BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028200
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205
++C CLE++ + I C+H FH C+ +W+E CP+CN ++
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 144 SKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQE 203
S + HV + +E CP C E+Y C H FH +CI W+E+ D+CPVC +
Sbjct: 6 SGTEEHVGSGLE----CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 204 M 204
+
Sbjct: 62 L 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 152 AVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
+ +E CP C EY + C H+FH C+ W+++S TCPVC
Sbjct: 35 GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 130 NVELESTKE----LEVELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLA 185
N ELE TKE ++ + + + H+ V+E E C C EY E + C H F
Sbjct: 33 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEA--VTLNCAHSFCSY 89
Query: 186 CIFEWMERSDTCPVCNQEM 204
CI EWM+R CP+C +++
Sbjct: 90 CINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 130 NVELESTKE----LEVELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLA 185
N ELE TKE ++ + + + H+ V+E E C C EY E + C H F
Sbjct: 22 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEA--VTLNCAHSFCSY 78
Query: 186 CIFEWMERSDTCPVCNQEM 204
CI EWM+R CP+C +++
Sbjct: 79 CINEWMKRKIECPICRKDI 97
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 130 NVELESTKE----LEVELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLA 185
N ELE TKE ++ + + + H+ V+E E C C EY E + C H F
Sbjct: 22 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEA--VTLNCAHSFCSY 78
Query: 186 CIFEWMERSDTCPVCNQEM 204
CI EWM+R CP+C +++
Sbjct: 79 CINEWMKRKIECPICRKDI 97
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQE 203
E+ +C C+ ++++ + C H FH C+ +W++ + TCP+C +
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205
C CL E D E R + +C H FH C+ W+ TCP+C ++
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 160 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
CP CLE D N + C H F CI W+ ++ TCP+C
Sbjct: 8 CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 142 ELSKSVHHVVAVIEEEDVCPTCLEEYD--AENPRII--TKCEHHFHLACIFEWMERSDTC 197
+++ +H + + CP C++ Y +N R+I T+C H F C+ + ++ ++TC
Sbjct: 57 KINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC 116
Query: 198 PVCNQEM 204
P C +++
Sbjct: 117 PTCRKKI 123
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 160 CPTCLEEYD--AENPRII--TKCEHHFHLACIFEWMERSDTCPVCNQEM 204
CP C++ Y +N R+I T+C H F C+ + ++ ++TCP C +++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 157 EDVCPTCLEEYDAENPRIITKCE-----HHFHLACIFEWMERSDT--CPVCNQEMIFD 207
+D+C C E D E+P +IT C H H AC+ +W++ SDT C +C E I +
Sbjct: 15 QDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 160 CPTCLEEYD--AENPRII--TKCEHHFHLACIFEWMERSDTCPVCNQEM 204
CP C++ Y +N R+I T+C H F C+ + ++ ++TCP C +++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 160 CPTCLEEYD--AENPRII--TKCEHHFHLACIFEWMERSDTCPVCNQEM 204
CP C++ Y +N R+I T+C H F C+ + ++ ++TCP C +++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 151 VAVIEEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERSDTCPVCNQEMI 205
+ ++ D C C E E+ ++ +C H FH C+ W+++++ CP+C Q+ +
Sbjct: 20 ICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 160 CPTCLEEYD--AENPRII--TKCEHHFHLACIFEWMERSDTCPVCNQEM 204
CP C++ Y +N R+I T+C H F C+ + ++ ++TCP C +++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 144 SKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQE 203
S S V + +EE+ C C++ +I C H F CI +W +R CP+C +
Sbjct: 3 SGSSGRVKQLTDEEECC-ICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57
Query: 204 M 204
M
Sbjct: 58 M 58
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEF 101
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEF 101
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNREWEF 103
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNREWEF 112
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 209
+C + LEE E+ R + C H FH C+ +W+ + CP+C ++ LP
Sbjct: 19 ICLSILEE--GEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNREWEF 95
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNREWEF 93
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW---MERSDTCPVC 200
++ E C CLE Y E +I +C H+F ACI W +ER CPVC
Sbjct: 12 LQVEASCSVCLE-YLKEP--VIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 CEHHFHLACIFEWMERSDTCPVCNQEMIF 206
C H FH CI W++ CP+ N+E F
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNREWEF 85
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 175 ITKCEHHFHLACIFEWMERSDTCPVCNQEM 204
I +C H F CI ++E S CP+C+ ++
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 175 ITKCEHHFHLACIFEWMERSDTCPVCNQEM 204
I +C H F CI ++E S CP+C+ ++
Sbjct: 27 IIECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 175 ITKCEHHFHLACIFEWMERSDTCPVCNQEM 204
I +C H F CI ++E S CP+C+ ++
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 160 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
C C + + +NP ++TKC H+F +C E + C +C+Q
Sbjct: 18 CFICRQAF--QNP-VVTKCRHYFCESCALEHFRATPRCYICDQ 57
>pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P
pdb|3OYY|B Chain B, Structure Of Pseudomonas Aeruginosa Elongation Factor P
Length = 191
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 80 PPVVQEICSNKSDPSVQTTPVPVQDTLGGNSQETSSKCDDLKEP 123
P V+Q+ NKS + + +++ L G ET K DD EP
Sbjct: 22 PWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEP 65
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 160 CPTCLEEYDAENPRIITK---CEHHFHLACIFEWMERSDTCPVCN 201
CP CLE D R++ C H H C E ++ CP+C+
Sbjct: 8 CPICLE--DIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 149 HVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS---DTCPVC 200
V ++EE +CP CL D + C H+F L CI + E S CP+C
Sbjct: 12 QFVNKLQEEVICPICL---DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 150 VVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACI---FEWMERSD---TCPVC 200
V+ +I+EE CP CLE + C H F ACI +E +D CPVC
Sbjct: 12 VLEMIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD---TCPVC 200
++EE +CP CL D + C H+F L CI + E S CP+C
Sbjct: 17 LQEEVICPICL---DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 150 VVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
V+ I++ C C E ++ II +C H++ CI +++ CP C
Sbjct: 15 VMKTIDDLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 160 CPTCLEEYDAENPRIITK---CEHHFHLACIFEWMERSDTCPVC 200
CP CLE D R++ C H H C E ++ CP+C
Sbjct: 8 CPICLE--DIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,329,516
Number of Sequences: 62578
Number of extensions: 216036
Number of successful extensions: 592
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 51
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)