 Aligned_cols=30 Identities=23% Similarity=0.727 Sum_probs=21.8
Q ss_pred EEEccCccccccc-----cCccccCCCCCCCceeEE
Q 028198 70 ILKCHACYTITAE-----IGRIFCPKCGNGGTLRKV 100 (212)
Q Consensus 70 vlrC~aC~k~~~~-----~~k~FCp~CG~~~TL~Rv 100 (212)
+|+|-.|+++++. ++-.-||.||.+ -+.+|
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr-ii~Kv 37 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK-IIFMV 37 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCS-CEECC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcE-EEEEe
Confidence 5899999998864 345779999998 55544
No 10
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=91.98 E-value=0.11 Score=41.12 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=21.6
Q ss_pred eeeEEEEccCccccccccC----------------------ccccCCCCCC
Q 028198 66 LHRWILKCHACYTITAEIG----------------------RIFCPKCGNG 94 (212)
Q Consensus 66 ~k~wvlrC~aC~k~~~~~~----------------------k~FCp~CG~~ 94 (212)
...=+.+|..|+.++.... ..-||.||++
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 3445789999998876432 3559999998
No 11
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=91.82 E-value=0.095 Score=42.24 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.2
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCCC
Q 028198 32 ESTVACITGDYAMQNVILQMGLRLLAPGG 60 (212)
Q Consensus 32 ~~~vac~TdDfAmQNVllqmGL~~~s~~g 60 (212)
+..+.++|+||.+++||..+|+.++.+..
T Consensus 104 ~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 104 ETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 56789999999999999999999988764
No 12
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=90.46 E-value=0.13 Score=42.13 Aligned_cols=26 Identities=23% Similarity=0.660 Sum_probs=19.9
Q ss_pred eeEEEEccCccccccccCccccCCCCCC
Q 028198 67 HRWILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
..| +|.-|+-++..-.-..||.||.+
T Consensus 137 ~~~--~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVY--ICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp CEE--ECTTTCCEEESCCCSBCTTTCCB
T ss_pred Cee--EeCCCCCeeCCCCCCCCCCCCCC
Confidence 455 49999999865344689999975
No 13
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=89.60 E-value=0.12 Score=41.01 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.1
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCC
Q 028198 32 ESTVACITGDYAMQNVILQMGLRLLAPG 59 (212)
Q Consensus 32 ~~~vac~TdDfAmQNVllqmGL~~~s~~ 59 (212)
+..+.++|.||.|++|+..+|+.++.++
T Consensus 96 ~~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 96 DLEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred HhCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 5678999999999999999999998653
No 14
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=89.18 E-value=0.16 Score=33.73 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=18.1
Q ss_pred EEccCccccccc----------cC-ccccCCCCCC
Q 028198 71 LKCHACYTITAE----------IG-RIFCPKCGNG 94 (212)
Q Consensus 71 lrC~aC~k~~~~----------~~-k~FCp~CG~~ 94 (212)
++|..|+-++.+ .. .-.||.||..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 599999999863 11 1279999975
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.20 E-value=0.21 Score=42.72 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=23.1
Q ss_pred hCceeecCCCCcceeeeeEEEEccCccccccc---------cCccccCCCCC
Q 028198 51 MGLRLLAPGGMQIRQLHRWILKCHACYTITAE---------IGRIFCPKCGN 93 (212)
Q Consensus 51 mGL~~~s~~g~~I~~~k~wvlrC~aC~k~~~~---------~~k~FCp~CG~ 93 (212)
-|+-++++.+. +|.|||-.-++ -...+||+||-
T Consensus 189 ~g~avv~v~~~----------~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgR 230 (256)
T 3na7_A 189 KNTSIVTIKKQ----------ACGGCFIRLNDKIYTEVLTSGDMITCPYCGR 230 (256)
T ss_dssp GGGSEEECBTT----------BCTTTCCBCCHHHHHHHHHSSSCEECTTTCC
T ss_pred CCceEEEeeCC----------ccCCCCeeeCHHHHHHHHCCCCEEECCCCCe
Confidence 46667666543 89999965442 13579999996
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=86.90 E-value=0.31 Score=40.71 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
+++|.-|+-++....-..||.||.+
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 6789999999864334689999985
No 17
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=86.45 E-value=0.52 Score=38.79 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=20.1
Q ss_pred eEEEEccCccccccc-cCccccCCCCCC
Q 028198 68 RWILKCHACYTITAE-IGRIFCPKCGNG 94 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~-~~k~FCp~CG~~ 94 (212)
.=+++|.-|+.++.. ..-..||.||.+
T Consensus 153 ~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred CceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 336889999999852 123489999986
No 18
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=83.58 E-value=1.3 Score=35.05 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=32.3
Q ss_pred EccCccccccc-------cCccccCCCCCC---CceeEEEEEeCCCceEEeecCCccccccceeccC
Q 028198 72 KCHACYTITAE-------IGRIFCPKCGNG---GTLRKVAVTVGENGIVLASRRPRITLRGTKFSLP 128 (212)
Q Consensus 72 rC~aC~k~~~~-------~~k~FCp~CG~~---~TL~Rvsvsv~~~G~~~~~~k~~~n~RG~~ySlP 128 (212)
.|..|+..... ..+.+|+.||.. ....-|.+-+..+|.+++.++...... ..|.+|
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~-g~w~lP 70 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYR-GKWTLP 70 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSST-TCEECS
T ss_pred cCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCC-CeEECc
Confidence 59999976531 236789999921 012234444445788776655432223 358887
No 19
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=83.37 E-value=0.59 Score=40.31 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=34.3
Q ss_pred EEccCcccccc---ccCccccCCCCCCCceeE----EEEEeCCCceEEeecCCccccccceeccC
Q 028198 71 LKCHACYTITA---EIGRIFCPKCGNGGTLRK----VAVTVGENGIVLASRRPRITLRGTKFSLP 128 (212)
Q Consensus 71 lrC~aC~k~~~---~~~k~FCp~CG~~~TL~R----vsvsv~~~G~~~~~~k~~~n~RG~~ySlP 128 (212)
..|..|+..+. ...+..||.||.. ..-+ |.+-+..+|.+++.+++.+. ...|++|
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~-~yp~~~~~viv~v~~~~~vLL~rr~~~~--~g~w~lP 169 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRER-YYPQIAPCIIVAIRRDDSILLAQHTRHR--NGVHTVL 169 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCE-ECCCCEEEEEEEEEETTEEEEEEETTTC--SSCCBCE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCE-ecCCCCcEEEEEEEeCCEEEEEEecCCC--CCcEECC
Confidence 46899986652 2336789999974 3322 33335667888776655432 3468885
No 20
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.19 E-value=0.66 Score=34.29 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=21.5
Q ss_pred EEEccCccccccccCccccCCCCCCCceeEE
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNGGTLRKV 100 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~~TL~Rv 100 (212)
...|..|.+.+... -|||.||.+ |.+.
T Consensus 18 ~~~C~~C~~~~~~~--afCPeCgq~--Le~l 44 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ--ALCPDCRQP--LQVL 44 (81)
T ss_dssp EEECTTTCCEEEEE--EECSSSCSC--CCEE
T ss_pred ceECccccccCCCc--ccCcchhhH--HHHH
Confidence 45699999988765 399999998 6554
No 21
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.07 E-value=0.37 Score=34.04 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=22.7
Q ss_pred eEEEEccCcccccccc--CccccCCCCCCCcee
Q 028198 68 RWILKCHACYTITAEI--GRIFCPKCGNGGTLR 98 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~--~k~FCp~CG~~~TL~ 98 (212)
.-.|+|..|+.....- ...-||.||++ .|-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R-ILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHR-VMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCC-CCB
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcE-EEE
Confidence 3469999999877532 35789999998 664
No 22
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=82.56 E-value=0.75 Score=31.01 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=18.7
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 028198 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~-----------------~-k~FCp~CG~~ 94 (212)
+++|..|+-+|... . .-.||.||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 47999999998641 1 1269999975
No 23
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=82.34 E-value=0.72 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEccCccccccccC------------------ccccCCCCCC
Q 028198 70 ILKCHACYTITAEIG------------------RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~------------------k~FCp~CG~~ 94 (212)
+++|..|+-+|.... .-.||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 378999999986311 1269999975
No 24
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=82.17 E-value=0.61 Score=31.86 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=18.4
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 028198 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~-----------------~-k~FCp~CG~~ 94 (212)
+++|..|+-+|... . .-.||.||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 36999999998641 1 1269999975
No 25
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=80.79 E-value=0.63 Score=35.96 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.9
Q ss_pred eeeeEEEEccCcccccc-ccC-ccccCCCCCCCceeE
Q 028198 65 QLHRWILKCHACYTITA-EIG-RIFCPKCGNGGTLRK 99 (212)
Q Consensus 65 ~~k~wvlrC~aC~k~~~-~~~-k~FCp~CG~~~TL~R 99 (212)
++..+-++|..|+..|. ... ...||.|++. .+..
T Consensus 62 ~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe-~Ie~ 97 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFKAEINIPSRCPKCKSE-WIEE 97 (105)
T ss_dssp EEEECCCBBTTTCCBCCCCSSCCSSCSSSCCC-CBCC
T ss_pred EEEEECcChhhCcCeecccCCCCCCCcCCCCC-ccCC
Confidence 67788899999999882 222 3789999997 6543
No 26
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=80.77 E-value=0.73 Score=32.97 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=17.9
Q ss_pred EEEccCccccccc----cCccccCCCCCC
Q 028198 70 ILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
..+|++|+++.-. .+...|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCE
Confidence 4689999977532 336789999974
No 27
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.68 E-value=0.8 Score=30.60 Aligned_cols=9 Identities=56% Similarity=1.125 Sum_probs=4.5
Q ss_pred ccccCCCCC
Q 028198 85 RIFCPKCGN 93 (212)
Q Consensus 85 k~FCp~CG~ 93 (212)
+..|++||.
T Consensus 37 R~~C~kCG~ 45 (50)
T 3j20_Y 37 RWACGKCGY 45 (50)
T ss_dssp EEECSSSCC
T ss_pred eEECCCCCC
Confidence 445555553
No 28
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=79.31 E-value=1 Score=33.65 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.8
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 028198 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~-----------------~-k~FCp~CG~~ 94 (212)
+++|..|+-+|... . .-.||.||..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 58999999998641 1 1269999975
No 29
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=78.62 E-value=0.94 Score=32.18 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=11.1
Q ss_pred ccccCCCCCCCcee
Q 028198 85 RIFCPKCGNGGTLR 98 (212)
Q Consensus 85 k~FCp~CG~~~TL~ 98 (212)
+.|||.|... ||-
T Consensus 49 kKycp~c~kH-tlh 61 (66)
T 3bbo_3 49 RKFCPYCYKH-TIH 61 (66)
T ss_dssp CCCCCSSSSC-CCC
T ss_pred EccCCCCCCe-eeE
Confidence 5799999997 874
No 30
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=78.01 E-value=1.3 Score=30.21 Aligned_cols=25 Identities=40% Similarity=0.820 Sum_probs=18.8
Q ss_pred EEEccCccccccc-----------------cC-ccccCCCCCC
Q 028198 70 ILKCHACYTITAE-----------------IG-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~-----------------~~-k~FCp~CG~~ 94 (212)
+++|..|+-+|.. .. .-.||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4799999999864 11 1279999975
No 31
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=76.62 E-value=1.4 Score=32.53 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=19.0
Q ss_pred EEEccCccccccc-----------------cC-ccccCCCCCC
Q 028198 70 ILKCHACYTITAE-----------------IG-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~-----------------~~-k~FCp~CG~~ 94 (212)
+++|..|+-+|.. .. .-.||.||.+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5889999999874 11 1269999975
No 32
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=75.93 E-value=0.98 Score=30.73 Aligned_cols=10 Identities=60% Similarity=1.690 Sum_probs=6.5
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
..|||.||+.
T Consensus 18 ~~fCPkCG~~ 27 (55)
T 2k4x_A 18 HRFCPRCGPG 27 (55)
T ss_dssp SCCCTTTTTT
T ss_pred cccCcCCCCc
Confidence 3677777764
No 33
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=75.49 E-value=1.2 Score=31.68 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=18.7
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 028198 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~-----------------~-k~FCp~CG~~ 94 (212)
+++|..|+-+|... . .-.||.||..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 47899999998731 1 1269999976
No 34
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=74.44 E-value=2.2 Score=31.88 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=18.1
Q ss_pred EEEccCccccccc----cCccccCCCCCC
Q 028198 70 ILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
..+|.+|+.++.. .+...|..||.-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 3689999977632 346789999974
No 35
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=72.26 E-value=1.3 Score=30.32 Aligned_cols=31 Identities=29% Similarity=0.738 Sum_probs=21.5
Q ss_pred eEEEEccCcccc-cc---c-------c-CccccCCCCCCCceeE
Q 028198 68 RWILKCHACYTI-TA---E-------I-GRIFCPKCGNGGTLRK 99 (212)
Q Consensus 68 ~wvlrC~aC~k~-~~---~-------~-~k~FCp~CG~~~TL~R 99 (212)
.-.|.|.+|... |. . + -+.|||.|+.. ||-+
T Consensus 8 ~I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kH-tlhk 50 (54)
T 3v2d_6 8 KLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH-TVHR 50 (54)
T ss_dssp EEEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEE-EEEE
T ss_pred eEEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCE-eeEE
Confidence 457999999632 21 0 1 16899999997 8754
No 36
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.81 E-value=2.9 Score=28.23 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=22.1
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCcee
Q 028198 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLR 98 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~~~k~FCp~CG~~~TL~ 98 (212)
..=.+.|+-|+..-+ .....|.+||+. .|+
T Consensus 11 ~~~k~iCpkC~a~~~-~gaw~CrKCG~~-~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNP-WGAKKCRKCGYK-RLR 40 (51)
T ss_dssp SSSEEECTTTCCEEC-TTCSSCSSSSSC-CCE
T ss_pred HhCCccCCCCCCcCC-CCceecCCCCCc-ccc
Confidence 344678999997743 346889999996 564
No 37
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=71.42 E-value=2.6 Score=35.74 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=19.4
Q ss_pred eEEEEccCcccccccc------CccccCCCCCC
Q 028198 68 RWILKCHACYTITAEI------GRIFCPKCGNG 94 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~------~k~FCp~CG~~ 94 (212)
-+..+|..|.+.+... ....||.||..
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~ 151 (249)
T 1m2k_A 119 LRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSL 151 (249)
T ss_dssp EEEEEESSSSCEEECSSCCCSSSCCBCSSSSSB
T ss_pred cceeEeCCCCCcccchhhccCCCCCCCCCCCCC
Confidence 5668899999876421 12479999974
No 38
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=71.41 E-value=2.3 Score=31.41 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=17.9
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
...|..|..+... +.||.||+.
T Consensus 23 ~rAC~~C~~v~~~---d~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSE---DRCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESS---SSCTTTCCC
T ss_pred HHHHhhCCCccCC---CCCCCCCCC
Confidence 3479999999754 479999996
No 39
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=70.84 E-value=2.6 Score=30.25 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=18.2
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
...|.-|..+. ..+.||.||+.
T Consensus 11 ~~AC~~C~~~~---~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT---SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE---SSSSCTTTCCC
T ss_pred hhhHHhCCccc---cCCcCCCccCC
Confidence 46899999988 34789999985
No 40
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=70.16 E-value=1.1 Score=27.99 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=17.6
Q ss_pred CCCCcceeeeeEEEEccCcccccc
Q 028198 58 PGGMQIRQLHRWILKCHACYTITA 81 (212)
Q Consensus 58 ~~g~~I~~~k~wvlrC~aC~k~~~ 81 (212)
++...+++-+.|.++|.||+...+
T Consensus 9 peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 9 PDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCcEEEEeCCcEEEEhhcCCCccc
Confidence 344456667899999999997654
No 41
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=68.97 E-value=1.9 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=21.0
Q ss_pred eEEEEccCcccc-c---c-------ccC-ccccCCCCCCCceeE
Q 028198 68 RWILKCHACYTI-T---A-------EIG-RIFCPKCGNGGTLRK 99 (212)
Q Consensus 68 ~wvlrC~aC~k~-~---~-------~~~-k~FCp~CG~~~TL~R 99 (212)
.-.|.|.+|... | . -+. +.|||.|+.. ||-+
T Consensus 5 ~I~L~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~kh-tlhk 47 (50)
T 3r8s_1 5 KIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH-VIYK 47 (50)
T ss_dssp EEEEEESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEE-EEEE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCE-eeEE
Confidence 457999999532 2 1 012 6899999987 7754
No 42
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=67.90 E-value=3.1 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=16.3
Q ss_pred CccccCCCCCCCceeEEEEEe
Q 028198 84 GRIFCPKCGNGGTLRKVAVTV 104 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsvsv 104 (212)
.+.+||.||.. .++|+++-+
T Consensus 26 ~ky~C~fCgk~-~vkR~a~GI 45 (73)
T 1ffk_W 26 KKYKCPVCGFP-KLKRASTSI 45 (73)
T ss_pred cCccCCCCCCc-eeEEEEeEE
Confidence 36789999986 899998754
No 43
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=65.98 E-value=2.8 Score=28.57 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=21.1
Q ss_pred eEEEEccCccccc----cc-------c-CccccCCCCCCCceeE
Q 028198 68 RWILKCHACYTIT----AE-------I-GRIFCPKCGNGGTLRK 99 (212)
Q Consensus 68 ~wvlrC~aC~k~~----~~-------~-~k~FCp~CG~~~TL~R 99 (212)
.-.|.|.+|.... .. + -+.|||.|... ||-+
T Consensus 9 ~I~L~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kH-tlhk 51 (55)
T 2zjr_1 9 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 51 (55)
T ss_pred EEEEEEcccCCeeEeEcccCCCCCcceEEEccCCCCCCE-EeEE
Confidence 5579999996421 11 1 15799999997 8754
No 44
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=65.69 E-value=2.6 Score=38.25 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEccCccccccc------cC------ccccCCCCCCCceeEEEEE
Q 028198 68 RWILKCHACYTITAE------IG------RIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~------~~------k~FCp~CG~~~TL~Rvsvs 103 (212)
-+..+|..|.+.+.. +. ...||.||.. | |-.|.
T Consensus 142 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~--l-rP~VV 186 (361)
T 1q14_A 142 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL--V-KPAIV 186 (361)
T ss_dssp EEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB--E-EEEEC
T ss_pred ccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE--e-CCCcc
Confidence 567899999987653 10 1479999974 4 45543
No 45
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.43 E-value=2.1 Score=31.77 Aligned_cols=18 Identities=22% Similarity=0.815 Sum_probs=15.1
Q ss_pred CccccCCCCCCCceeEEEE
Q 028198 84 GRIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsv 102 (212)
.+..||.||.. .++|+++
T Consensus 34 ~ky~CpfCGk~-~vkR~a~ 51 (83)
T 3j21_i 34 QKHTCPVCGRK-AVKRIST 51 (83)
T ss_dssp SCBCCSSSCSS-CEEEEET
T ss_pred cccCCCCCCCc-eeEecCc
Confidence 36789999997 8999884
No 46
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=64.84 E-value=4.1 Score=34.64 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.9
Q ss_pred eEEEEccCcccccccc---------CccccCCCCC
Q 028198 68 RWILKCHACYTITAEI---------GRIFCPKCGN 93 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~---------~k~FCp~CG~ 93 (212)
-+..+|..|.+.++.. ....||.||.
T Consensus 121 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 121 MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EEEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred cCeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 5668999999876421 1247999998
No 47
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=64.69 E-value=2.9 Score=35.35 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=22.1
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCCCceeEEEEE
Q 028198 68 RWILKCHACYTITAEI---------GRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~---------~k~FCp~CG~~~TL~Rvsvs 103 (212)
-+..+|..|.+.++.. ....||.||.. | |-.|.
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~--l-rP~vv 160 (246)
T 1yc5_A 119 VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL--I-RPNIV 160 (246)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB--E-EEEEC
T ss_pred cceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc--c-CcceE
Confidence 5678999999876420 13479999974 4 44443
No 48
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=64.46 E-value=6.4 Score=31.77 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=21.1
Q ss_pred eeEEEEccCccccc----------cccCccccCCCCCCCceeEE
Q 028198 67 HRWILKCHACYTIT----------AEIGRIFCPKCGNGGTLRKV 100 (212)
Q Consensus 67 k~wvlrC~aC~k~~----------~~~~k~FCp~CG~~~TL~Rv 100 (212)
.+|+++|+.|.... .......||.||.. |.-+
T Consensus 75 ~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~--~~~~ 116 (166)
T 3ir9_A 75 ERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS--LEVT 116 (166)
T ss_dssp EEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB--EEEE
T ss_pred eEEEEECCCCCceeEEEeecChhhcccccccccccCcc--chhh
Confidence 47889999998432 01123579999986 5433
No 49
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=63.75 E-value=4 Score=35.34 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=22.0
Q ss_pred eEEEEccCccccccc------c------CccccCCCCCCCceeEEEE
Q 028198 68 RWILKCHACYTITAE------I------GRIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~------~------~k~FCp~CG~~~TL~Rvsv 102 (212)
-+..+|..|.+.+.. + ....||.||.. | |-.|
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~--l-rP~v 177 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL--V-KPAI 177 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB--E-EEEE
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE--E-CCCE
Confidence 567899999987652 1 12479999974 4 4554
No 50
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=63.14 E-value=3 Score=29.89 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=16.5
Q ss_pred EEEEccCcccccc--c-cCccccCCCCCC
Q 028198 69 WILKCHACYTITA--E-IGRIFCPKCGNG 94 (212)
Q Consensus 69 wvlrC~aC~k~~~--~-~~k~FCp~CG~~ 94 (212)
-+.+|+ |++..- . ....-|| ||..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEE
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCe
Confidence 368999 997742 1 2246799 9974
No 51
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=62.80 E-value=2.3 Score=32.12 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=15.4
Q ss_pred CccccCCCCCCCceeEEEEE
Q 028198 84 GRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsvs 103 (212)
.+.+||.||.. .++|+++.
T Consensus 35 ~ky~CpfCgk~-~vkR~a~G 53 (92)
T 3iz5_m 35 SKYFCEFCGKF-AVKRKAVG 53 (92)
T ss_dssp SCBCCTTTCSS-CBEEEETT
T ss_pred ccccCcccCCC-eeEecCcc
Confidence 36789999997 89998853
No 52
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=61.95 E-value=4.7 Score=35.41 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=18.0
Q ss_pred eEEEEccCccccccccC-------------ccccCCCCCC
Q 028198 68 RWILKCHACYTITAEIG-------------RIFCPKCGNG 94 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~~-------------k~FCp~CG~~ 94 (212)
-+..+|..|.+.+.... ...|| ||..
T Consensus 152 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~ 190 (290)
T 3u31_A 152 VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI 190 (290)
T ss_dssp EEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB
T ss_pred cCcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE
Confidence 46789999998764211 24599 9974
No 53
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=60.95 E-value=4.6 Score=36.67 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=20.4
Q ss_pred eeEEEEccCccccccc----cCccccCCCCCC
Q 028198 67 HRWILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
..|++.|++|+..... .....||.||++
T Consensus 241 ~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~ 272 (392)
T 3axs_A 241 FGYIQYCFNCMNREVVTDLYKFKEKCPHCGSK 272 (392)
T ss_dssp EEEEEECTTTCCEEEECCGGGCCSBCTTTCSB
T ss_pred cceEEECCCCCCeEeecCCCCCCCcCCCCCCc
Confidence 4789999999854321 124689999986
No 54
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=59.86 E-value=2.7 Score=31.72 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=15.4
Q ss_pred CccccCCCCCCCceeEEEEE
Q 028198 84 GRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsvs 103 (212)
.+.+||.||.. .++|+++.
T Consensus 35 ~ky~CpfCgk~-~vkR~a~G 53 (92)
T 3izc_m 35 ARYDCSFCGKK-TVKRGAAG 53 (92)
T ss_dssp SCCCCSSSCSS-CCEEEETT
T ss_pred cCCcCCCCCCc-eeeecccc
Confidence 36789999987 89998853
No 55
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.10 E-value=6.1 Score=30.28 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=28.3
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEE--EeC---CCceEEeecCC
Q 028198 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAV--TVG---ENGIVLASRRP 116 (212)
Q Consensus 71 lrC~aC~k~~~~~~k~FCp~CG~~~TL~Rvsv--sv~---~~G~~~~~~k~ 116 (212)
+.|.+|.+-+.. .-+||.||.+ |.+... .|| .+|..+.++++
T Consensus 49 ~hC~~C~~~f~~--~a~CPdC~q~--LevLkACGAvdYFC~~chgLiSKkR 95 (101)
T 2jne_A 49 ARCRSCGEFIEM--KALCPDCHQP--LQVLKACGAVDYFCQHGHGLISKKR 95 (101)
T ss_dssp EEETTTCCEEEE--EEECTTTCSB--CEEEEETTEEEEEETTTTEEECTTT
T ss_pred EECccccchhhc--cccCcchhhH--HHHHHHhcCcchhhccCCceeecce
Confidence 469999987765 4799999997 766532 122 45665666554
No 56
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=57.86 E-value=2.4 Score=41.08 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=3.0
Q ss_pred EEEccCcccccccc---CccccCCCCCC
Q 028198 70 ILKCHACYTITAEI---GRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~---~k~FCp~CG~~ 94 (212)
+-+|..|+.+.... ....||+||+.
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 56899999755311 12579999985
No 57
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=57.74 E-value=4.7 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.880 Sum_probs=14.9
Q ss_pred EEccCccccccccCccccCCCCC
Q 028198 71 LKCHACYTITAEIGRIFCPKCGN 93 (212)
Q Consensus 71 lrC~aC~k~~~~~~k~FCp~CG~ 93 (212)
..|..|+... .....||.||.
T Consensus 31 ~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEE--CTTBCCTTTCB
T ss_pred eECCCCCCEe--CCceEcCCCCc
Confidence 4688888773 34567888884
No 58
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=57.34 E-value=6.3 Score=34.58 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.1
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCC
Q 028198 68 RWILKCHACYTITAEI---------GRIFCPKCGNG 94 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~---------~k~FCp~CG~~ 94 (212)
-+..+|..|.+.+... ....||.||+.
T Consensus 137 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 172 (285)
T 3glr_A 137 FASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172 (285)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB
T ss_pred CCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc
Confidence 5668999999876521 12369999974
No 59
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.31 E-value=2.1 Score=27.71 Aligned_cols=9 Identities=56% Similarity=1.339 Sum_probs=4.3
Q ss_pred ccccCCCCC
Q 028198 85 RIFCPKCGN 93 (212)
Q Consensus 85 k~FCp~CG~ 93 (212)
...|+.||.
T Consensus 24 elvC~~CG~ 32 (50)
T 1pft_A 24 EIVCAKCGY 32 (50)
T ss_dssp EEEESSSCC
T ss_pred eEECcccCC
Confidence 344555554
No 60
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=57.17 E-value=8.8 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=13.9
Q ss_pred cccCCCCCCCceeE--EEEEeCCCce
Q 028198 86 IFCPKCGNGGTLRK--VAVTVGENGI 109 (212)
Q Consensus 86 ~FCp~CG~~~TL~R--vsvsv~~~G~ 109 (212)
.-||.||+. +|.+ ..++++=+|.
T Consensus 3 m~Cp~Cg~~-~l~~~~~~~~~~~~G~ 27 (78)
T 3ga8_A 3 MKCPVCHQG-EMVSGIKDIPYTFRGR 27 (78)
T ss_dssp CBCTTTSSS-BEEEEEEEEEEEETTE
T ss_pred eECCCCCCC-eeEeEEEEEEEEECCE
Confidence 369999986 6743 3344443444
No 61
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.07 E-value=5 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=18.4
Q ss_pred EEEEccCccccccc----cCccccCCCCCC
Q 028198 69 WILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 69 wvlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
...+|.+|+++.-. .+...|..||.-
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 34689999977532 336789999973
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=56.55 E-value=3.2 Score=32.56 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=15.3
Q ss_pred CccccCCCCCCCceeEEEE
Q 028198 84 GRIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsv 102 (212)
.+.+||.||.. +++|+++
T Consensus 59 akytCPfCGk~-~vKR~av 76 (116)
T 3cc2_Z 59 EDHACPNCGED-RVDRQGT 76 (116)
T ss_dssp SCEECSSSCCE-EEEEEET
T ss_pred cCCcCCCCCCc-eeEecCc
Confidence 47899999996 8999985
No 63
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=55.87 E-value=3.9 Score=31.46 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.5
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
..|||.|||-
T Consensus 4 ~~FCp~Cgnl 13 (122)
T 1twf_I 4 FRFCRDCNNM 13 (122)
T ss_dssp CCBCSSSCCB
T ss_pred CCcccccCcc
Confidence 4799999984
No 64
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=55.11 E-value=5.6 Score=29.43 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=21.3
Q ss_pred eEEEEccCccccc----cc-------c-CccccCCCCCCCceeE
Q 028198 68 RWILKCHACYTIT----AE-------I-GRIFCPKCGNGGTLRK 99 (212)
Q Consensus 68 ~wvlrC~aC~k~~----~~-------~-~k~FCp~CG~~~TL~R 99 (212)
.-.|.|.+|.... .. + -+.|||.|... ||-+
T Consensus 36 ~I~L~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKH-tlHk 78 (82)
T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 78 (82)
T ss_pred EEEEEEecCCCeeEEEecCCCCCCcceEEEccCCCCCCe-eeEE
Confidence 5579999995421 11 1 15799999997 8754
No 65
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=54.95 E-value=6.9 Score=31.44 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.0
Q ss_pred ceeeEecchHHHHHHHHHhCceeecCC
Q 028198 33 STVACITGDYAMQNVILQMGLRLLAPG 59 (212)
Q Consensus 33 ~~vac~TdDfAmQNVllqmGL~~~s~~ 59 (212)
..|+++|.|..|...|...||.++++.
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~~ 177 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDIP 177 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECHH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcHH
Confidence 379999999999999999999987653
No 66
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=54.50 E-value=2.8 Score=32.24 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=14.5
Q ss_pred CccccCCCCCCCceeEEEE
Q 028198 84 GRIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~Rvsv 102 (212)
.+.+||.||.. .++|+++
T Consensus 35 aky~CpfCgk~-~vKR~a~ 52 (103)
T 4a17_Y 35 AKYGCPFCGKV-AVKRAAV 52 (103)
T ss_dssp SCEECTTTCCE-EEEEEET
T ss_pred cCCCCCCCCCc-eeeecCc
Confidence 36789999987 8888874
No 67
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=53.76 E-value=5.6 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEccCccccccccCccccCCCCC-C
Q 028198 71 LKCHACYTITAEIGRIFCPKCGN-G 94 (212)
Q Consensus 71 lrC~aC~k~~~~~~k~FCp~CG~-~ 94 (212)
-.|.-|++.....-+..|..||. +
T Consensus 18 ~~CrRCG~~syH~qK~~Ca~CGygp 42 (57)
T 1vq8_1 18 TKCRRCGEKSYHTKKKVCSSCGFGK 42 (57)
T ss_dssp EECTTTCSEEEETTTTEETTTCTTT
T ss_pred ccccccCChhhhccccccccccCCc
Confidence 57999998877777899999998 5
No 68
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=53.64 E-value=6.3 Score=40.59 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=20.6
Q ss_pred EEEccCccccc----------cccCccccCCCCCCCceeE
Q 028198 70 ILKCHACYTIT----------AEIGRIFCPKCGNGGTLRK 99 (212)
Q Consensus 70 vlrC~aC~k~~----------~~~~k~FCp~CG~~~TL~R 99 (212)
-|+|+-|.... .|++..-||+||.+ |.|
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~--~~~ 539 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK--YKK 539 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB--CEE
T ss_pred cccCccccccccccccccccccCCccccCcccccc--ccc
Confidence 38999999532 25667789999986 554
No 69
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=53.21 E-value=6.7 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEccCccccccc----cCccccCCCCCC
Q 028198 69 WILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 69 wvlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
...+|.+|++++.. .+...|..||.-
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 34689999987642 346889999974
No 70
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.56 E-value=5 Score=27.74 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.1
Q ss_pred EccCccccccccCccccCCCCCC
Q 028198 72 KCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 72 rC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
.|+||.+.+.+.....||.|++.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~ 39 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV 39 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC
T ss_pred cccccCcccCCCccEECCccCcC
Confidence 39999988765544569999873
No 71
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=51.51 E-value=6.8 Score=28.92 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=18.6
Q ss_pred EEEccCccccccc----cCccccCCCCCC
Q 028198 70 ILKCHACYTITAE----IGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~----~~k~FCp~CG~~ 94 (212)
..+|.+|+.++.. .+...|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 4689999987632 346889999973
No 72
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.20 E-value=4.5 Score=30.67 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=8.6
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
-.|||.|||-
T Consensus 4 m~FCp~Cgn~ 13 (113)
T 3h0g_I 4 FQYCIECNNM 13 (113)
T ss_dssp CCCCSSSCCC
T ss_pred ceeCcCCCCE
Confidence 3799999995
No 73
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=50.90 E-value=1.9 Score=31.13 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=12.5
Q ss_pred ccccCCCCCCCceeEEEE
Q 028198 85 RIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvsv 102 (212)
+..||.||.. .++|+++
T Consensus 26 ky~C~fCgk~-~vkR~a~ 42 (72)
T 3jyw_9 26 RYDCSFCGKK-TVKRGAA 42 (72)
T ss_dssp CBCCSSCCSS-CBSBCSS
T ss_pred CccCCCCCCc-eeEecCC
Confidence 5678888876 7777664
No 74
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=50.05 E-value=4.8 Score=31.76 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.7
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
-.|||.|||=
T Consensus 24 ~~FCPeCgNm 33 (133)
T 3qt1_I 24 FRFCRDCNNM 33 (133)
T ss_dssp CCBCTTTCCB
T ss_pred CeeCCCCCCE
Confidence 5899999984
No 75
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.53 E-value=3.5 Score=33.41 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=24.8
Q ss_pred eeeEEEEccCccccc-cccCccccCCCCCCCceeEEE
Q 028198 66 LHRWILKCHACYTIT-AEIGRIFCPKCGNGGTLRKVA 101 (212)
Q Consensus 66 ~k~wvlrC~aC~k~~-~~~~k~FCp~CG~~~TL~Rvs 101 (212)
+-.-.-+|..|+..- +......||.||+. -.+|||
T Consensus 136 lGvv~a~~~~~g~~m~~~~~~~~cp~~g~~-e~RKva 171 (179)
T 3m7n_A 136 MGVLRALCSNCKTEMVREGDILKCPECGRV-EKRKIS 171 (179)
T ss_dssp CEEEECBCTTTCCBCEECSSSEECSSSCCE-ECCCBC
T ss_pred CCEEEecccccCCceEECCCEEECCCCCCE-EEEecc
Confidence 445556788898643 33356789999997 778877
No 76
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=49.30 E-value=7.5 Score=32.42 Aligned_cols=23 Identities=30% Similarity=0.767 Sum_probs=16.9
Q ss_pred EEccCccccc--cccCccccCCCCC
Q 028198 71 LKCHACYTIT--AEIGRIFCPKCGN 93 (212)
Q Consensus 71 lrC~aC~k~~--~~~~k~FCp~CG~ 93 (212)
..|..|.... ......||+.||.
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCcccccccccccccccc
Confidence 4699999752 2334689999996
No 77
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=48.52 E-value=7 Score=29.59 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.6
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
--.|..|++.....-+..|..||.+
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYP 40 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSS
T ss_pred cceecCcCchhhhcccccccccCCc
Confidence 3579999988877778999999987
No 78
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=47.61 E-value=8.1 Score=26.66 Aligned_cols=22 Identities=27% Similarity=0.951 Sum_probs=14.8
Q ss_pred EEEccCccccccccCccccCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGN 93 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~ 93 (212)
+-.|..|+...- .-..||.||.
T Consensus 30 l~~c~~cGe~~~--~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKP--PHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEEC--TTSCCTTTCE
T ss_pred eeECCCCCCeec--ceEEcCCCCc
Confidence 456888887543 3456888884
No 79
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=47.15 E-value=6.9 Score=29.65 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
--.|..|++.....-+..|..||.+
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 16 HTLCRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp EEECTTTCSEEEETTTTEESSSCGG
T ss_pred cceecCcCchhhhhccccccccCCc
Confidence 4579999988877778999999987
No 80
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.23 E-value=11 Score=33.53 Aligned_cols=15 Identities=33% Similarity=0.848 Sum_probs=11.0
Q ss_pred CccccCCCCCCCcee
Q 028198 84 GRIFCPKCGNGGTLR 98 (212)
Q Consensus 84 ~k~FCp~CG~~~TL~ 98 (212)
.+.+||+||+..++.
T Consensus 181 ~~~~CPvCGs~P~~s 195 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG 195 (309)
T ss_dssp TCSSCTTTCCCEEEE
T ss_pred cCCCCCCCCCcCcee
Confidence 368999999974333
No 81
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=45.20 E-value=9.1 Score=26.44 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=16.6
Q ss_pred EEccCccccccccCccccCCCCCC
Q 028198 71 LKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 71 lrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
..|..|..+... +-||.||+.
T Consensus 2 rAC~~C~~v~~~---~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTND---EICPICHSP 22 (59)
T ss_dssp EEETTTCBEESS---SBCTTTCCB
T ss_pred cccccCCcccCC---CCCCCCCCC
Confidence 469999988654 479999984
No 82
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.94 E-value=5.1 Score=27.18 Aligned_cols=9 Identities=44% Similarity=1.427 Sum_probs=4.6
Q ss_pred ccccCCCCC
Q 028198 85 RIFCPKCGN 93 (212)
Q Consensus 85 k~FCp~CG~ 93 (212)
..+|..||-
T Consensus 30 e~vC~~CGl 38 (58)
T 1dl6_A 30 DMICPECGL 38 (58)
T ss_dssp CEECTTTCC
T ss_pred eEEeCCCCC
Confidence 345555554
No 83
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=44.08 E-value=9.9 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=19.6
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
--.|..|+.-.....+..|.+||.+
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCcCCCCCCccCcCccccCcccCCc
Confidence 3469999977666678889999986
No 84
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.79 E-value=8.4 Score=29.04 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=14.8
Q ss_pred ccccCCCCCCCceeEEEEE
Q 028198 85 RIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvsvs 103 (212)
+-|||.|+.. |+.+|+-+
T Consensus 8 ~tyC~~C~kH-t~HkVt~y 25 (94)
T 3j21_j 8 RTYCPFCKKH-TIHKVERV 25 (94)
T ss_dssp EECCTTTTSC-EEEEECCC
T ss_pred eecCcCCCCC-cceEEEEE
Confidence 5799999997 99888743
No 85
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=43.42 E-value=7.8 Score=30.84 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=15.7
Q ss_pred cCCCCcceeeeeEEEEccCccccc
Q 028198 57 APGGMQIRQLHRWILKCHACYTIT 80 (212)
Q Consensus 57 s~~g~~I~~~k~wvlrC~aC~k~~ 80 (212)
+++...+++-+.|.++|.||+...
T Consensus 110 sPdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 110 RPDTRIIREGRISLLKCEACGAKA 133 (138)
T ss_dssp SCSSCCEEETTTTEEECSTTSCCC
T ss_pred CcCcEEEEcCCeEEEEccCCCCCc
Confidence 556666666667777777776544
No 86
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=43.12 E-value=14 Score=27.75 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=23.2
Q ss_pred EEccCccccc---cccCccccCCCCCCCceeEEEEE
Q 028198 71 LKCHACYTIT---AEIGRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 71 lrC~aC~k~~---~~~~k~FCp~CG~~~TL~Rvsvs 103 (212)
.+|. |..-+ ..++..-|+.||+. -..|+++.
T Consensus 49 FkC~-C~~Rt~sl~r~P~~~C~~Cg~~-~wer~~M~ 82 (92)
T 2kwq_A 49 FKCP-CGNRTISLDRLPKKHCSTCGLF-KWERVGML 82 (92)
T ss_dssp EECT-TSCEEEESSSSCCSCCTTTCSC-CCEEECCC
T ss_pred EECC-CCCceeEeeeCCCCCCCCCCCC-ceEEeecc
Confidence 7895 98655 44567789999997 68888753
No 87
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.12 E-value=6 Score=29.11 Aligned_cols=9 Identities=44% Similarity=1.006 Sum_probs=7.5
Q ss_pred cccCCCCCC
Q 028198 86 IFCPKCGNG 94 (212)
Q Consensus 86 ~FCp~CG~~ 94 (212)
.-||.||++
T Consensus 48 ~~CPvCgs~ 56 (112)
T 1l8d_A 48 GKCPVCGRE 56 (112)
T ss_dssp EECTTTCCE
T ss_pred CCCCCCCCc
Confidence 459999986
No 88
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=42.98 E-value=15 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=19.6
Q ss_pred EEEccCccccccccC---ccccCCCCCCCc
Q 028198 70 ILKCHACYTITAEIG---RIFCPKCGNGGT 96 (212)
Q Consensus 70 vlrC~aC~k~~~~~~---k~FCp~CG~~~T 96 (212)
...|..|.+.+.... ...||.||+-+|
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred EEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 368999998876533 236999998743
No 89
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=42.81 E-value=11 Score=30.92 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=26.0
Q ss_pred eEEEEccCcccccc--ccCccccCCCCCC-CceeE--EEEEe-CCCceE
Q 028198 68 RWILKCHACYTITA--EIGRIFCPKCGNG-GTLRK--VAVTV-GENGIV 110 (212)
Q Consensus 68 ~wvlrC~aC~k~~~--~~~k~FCp~CG~~-~TL~R--vsvsv-~~~G~~ 110 (212)
-|-..|+.|.|.-. ....-+|++||.. ..-.| +++.| |..|.+
T Consensus 40 ~~Y~ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RYil~~~i~D~TG~~ 88 (172)
T 3u50_C 40 LYYYRCTCQGKSVLKYHGDSFFCESCQQFINPQVHLMLRAFVQDSTGTI 88 (172)
T ss_dssp CEEEECTTSCCCEEEETTTEEEETTTTEECCCEEEECEEEEEEETTEEE
T ss_pred EEehhchhhCCEeeeCCCCeEECCCCCCCCCceEEEEEEEEEEeCCCCE
Confidence 45678999996543 2346789999962 11222 44444 455765
No 90
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=42.28 E-value=16 Score=32.39 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=22.1
Q ss_pred eEEEEccC--ccccccc---------cCccccCCCCCCCceeEEEEE
Q 028198 68 RWILKCHA--CYTITAE---------IGRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 68 ~wvlrC~a--C~k~~~~---------~~k~FCp~CG~~~TL~Rvsvs 103 (212)
-+..+|.. |.+.+.. .....||.||.. | |-.|.
T Consensus 157 ~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~--l-rP~VV 200 (323)
T 1j8f_A 157 FYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL--V-KPDIV 200 (323)
T ss_dssp EEEEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCB--E-EEEEC
T ss_pred cceeecCCCccCccccHHHHHHhhccCCCCCCcCCCCc--c-CCCEE
Confidence 56688999 9987641 112479999974 4 45543
No 91
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.79 E-value=8.9 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.859 Sum_probs=19.9
Q ss_pred EEccCccccccccCccccCCCCC
Q 028198 71 LKCHACYTITAEIGRIFCPKCGN 93 (212)
Q Consensus 71 lrC~aC~k~~~~~~k~FCp~CG~ 93 (212)
-.|.-|++.....-+..|..||.
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCT
T ss_pred eeecccCcchhccccccccccCC
Confidence 46999998877777899999998
No 92
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=41.79 E-value=7.8 Score=29.20 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=15.3
Q ss_pred ccccCCCCCCCceeEEEEE
Q 028198 85 RIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvsvs 103 (212)
+-|||.|+.. |+.+|+-+
T Consensus 8 ~tyCp~C~kH-t~HkVtqy 25 (92)
T 1vq8_3 8 NTYCPHCNEH-QEHEVEKV 25 (92)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred cccCCCCCCC-ccEEEEEE
Confidence 5699999997 99988864
No 93
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=41.55 E-value=8.6 Score=25.76 Aligned_cols=31 Identities=10% Similarity=-0.082 Sum_probs=20.7
Q ss_pred eEEEEccCccccc----cc-----c-CccccCCCCCCCceeE
Q 028198 68 RWILKCHACYTIT----AE-----I-GRIFCPKCGNGGTLRK 99 (212)
Q Consensus 68 ~wvlrC~aC~k~~----~~-----~-~k~FCp~CG~~~TL~R 99 (212)
.-.|.|.+|.... .. + -+.|||.|... ||-+
T Consensus 9 ~i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~kh-tlhk 49 (52)
T 2ftc_P 9 LVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQR-VLFV 49 (52)
T ss_pred EEEEEEecCCCeeEEEecCCCCceeEEEccCCCCCce-EeEE
Confidence 4568999995421 11 1 15799999997 8754
No 94
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=40.55 E-value=6.9 Score=36.24 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=3.6
Q ss_pred eeeeEEEEccCcccccc----c-------cCccccCCCCCC
Q 028198 65 QLHRWILKCHACYTITA----E-------IGRIFCPKCGNG 94 (212)
Q Consensus 65 ~~k~wvlrC~aC~k~~~----~-------~~k~FCp~CG~~ 94 (212)
....|++||..|..... . .....||.||..
T Consensus 332 ~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 372 (441)
T 3e20_C 332 DMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAE 372 (441)
T ss_dssp CCEEC----------CCEECSCTTTCCC-------------
T ss_pred ccceeEEECCCCceEEEecCccccccccccccccCcccCcc
Confidence 34578899999963321 1 112379999986
No 95
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=39.62 E-value=13 Score=31.10 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=12.6
Q ss_pred eEEEEccCccccccccC------ccccCCCCCC
Q 028198 68 RWILKCHACYTITAEIG------RIFCPKCGNG 94 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~~~------k~FCp~CG~~ 94 (212)
-+..+|..|.+.+.... .--|+.||..
T Consensus 111 ~~~~~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~ 143 (235)
T 1s5p_A 111 LLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAP 143 (235)
T ss_dssp EEEEEETTTCCEEECCSCCCSSCCC-------C
T ss_pred ceEEEeCCCCCcccchhhccCCCCCCCCCCCCe
Confidence 56688999998765211 2357778864
No 96
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=37.92 E-value=9.6 Score=29.49 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.1
Q ss_pred ccccCCCCCCCceeEEEEE
Q 028198 85 RIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvsvs 103 (212)
+-|||.|+.. |+.+|+-+
T Consensus 9 ~tyCpkC~kH-t~HkVtqy 26 (109)
T 4a18_C 9 KTYCKKCNSH-TNHKVSQY 26 (109)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred eecCcCCCCC-cceEEEEe
Confidence 5799999997 99888854
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.81 E-value=14 Score=32.86 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.3
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 028198 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
.+.|.-|+....- .+.-||.||+.
T Consensus 208 ~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp EEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred EEEeCCCCCEEee-cCcCCcCCCCC
Confidence 6899999987754 58899999995
No 98
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=37.48 E-value=14 Score=33.04 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.3
Q ss_pred eEEEEccCccccccc---------cCccccCCCCC
Q 028198 68 RWILKCHACYTITAE---------IGRIFCPKCGN 93 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~---------~~k~FCp~CG~ 93 (212)
-+..+|..|.+.+.. .....||.||.
T Consensus 159 l~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 159 FATATCVTCHWNLPGERIFNKIRNLELPLCPYCYK 193 (354)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHH
T ss_pred cCccccCCCCCcCCHHHHHHHhhccCCCcCccccc
Confidence 567899999976532 12357999983
No 99
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=36.67 E-value=24 Score=25.97 Aligned_cols=11 Identities=36% Similarity=1.111 Sum_probs=8.9
Q ss_pred cccCCCCCCCce
Q 028198 86 IFCPKCGNGGTL 97 (212)
Q Consensus 86 ~FCp~CG~~~TL 97 (212)
..||.||.. +|
T Consensus 3 M~Cp~Cg~~-~~ 13 (133)
T 3o9x_A 3 MKCPVCHQG-EM 13 (133)
T ss_dssp CBCTTTSSS-BE
T ss_pred cCCCcCCCC-ce
Confidence 479999986 55
No 100
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=36.49 E-value=31 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.2
Q ss_pred ceeeEecchHHHHHHHHHhCceeecCCCCc
Q 028198 33 STVACITGDYAMQNVILQMGLRLLAPGGMQ 62 (212)
Q Consensus 33 ~~vac~TdDfAmQNVllqmGL~~~s~~g~~ 62 (212)
....++|.|..++.++...|+.++.+.+.+
T Consensus 110 ~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~~ 139 (147)
T 1o4w_A 110 YGCILITNDKELKRKAKQRGIPVGYLKEDK 139 (147)
T ss_dssp HTCEEECCCHHHHHHHHHTTCCEECCCCCC
T ss_pred hCCEEEECCHHHHHHHHHCCCeEEEecCCc
Confidence 347899999999999999999999987654
No 101
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.64 E-value=15 Score=26.82 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=9.9
Q ss_pred ccccCCCCCCCceeEEE
Q 028198 85 RIFCPKCGNGGTLRKVA 101 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvs 101 (212)
+..||.||.. .+.+.+
T Consensus 27 ~y~Cp~CG~~-~v~r~a 42 (83)
T 1vq8_Z 27 DHACPNCGED-RVDRQG 42 (83)
T ss_dssp CEECSSSCCE-EEEEEE
T ss_pred cCcCCCCCCc-ceeccC
Confidence 4567777765 555555
No 102
>1r8o_B STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=34.09 E-value=33 Score=24.28 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=18.6
Q ss_pred cCccccCCCCCCCceeEEEEEeCCCceE
Q 028198 83 IGRIFCPKCGNGGTLRKVAVTVGENGIV 110 (212)
Q Consensus 83 ~~k~FCp~CG~~~TL~Rvsvsv~~~G~~ 110 (212)
....|||.|+- + .-|-+.++++|.-
T Consensus 29 Yklv~CP~c~~--~-~diGI~~d~~g~r 53 (71)
T 1r8o_B 29 YKDVYSSSKGR--D-LDDGIEVNKKKEK 53 (71)
T ss_dssp EEEEEECTTSC--E-EEEEEEECTTSCE
T ss_pred eEEEECCCCCc--c-cceeEEEeCCCEE
Confidence 34689999843 4 8888888888753
No 103
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=34.07 E-value=27 Score=21.30 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=12.5
Q ss_pred cccCCCCCCCceeEEEEEeCCCceE
Q 028198 86 IFCPKCGNGGTLRKVAVTVGENGIV 110 (212)
Q Consensus 86 ~FCp~CG~~~TL~Rvsvsv~~~G~~ 110 (212)
..|+.|||- |.|..+.+|.+
T Consensus 7 Y~C~~CGni-----vev~~~g~~~l 26 (36)
T 1dxg_A 7 YKCELCGQV-----VKVLEEGGGTL 26 (36)
T ss_dssp EECTTTCCE-----EEEEECCSSCE
T ss_pred EEcCCCCcE-----EEEEeCCCcCE
Confidence 469999884 44444555554
No 104
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.67 E-value=15 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=14.1
Q ss_pred cCCCCcce--eeeeEEEEccCcccccc
Q 028198 57 APGGMQIR--QLHRWILKCHACYTITA 81 (212)
Q Consensus 57 s~~g~~I~--~~k~wvlrC~aC~k~~~ 81 (212)
+++...++ +-+.|.++|.||+...+
T Consensus 111 sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 111 NPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp CSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred CCccEEEEecCCCEEEEEccCCCCCCc
Confidence 45555443 45566666666665443
No 105
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=33.39 E-value=8.8 Score=30.96 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=8.6
Q ss_pred CCCCcceeeeeEEEEccCccc
Q 028198 58 PGGMQIRQLHRWILKCHACYT 78 (212)
Q Consensus 58 ~~g~~I~~~k~wvlrC~aC~k 78 (212)
++...+++-+.|.++|.||+.
T Consensus 113 PdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 113 PDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp TTCCCCBSSSSBCCCCSSSCC
T ss_pred cCcEEEEeCCEEEEEecCCCC
Confidence 333333333444444444443
No 106
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.02 E-value=15 Score=32.21 Aligned_cols=15 Identities=40% Similarity=1.123 Sum_probs=11.2
Q ss_pred cccCCCCCCCceeEEE
Q 028198 86 IFCPKCGNGGTLRKVA 101 (212)
Q Consensus 86 ~FCp~CG~~~TL~Rvs 101 (212)
.+||.||+. .|.+..
T Consensus 35 ~yCPnCG~~-~l~~f~ 49 (257)
T 4esj_A 35 SYCPNCGNN-PLNHFE 49 (257)
T ss_dssp CCCTTTCCS-SCEEC-
T ss_pred CcCCCCCCh-hhhhcc
Confidence 589999997 676543
No 107
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=33.01 E-value=8 Score=38.36 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=16.8
Q ss_pred EccCccccccccC-ccc------cCCCCCC
Q 028198 72 KCHACYTITAEIG-RIF------CPKCGNG 94 (212)
Q Consensus 72 rC~aC~k~~~~~~-k~F------Cp~CG~~ 94 (212)
.|..|.+.|.++. |.| ||.||=.
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCC
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCe
Confidence 4777777777643 666 9999965
No 108
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=31.91 E-value=25 Score=30.18 Aligned_cols=14 Identities=14% Similarity=0.577 Sum_probs=11.0
Q ss_pred eEEEEccCcccccc
Q 028198 68 RWILKCHACYTITA 81 (212)
Q Consensus 68 ~wvlrC~aC~k~~~ 81 (212)
-+..+|..|.+.+.
T Consensus 132 ~~~~~C~~C~~~~~ 145 (273)
T 3riy_A 132 LFKTRCTSCGVVAE 145 (273)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CCeeEcCCCCCccc
Confidence 46789999998763
No 109
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.27 E-value=14 Score=26.01 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=6.4
Q ss_pred cccCCCCCC
Q 028198 86 IFCPKCGNG 94 (212)
Q Consensus 86 ~FCp~CG~~ 94 (212)
..||.|+++
T Consensus 9 L~CP~ck~~ 17 (68)
T 2hf1_A 9 LVCPLCKGP 17 (68)
T ss_dssp CBCTTTCCB
T ss_pred eECCCCCCc
Confidence 468888865
No 110
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=30.90 E-value=12 Score=31.05 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=19.8
Q ss_pred EccCcccccccc-CccccCCCCCCCceeEEEEE
Q 028198 72 KCHACYTITAEI-GRIFCPKCGNGGTLRKVAVT 103 (212)
Q Consensus 72 rC~aC~k~~~~~-~k~FCp~CG~~~TL~Rvsvs 103 (212)
+|.....+.+.. ....||.||+. -.||||--
T Consensus 171 ~c~~g~~m~~~~~~~m~cp~cg~~-E~RKva~~ 202 (209)
T 2nn6_I 171 HSESGIQMVPISWCEMQCPKTHTK-EFRKVARV 202 (209)
T ss_dssp BCSSSCBCEEEETTEEECTTTTCC-BCCCC---
T ss_pred EcCCCCEEEEccCCEEECCCCCCE-EeeccCCC
Confidence 677744444432 35789999998 88988843
No 111
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=29.51 E-value=46 Score=30.81 Aligned_cols=36 Identities=31% Similarity=0.720 Sum_probs=25.3
Q ss_pred eeEEEEccCccccccc-c--CccccCCCCCCCceeEEEE
Q 028198 67 HRWILKCHACYTITAE-I--GRIFCPKCGNGGTLRKVAV 102 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~-~--~k~FCp~CG~~~TL~Rvsv 102 (212)
+.-++.|..|+.+... . ....|+.|++...+.+|.+
T Consensus 2 k~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~i 40 (436)
T 3qqc_A 2 KTEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEM 40 (436)
T ss_dssp CEEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEE
T ss_pred ceEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEc
Confidence 3456899999987532 1 2367999998756777764
No 112
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=28.95 E-value=14 Score=27.42 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.9
Q ss_pred cCccccCCCCCC
Q 028198 83 IGRIFCPKCGNG 94 (212)
Q Consensus 83 ~~k~FCp~CG~~ 94 (212)
..+.||+.||..
T Consensus 65 ~~r~FC~~CGs~ 76 (118)
T 3fac_A 65 AKHWFCRTCGIY 76 (118)
T ss_dssp SEEEEETTTCCE
T ss_pred EeeEECCCCCcc
Confidence 347899999985
No 113
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.85 E-value=22 Score=20.53 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=7.5
Q ss_pred EEccCcccccc
Q 028198 71 LKCHACYTITA 81 (212)
Q Consensus 71 lrC~aC~k~~~ 81 (212)
+.|.-|.+.+.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 56777777664
No 114
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.68 E-value=14 Score=26.00 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=7.5
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (68)
T 2jr6_A 8 ILVCPVTKGR 17 (68)
T ss_dssp CCBCSSSCCB
T ss_pred heECCCCCCc
Confidence 4578888875
No 115
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.42 E-value=18 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=17.2
Q ss_pred EEEccCcccccccc----------CccccCCCCCC
Q 028198 70 ILKCHACYTITAEI----------GRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~~----------~k~FCp~CG~~ 94 (212)
-+.|.-|++.+... ....|+.||..
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 47899999866421 12469999975
No 116
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.29 E-value=14 Score=26.15 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=7.8
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (70)
T 2js4_A 8 ILVCPVCKGR 17 (70)
T ss_dssp CCBCTTTCCB
T ss_pred heECCCCCCc
Confidence 4579999985
No 117
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=27.22 E-value=19 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=11.0
Q ss_pred cCCCCcce--eeeeEEEEccCcccc
Q 028198 57 APGGMQIR--QLHRWILKCHACYTI 79 (212)
Q Consensus 57 s~~g~~I~--~~k~wvlrC~aC~k~ 79 (212)
+++...++ +-+.|.++|.||+..
T Consensus 104 sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 104 NPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCC
T ss_pred CCccEEEEecCCCEEEEEccccCCc
Confidence 34444444 344555555555543
No 118
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=27.17 E-value=34 Score=22.45 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=12.7
Q ss_pred ccccCCCCCCCceeEEEEEe
Q 028198 85 RIFCPKCGNGGTLRKVAVTV 104 (212)
Q Consensus 85 k~FCp~CG~~~TL~Rvsvsv 104 (212)
..-||+||+. .+.-..+-+
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~ 33 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQT 33 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECC
T ss_pred EeECCCCCCC-EEEEEEeec
Confidence 4579999997 555444443
No 119
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=26.72 E-value=31 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=19.4
Q ss_pred eeeeEEEEc--cCcccccccc----------CccccCCCCCC
Q 028198 65 QLHRWILKC--HACYTITAEI----------GRIFCPKCGNG 94 (212)
Q Consensus 65 ~~k~wvlrC--~aC~k~~~~~----------~k~FCp~CG~~ 94 (212)
++..=.++| ..|+...... .-..||.|++.
T Consensus 136 ~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~ 177 (268)
T 2vl6_A 136 RIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268)
T ss_dssp EEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred EeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCC
Confidence 344455899 9999554221 12469999986
No 120
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.42 E-value=14 Score=25.88 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=7.4
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
..-||.|+++
T Consensus 10 iL~CP~ck~~ 19 (67)
T 2jny_A 10 VLACPKDKGP 19 (67)
T ss_dssp CCBCTTTCCB
T ss_pred HhCCCCCCCc
Confidence 4578888875
No 121
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.96 E-value=21 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=18.0
Q ss_pred EEccCcccc--ccccCccccCCCCCC
Q 028198 71 LKCHACYTI--TAEIGRIFCPKCGNG 94 (212)
Q Consensus 71 lrC~aC~k~--~~~~~k~FCp~CG~~ 94 (212)
-.|+-|.-. |.+-....||-||+.
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 469999854 445557899999975
No 122
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.81 E-value=14 Score=26.00 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=9.6
Q ss_pred cCccccCCCCCC
Q 028198 83 IGRIFCPKCGNG 94 (212)
Q Consensus 83 ~~k~FCp~CG~~ 94 (212)
....||..||..
T Consensus 31 Ck~r~CaRCGg~ 42 (62)
T 2a20_A 31 CQTKFCARCGGR 42 (62)
T ss_dssp TCCEECTTSEEE
T ss_pred cCCeeecccCCE
Confidence 346899999986
No 123
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=25.81 E-value=27 Score=33.18 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.4
Q ss_pred eEEEEccCccccccc---------cCccccCCCC
Q 028198 68 RWILKCHACYTITAE---------IGRIFCPKCG 92 (212)
Q Consensus 68 ~wvlrC~aC~k~~~~---------~~k~FCp~CG 92 (212)
-+..+|..|++.+.. .....||.||
T Consensus 297 l~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 297 FATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp TTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred cceeecCCCCCcCCHHHHHHHHhccCCCCCcccc
Confidence 356799999976542 1134799998
No 124
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=25.08 E-value=63 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=20.2
Q ss_pred eeeeEEEEccCccccccc-------cCccccCCCCCC
Q 028198 65 QLHRWILKCHACYTITAE-------IGRIFCPKCGNG 94 (212)
Q Consensus 65 ~~k~wvlrC~aC~k~~~~-------~~k~FCp~CG~~ 94 (212)
++..=.++|..|+..... +.-..||.|++.
T Consensus 129 ~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 129 RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 455566999999965321 112469999997
No 125
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=24.86 E-value=7.2 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.745 Sum_probs=11.7
Q ss_pred EccCcccccccc------CccccCCCCCC
Q 028198 72 KCHACYTITAEI------GRIFCPKCGNG 94 (212)
Q Consensus 72 rC~aC~k~~~~~------~k~FCp~CG~~ 94 (212)
.|+.|...-... ...-|..||..
T Consensus 105 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 105 ECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred ECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 588888654322 23468889876
No 126
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=23.55 E-value=24 Score=28.77 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=9.9
Q ss_pred cCccccCCCCCC
Q 028198 83 IGRIFCPKCGNG 94 (212)
Q Consensus 83 ~~k~FCp~CG~~ 94 (212)
..+.||+.||..
T Consensus 96 ~~r~FC~~CGs~ 107 (196)
T 1x6m_A 96 IQRHRCRDCGVH 107 (196)
T ss_dssp EEEEEETTTCCE
T ss_pred eeeEECCCCCCc
Confidence 347899999986
No 127
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.93 E-value=16 Score=25.78 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.6
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (69)
T 2pk7_A 8 ILACPICKGP 17 (69)
T ss_dssp TCCCTTTCCC
T ss_pred heeCCCCCCc
Confidence 3579999875
No 128
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=22.82 E-value=37 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=17.6
Q ss_pred EEEccCccccccc-----cCccccCCCCCC
Q 028198 70 ILKCHACYTITAE-----IGRIFCPKCGNG 94 (212)
Q Consensus 70 vlrC~aC~k~~~~-----~~k~FCp~CG~~ 94 (212)
+..|.+|++.... .....|..||.+
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~ 34 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHS 34 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCB
T ss_pred EEECcccccccCCCCcccccCCcchhcCCc
Confidence 5779999987632 124569999986
No 129
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=22.45 E-value=37 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCcceeeeeEEEEccCcccccc------------ccCccccCCCCCC
Q 028198 59 GGMQIRQLHRWILKCHACYTITA------------EIGRIFCPKCGNG 94 (212)
Q Consensus 59 ~g~~I~~~k~wvlrC~aC~k~~~------------~~~k~FCp~CG~~ 94 (212)
+..+-+....+.++|++|+..+. .....-||+|+..
T Consensus 11 DeeRfr~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~ 58 (206)
T 3flo_B 11 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQL 58 (206)
T ss_dssp CTTTTTTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCB
T ss_pred HHHHhCcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCc
Confidence 34567778899999999985331 1123459999974
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.11 E-value=37 Score=25.93 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=28.0
Q ss_pred chHHHHHHHHHhCceeecCCCCcceeeeeEE-----EEccCccccccccC-ccccCCCCC
Q 028198 40 GDYAMQNVILQMGLRLLAPGGMQIRQLHRWI-----LKCHACYTITAEIG-RIFCPKCGN 93 (212)
Q Consensus 40 dDfAmQNVllqmGL~~~s~~g~~I~~~k~wv-----lrC~aC~k~~~~~~-k~FCp~CG~ 93 (212)
.|+.-+|..++|...-. ....|+ ..|..|.+.|.... +.-|..||.
T Consensus 42 ~e~g~~~~~lq~~~~~~--------~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 42 QELGRENQSLQIKHTQA--------LNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCC
T ss_pred HHHhhhccccccccccc--------CCCccccCCCCCCCcCcCCccccccccccCCCCCe
Confidence 35666666666543211 123575 47999998876443 567777775
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.71 E-value=37 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=15.4
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 028198 71 LKCHACYTITAEIG-RIFCPKCGN 93 (212)
Q Consensus 71 lrC~aC~k~~~~~~-k~FCp~CG~ 93 (212)
..|..|.+.+.-.. +.-|..||.
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~ 185 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQ 185 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CccCCCCCccCCcccccccCCcCC
Confidence 57999988775432 566666664
No 132
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.67 E-value=16 Score=36.18 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=17.4
Q ss_pred EEccCccccccccC-cc------ccCCCCCC
Q 028198 71 LKCHACYTITAEIG-RI------FCPKCGNG 94 (212)
Q Consensus 71 lrC~aC~k~~~~~~-k~------FCp~CG~~ 94 (212)
-.|..|.+.|.++. |. -||.||=.
T Consensus 157 ~mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~ 187 (772)
T 4g9i_A 157 PMCDFCRSEYEDPLNRRYHAEPTACPVCGPS 187 (772)
T ss_dssp CCCHHHHHHHHCSSSTTTTCTTCCCTTTSCC
T ss_pred CCChhHHHHhCCCCCCCCcCCCCCCccCCce
Confidence 35888888887654 43 49999964
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.62 E-value=41 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.689 Sum_probs=12.9
Q ss_pred EccCccccccccC-ccccCCCCC
Q 028198 72 KCHACYTITAEIG-RIFCPKCGN 93 (212)
Q Consensus 72 rC~aC~k~~~~~~-k~FCp~CG~ 93 (212)
.|..|.+.+.... +.-|..||.
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCC
T ss_pred cccCCCCccCCccccccCCCCCE
Confidence 4777777665432 455666664
No 134
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.56 E-value=30 Score=22.72 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.4
Q ss_pred ccccCCCCCC
Q 028198 85 RIFCPKCGNG 94 (212)
Q Consensus 85 k~FCp~CG~~ 94 (212)
..-||+||++
T Consensus 9 ~~~Cp~Cg~~ 18 (50)
T 1tfi_A 9 LFTCGKCKKK 18 (50)
T ss_dssp CSCCSSSCSS
T ss_pred ccCCCCCCCC
Confidence 4579999997
No 135
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.46 E-value=35 Score=25.22 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=18.8
Q ss_pred eeEEEEccCccccccccCccccCCCCCC
Q 028198 67 HRWILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 67 k~wvlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
+....||..|.+....+...-|. ||+.
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~Cr-Cg~~ 48 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECR-CGNN 48 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECT-TCCE
T ss_pred cccCccchhhCCeecccCCeEcC-CCCE
Confidence 45668999999865543345684 9874
No 136
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.33 E-value=52 Score=32.22 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=27.0
Q ss_pred HHHhCcee-----ecCCCCcceeeeeEEEEccCccccccccCccccCCCCCC
Q 028198 48 ILQMGLRL-----LAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 48 llqmGL~~-----~s~~g~~I~~~k~wvlrC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
+.++||.+ +.-.|..|-++-.-+..-..=......+ -..||.||++
T Consensus 364 i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~r~~~~~~~~~-P~~CP~Cgs~ 414 (671)
T 2owo_A 364 IERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF-PTHCPVCGSD 414 (671)
T ss_dssp HHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSCBCCCC-CSBCTTTCCB
T ss_pred HHHcCCCCCCEEEEEECCCcccceeccccccCCCCCccCcC-CCCCCCCCCE
Confidence 57788776 3345888888877664321111111122 2579999997
No 137
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.30 E-value=16 Score=35.65 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=17.8
Q ss_pred EccCccccccccC-cc------ccCCCCCC
Q 028198 72 KCHACYTITAEIG-RI------FCPKCGNG 94 (212)
Q Consensus 72 rC~aC~k~~~~~~-k~------FCp~CG~~ 94 (212)
.|..|.+.|.++. |. -||.||=.
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~ 98 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPY 98 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCC
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCcc
Confidence 5999999887753 43 49999965
No 138
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.26 E-value=16 Score=27.62 Aligned_cols=23 Identities=30% Similarity=0.860 Sum_probs=16.4
Q ss_pred EccCccccccccCccccCCCCCC
Q 028198 72 KCHACYTITAEIGRIFCPKCGNG 94 (212)
Q Consensus 72 rC~aC~k~~~~~~k~FCp~CG~~ 94 (212)
.|..|+.....-..+-||.|+.+
T Consensus 45 vCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCC
T ss_pred hhHHHHHHHHhccCccccccCCc
Confidence 46667665544457899999986
No 139
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.94 E-value=25 Score=31.25 Aligned_cols=24 Identities=33% Similarity=0.872 Sum_probs=16.2
Q ss_pred EEEccCccc----ccc--ccCccccCCCCC
Q 028198 70 ILKCHACYT----ITA--EIGRIFCPKCGN 93 (212)
Q Consensus 70 vlrC~aC~k----~~~--~~~k~FCp~CG~ 93 (212)
.++|+.|+. +.. .....+|..||-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 457999985 222 234689999996
No 140
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.81 E-value=43 Score=23.58 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=15.7
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 028198 71 LKCHACYTITAEIG-RIFCPKCGN 93 (212)
Q Consensus 71 lrC~aC~k~~~~~~-k~FCp~CG~ 93 (212)
..|..|.+.+.... +.-|..||.
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCcCCcccCccccccCCCCCC
Confidence 35888888776433 567777775
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.48 E-value=40 Score=28.03 Aligned_cols=50 Identities=18% Similarity=0.429 Sum_probs=25.8
Q ss_pred HHHHHHHhCceeecCC---CCc-ceeeeeEE--EEccCccccccccC-ccccCCCCC
Q 028198 44 MQNVILQMGLRLLAPG---GMQ-IRQLHRWI--LKCHACYTITAEIG-RIFCPKCGN 93 (212)
Q Consensus 44 mQNVllqmGL~~~s~~---g~~-I~~~k~wv--lrC~aC~k~~~~~~-k~FCp~CG~ 93 (212)
+-+-|+.-|+.+=.++ .+. -...-.|+ -.|..|.+.+.-.. +.-|..||.
T Consensus 132 ~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~ 188 (226)
T 3zyq_A 132 TYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQ 188 (226)
T ss_dssp HHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCC
T ss_pred HHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcC
Confidence 4455666677763221 000 01112343 37889987765432 466666664
No 142
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=20.43 E-value=1.1e+02 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=14.3
Q ss_pred ccCCCCCCCceeEEEEEeCCCceE
Q 028198 87 FCPKCGNGGTLRKVAVTVGENGIV 110 (212)
Q Consensus 87 FCp~CG~~~TL~Rvsvsv~~~G~~ 110 (212)
-||.||.. -.|++.-..||-.
T Consensus 54 kcprcgae---gsvsivetkngyk 74 (131)
T 2x5c_A 54 KCPRCGAE---GSVSIVETKNGYK 74 (131)
T ss_dssp ECTTTSCE---EEEEEEECTTSCE
T ss_pred cCCCCCCc---cceEEEEecCCcE
Confidence 49999986 3466655667753
Done!