BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028199
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3
Length = 209
Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/200 (82%), Positives = 183/200 (91%)
Query: 10 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
DR+ M+VNT RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7 DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66
Query: 70 KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
++V YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67 QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126
Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186
Query: 190 SLIYSTVRLFAESRNQSGDG 209
SLIYSTVRLF ES+ G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206
>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s
pdb|1MVN|A Chain A, Ppc Decarboxylase Mutant C175s Complexed With
Pantothenoylaminoethenethiol
Length = 209
Score = 356 bits (914), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 163/200 (81%), Positives = 182/200 (91%)
Query: 10 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
DR+ M+VNT RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7 DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66
Query: 70 KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
++V YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67 QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126
Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEP 186
Query: 190 SLIYSTVRLFAESRNQSGDG 209
SLIYSTVRLF ES+ G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206
>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|B Chain B, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|C Chain C, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|D Chain D, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
Length = 206
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 21 RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 78
RK +L+ +GSVAA+K L + EV V T+ + HF +P V Y+D
Sbjct: 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDA 75
Query: 79 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
DEW W D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct: 76 DEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPL 135
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR- 197
PAMNT MW +P T + + + G IP V+K+L CGD G GAMAE I V+
Sbjct: 136 LFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKE 195
Query: 198 -LFAESRNQS 206
LF S Q
Sbjct: 196 VLFQHSGFQQ 205
>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|B Chain B, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|C Chain C, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|D Chain D, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|E Chain E, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|F Chain F, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|G Chain G, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|H Chain H, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|I Chain I, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|J Chain J, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|K Chain K, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|L Chain L, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
Length = 175
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 24 RILLAASGSVAAIKFGN-LCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 82
+L+ GSV +I + + S++ EV +A+ + FI+ L + Y DE E
Sbjct: 7 NVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDNYYDEFEDP 66
Query: 83 TWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAP 142
N H+++ D ++I P ++NT+ KIA G+CDNLL I + L + P
Sbjct: 67 FLN-------HVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAF--EKLSIFP 117
Query: 143 AMNTFMWNNPFTERHLMSIDELGISLIP 170
MN MW NP T+ ++ + + G+S+ P
Sbjct: 118 NMNLRMWENPVTQNNIRLLKDYGVSIYP 145
>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 24 RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATKSSLHFIDRAALPKDVIFYTDED 79
++L+ A+ S+ I N+ H E + EV + + SS +FI+ L + D
Sbjct: 4 KLLICATASINVI---NINHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN- 55
Query: 80 EWATWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
+++I D +L HI + + +++ P SANT+ KIA G+CDNLLT + Y K L
Sbjct: 56 ---LYDEIKDPLLNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTG-YQK-L 110
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPP---VSKRLACGDYGNG 184
F+ P MN MW NPF ++++ + + + P S ++ G Y N
Sbjct: 111 FIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNN 159
>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728
Length = 194
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 46 SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVI 105
S + E+R V TK++ I P + Y + ++ + G H+E+ RWADI I
Sbjct: 33 SFFKEIRVVMTKTAEDLI-----PAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCI 87
Query: 106 APLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 165
P +AN LG+ A G+ NL+ V A +N F P MN MWN R++ + + G
Sbjct: 88 IPATANILGQTANGVAMNLVATTVLAHPHNTIFF--PNMNDLMWNKTVVSRNIEQLRKDG 145
Query: 166 ISLIPPVS 173
+I PV
Sbjct: 146 HIVIEPVE 153
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|D Chain D, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|G Chain G, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|L Chain L, Epid H67n Complexed With Substrate Peptide Dsytc
Length = 181
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 24 RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATKSSLHFIDRAALPKDVIFYTDED 79
++L+ A+ S+ I N+ H E + EV + + SS +FI+ L + D
Sbjct: 4 KLLICATASINVI---NINHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN- 55
Query: 80 EWATWNKIGDSVLH-IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
+++I D +L+ I + + +++ P SANT+ KIA G+CDNLLT + Y K L
Sbjct: 56 ---LYDEIKDPLLNNINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTG-YQK-L 110
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPP---VSKRLACGDYGNG 184
F+ P MN MW NPF ++++ + + + P S ++ G Y N
Sbjct: 111 FIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNN 159
>pdb|3ZQU|A Chain A, Structure Of A Probable Aromatic Acid Decarboxylase
Length = 209
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 101 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY----NKPLFVAPAMNTFMWNNPFTER 156
+ MVI P S TL +A G C+NL I RA D +PL + P PF+
Sbjct: 96 NAMVICPCSTGTLSAVATGACNNL---IERAADVALKERRPLVLVP------REAPFSSI 146
Query: 157 HL---MSIDELGISLIP 170
HL + + LG ++P
Sbjct: 147 HLENMLKLSNLGAVILP 163
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 33.9 bits (76), Expect = 0.064, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P LA G
Sbjct: 321 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLASG 380
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 381 DYGMGTLTSP 390
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P L G
Sbjct: 321 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLESG 380
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 381 DYGMGTLTSP 390
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 31.6 bits (70), Expect = 0.31, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P L G
Sbjct: 321 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLNSG 380
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 381 DYGMGTLTSP 390
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P L G
Sbjct: 326 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSG 385
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 386 DYGMGTLTSP 395
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P L G
Sbjct: 326 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSG 385
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 386 DYGMGTLTSP 395
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 RAWDYNKPL--FVAPAMNTFMWNNPFTERHLMSIDELGISLIP---P-----VSKRLACG 179
R WD++ + V P ++T +N+ T+R +M LG ++P P L G
Sbjct: 326 RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPFGDPDIGWYFKAYLDSG 385
Query: 180 DYGNGAMAEP 189
DYG G + P
Sbjct: 386 DYGMGTLTSP 395
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 40 NLCHCF---SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSV----- 91
N+C F S EV + ++ L+ ID+ D+I+ T++ +W N I +
Sbjct: 5 NICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDE 64
Query: 92 LHIE 95
LH+E
Sbjct: 65 LHLE 68
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 40 NLCHCF---SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSV----- 91
N+C F S EV + ++ L+ ID+ D+I+ T++ +W N I +
Sbjct: 5 NICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDE 64
Query: 92 LHIE 95
LH+E
Sbjct: 65 LHLE 68
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 40 NLCHCF---SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSV----- 91
N+C F S EV + ++ L+ ID+ D+I+ T++ +W N I +
Sbjct: 5 NICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDE 64
Query: 92 LHIE 95
LH+E
Sbjct: 65 LHLE 68
>pdb|2XSN|A Chain A, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|B Chain B, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|C Chain C, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|D Chain D, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
Length = 343
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 16 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRA 53
V GL K + A G+ +G L HC SE E+RA
Sbjct: 213 VEFGLCKQNGEVKAYGAGLLSSYGELLHCLSEEPEIRA 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,463,666
Number of Sequences: 62578
Number of extensions: 248839
Number of successful extensions: 506
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 18
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)