Query 028200
Match_columns 212
No_of_seqs 231 out of 1973
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.7 5E-17 1.7E-21 109.9 6.3 56 155-210 12-67 (69)
2 1iym_A EL5; ring-H2 finger, ub 99.7 2.9E-17 1E-21 106.2 4.3 52 155-206 3-55 (55)
3 2ep4_A Ring finger protein 24; 99.7 1.3E-16 4.6E-21 109.2 6.0 54 155-208 13-66 (74)
4 1x4j_A Ring finger protein 38; 99.6 5.9E-17 2E-21 111.5 3.6 53 155-207 21-73 (75)
5 2ect_A Ring finger protein 126 99.6 1.4E-16 4.9E-21 110.2 5.0 55 155-209 13-67 (78)
6 2l0b_A E3 ubiquitin-protein li 99.6 1.8E-16 6.2E-21 113.3 4.5 51 155-205 38-88 (91)
7 2ecl_A Ring-box protein 2; RNF 99.6 1.9E-16 6.6E-21 110.9 4.3 53 155-207 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 5.3E-16 1.8E-20 100.1 4.5 51 155-205 3-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.6 1.1E-15 3.9E-20 112.3 4.7 53 155-207 35-102 (106)
10 3ng2_A RNF4, snurf, ring finge 99.6 1.1E-15 3.8E-20 103.6 4.2 55 155-209 8-66 (71)
11 2djb_A Polycomb group ring fin 99.6 2.9E-15 9.8E-20 102.2 6.0 55 155-211 13-67 (72)
12 2ea6_A Ring finger protein 4; 99.6 1.7E-15 6E-20 101.8 4.6 51 155-205 13-67 (69)
13 2d8s_A Cellular modulator of i 99.5 3.3E-15 1.1E-19 104.5 4.7 54 154-208 12-72 (80)
14 2xeu_A Ring finger protein 4; 99.5 2.8E-15 9.6E-20 99.3 3.3 53 156-208 2-58 (64)
15 1v87_A Deltex protein 2; ring- 99.5 7.6E-15 2.6E-19 108.5 5.4 52 156-207 24-95 (114)
16 2ecn_A Ring finger protein 141 99.5 4.3E-15 1.5E-19 100.6 2.7 50 155-208 13-62 (70)
17 2d8t_A Dactylidin, ring finger 99.5 7.2E-15 2.5E-19 99.9 3.7 49 155-206 13-61 (71)
18 1chc_A Equine herpes virus-1 r 99.5 9.7E-15 3.3E-19 98.2 4.1 49 155-205 3-51 (68)
19 2ct2_A Tripartite motif protei 99.5 2.8E-14 9.6E-19 100.4 6.3 54 155-208 13-70 (88)
20 4a0k_B E3 ubiquitin-protein li 99.5 2.3E-15 7.8E-20 112.5 0.4 53 155-207 46-113 (117)
21 2yur_A Retinoblastoma-binding 99.5 3.1E-14 1.1E-18 97.6 5.0 51 155-208 13-66 (74)
22 2ysl_A Tripartite motif-contai 99.5 4.2E-14 1.4E-18 96.2 5.6 51 155-208 18-71 (73)
23 2ecy_A TNF receptor-associated 99.5 3.4E-14 1.2E-18 95.1 4.5 51 155-208 13-64 (66)
24 2csy_A Zinc finger protein 183 99.5 5.3E-14 1.8E-18 98.0 5.0 48 155-205 13-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.4 2.5E-14 8.6E-19 109.6 3.1 49 155-206 51-99 (138)
26 1t1h_A Gspef-atpub14, armadill 99.4 1.4E-13 4.7E-18 95.0 4.8 51 155-208 6-57 (78)
27 3lrq_A E3 ubiquitin-protein li 99.4 5.7E-14 1.9E-18 101.9 2.8 52 155-208 20-72 (100)
28 2ct0_A Non-SMC element 1 homol 99.4 1.3E-13 4.5E-18 94.8 3.8 53 155-209 13-67 (74)
29 2ecw_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 94.0 5.7 51 155-208 17-73 (85)
30 2ysj_A Tripartite motif-contai 99.4 3.1E-13 1.1E-17 89.5 5.2 43 155-200 18-63 (63)
31 4ap4_A E3 ubiquitin ligase RNF 99.4 1.9E-13 6.5E-18 102.8 3.6 54 155-208 5-62 (133)
32 1g25_A CDK-activating kinase a 99.4 4.5E-13 1.5E-17 89.3 5.0 53 156-208 2-57 (65)
33 2egp_A Tripartite motif-contai 99.4 8.6E-14 2.9E-18 96.0 1.3 50 155-207 10-66 (79)
34 2ecv_A Tripartite motif-contai 99.4 3.9E-13 1.3E-17 93.6 4.7 51 155-208 17-73 (85)
35 2ckl_A Polycomb group ring fin 99.4 3.3E-13 1.1E-17 98.9 4.4 52 155-208 13-64 (108)
36 3ztg_A E3 ubiquitin-protein li 99.4 5.9E-13 2E-17 94.6 5.5 48 155-205 11-61 (92)
37 2y43_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 97.6 3.6 50 155-206 20-69 (99)
38 2ecj_A Tripartite motif-contai 99.3 5.7E-13 2E-17 86.5 3.7 43 155-200 13-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.3 6.6E-13 2.3E-17 99.7 4.4 49 155-206 50-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.3 7.9E-13 2.7E-17 99.3 3.3 55 154-208 69-127 (133)
41 1jm7_A BRCA1, breast cancer ty 99.3 1.1E-12 3.7E-17 96.3 3.0 50 156-208 20-72 (112)
42 3hct_A TNF receptor-associated 99.3 1.8E-12 6.2E-17 96.5 3.6 50 155-207 16-66 (118)
43 1z6u_A NP95-like ring finger p 99.3 2.5E-12 8.5E-17 100.0 4.4 50 155-207 76-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 99.2 2.3E-12 7.7E-17 95.6 3.1 50 156-208 22-72 (116)
45 3l11_A E3 ubiquitin-protein li 99.2 9E-13 3.1E-17 97.6 0.6 48 155-205 13-61 (115)
46 2kr4_A Ubiquitin conjugation f 99.2 6E-12 2.1E-16 88.6 4.6 51 155-208 12-62 (85)
47 2ckl_B Ubiquitin ligase protei 99.2 3.7E-12 1.3E-16 100.1 3.8 49 156-206 53-102 (165)
48 3knv_A TNF receptor-associated 99.2 4.5E-12 1.5E-16 97.6 3.7 51 155-208 29-80 (141)
49 1e4u_A Transcriptional repress 99.2 1.2E-11 4E-16 85.9 4.9 55 154-208 8-64 (78)
50 1wgm_A Ubiquitin conjugation f 99.2 1.5E-11 5E-16 89.0 5.2 51 155-208 20-71 (98)
51 2kre_A Ubiquitin conjugation f 99.2 1.5E-11 5.3E-16 89.2 4.8 51 155-208 27-77 (100)
52 1bor_A Transcription factor PM 99.2 2.5E-12 8.4E-17 83.5 0.3 48 155-208 4-51 (56)
53 2vje_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 82.5 3.7 48 155-205 6-56 (64)
54 2vje_B MDM4 protein; proto-onc 99.1 3.4E-11 1.2E-15 80.0 3.8 48 155-205 5-55 (63)
55 1jm7_B BARD1, BRCA1-associated 99.1 1E-11 3.4E-16 92.3 0.9 50 155-208 20-69 (117)
56 2y1n_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 105.6 4.2 49 157-208 332-381 (389)
57 4ic3_A E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 83.5 1.6 43 156-205 23-66 (74)
58 2yu4_A E3 SUMO-protein ligase 99.0 6.7E-11 2.3E-15 84.7 2.6 48 155-205 5-62 (94)
59 3hcs_A TNF receptor-associated 99.0 8.8E-11 3E-15 92.5 3.3 50 155-207 16-66 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 99.0 3.9E-10 1.3E-14 74.3 4.3 49 155-206 4-59 (60)
61 2c2l_A CHIP, carboxy terminus 99.0 2.9E-10 1E-14 95.3 3.6 51 155-208 206-257 (281)
62 3k1l_B Fancl; UBC, ring, RWD, 98.9 1.7E-10 6E-15 99.8 1.5 51 155-205 306-372 (381)
63 2ecg_A Baculoviral IAP repeat- 98.9 3.1E-10 1.1E-14 77.7 1.8 45 156-207 24-69 (75)
64 2f42_A STIP1 homology and U-bo 98.8 1.3E-09 4.5E-14 86.8 3.8 51 155-208 104-155 (179)
65 2ea5_A Cell growth regulator w 98.8 2.1E-09 7.3E-14 72.4 4.0 45 155-206 13-58 (68)
66 2yho_A E3 ubiquitin-protein li 98.8 9.1E-10 3.1E-14 76.4 1.1 43 156-205 17-60 (79)
67 2bay_A PRE-mRNA splicing facto 98.8 1.8E-09 6.2E-14 71.3 2.5 50 158-209 4-53 (61)
68 1wim_A KIAA0161 protein; ring 98.8 2.4E-09 8.1E-14 76.3 2.9 48 156-203 4-61 (94)
69 3htk_C E3 SUMO-protein ligase 98.8 2.8E-09 9.5E-14 89.3 3.1 51 155-207 179-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.6 8E-09 2.7E-13 90.3 1.2 44 155-205 293-337 (345)
71 3nw0_A Non-structural maintena 98.2 8.7E-07 3E-11 73.5 4.9 52 156-209 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 98.2 1.2E-06 4.2E-11 62.6 3.6 45 159-205 3-48 (101)
73 2ko5_A Ring finger protein Z; 97.2 0.00012 4.1E-09 51.5 1.8 48 156-208 27-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0018 6.1E-08 45.9 2.8 36 156-191 2-38 (101)
75 2lri_C Autoimmune regulator; Z 93.8 0.042 1.4E-06 36.1 2.9 46 156-204 11-60 (66)
76 2ysm_A Myeloid/lymphoid or mix 93.1 0.026 8.9E-07 40.7 1.0 39 154-192 4-42 (111)
77 2k16_A Transcription initiatio 92.0 0.032 1.1E-06 37.4 0.2 51 155-205 16-70 (75)
78 1f62_A Transcription factor WS 91.7 0.089 3.1E-06 32.4 2.1 44 159-202 2-49 (51)
79 2l5u_A Chromodomain-helicase-D 91.6 0.08 2.7E-06 34.1 1.8 46 155-203 9-58 (61)
80 1wil_A KIAA1045 protein; ring 90.0 0.18 6.1E-06 34.7 2.5 34 156-190 14-47 (89)
81 2yql_A PHD finger protein 21A; 89.5 0.038 1.3E-06 34.9 -1.2 46 154-202 6-55 (56)
82 1mm2_A MI2-beta; PHD, zinc fin 89.4 0.063 2.1E-06 34.6 -0.2 48 154-204 6-57 (61)
83 2puy_A PHD finger protein 21A; 88.2 0.046 1.6E-06 35.0 -1.5 48 155-205 3-54 (60)
84 1we9_A PHD finger family prote 88.2 0.26 9E-06 31.7 2.2 50 154-203 3-58 (64)
85 3m62_A Ubiquitin conjugation f 87.4 0.41 1.4E-05 46.7 3.9 50 156-208 890-940 (968)
86 1xwh_A Autoimmune regulator; P 87.0 0.12 4.2E-06 33.6 0.1 47 155-204 6-56 (66)
87 2e6r_A Jumonji/ARID domain-con 87.0 0.046 1.6E-06 38.3 -2.1 49 155-203 14-66 (92)
88 1fp0_A KAP-1 corepressor; PHD 87.0 0.31 1E-05 33.9 2.1 51 154-207 22-76 (88)
89 2vpb_A Hpygo1, pygopus homolog 86.3 0.61 2.1E-05 30.3 3.2 34 155-188 6-41 (65)
90 2cs3_A Protein C14ORF4, MY039 86.0 1.3 4.5E-05 30.1 4.7 39 155-193 13-52 (93)
91 3v43_A Histone acetyltransfera 85.9 1.1 3.7E-05 32.2 4.7 32 157-188 5-42 (112)
92 2lbm_A Transcriptional regulat 84.7 0.97 3.3E-05 34.1 4.0 46 154-202 60-116 (142)
93 2yt5_A Metal-response element- 84.0 0.33 1.1E-05 31.3 1.1 51 155-205 4-63 (66)
94 3i2d_A E3 SUMO-protein ligase 82.0 1.1 3.8E-05 39.0 3.8 48 159-208 251-302 (371)
95 2e6s_A E3 ubiquitin-protein li 81.5 0.19 6.5E-06 33.9 -0.9 44 159-202 28-76 (77)
96 2ku3_A Bromodomain-containing 81.4 1.2 4.2E-05 29.4 3.1 49 154-202 13-65 (71)
97 4fo9_A E3 SUMO-protein ligase 81.4 1.2 4.1E-05 38.7 3.8 49 158-208 216-268 (360)
98 1wep_A PHF8; structural genomi 80.1 0.95 3.2E-05 30.3 2.2 48 155-203 10-63 (79)
99 2lv9_A Histone-lysine N-methyl 80.0 0.46 1.6E-05 33.4 0.6 45 157-202 28-75 (98)
100 1joc_A EEA1, early endosomal a 79.8 1.6 5.4E-05 32.0 3.5 41 150-190 62-103 (125)
101 3v43_A Histone acetyltransfera 79.1 0.53 1.8E-05 33.8 0.7 44 159-202 63-111 (112)
102 2l43_A N-teminal domain from h 78.5 0.98 3.3E-05 31.1 1.9 52 155-206 23-78 (88)
103 3asl_A E3 ubiquitin-protein li 76.4 0.38 1.3E-05 31.7 -0.6 44 159-202 20-68 (70)
104 2xb1_A Pygopus homolog 2, B-ce 76.1 1.3 4.4E-05 31.5 2.0 47 158-204 4-62 (105)
105 1wem_A Death associated transc 75.8 2.2 7.6E-05 28.2 3.1 47 156-203 15-70 (76)
106 2kgg_A Histone demethylase jar 75.7 0.92 3.2E-05 27.9 1.0 43 159-201 4-52 (52)
107 3ql9_A Transcriptional regulat 75.6 2.5 8.5E-05 31.3 3.5 47 154-203 54-111 (129)
108 3ask_A E3 ubiquitin-protein li 74.8 0.61 2.1E-05 37.9 0.0 44 159-202 176-224 (226)
109 1weu_A Inhibitor of growth fam 74.1 1.4 4.6E-05 30.7 1.7 45 156-204 35-86 (91)
110 1z60_A TFIIH basal transcripti 73.6 0.84 2.9E-05 29.2 0.5 43 158-200 16-58 (59)
111 3t7l_A Zinc finger FYVE domain 72.5 3 0.0001 28.6 3.1 39 153-191 16-55 (90)
112 1z2q_A LM5-1; membrane protein 71.8 3.2 0.00011 28.0 3.1 38 153-190 17-55 (84)
113 1wen_A Inhibitor of growth fam 71.5 1.7 6E-05 28.6 1.6 45 156-204 15-66 (71)
114 1weo_A Cellulose synthase, cat 71.0 5.5 0.00019 27.5 4.1 50 156-205 15-69 (93)
115 2yw8_A RUN and FYVE domain-con 69.2 2.9 0.0001 28.1 2.4 38 153-190 15-53 (82)
116 2gmg_A Hypothetical protein PF 68.4 1.1 3.6E-05 32.1 0.0 30 174-208 69-98 (105)
117 3shb_A E3 ubiquitin-protein li 67.0 0.6 2.1E-05 31.4 -1.4 44 159-202 28-76 (77)
118 2kwj_A Zinc finger protein DPF 66.2 2.5 8.7E-05 30.2 1.7 33 158-190 2-41 (114)
119 1wev_A Riken cDNA 1110020M19; 65.8 1.4 4.9E-05 30.2 0.3 51 155-205 14-74 (88)
120 1zbd_B Rabphilin-3A; G protein 65.8 2.4 8.4E-05 31.5 1.6 34 155-188 53-88 (134)
121 1x4u_A Zinc finger, FYVE domai 65.8 4.5 0.00015 27.3 2.9 38 153-190 10-48 (84)
122 1wfk_A Zinc finger, FYVE domai 65.2 4.1 0.00014 27.8 2.6 38 154-191 6-44 (88)
123 2zet_C Melanophilin; complex, 62.6 4.1 0.00014 30.9 2.4 46 156-202 67-116 (153)
124 3o70_A PHD finger protein 13; 60.4 3.4 0.00012 26.9 1.3 47 155-202 17-66 (68)
125 2vnf_A ING 4, P29ING4, inhibit 59.5 1.2 4.1E-05 28.3 -1.0 43 156-202 9-58 (60)
126 1y02_A CARP2, FYVE-ring finger 58.8 1.2 4E-05 32.6 -1.3 48 155-202 17-65 (120)
127 2d8v_A Zinc finger FYVE domain 58.7 6.8 0.00023 25.5 2.5 33 154-190 5-38 (67)
128 1wew_A DNA-binding family prot 58.4 7 0.00024 25.9 2.7 48 156-204 15-73 (78)
129 3mjh_B Early endosome antigen 57.9 2.4 8.3E-05 23.9 0.2 14 156-169 4-17 (34)
130 4gne_A Histone-lysine N-methyl 57.7 3.9 0.00013 29.2 1.4 43 155-202 13-61 (107)
131 1vfy_A Phosphatidylinositol-3- 53.4 8.9 0.0003 25.0 2.5 33 158-190 12-45 (73)
132 2ri7_A Nucleosome-remodeling f 51.4 6.4 0.00022 30.0 1.8 47 155-202 6-58 (174)
133 3c6w_A P28ING5, inhibitor of g 50.6 2.3 7.8E-05 26.9 -0.8 43 156-202 8-57 (59)
134 2apo_B Ribosome biogenesis pro 50.2 9.4 0.00032 24.3 2.1 19 194-212 18-36 (60)
135 2o35_A Hypothetical protein DU 49.4 7 0.00024 27.5 1.5 11 182-192 43-53 (105)
136 3fyb_A Protein of unknown func 49.4 7.1 0.00024 27.4 1.5 11 182-192 42-52 (104)
137 1dvp_A HRS, hepatocyte growth 49.0 8 0.00027 30.7 2.1 35 156-190 160-195 (220)
138 3a1b_A DNA (cytosine-5)-methyl 48.3 11 0.00037 28.8 2.6 35 156-193 78-114 (159)
139 3zyq_A Hepatocyte growth facto 48.1 10 0.00035 30.3 2.6 36 156-191 163-199 (226)
140 2a20_A Regulating synaptic mem 47.9 11 0.00038 23.9 2.2 48 155-202 7-59 (62)
141 1wee_A PHD finger family prote 46.0 5.4 0.00018 26.0 0.5 47 156-203 15-66 (72)
142 3mpx_A FYVE, rhogef and PH dom 45.4 4.4 0.00015 35.2 0.0 51 154-204 372-430 (434)
143 2jvx_A NF-kappa-B essential mo 44.6 5.3 0.00018 21.5 0.2 11 195-205 4-14 (28)
144 2ysm_A Myeloid/lymphoid or mix 43.8 8 0.00027 27.2 1.2 45 159-203 56-104 (111)
145 2pv0_B DNA (cytosine-5)-methyl 43.5 19 0.00064 31.5 3.7 44 156-202 92-147 (386)
146 2cu8_A Cysteine-rich protein 2 43.3 16 0.00054 23.4 2.5 40 157-206 9-48 (76)
147 2kwj_A Zinc finger protein DPF 42.5 6.8 0.00023 27.9 0.6 46 159-204 60-109 (114)
148 3vhs_A ATPase wrnip1; zinc fin 41.7 6.5 0.00022 20.6 0.3 10 196-205 8-17 (29)
149 1iml_A CRIP, cysteine rich int 40.9 11 0.00038 24.1 1.5 45 156-204 26-71 (76)
150 1zfo_A LAsp-1; LIM domain, zin 40.5 8.3 0.00028 20.8 0.6 27 158-186 4-30 (31)
151 2dj7_A Actin-binding LIM prote 40.1 21 0.00073 23.3 2.8 40 156-205 14-53 (80)
152 6rxn_A Rubredoxin; electron tr 39.6 6 0.00021 23.8 -0.0 8 196-203 32-39 (46)
153 1wd2_A Ariadne-1 protein homol 38.8 2.5 8.6E-05 26.9 -2.0 37 157-193 6-47 (60)
154 2aus_D NOP10, ribosome biogene 38.5 13 0.00044 23.7 1.4 19 194-212 17-35 (60)
155 1x61_A Thyroid receptor intera 36.4 37 0.0013 21.2 3.5 10 159-168 7-16 (72)
156 2co8_A NEDD9 interacting prote 35.9 24 0.00081 23.1 2.5 40 156-205 14-53 (82)
157 2jmo_A Parkin; IBR, E3 ligase, 35.4 2.5 8.6E-05 28.3 -2.5 15 177-191 55-69 (80)
158 1x63_A Skeletal muscle LIM-pro 35.3 38 0.0013 21.7 3.5 41 157-206 15-55 (82)
159 2pk7_A Uncharacterized protein 34.9 8.3 0.00028 25.2 0.1 16 190-205 4-19 (69)
160 1wyh_A SLIM 2, skeletal muscle 34.7 32 0.0011 21.4 3.0 40 157-205 5-44 (72)
161 1x62_A C-terminal LIM domain p 34.1 22 0.00076 22.9 2.1 39 156-205 14-52 (79)
162 4ayb_P DNA-directed RNA polyme 31.6 2.6 9E-05 25.5 -2.6 13 195-207 24-36 (48)
163 1m3v_A FLIN4, fusion of the LI 31.5 30 0.001 24.4 2.7 50 157-206 32-81 (122)
164 3o7a_A PHD finger protein 13 v 31.4 14 0.00046 22.4 0.6 41 162-202 8-51 (52)
165 1x4l_A Skeletal muscle LIM-pro 31.4 25 0.00085 22.1 2.0 40 157-205 5-46 (72)
166 2xjy_A Rhombotin-2; oncoprotei 31.3 39 0.0013 23.8 3.3 49 157-205 29-77 (131)
167 2rsd_A E3 SUMO-protein ligase 29.8 12 0.0004 24.1 0.1 45 156-202 9-64 (68)
168 3pwf_A Rubrerythrin; non heme 29.5 23 0.00077 27.1 1.7 24 173-203 139-162 (170)
169 1x68_A FHL5 protein; four-and- 29.4 44 0.0015 21.2 3.0 41 157-205 5-46 (76)
170 2lcq_A Putative toxin VAPC6; P 28.9 15 0.00053 27.5 0.7 27 173-205 133-159 (165)
171 2l3k_A Rhombotin-2, linker, LI 28.9 26 0.00089 24.8 1.9 35 157-192 36-70 (123)
172 2ct7_A Ring finger protein 31; 28.6 4.5 0.00015 27.4 -2.2 22 173-194 44-65 (86)
173 1x4k_A Skeletal muscle LIM-pro 28.4 44 0.0015 20.7 2.8 39 158-205 6-44 (72)
174 3kqi_A GRC5, PHD finger protei 28.3 36 0.0012 22.1 2.4 45 159-203 11-61 (75)
175 2jny_A Uncharacterized BCR; st 27.5 7.8 0.00027 25.2 -1.1 9 196-204 30-38 (67)
176 3f6q_B LIM and senescent cell 27.4 24 0.00082 21.9 1.3 41 157-206 11-51 (72)
177 1lv3_A Hypothetical protein YA 27.1 22 0.00075 23.2 1.1 13 195-207 10-22 (68)
178 3c5k_A HD6, histone deacetylas 27.0 29 0.001 24.5 1.8 24 157-183 24-47 (109)
179 1g47_A Pinch protein; LIM doma 26.0 56 0.0019 20.5 3.0 42 156-206 10-51 (77)
180 2dar_A PDZ and LIM domain prot 25.4 45 0.0015 21.9 2.5 38 157-205 25-62 (90)
181 1x64_A Alpha-actinin-2 associa 24.6 45 0.0015 21.9 2.4 37 158-205 26-62 (89)
182 2d8x_A Protein pinch; LIM doma 23.9 25 0.00086 21.9 0.9 37 158-205 6-42 (70)
183 1x4i_A Inhibitor of growth pro 23.5 45 0.0015 21.5 2.1 45 156-204 5-56 (70)
184 2kdx_A HYPA, hydrogenase/ureas 23.4 29 0.00098 24.7 1.2 25 173-203 74-99 (119)
185 2kpi_A Uncharacterized protein 23.3 5.7 0.0002 24.8 -2.3 7 159-165 12-18 (56)
186 2jmi_A Protein YNG1, ING1 homo 23.1 20 0.00067 24.6 0.3 44 155-202 24-75 (90)
187 2csz_A Synaptotagmin-like prot 23.1 40 0.0014 22.4 1.8 33 155-187 23-57 (76)
188 1lko_A Rubrerythrin all-iron(I 22.5 25 0.00085 27.3 0.8 10 194-203 171-180 (191)
189 1wig_A KIAA1808 protein; LIM d 22.3 66 0.0023 20.2 2.8 37 158-205 6-42 (73)
190 2cor_A Pinch protein; LIM doma 21.6 71 0.0024 20.5 2.9 39 156-205 14-52 (79)
191 1a7i_A QCRP2 (LIM1); LIM domai 21.0 30 0.001 22.3 0.9 38 158-205 8-45 (81)
192 2d8z_A Four and A half LIM dom 20.7 76 0.0026 19.5 2.8 36 158-204 6-41 (70)
193 2jne_A Hypothetical protein YF 20.7 31 0.0011 24.1 0.9 40 158-205 33-72 (101)
194 1nyp_A Pinch protein; LIM doma 20.5 61 0.0021 19.7 2.3 39 157-206 5-43 (66)
195 2cuq_A Four and A half LIM dom 20.1 68 0.0023 20.3 2.5 37 158-205 16-52 (80)
196 2egq_A FHL1 protein; LIM domai 20.0 76 0.0026 19.9 2.7 41 157-206 15-58 (77)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=109.93 Aligned_cols=56 Identities=27% Similarity=0.722 Sum_probs=49.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPV 210 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~~~ 210 (212)
++...|+||++.|..+...+.++|||.||..||.+|++++.+||+||+.+...-+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 45667999999998878888999999999999999999999999999998766553
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=2.9e-17 Score=106.18 Aligned_cols=52 Identities=27% Similarity=0.760 Sum_probs=46.1
Q ss_pred cCCCccccccccccCCCCeEEcC-CCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
+++..|+||++.|..++....++ |||.||..||.+|++++.+||+||+.+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 45667999999998877777776 99999999999999999999999998753
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=109.24 Aligned_cols=54 Identities=30% Similarity=0.838 Sum_probs=48.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
+++..|+||++.|........++|+|.||..||.+|++.+.+||+||+.+..-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456679999999988888888899999999999999999999999999886544
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-17 Score=111.48 Aligned_cols=53 Identities=25% Similarity=0.785 Sum_probs=47.7
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~ 207 (212)
++...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45678999999998888788899999999999999999999999999988643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1.4e-16 Score=110.18 Aligned_cols=55 Identities=33% Similarity=0.769 Sum_probs=49.0
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 209 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~~ 209 (212)
++...|+||++.|......+.++|+|.||..||.+|++++.+||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 4566899999999888888889999999999999999999999999999876553
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=113.27 Aligned_cols=51 Identities=35% Similarity=0.805 Sum_probs=46.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
+++..|+|||+.|..++..+.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456789999999988888888999999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-16 Score=110.85 Aligned_cols=53 Identities=28% Similarity=0.772 Sum_probs=42.6
Q ss_pred cCCCccccccccccC-----------CC-CeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDA-----------EN-PRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~-----------~~-~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~ 207 (212)
.+++.|+||++.|.. ++ ...+++|+|.||..||.+||+++.+||+||+.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356668888888843 33 344556999999999999999999999999988654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=5.3e-16 Score=100.07 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=44.1
Q ss_pred cCCCccccccccccC-CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
.++..|+||++.|.. ++..+.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345679999999944 456788999999999999999999999999999764
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.58 E-value=1.1e-15 Score=112.33 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=45.3
Q ss_pred cCCCccccccccccCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~ 207 (212)
.+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+.+.++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 4577899999999753 2467789999999999999999999999999987653
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=1.1e-15 Score=103.56 Aligned_cols=55 Identities=24% Similarity=0.638 Sum_probs=47.4
Q ss_pred cCCCccccccccccC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCC
Q 028200 155 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 209 (212)
Q Consensus 155 ee~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~~ 209 (212)
+++..|+||++.|.. +...+.++|||.||..||.+|++++.+||+||+.+..++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 456779999999854 3556889999999999999999999999999999876654
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=102.21 Aligned_cols=55 Identities=27% Similarity=0.514 Sum_probs=47.3
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 211 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~~~~ 211 (212)
++...|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+..++++.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 456679999999865 4555699999999999999999999999999998887764
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=101.82 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=44.2
Q ss_pred cCCCccccccccccC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
.+...|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 556779999999854 344578999999999999999999999999999875
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=104.48 Aligned_cols=54 Identities=39% Similarity=0.873 Sum_probs=46.1
Q ss_pred ccCCCccccccccccCCCCeEEcCCC-----CcccHHHHHHHHhcCC--CCCcccccccCCC
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCE-----HHFHLACIFEWMERSD--TCPVCNQEMIFDL 208 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~~~~--tCPvCr~~l~~~~ 208 (212)
..+++.|.|||++|..++.+ +++|. |.||..||.+||+.++ +||+||+.+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 35567899999999887776 58996 9999999999998764 8999999997765
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.53 E-value=2.8e-15 Score=99.33 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=45.4
Q ss_pred CCCccccccccccC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 156 EEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
++..|+||++.|.. +...+.++|||.||..||.+|++++.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 35679999999854 345678999999999999999999999999999987654
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=7.6e-15 Score=108.55 Aligned_cols=52 Identities=31% Similarity=0.652 Sum_probs=41.8
Q ss_pred CCCccccccccccCCC---------------CeEEcCCCCcccHHHHHHHH-----hcCCCCCcccccccCC
Q 028200 156 EEDVCPTCLEEYDAEN---------------PRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQEMIFD 207 (212)
Q Consensus 156 e~~~C~ICle~~~~~~---------------~~~~l~C~H~FH~~CI~~Wl-----~~~~tCPvCr~~l~~~ 207 (212)
.++.|+|||+.|.... ...+++|+|.||..||.+|| +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3457999999995532 34478999999999999999 4567999999987543
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-15 Score=100.57 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=44.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.+...|+||++.+.. +.++|||.||..||.+|++++.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456679999999865 67899999999999999999999999999887554
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.2e-15 Score=99.95 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=43.0
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
.+...|+||++.|.. .+.++|||.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 456679999999855 5678999999999999999999999999998753
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=9.7e-15 Score=98.19 Aligned_cols=49 Identities=33% Similarity=0.826 Sum_probs=42.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
+++..|+||++.+. ++.+.++|||.||..||.+|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 34667999999985 35678999999999999999999999999999874
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=100.42 Aligned_cols=54 Identities=24% Similarity=0.566 Sum_probs=45.9
Q ss_pred cCCCccccccccccCCCC-eEEcCCCCcccHHHHHHHHhcC---CCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERS---DTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~~---~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|...+. .+.++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 556789999999976553 6788999999999999999886 78999999886653
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.49 E-value=2.3e-15 Score=112.49 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=1.6
Q ss_pred cCCCccccccccccCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~ 207 (212)
.+++.|+||++.|... ..+..++|+|.||..||.+||+++.+||+||+++.++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4567899999999642 1334468999999999999999999999999987654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=97.63 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=42.4
Q ss_pred cCCCccccccccccCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCr~~l~~~~ 208 (212)
+++..|+||++.|.. .+.++ |||.||..||.+|++.+ .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 456689999999864 45688 99999999999999876 68999999865444
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=96.25 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=43.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. .+.++|||.||..||.+|++ ...+||+||+.+..++
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999874 56779999999999999997 4568999999987654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=95.14 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=42.7
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHh-cCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.+.. .+.++|||.||..||.+|++ .+.+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456789999999864 34589999999999999994 5678999999987664
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.3e-14 Score=97.96 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=42.4
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
++...|+||++.|.. .++++|||.||..||.+|++...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 446689999999855 567999999999999999999999999999875
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=2.5e-14 Score=109.56 Aligned_cols=49 Identities=35% Similarity=0.782 Sum_probs=43.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
+++..|+||++.|.. .++++|||.||..||.+|++++.+||+||+.+..
T Consensus 51 ~~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 455679999999865 5678999999999999999999999999998753
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=1.4e-13 Score=94.99 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~~~~ 208 (212)
.++..|+||++.|.. .++++|||.||..||.+|++. +.+||+||+.+..++
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456789999999865 567899999999999999987 789999999886554
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=5.7e-14 Score=101.90 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=43.4
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~l~~~~ 208 (212)
+++..|+||++.|.. ++.+++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 456679999999964 44349999999999999999988 69999999886544
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=94.75 Aligned_cols=53 Identities=21% Similarity=0.610 Sum_probs=44.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC--CCCCcccccccCCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPVCNQEMIFDLP 209 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPvCr~~l~~~~~ 209 (212)
+..+.|+||++.|..+ .....|+|.||..||.+||+.+ .+||+||+.+.++.+
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 4566799999999764 3455899999999999999887 899999999987654
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=3.2e-13 Score=94.02 Aligned_cols=51 Identities=37% Similarity=0.724 Sum_probs=43.3
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc------CCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 456679999999865 457899999999999999988 678999999886553
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=89.49 Aligned_cols=43 Identities=37% Similarity=0.851 Sum_probs=36.9
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVC 200 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvC 200 (212)
+++..|+||++.|.. .+.++|||.||..||.+|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 556789999999864 45679999999999999998 45689998
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.37 E-value=1.9e-13 Score=102.80 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=45.9
Q ss_pred cCCCccccccccccC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 356679999999854 355588999999999999999999999999999886544
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=4.5e-13 Score=89.31 Aligned_cols=53 Identities=21% Similarity=0.585 Sum_probs=41.7
Q ss_pred CCCccccccc-cccCCC-CeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028200 156 EEDVCPTCLE-EYDAEN-PRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle-~~~~~~-~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~~~~ 208 (212)
++..|+||++ .|.... ..+.++|||.||..||.+|+.+ +.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3567999999 675432 3356899999999999999765 468999999886554
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=8.6e-14 Score=96.04 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=42.6
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-------CCCCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-------SDTCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-------~~tCPvCr~~l~~~ 207 (212)
+++..|+||++.|.. .+.++|||.||..||.+|++. ..+||+||+.+..+
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 567789999999865 446899999999999999987 67899999988654
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=93.57 Aligned_cols=51 Identities=31% Similarity=0.668 Sum_probs=43.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc------CCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456779999999865 456799999999999999987 789999999887544
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=3.3e-13 Score=98.94 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=44.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
+++..|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSC
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccC
Confidence 456779999999864 4444599999999999999999999999999887653
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=94.64 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=40.9
Q ss_pred cCCCccccccccccCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCr~~l~ 205 (212)
+++..|+||++.|.. .+.++ |||.||..||.+|+..+ .+||+||+.+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 567789999999864 45778 99999999999999765 58999999874
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=97.56 Aligned_cols=50 Identities=24% Similarity=0.648 Sum_probs=42.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
++...|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345679999999865 44445999999999999999999999999998764
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.7e-13 Score=86.46 Aligned_cols=43 Identities=44% Similarity=0.983 Sum_probs=36.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHH---hcCCCCCcc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---ERSDTCPVC 200 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl---~~~~tCPvC 200 (212)
++...|+||++.|.. .+.++|||.||..||.+|+ +++.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999965 3568999999999999995 456789998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=99.66 Aligned_cols=49 Identities=27% Similarity=0.465 Sum_probs=42.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~ 206 (212)
++...|+||++.|.. .+.++|||.||..||..|++... +||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456689999999975 56789999999999999998654 99999998865
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=7.9e-13 Score=99.34 Aligned_cols=55 Identities=24% Similarity=0.630 Sum_probs=46.8
Q ss_pred ccCCCccccccccccC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 154 IEEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.++...|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3566779999999854 345578999999999999999999999999999987654
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.1e-12 Score=96.35 Aligned_cols=50 Identities=28% Similarity=0.718 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC---CCCcccccccCCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD---TCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~---tCPvCr~~l~~~~ 208 (212)
+...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+..++
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 45579999999854 34589999999999999998764 8999999886554
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.27 E-value=1.8e-12 Score=96.55 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=43.0
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~~ 207 (212)
++...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+..+
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 556789999999865 46789999999999999998875 999999988654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=99.96 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=43.0
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~~ 207 (212)
++...|+||++.|.. .+.++|||.||..||.+|++... +||+||+.+..+
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 356689999999865 56689999999999999998765 899999998765
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=95.56 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~~~~ 208 (212)
++..|+||++.|.. .+.++|||.||..||.+|++. ..+||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 45679999999865 566899999999999999987 679999999886543
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.24 E-value=9e-13 Score=97.57 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=41.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~ 205 (212)
+++..|+||++.|.. .+.++|||.||..||.+|++. ..+||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 456679999999864 567799999999999999976 678999999875
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=6e-12 Score=88.64 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=44.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.++..|+||++.|.. .++++|||.|+..||.+|+..+.+||+||+.+..++
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 457789999999976 677889999999999999999999999999886543
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=3.7e-12 Score=100.08 Aligned_cols=49 Identities=27% Similarity=0.735 Sum_probs=41.4
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIF 206 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~~ 206 (212)
+...|+||++.|.. ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45579999999864 4555699999999999999987 7889999998853
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.22 E-value=4.5e-12 Score=97.57 Aligned_cols=51 Identities=20% Similarity=0.560 Sum_probs=43.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. .+.++|||.||..||.+|++... +||+||+++.+++
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 566789999999865 46789999999999999998765 8999999875543
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=1.2e-11 Score=85.88 Aligned_cols=55 Identities=20% Similarity=0.477 Sum_probs=41.8
Q ss_pred ccCCCccccccccccCCCCeEE-cCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028200 154 IEEEDVCPTCLEEYDAENPRII-TKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 208 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~~~~ 208 (212)
.+++..|+||++.+...+..+. ++|||.||..||.+|++. ...||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3567789999998865443322 359999999999999853 578999999875443
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.20 E-value=1.5e-11 Score=89.02 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=45.2
Q ss_pred cCCCccccccccccCCCCeEEcCCC-CcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.++..||||++.|.. .++++|| |.|+..||.+|+..+.+||+||+.+..++
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 457789999999976 6788999 99999999999999999999999987654
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.18 E-value=1.5e-11 Score=89.20 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=44.9
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.++..||||++.|.. +++++|||.|+..||.+|+..+.+||+||+.+..++
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 457789999999976 667889999999999999998899999999987654
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=2.5e-12 Score=83.52 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=40.2
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. .+.++|||.||..||..| ..+||+||+.+..+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 456789999999975 457899999999999885 678999999986654
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=1.2e-11 Score=82.48 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=40.1
Q ss_pred cCCCccccccccccCCCCeEEc--CCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
+++..|+||++.+.. .+.+ +|||. |+..|+..|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345679999998654 3444 99999 899999999999999999999874
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=3.4e-11 Score=80.02 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=39.7
Q ss_pred cCCCccccccccccCCCCeEEc--CCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
+....|+||++.... ..++ +|||. |+..|+.+|.+++.+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345679999997643 3344 99998 999999999999899999999874
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=1e-11 Score=92.32 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=40.6
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
++...|+||++.|.. ++.+++|||.||..||..|+. ..||+||+.+...+
T Consensus 20 ~~~~~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHhhC--ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 456779999999854 443339999999999999998 78999999885543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=4.6e-11 Score=105.58 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=42.3
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHh-cCCCCCcccccccCCC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDL 208 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCr~~l~~~~ 208 (212)
...|+||++.+.. .+.++|||.||..||..|++ .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4579999998854 67899999999999999998 7889999999876543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=2.1e-11 Score=83.48 Aligned_cols=43 Identities=28% Similarity=0.654 Sum_probs=37.5
Q ss_pred CCCccccccccccCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
++..|+||++.+.. .+.++|||. ||..||..| .+||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45679999998755 678899999 999999999 88999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.7e-11 Score=84.72 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=39.5
Q ss_pred cCCCccccccccccCCCCeEEc-CCCCcccHHHHHHHHhcC------CCCCc--cccc-cc
Q 028200 155 EEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERS------DTCPV--CNQE-MI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~------~tCPv--Cr~~-l~ 205 (212)
.++..||||++.|.. .+++ .|||.|+..||.+|+..+ .+||+ |++. +.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 567789999999865 5566 599999999999999764 48999 9866 43
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.03 E-value=8.8e-11 Score=92.53 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=42.5
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~~ 207 (212)
++...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+..+
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 566789999999865 46689999999999999998754 999999988654
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.98 E-value=3.9e-10 Score=74.25 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=39.0
Q ss_pred cCCCccccccccccCCCCeEEcCCC--C---cccHHHHHHHHhc--CCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCE--H---HFHLACIFEWMER--SDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~--H---~FH~~CI~~Wl~~--~~tCPvCr~~l~~ 206 (212)
+++..|.||+++. ++++ ++||. | .||..||.+|+.. +.+||+|+..+.+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5677899999974 3344 57864 4 9999999999965 5789999998765
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=2.9e-10 Score=95.31 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=42.8
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~l~~~~ 208 (212)
.+...|+||++.|.. +++++|||.||..||.+|+..+. +||+||+.+...+
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 356689999999976 67889999999999999998754 5999999886443
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.93 E-value=1.7e-10 Score=99.82 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=39.4
Q ss_pred cCCCccccccccccC-CCCe-E---EcCCCCcccHHHHHHHHhcC-----------CCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDA-ENPR-I---ITKCEHHFHLACIFEWMERS-----------DTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~-~~~~-~---~l~C~H~FH~~CI~~Wl~~~-----------~tCPvCr~~l~ 205 (212)
++...|+||++.+.. +... . .++|+|.||..||++||+.. ++||+||+.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345579999999865 3211 1 25799999999999999763 57999999874
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.1e-10 Score=77.73 Aligned_cols=45 Identities=29% Similarity=0.692 Sum_probs=36.5
Q ss_pred CCCccccccccccCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCcccccccCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIFD 207 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~~~ 207 (212)
+...|+||++.+.. .+.++|||. ||..|+.. ...||+||+.+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 34569999998754 567899999 99999964 47899999988543
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.85 E-value=1.3e-09 Score=86.84 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=43.3
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 208 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~l~~~~ 208 (212)
.+...||||++.|.. +++++|||.|+..||.+|+..+ .+||+|++.+...+
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 467789999999976 6778999999999999999875 46999999886543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.1e-09 Score=72.38 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=37.4
Q ss_pred cCCCccccccccccCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
++...|.||++.... .+.++|||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456679999997654 778999999 99999984 5789999998753
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.80 E-value=9.1e-10 Score=76.35 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=36.4
Q ss_pred CCCccccccccccCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
++..|+||++.+.. .+.++|||. ||..|+..| ..||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34569999998754 778999999 999999988 38999999764
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.80 E-value=1.8e-09 Score=71.25 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=42.5
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCC
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 209 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~~ 209 (212)
..|+|+++.+.. +++..++||.|...||.+||+++++||+.++.+..++.
T Consensus 4 ~~CpIs~~~m~d--PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS--EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC--CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 569999999864 44433899999999999999999999999999877664
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.4e-09 Score=76.34 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=38.8
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC--------CCCCc--cccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--------DTCPV--CNQE 203 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--------~tCPv--Cr~~ 203 (212)
+...|+||++.+.......+++|||.||..||..|++.+ -+||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999765545556899999999999999642 37999 9987
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.8e-09 Score=89.33 Aligned_cols=51 Identities=31% Similarity=0.639 Sum_probs=41.9
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC--CCCCc--ccccccCC
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPV--CNQEMIFD 207 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPv--Cr~~l~~~ 207 (212)
..+..||||++.|.. |++.+.|||.|+..||.+|++.+ .+||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 456689999999954 56667999999999999999865 47999 99977543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.60 E-value=8e-09 Score=90.28 Aligned_cols=44 Identities=23% Similarity=0.629 Sum_probs=38.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
+++..|+||++.+.. .+.++|||. ||..||..| ..||+||+.+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 356689999998865 677899999 999999998 78999999874
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.24 E-value=8.7e-07 Score=73.55 Aligned_cols=52 Identities=21% Similarity=0.607 Sum_probs=42.8
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCC--CCCcccccccCCCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD--TCPVCNQEMIFDLP 209 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCr~~l~~~~~ 209 (212)
.-..|.||.+....+ ..+..|+|.||..|+.+|++.+. +||.|+..+..+.|
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 356799999998764 44556999999999999998754 89999999877654
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.16 E-value=1.2e-06 Score=62.62 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=35.9
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCccccccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 205 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~l~ 205 (212)
.|++|--.+.. -.++.+|.|+||.+|+..|.++ .++||.|+..+.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 37788766533 3567899999999999999865 589999998763
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.19 E-value=0.00012 Score=51.53 Aligned_cols=48 Identities=25% Similarity=0.668 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCCeEEcCC-CCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.-..|-.||-+... +..| .|.+|..|+...|.+++.||+|++.|..+-
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 44569999987654 5557 799999999999999999999999887653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=45.87 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=27.5
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHH-HH
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFE-WM 191 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~-Wl 191 (212)
++..|+||++.|...-....+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3567999998754333344599999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.82 E-value=0.042 Score=36.12 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=35.1
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l 204 (212)
....|.||.+ .++.+..-.|...||..|+...|... =.||.|....
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456999986 35556666799999999999888653 3699997654
No 76
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.08 E-value=0.026 Score=40.71 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.1
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHh
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 192 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 192 (212)
..+++.|.||.+.-+.++-+....|+..||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 356788999998654444466678999999999988764
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.99 E-value=0.032 Score=37.38 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=35.1
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~l~ 205 (212)
++...|.||......+.-+..-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345579999887653333444568999999999765432 235999987653
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.69 E-value=0.089 Score=32.36 Aligned_cols=44 Identities=23% Similarity=0.607 Sum_probs=31.5
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 202 (212)
.|.||...-..++-+..-.|...||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998765555556666799999999997544332 24999965
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.57 E-value=0.08 Score=34.08 Aligned_cols=46 Identities=26% Similarity=0.707 Sum_probs=33.4
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 203 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~ 203 (212)
..++.|.||... ++.+..-.|...||..|+..-|.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456679999873 444555668999999999986543 2369999764
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.04 E-value=0.18 Score=34.69 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=23.7
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHH
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW 190 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W 190 (212)
.++.|.|| +.|..+...-.=-|+-+||..|+.+-
T Consensus 14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 56679998 45555442222237999999999995
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.49 E-value=0.038 Score=34.92 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=33.1
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 202 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 202 (212)
...++.|.||... ++.+..-.|...||..|+.+-|... =.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3557789999874 4556666799999999998655432 24888854
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.38 E-value=0.063 Score=34.59 Aligned_cols=48 Identities=17% Similarity=0.444 Sum_probs=33.8
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 204 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l 204 (212)
+..++.|.||.+ .++.+..-.|...||..|+..-|... =.||.|+...
T Consensus 6 d~~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345667999986 34445556689999999998655432 2599997654
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.25 E-value=0.046 Score=35.04 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=34.6
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l~ 205 (212)
..++.|.||... ++.+..-.|...||..|+.+-|... =.||.|...+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 346679999873 4556666799999999998655432 25999976554
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.15 E-value=0.26 Score=31.65 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=34.4
Q ss_pred ccCCCccccccccccCCCCe-EEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028200 154 IEEEDVCPTCLEEYDAENPR-IITKCEHHFHLACIFEWME-----RSDTCPVCNQE 203 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCr~~ 203 (212)
.++...|+||...+..+... ..-.|...||..|+.--.. ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35667799999988544333 3356899999999865332 23469999653
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.37 E-value=0.41 Score=46.66 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCCeEEcCCC-CcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
++..|||=++.+.. +++++-| +.|-...|.+||.+..+||+=|+.+...+
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 45679999998866 6778887 68999999999999999999999886543
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.04 E-value=0.12 Score=33.65 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=34.0
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 204 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l 204 (212)
..++.|.||... ++.+..-.|...||..|+.+-|... =.||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 456789999873 4556666799999999998655432 2599996643
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.04 E-value=0.046 Score=38.28 Aligned_cols=49 Identities=16% Similarity=0.521 Sum_probs=34.7
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 203 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~ 203 (212)
.+...|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456679999987554445556679999999999754432 1249999764
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.01 E-value=0.31 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.520 Sum_probs=36.6
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccccCC
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMIFD 207 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l~~~ 207 (212)
.+.++.|.||... ++.+..-.|.-.||..|+.+=|... =.||.|+..-..+
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 3556789999974 4556666789999999998766442 2599998654443
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.25 E-value=0.61 Score=30.31 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=24.6
Q ss_pred cCCCccccccccccCCCCeEE-c-CCCCcccHHHHH
Q 028200 155 EEEDVCPTCLEEYDAENPRII-T-KCEHHFHLACIF 188 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~-l-~C~H~FH~~CI~ 188 (212)
+....|++|...|..+...+. - .|.-.||..|+-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 455679999999876655544 4 699999999974
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.97 E-value=1.3 Score=30.13 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=29.4
Q ss_pred cCCCccccccccccCCCCeEEcC-CCCcccHHHHHHHHhc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMER 193 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~ 193 (212)
.....|.+|.|.++..+-+.... =.|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34567999999998766443211 1799999999999976
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.95 E-value=1.1 Score=32.15 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=24.1
Q ss_pred CCccccccccc------cCCCCeEEcCCCCcccHHHHH
Q 028200 157 EDVCPTCLEEY------DAENPRIITKCEHHFHLACIF 188 (212)
Q Consensus 157 ~~~C~ICle~~------~~~~~~~~l~C~H~FH~~CI~ 188 (212)
...|.||+..- ..++.+....|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45699999752 334556667899999999995
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.71 E-value=0.97 Score=34.09 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=33.9
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-----------CCCCCcccc
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----------SDTCPVCNQ 202 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----------~~tCPvCr~ 202 (212)
+..++.|.||-+ .++.+..-.|...||..||.+=|.+ .=.||+|+.
T Consensus 60 Dg~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 455778999997 3554555679999999999976531 235999975
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=84.04 E-value=0.33 Score=31.31 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=34.6
Q ss_pred cCCCccccccccccC--CCCeEEcCCCCcccHHHHHHHHh-------cCCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWME-------RSDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~-------~~~tCPvCr~~l~ 205 (212)
.++..|.||...... +..+..-.|.-.||..|+..-|. ..=.|+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999986532 34444466999999999886442 1235998876543
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.98 E-value=1.1 Score=39.02 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=34.6
Q ss_pred ccccccccccCCCCeEEcCCCCc--ccHHHHHHHHhcC--CCCCcccccccCCC
Q 028200 159 VCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 208 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~--~tCPvCr~~l~~~~ 208 (212)
.|||=+..+ ..|.....|.|. |-+.=+....++. -.||+|.+.+.+.+
T Consensus 251 ~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 251 QCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp BCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred cCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 799877766 457888899998 6665555554443 46999999876544
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.54 E-value=0.19 Score=33.94 Aligned_cols=44 Identities=18% Similarity=0.559 Sum_probs=30.4
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCCcccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCr~ 202 (212)
.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68999865444554555679999999999854432 125888864
No 96
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=81.40 E-value=1.2 Score=29.35 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=32.1
Q ss_pred ccCCCccccccccc--cCCCCeEEcCCCCcccHHHHHHHHhc--CCCCCcccc
Q 028200 154 IEEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWMER--SDTCPVCNQ 202 (212)
Q Consensus 154 ~ee~~~C~ICle~~--~~~~~~~~l~C~H~FH~~CI~~Wl~~--~~tCPvCr~ 202 (212)
..+.+.|.||...- ..+..+..-.|.-.||..|+..-+.- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45677899998764 23333444568999999999753211 224888854
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.36 E-value=1.2 Score=38.66 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=35.9
Q ss_pred CccccccccccCCCCeEEcCCCCc--ccHHHHHHHHhcC--CCCCcccccccCCC
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 208 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~--~tCPvCr~~l~~~~ 208 (212)
..|||=+..+ ..|.....|.|. |-+.=+....++. -.||+|.+.+.+++
T Consensus 216 L~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 3699887776 447788899999 7766666655544 46999999886654
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.08 E-value=0.95 Score=30.34 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=31.2
Q ss_pred cCCCccccccccccCCCC-eEEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028200 155 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 203 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCr~~ 203 (212)
.+...| ||...++.+.. +..-.|...||..|+.--.. ..-.||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344456 99988753333 33456899999999853221 23469999864
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.01 E-value=0.46 Score=33.44 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhc---CCCCCcccc
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER---SDTCPVCNQ 202 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCr~ 202 (212)
...| ||-.....+.-+..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 89877665554555678999999998653322 236999974
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.77 E-value=1.6 Score=32.03 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=28.8
Q ss_pred ccccccCCCccccccccccCCCCe-EEcCCCCcccHHHHHHH
Q 028200 150 VVAVIEEEDVCPTCLEEYDAENPR-IITKCEHHFHLACIFEW 190 (212)
Q Consensus 150 ~~~~~ee~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~W 190 (212)
.+..+.+...|.+|...|..-... ..-.||++||..|....
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 334445567899999999754332 23569999999996654
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.10 E-value=0.53 Score=33.84 Aligned_cols=44 Identities=25% Similarity=0.647 Sum_probs=30.6
Q ss_pred ccccccccc-cCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028200 159 VCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~-~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 202 (212)
.|.||...- ..+..+..-.|...||..|+.+-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888753 333445556699999999997655432 36999975
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.47 E-value=0.98 Score=31.11 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=33.7
Q ss_pred cCCCccccccccc--cCCCCeEEcCCCCcccHHHHHHHHhc--CCCCCcccccccC
Q 028200 155 EEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWMER--SDTCPVCNQEMIF 206 (212)
Q Consensus 155 ee~~~C~ICle~~--~~~~~~~~l~C~H~FH~~CI~~Wl~~--~~tCPvCr~~l~~ 206 (212)
++++.|.||.... ..+..+..-.|.-.||..|+..-+.- .=.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 5567899999753 22233334568899999999754311 2359999765543
No 103
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=76.44 E-value=0.38 Score=31.72 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=28.2
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCCcccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCr~ 202 (212)
.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677754333333444568999999999854433 225998875
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.11 E-value=1.3 Score=31.50 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=31.9
Q ss_pred CccccccccccCCCCeEE-c-CCCCcccHHHHHHHHh----------cCCCCCcccccc
Q 028200 158 DVCPTCLEEYDAENPRII-T-KCEHHFHLACIFEWME----------RSDTCPVCNQEM 204 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~-l-~C~H~FH~~CI~~Wl~----------~~~tCPvCr~~l 204 (212)
..|+||...|..+...+. - .|.-.||..|+.--.. ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 359999999865444433 3 6899999999852210 234699997654
No 105
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.82 E-value=2.2 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=31.2
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHH---------hcCCCCCccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---------ERSDTCPVCNQE 203 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl---------~~~~tCPvCr~~ 203 (212)
+...| ||...+..+.-+..-.|...||..|+.--. ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34457 898887643333345689999999984211 235679999764
No 106
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.67 E-value=0.92 Score=27.89 Aligned_cols=43 Identities=16% Similarity=0.393 Sum_probs=28.5
Q ss_pred ccccccccccCCCCeEE-c-CCCCcccHHHHHHHH----hcCCCCCccc
Q 028200 159 VCPTCLEEYDAENPRII-T-KCEHHFHLACIFEWM----ERSDTCPVCN 201 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~-l-~C~H~FH~~CI~~Wl----~~~~tCPvCr 201 (212)
.|.||...+..+...+. - .|.-.||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 37899888865544443 3 588899999975322 2445688885
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.64 E-value=2.5 Score=31.31 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=32.4
Q ss_pred ccCCCccccccccccCCCCeEEcCCCCcccHHHHHHHH------hc-----CCCCCccccc
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM------ER-----SDTCPVCNQE 203 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl------~~-----~~tCPvCr~~ 203 (212)
+..++.|.||-+. ++.+..-.|-..||..||.+=+ +. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456679999973 4434445689999999999742 21 1369999653
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=74.76 E-value=0.61 Score=37.92 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=27.9
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhc--C---CCCCcccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER--S---DTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--~---~tCPvCr~ 202 (212)
.|.||...-..+..+..-.|...||..|+.+=|.. . =.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 68888875444555666679999999999854433 1 24999975
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.07 E-value=1.4 Score=30.70 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~~l 204 (212)
+...| ||..... +.-+..=. |. ..||..||. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44557 9988653 33222223 54 689999997 433 23599998754
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.65 E-value=0.84 Score=29.18 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=29.4
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVC 200 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 200 (212)
..|--|+..|.....-....|+++|+.+|=.---+.=..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999988532223357899999999944322444679988
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.50 E-value=3 Score=28.65 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=28.6
Q ss_pred cccCCCccccccccccCCCC-eEEcCCCCcccHHHHHHHH
Q 028200 153 VIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWM 191 (212)
Q Consensus 153 ~~ee~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl 191 (212)
.+.+...|.+|...|..-.. ...-.||++||..|...++
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34556679999999965433 3345699999999987654
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.80 E-value=3.2 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=28.1
Q ss_pred cccCCCccccccccccCCCCeE-EcCCCCcccHHHHHHH
Q 028200 153 VIEEEDVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEW 190 (212)
Q Consensus 153 ~~ee~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~W 190 (212)
.+.+...|.+|...|..-.... .-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456678999999997644333 3569999999997665
No 113
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.51 E-value=1.7 Score=28.58 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=27.8
Q ss_pred CCCccccccccccCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~~l 204 (212)
+...| ||..... +.-+..=. |. ..||..||. |.. +-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44567 8988643 33111223 55 689999997 433 23599997754
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.01 E-value=5.5 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCCccccccccccC---CCCe-EEcCCCCcccHHHHHH-HHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDA---ENPR-IITKCEHHFHLACIFE-WMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~---~~~~-~~l~C~H~FH~~CI~~-Wl~~~~tCPvCr~~l~ 205 (212)
...+|.||=+++.. ++.- ..-.|+--.|..|+.- +-+.+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45679999998632 2322 2345888889999854 3355788999998775
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.19 E-value=2.9 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=27.6
Q ss_pred cccCCCccccccccccCCCCeE-EcCCCCcccHHHHHHH
Q 028200 153 VIEEEDVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEW 190 (212)
Q Consensus 153 ~~ee~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~W 190 (212)
.+.+...|.+|...|..-.... .-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455668999999997543322 3569999999997654
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.40 E-value=1.1 Score=32.11 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028200 174 IITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 208 (212)
Q Consensus 174 ~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~~~ 208 (212)
.+..||+.| .+-+.....||.|+.+.+..+
T Consensus 69 ~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred ChhhCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 356699999 122344578999998776543
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=66.96 E-value=0.6 Score=31.44 Aligned_cols=44 Identities=23% Similarity=0.586 Sum_probs=27.9
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC-----CCCCcccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-----DTCPVCNQ 202 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-----~tCPvCr~ 202 (212)
.|.||...-..+..+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543333334445689999999998765431 25888875
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.24 E-value=2.5 Score=30.25 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred Cccccccccc-------cCCCCeEEcCCCCcccHHHHHHH
Q 028200 158 DVCPTCLEEY-------DAENPRIITKCEHHFHLACIFEW 190 (212)
Q Consensus 158 ~~C~ICle~~-------~~~~~~~~l~C~H~FH~~CI~~W 190 (212)
+.|.||+..- +.++.+....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5699998754 12344556779999999999765
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.85 E-value=1.4 Score=30.17 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred cCCCccccccccccC--CCCeEEcCCCCcccHHHHHHHHhc--------CCCCCccccccc
Q 028200 155 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMER--------SDTCPVCNQEMI 205 (212)
Q Consensus 155 ee~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~--------~~tCPvCr~~l~ 205 (212)
+....|.||...-.. +..+..-.|...||..|+..-|.. .=.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 346679999986432 233334568999999999876542 235999976553
No 120
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.83 E-value=2.4 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=26.0
Q ss_pred cCCCcccccccccc-C-CCCeEEcCCCCcccHHHHH
Q 028200 155 EEEDVCPTCLEEYD-A-ENPRIITKCEHHFHLACIF 188 (212)
Q Consensus 155 ee~~~C~ICle~~~-~-~~~~~~l~C~H~FH~~CI~ 188 (212)
..+..|.||...|. . +.......|.|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46678999999993 3 3345567899999999854
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.79 E-value=4.5 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=27.0
Q ss_pred cccCCCccccccccccCCCCeE-EcCCCCcccHHHHHHH
Q 028200 153 VIEEEDVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEW 190 (212)
Q Consensus 153 ~~ee~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~W 190 (212)
.+.+...|.+|...|..-...- .-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3455668999999996543322 3469999999996543
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.17 E-value=4.1 Score=27.84 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.4
Q ss_pred ccCCCccccccccccCCCCeE-EcCCCCcccHHHHHHHH
Q 028200 154 IEEEDVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEWM 191 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl 191 (212)
.++...|.+|...|..-.... .-.||++||..|....+
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 355667999999997644333 34599999999976543
No 123
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.57 E-value=4.1 Score=30.94 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCCccccccccc--cCCCCeEEcCCCCcccHHHHHHHHhcCC--CCCcccc
Q 028200 156 EEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWMERSD--TCPVCNQ 202 (212)
Q Consensus 156 e~~~C~ICle~~--~~~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCr~ 202 (212)
.+..|.||+..| ..+.......|.|.+|..|= .|+.... .|=+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467899999986 44455677889999999996 2443221 3666654
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.38 E-value=3.4 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=30.4
Q ss_pred cCCCccccccccccCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCr~ 202 (212)
.+...| ||...+..+.-+..-.|...||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445568 9988776333334456899999999864221 2246888864
No 125
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.52 E-value=1.2 Score=28.32 Aligned_cols=43 Identities=28% Similarity=0.566 Sum_probs=25.4
Q ss_pred CCCccccccccccCCCCeEEcC--CC-CcccHHHHHHHHhcC----CCCCcccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMERS----DTCPVCNQ 202 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~~----~tCPvCr~ 202 (212)
+...| ||..... +.-+..-. |. ..||..||. |... -.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9988643 32122223 44 689999997 4332 35888864
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=58.84 E-value=1.2 Score=32.65 Aligned_cols=48 Identities=17% Similarity=0.486 Sum_probs=30.0
Q ss_pred cCCCccccccccccCCCC-eEEcCCCCcccHHHHHHHHhcCCCCCcccc
Q 028200 155 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVCNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~ 202 (212)
.+...|.+|-..|..-.. -..-.||.+||..|....+.....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 445679999999965322 233569999999997776655566766643
No 127
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.71 E-value=6.8 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=25.7
Q ss_pred ccCCCccccccccccCCCCeEEcCC-CCcccHHHHHHH
Q 028200 154 IEEEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEW 190 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~W 190 (212)
.++..-|.||.++ -.+..+.| +-+||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 3556679999996 23778889 899999997773
No 128
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.38 E-value=7 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCCeEEc--CCCCcccHHHHHHHHh---------cCCCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWME---------RSDTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~---------~~~tCPvCr~~l 204 (212)
+...| ||-.....+.=+..- .|...||..|+.---. .+-.||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34457 898874444323334 6999999999853211 234699997654
No 129
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.85 E-value=2.4 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=10.1
Q ss_pred CCCccccccccccC
Q 028200 156 EEDVCPTCLEEYDA 169 (212)
Q Consensus 156 e~~~C~ICle~~~~ 169 (212)
+...||||+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 45679999887754
No 130
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.75 E-value=3.9 Score=29.18 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=27.2
Q ss_pred cCCCccccccccccCCCCeEEc--CCCCcccHHHHHHHHhcC----CCCCcccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMERS----DTCPVCNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 202 (212)
++++.|.||.+ .++.+..- .|...||..|+. |... =.||.|.-
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 56777999984 23322223 488999999997 5432 23775543
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.42 E-value=8.9 Score=25.02 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.1
Q ss_pred CccccccccccCCCCeE-EcCCCCcccHHHHHHH
Q 028200 158 DVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEW 190 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~W 190 (212)
..|.+|...|..-.... .-.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 57999999996543322 3469999999997543
No 132
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.40 E-value=6.4 Score=29.95 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=30.8
Q ss_pred cCCCccccccccccCCC-CeEEcCCCCcccHHHHHHHH-----hcCCCCCcccc
Q 028200 155 EEEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~Wl-----~~~~tCPvCr~ 202 (212)
++...| ||...++.+. -+..-.|...||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 445668 9998875333 33345689999999995321 12346999975
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.57 E-value=2.3 Score=26.90 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=25.9
Q ss_pred CCCccccccccccCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQ 202 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~ 202 (212)
+...| ||..... +.-+..-. |. ..||..||. |.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 9988653 32122223 55 699999997 433 235888865
No 134
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=50.21 E-value=9.4 Score=24.31 Aligned_cols=19 Identities=21% Similarity=0.816 Sum_probs=16.3
Q ss_pred CCCCCcccccccCCCCCCC
Q 028200 194 SDTCPVCNQEMIFDLPVDY 212 (212)
Q Consensus 194 ~~tCPvCr~~l~~~~~~~~ 212 (212)
+..||.|......-.|..|
T Consensus 18 k~~CP~CG~~T~~~hParf 36 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKF 36 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCC
T ss_pred cccCcCCCCcCCCCCCCCC
Confidence 6779999999988888877
No 135
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.44 E-value=7 Score=27.51 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 028200 182 FHLACIFEWME 192 (212)
Q Consensus 182 FH~~CI~~Wl~ 192 (212)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 136
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=49.35 E-value=7.1 Score=27.45 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 028200 182 FHLACIFEWME 192 (212)
Q Consensus 182 FH~~CI~~Wl~ 192 (212)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.04 E-value=8 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=25.6
Q ss_pred CCCccccccccccCCCCeE-EcCCCCcccHHHHHHH
Q 028200 156 EEDVCPTCLEEYDAENPRI-ITKCEHHFHLACIFEW 190 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~W 190 (212)
+...|.+|...|..-.... .-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3468999999996543333 3459999999997654
No 138
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=48.35 E-value=11 Score=28.82 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCCccccccccccCCCCeEEc--CCCCcccHHHHHHHHhc
Q 028200 156 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER 193 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~ 193 (212)
.+.-|.||-+. ++.+..- .|...||..||..++..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 35569999863 3333333 58899999999999854
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.13 E-value=10 Score=30.34 Aligned_cols=36 Identities=14% Similarity=0.426 Sum_probs=26.5
Q ss_pred CCCccccccccccCCCCe-EEcCCCCcccHHHHHHHH
Q 028200 156 EEDVCPTCLEEYDAENPR-IITKCEHHFHLACIFEWM 191 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl 191 (212)
+...|.+|...|..-... ..-.||++||..|-..++
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 456899999999654332 345699999999976543
No 140
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=47.86 E-value=11 Score=23.91 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=33.5
Q ss_pred cCCCcccccccc-ccCCCCeEEcCCCCcccHHHHHHHHhcCC----CCCcccc
Q 028200 155 EEEDVCPTCLEE-YDAENPRIITKCEHHFHLACIFEWMERSD----TCPVCNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~-~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCr~ 202 (212)
.+..+|.||+-. |.++.-.+..-|.-.||..|=-+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456789999976 66776677777888888888666653333 3666655
No 141
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.96 E-value=5.4 Score=25.99 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCCccccccccccCCCC-eEEcCCCCcccHHHHHHHH----hcCCCCCccccc
Q 028200 156 EEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWM----ERSDTCPVCNQE 203 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl----~~~~tCPvCr~~ 203 (212)
+...| ||...+..+.. +..-.|...||..|+.--. ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34468 79887655433 3345689999999986432 123469999764
No 142
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.36 E-value=4.4 Score=35.20 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred ccCCCccccccccccCCCC-eEEcCCCCcccHHHHHHHHhc-------CCCCCcccccc
Q 028200 154 IEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMER-------SDTCPVCNQEM 204 (212)
Q Consensus 154 ~ee~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~-------~~tCPvCr~~l 204 (212)
+.+...|.+|...|..-.. ..+-.||++||..|-..++.. ...|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456689999999864321 223569999999999877521 24577775544
No 143
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.63 E-value=5.3 Score=21.46 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.9
Q ss_pred CCCCccccccc
Q 028200 195 DTCPVCNQEMI 205 (212)
Q Consensus 195 ~tCPvCr~~l~ 205 (212)
.+||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888887664
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.83 E-value=8 Score=27.22 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=29.7
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 203 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~ 203 (212)
.|.||...-.....+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765443334445678999999999864433 2358888653
No 145
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.55 E-value=19 Score=31.47 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=31.7
Q ss_pred CCCccccccccccCCCCeEEc--CCCCcccHHHHHHHHhc----------CCCCCcccc
Q 028200 156 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER----------SDTCPVCNQ 202 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~----------~~tCPvCr~ 202 (212)
.+.-|.||-+. ++.+..- .|...||..||..++-+ .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34569999873 4445555 79999999999999933 135878754
No 146
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.28 E-value=16 Score=23.38 Aligned_cols=40 Identities=18% Similarity=0.415 Sum_probs=26.2
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
...|+.|-+.+..++.+. --+..||..| -+|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCC
Confidence 456888888876544332 3467788766 347788777653
No 147
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.49 E-value=6.8 Score=27.92 Aligned_cols=46 Identities=15% Similarity=0.462 Sum_probs=31.6
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028200 159 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 204 (212)
Q Consensus 159 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~l 204 (212)
.|.||...-..+..+..-.|...||..|+.+=|... =.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588888754445555556799999999998644331 2488886644
No 148
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=41.66 E-value=6.5 Score=20.61 Aligned_cols=10 Identities=60% Similarity=1.235 Sum_probs=7.1
Q ss_pred CCCccccccc
Q 028200 196 TCPVCNQEMI 205 (212)
Q Consensus 196 tCPvCr~~l~ 205 (212)
.||+|.+.|.
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4888877654
No 149
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.92 E-value=11 Score=24.14 Aligned_cols=45 Identities=7% Similarity=-0.036 Sum_probs=27.2
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccH-HHHHHHHhcCCCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHL-ACIFEWMERSDTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~-~CI~~Wl~~~~tCPvCr~~l 204 (212)
+-..|.+|...+..+. ....=+..||. .|..+- ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 4457888887775542 22334667777 576553 345588886543
No 150
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.53 E-value=8.3 Score=20.81 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=17.2
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHH
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLAC 186 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~C 186 (212)
+.|+.|-..+-..+.+ +-=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 4588888776443322 23478888877
No 151
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.13 E-value=21 Score=23.26 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
....|+-|-+.+..++.+.. =+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34569999888765554433 367888766 45778877764
No 152
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.61 E-value=6 Score=23.78 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=6.3
Q ss_pred CCCccccc
Q 028200 196 TCPVCNQE 203 (212)
Q Consensus 196 tCPvCr~~ 203 (212)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999763
No 153
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.85 E-value=2.5 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.645 Sum_probs=24.6
Q ss_pred CCccccccccccCC---CCeEEcC--CCCcccHHHHHHHHhc
Q 028200 157 EDVCPTCLEEYDAE---NPRIITK--CEHHFHLACIFEWMER 193 (212)
Q Consensus 157 ~~~C~ICle~~~~~---~~~~~l~--C~H~FH~~CI~~Wl~~ 193 (212)
...||-|.-.++.. +...... |++.|+..|..+|-.-
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34588887766432 2233334 8999999999998644
No 154
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=38.51 E-value=13 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=15.7
Q ss_pred CCCCCcccccccCCCCCCC
Q 028200 194 SDTCPVCNQEMIFDLPVDY 212 (212)
Q Consensus 194 ~~tCPvCr~~l~~~~~~~~ 212 (212)
+..||+|........|..|
T Consensus 17 k~~CP~CG~~t~~ahParf 35 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPPRF 35 (60)
T ss_dssp SSBCTTTCSBCEESSCCCC
T ss_pred cccCcCCCCccCCCCCCCC
Confidence 5679999998888888776
No 155
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.42 E-value=37 Score=21.17 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=5.3
Q ss_pred cccccccccc
Q 028200 159 VCPTCLEEYD 168 (212)
Q Consensus 159 ~C~ICle~~~ 168 (212)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4555655543
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.94 E-value=24 Score=23.07 Aligned_cols=40 Identities=25% Similarity=0.520 Sum_probs=25.9
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
....|..|-..+...+.+. -=+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcC
Confidence 3557999988875444332 2477888777 34777777664
No 157
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.44 E-value=2.5 Score=28.32 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHH
Q 028200 177 KCEHHFHLACIFEWM 191 (212)
Q Consensus 177 ~C~H~FH~~CI~~Wl 191 (212)
.|+|.||..|-..|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999999883
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.30 E-value=38 Score=21.75 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
...|+.|-..+..++..+ ..=+..||..| -+|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccCC
Confidence 346888888776544332 23467788766 347777776643
No 159
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.90 E-value=8.3 Score=25.19 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=7.6
Q ss_pred HHhcCCCCCccccccc
Q 028200 190 WMERSDTCPVCNQEMI 205 (212)
Q Consensus 190 Wl~~~~tCPvCr~~l~ 205 (212)
||-.--.||+|+..+.
T Consensus 4 ~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 4 KLLDILACPICKGPLK 19 (69)
T ss_dssp CGGGTCCCTTTCCCCE
T ss_pred HHHhheeCCCCCCcCe
Confidence 3333344555555443
No 160
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.74 E-value=32 Score=21.41 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
...|..|-..+...... +.-=+..||..| -+|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCC
Confidence 34588887776543222 333467777666 34777776654
No 161
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.15 E-value=22 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=26.4
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
....|..|-+.+.. . .+.--+..||..|. +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45679999888764 2 23345788888773 4778877653
No 162
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.62 E-value=2.6 Score=25.54 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.3
Q ss_pred CCCCcccccccCC
Q 028200 195 DTCPVCNQEMIFD 207 (212)
Q Consensus 195 ~tCPvCr~~l~~~ 207 (212)
-.||+|...+..+
T Consensus 24 IrCpyCGyrii~K 36 (48)
T 4ayb_P 24 VRCPYCGYKIIFM 36 (48)
T ss_dssp SCCTTTCCSCEEC
T ss_pred cccCccCcEEEEE
Confidence 4699998876543
No 163
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.49 E-value=30 Score=24.38 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=34.0
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
-.+|..|-..+..........=+..||..|..+-+..+..|-.|.+.|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 44688888777421111233457789999998877666689999887753
No 164
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.44 E-value=14 Score=22.36 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=25.2
Q ss_pred cccccccCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcccc
Q 028200 162 TCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQ 202 (212)
Q Consensus 162 ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCr~ 202 (212)
||...+..+.-+..-.|.-.||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776655323333456899999999864221 2346888864
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.43 E-value=25 Score=22.07 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=25.2
Q ss_pred CCccccccccccC--CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 157 EDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 157 ~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
...|..|-+.+.. +... +.--+..||..| -+|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCC
Confidence 4568888887764 2222 233577888766 35778877764
No 166
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.27 E-value=39 Score=23.84 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
-.+|..|-..+..........=|..||..|..+-+.....|..|.+.|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 3456666555532111112233455666665553333235666666553
No 167
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=29.78 E-value=12 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=26.8
Q ss_pred CCCccccccccccCCCCeEEc---CCCCcccHHHHHHH---Hh-----cCCCCCcccc
Q 028200 156 EEDVCPTCLEEYDAENPRIIT---KCEHHFHLACIFEW---ME-----RSDTCPVCNQ 202 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l---~C~H~FH~~CI~~W---l~-----~~~tCPvCr~ 202 (212)
+...| ||-.....+. .|.- .|...||..|+--- .+ .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34456 8976554443 3333 48889999997310 01 1245999975
No 168
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.47 E-value=23 Score=27.11 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=15.6
Q ss_pred eEEcCCCCcccHHHHHHHHhcCCCCCccccc
Q 028200 173 RIITKCEHHFHLACIFEWMERSDTCPVCNQE 203 (212)
Q Consensus 173 ~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~ 203 (212)
.++..|||++-. .--..||+|...
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 445668887651 234589999753
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.38 E-value=44 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.522 Sum_probs=25.6
Q ss_pred CCccccccccccC-CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 157 EDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 157 ~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
...|+.|-..+.. +....+.--+..||..| -+|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 3468888887764 11122333577888877 34777877664
No 170
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.95 E-value=15 Score=27.55 Aligned_cols=27 Identities=19% Similarity=0.529 Sum_probs=18.9
Q ss_pred eEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 173 RIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 173 ~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..+..|||.|-.. .....||.|..++.
T Consensus 133 y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 133 YVCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EEESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred EECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 5567899998643 22347999988753
No 171
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.91 E-value=26 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=17.5
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHh
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 192 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 192 (212)
-..|.+|-..+..+.. ....=+..||..|..+.+.
T Consensus 36 CF~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc
Confidence 3456666655533322 2222355666666666553
No 172
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.58 E-value=4.5 Score=27.37 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=15.9
Q ss_pred eEEcCCCCcccHHHHHHHHhcC
Q 028200 173 RIITKCEHHFHLACIFEWMERS 194 (212)
Q Consensus 173 ~~~l~C~H~FH~~CI~~Wl~~~ 194 (212)
+....|++.||..|-..|=+.+
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTT
T ss_pred eEeCCCCCccccccCCchhhcC
Confidence 3344599999999988884443
No 173
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.43 E-value=44 Score=20.73 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=22.3
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|+.|-+.+...+..+ .-=+..||..| -+|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEE-EECcCeecccC--------CcccccCCccC
Confidence 45777777765433222 22466777655 34667766654
No 174
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.33 E-value=36 Score=22.07 Aligned_cols=45 Identities=27% Similarity=0.454 Sum_probs=28.7
Q ss_pred ccccccccccCCCCe-EEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028200 159 VCPTCLEEYDAENPR-IITKCEHHFHLACIFEWME-----RSDTCPVCNQE 203 (212)
Q Consensus 159 ~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCr~~ 203 (212)
+--||...+..+... ..-.|.-.||..|+.---. ..-.||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344898877543333 3356899999999953221 13469999754
No 175
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.49 E-value=7.8 Score=25.19 Aligned_cols=9 Identities=11% Similarity=-0.138 Sum_probs=4.1
Q ss_pred CCCcccccc
Q 028200 196 TCPVCNQEM 204 (212)
Q Consensus 196 tCPvCr~~l 204 (212)
.|+-|+..+
T Consensus 30 vC~~c~~~Y 38 (67)
T 2jny_A 30 VNERLNLAY 38 (67)
T ss_dssp EETTTTEEE
T ss_pred EcCCCCccc
Confidence 355554433
No 176
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.38 E-value=24 Score=21.89 Aligned_cols=41 Identities=17% Similarity=0.488 Sum_probs=27.3
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
...|..|-..+..++.+ +..=+..||..|. +|-.|++.|..
T Consensus 11 ~~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCCC
Confidence 45699998887655433 2234677887774 57788877643
No 177
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.06 E-value=22 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.984 Sum_probs=9.0
Q ss_pred CCCCcccccccCC
Q 028200 195 DTCPVCNQEMIFD 207 (212)
Q Consensus 195 ~tCPvCr~~l~~~ 207 (212)
..||+|++.+.+.
T Consensus 10 ~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 10 VNCPTCGKTVVWG 22 (68)
T ss_dssp EECTTTCCEEECS
T ss_pred CcCCCCCCccccc
Confidence 3588888877653
No 178
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.02 E-value=29 Score=24.54 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=19.1
Q ss_pred CCccccccccccCCCCeEEcCCCCccc
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFH 183 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH 183 (212)
...|..|+.. ++..+.|.|||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 4569999874 55678899999997
No 179
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.99 E-value=56 Score=20.54 Aligned_cols=42 Identities=17% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
....|+.|-+.+...+..+ ..=+..||..| -+|-.|++.|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCC
Confidence 3557999988876433332 22467788766 347778776643
No 180
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.40 E-value=45 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
...|+.|-..+.. . .+.--+..||..| .+|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccC--------CccCCCCCCCC
Confidence 4457777776632 2 2223466677655 34666666554
No 181
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.56 E-value=45 Score=21.92 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=19.7
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|..|-+.+.. . .+.--+..||..| .+|-.|++.|.
T Consensus 26 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 26 PLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCC
Confidence 447777666543 1 1223456666655 23666666554
No 182
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.86 E-value=25 Score=21.92 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=20.3
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|..|-+.+.. .. +.--+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCC
Confidence 457777766642 22 2223566676653 4666666554
No 183
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.46 E-value=45 Score=21.47 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCccccccccccCCCCeEEcCC---CCcccHHHHHHHHhc----CCCCCcccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKC---EHHFHLACIFEWMER----SDTCPVCNQEM 204 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C---~H~FH~~CI~~Wl~~----~~tCPvCr~~l 204 (212)
+...| ||.... .+.-+..-.| ...||..||. |.. .-.||.|+..+
T Consensus 5 ~~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 34445 687753 2321112233 2789999997 322 23599997643
No 184
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.44 E-value=29 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.0
Q ss_pred eEEcCCCCcccHHHHHHHHhcCC-CCCccccc
Q 028200 173 RIITKCEHHFHLACIFEWMERSD-TCPVCNQE 203 (212)
Q Consensus 173 ~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~ 203 (212)
.....|||.|-.. .... .||.|...
T Consensus 74 ~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 3456688888752 3456 79999765
No 185
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.31 E-value=5.7 Score=24.84 Aligned_cols=7 Identities=43% Similarity=1.398 Sum_probs=3.2
Q ss_pred ccccccc
Q 028200 159 VCPTCLE 165 (212)
Q Consensus 159 ~C~ICle 165 (212)
.||+|..
T Consensus 12 ~CP~c~~ 18 (56)
T 2kpi_A 12 ACPACHA 18 (56)
T ss_dssp CCSSSCS
T ss_pred eCCCCCC
Confidence 4444443
No 186
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.12 E-value=20 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=25.4
Q ss_pred cCCCccccccccccCCCCeEEcCCC---CcccHHHHHHHHhc----CCCCCc-ccc
Q 028200 155 EEEDVCPTCLEEYDAENPRIITKCE---HHFHLACIFEWMER----SDTCPV-CNQ 202 (212)
Q Consensus 155 ee~~~C~ICle~~~~~~~~~~l~C~---H~FH~~CI~~Wl~~----~~tCPv-Cr~ 202 (212)
++...| ||..... ++-+..=.|. -.||..||. |.. .-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344457 9987543 3311122333 689999985 322 235999 864
No 187
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.06 E-value=40 Score=22.40 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=24.0
Q ss_pred cCCCccccccccccC--CCCeEEcCCCCcccHHHH
Q 028200 155 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACI 187 (212)
Q Consensus 155 ee~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI 187 (212)
..+..|+.|.+.|.. ........|.|..|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 456679999999832 334556778999888873
No 188
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.46 E-value=25 Score=27.26 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=7.4
Q ss_pred CCCCCccccc
Q 028200 194 SDTCPVCNQE 203 (212)
Q Consensus 194 ~~tCPvCr~~ 203 (212)
-..||+|...
T Consensus 171 p~~CP~C~~~ 180 (191)
T 1lko_A 171 PELCPACAHP 180 (191)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCcCC
Confidence 3489999764
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.33 E-value=66 Score=20.24 Aligned_cols=37 Identities=24% Similarity=0.643 Sum_probs=18.5
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|+-|-..+.. . .+.--+..||..| -+|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 346666665543 1 1223456666555 23555555543
No 190
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=71 Score=20.45 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=24.2
Q ss_pred CCCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 156 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 156 e~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
....|+-|-..+. +.. +.--+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQP--LIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCC--CCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceE--EEECcceeCCCC--------CEeCCCCCccC
Confidence 3456888887776 222 233467777766 35777777664
No 191
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.97 E-value=30 Score=22.27 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=20.4
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|..|-+.+..++.+ .--+..||..|. +|-.|++.|.
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCC
Confidence 4577777766444322 224566665552 3566666553
No 192
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.71 E-value=76 Score=19.47 Aligned_cols=36 Identities=22% Similarity=0.562 Sum_probs=19.2
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 204 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l 204 (212)
..|..|-+.+..+ .+.--+..||..| -+|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L 41 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKEC--------FVCTACRKQL 41 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTT--------SBCSSSCCBC
T ss_pred CCCcccCCeeccc---eEEECccccCCCC--------CccCCCCCcC
Confidence 3466666666432 1223456666555 2366666655
No 193
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.71 E-value=31 Score=24.13 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=23.1
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..||+|..+++... ++.+|..|=.. ++...-||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 56999997764322 22223333222 345567999988773
No 194
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.53 E-value=61 Score=19.70 Aligned_cols=39 Identities=13% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
...|+.|-+.+. +. .+.-=+..||..| -+|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 345888887776 22 2334567788766 347778776643
No 195
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.07 E-value=68 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=21.6
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028200 158 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 205 (212)
Q Consensus 158 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~ 205 (212)
..|+.|-+.+..+ .+.-=+..||..| -+|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhh--------CCcccCCCcCC
Confidence 4577777766442 1233466777665 34667766663
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.04 E-value=76 Score=19.91 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=26.9
Q ss_pred CCccccccccccC---CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028200 157 EDVCPTCLEEYDA---ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 206 (212)
Q Consensus 157 ~~~C~ICle~~~~---~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~l~~ 206 (212)
...|+-|-..+.. +... +.-=+..||..| -+|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCcee-EEECcceeCccc--------CEehhcCCCCCC
Confidence 3469999888764 2222 223477888776 458889887753
Done!