BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028201
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/210 (85%), Positives = 197/210 (93%)
Query: 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
MNIF+KKPNP+E LRESKREM ATRG+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKI
Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60
Query: 61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SVA GM+GA+KAMAAM+K M+PAK
Sbjct: 61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120
Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
QAKVMREFQKQSAQMDMTTEMMSD+IDDALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180
Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALR 210
APKGKI K ED SSGIDELEKRLAALR
Sbjct: 181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 185/220 (84%), Gaps = 10/220 (4%)
Query: 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
MNIF KK PK+ALR SKREM ATRG+E+EI +LQ EEK+LVAEIK+TAKTGNE ATKI
Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60
Query: 61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
LARQL+RLRQQI NLQGSRAQIRG+ THTQA++A +S++ GMKGA+KAM AMNKQM P K
Sbjct: 61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120
Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
QAKV+++FQKQSAQ+DMT EMMS+ ID+ LD DEAEEETE+LTNQVLDEIGV VASQLS+
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180
Query: 181 APKGKIASK----------NTEDASSSGIDELEKRLAALR 210
APKG+IA+K +++ SS +DELEKRLA+LR
Sbjct: 181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 121/182 (66%)
Query: 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
M +F K+ PKE LRE++R + + R +++E ALQ +EKK++ +IK+ AK G + KI
Sbjct: 1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60
Query: 61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
+A+ L+R R I + Q++ ++ Q + + ++A MKG +KAM MN+QM +
Sbjct: 61 MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120
Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
K+M EF++QS +MDM EMM+DT+D ++ D EE+++E+ NQVLDEIG+D+ASQL
Sbjct: 121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180
Query: 181 AP 182
AP
Sbjct: 181 AP 182
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 138/210 (65%), Gaps = 3/210 (1%)
Query: 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
++F KK + +RE +E++ R + ++ AL+++EK+L EIK+ AKTGN+ A ++L
Sbjct: 3 SLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVL 61
Query: 62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
A+QL++LR+Q +++ ++T T+ M + +A M +K M A+NK+M+P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
+ M+ FQK++ +M+MT EM++DT+DD D E EEE++++ NQVLDEIG++++ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 182 PKGKIASKNTEDASSSGI--DELEKRLAAL 209
P +T A S GI +E+E++L AL
Sbjct: 182 PSAAKGLPSTSAAKSKGISDEEIERQLKAL 211
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 11/220 (5%)
Query: 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
+IF K+ P E LRE+KR + + R +E+E LQ +EKKL+ EIK+TAK G GA K++
Sbjct: 4 SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63
Query: 62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
A+ LIR R QI ++Q++G++ Q + + ++ MKG +KAM MN+QM
Sbjct: 64 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 123
Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
K+M+EF++Q+ +M+M +E+M D IDDAL+ DE EEETE+L +QVLDEIG+D+ +L A
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183
Query: 182 PKGKI---ASKN-------TEDASSSGID-ELEKRLAALR 210
P G + A+KN T S GID +L+ RL LR
Sbjct: 184 PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 138/210 (65%), Gaps = 3/210 (1%)
Query: 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
++F KK + +RE +E++ R + ++ AL+++EK+L EIK+ AK GN+ A ++L
Sbjct: 3 SLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVL 61
Query: 62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
A+QL++LR+Q +++ ++T T+ M + +A M +K M A+NK+M+P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
+ M+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 182 PKGKIASKNTEDASSSGI--DELEKRLAAL 209
P +T + SSGI +E+E++L AL
Sbjct: 182 PSAAKGLPSTSASKSSGISDEEIERQLKAL 211
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 137/206 (66%), Gaps = 2/206 (0%)
Query: 6 KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
KK + ++E RE++ R + ++ AL+++E++L EIK+ AKTGN+ A K+LA+QL
Sbjct: 6 KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQL 65
Query: 66 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
++LR+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K + M
Sbjct: 66 VQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125
Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGK 185
+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ AP
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185
Query: 186 --IASKNTEDASSSGIDELEKRLAAL 209
+ S +T AS+ +E+E++L AL
Sbjct: 186 RGLPSASTSKASTISDEEIERQLKAL 211
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Query: 6 KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
KK + ++E RE++ R + ++ AL+++EK+L EIK+ AK GN+ A K+LA+QL
Sbjct: 6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQL 65
Query: 66 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
+ LR+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K + M
Sbjct: 66 VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125
Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG- 184
+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ AP
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185
Query: 185 -KIASKNTEDASSSGIDELEKRLAAL 209
+ S +T A+ S +E+E++L AL
Sbjct: 186 RSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Query: 6 KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
KK + ++E RE++ R + ++ AL+++EK+L EIK+ AK GN+ A K+LA+QL
Sbjct: 6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQL 65
Query: 66 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
+ LR+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K + M
Sbjct: 66 VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125
Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG- 184
+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ AP
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185
Query: 185 -KIASKNTEDASSSGIDELEKRLAAL 209
+ S +T A+ S +E+E++L AL
Sbjct: 186 RSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 137/211 (64%), Gaps = 2/211 (0%)
Query: 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
M KK + ++E +E++ R + ++ AL+++EK+L EIK+ AKTGN A K+
Sbjct: 1 MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKV 60
Query: 61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
LA+QL+++R+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K
Sbjct: 61 LAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKK 120
Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
+ ++ FQK++A+MDMT EMM+DT+D+ ++ EEE++++ NQVLDEIG++++ +++
Sbjct: 121 TMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAH 180
Query: 181 APKGKIASKNTEDASSSGI--DELEKRLAAL 209
AP + + A + GI +++E++L AL
Sbjct: 181 APSAARKTPSAATAKADGISDEDIERQLKAL 211
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 137/210 (65%), Gaps = 3/210 (1%)
Query: 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
++F KK + +++ +E++ R + ++ AL+++EK+L EIK+ AK GN+ A K+L
Sbjct: 3 SLF-KKKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVL 61
Query: 62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
A+QL++LR+Q +++ ++T T+ M + +A M +K M A+NK+M+P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
+ M+ FQK++ +M+MT EM++DT+DD D E EEE++++ NQVLDEIG++++ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 182 PKGKIASKNTEDASSSGI--DELEKRLAAL 209
P + + S+GI +E+E++L AL
Sbjct: 182 PSAAKGLPSASASKSTGISDEEIERQLKAL 211
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Query: 6 KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
KK + ++E RE++ R + ++ AL+++EK+L EIK+ AK GN+ A ++LA+QL
Sbjct: 6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQL 65
Query: 66 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
+ LR+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K + M
Sbjct: 66 VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125
Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG- 184
+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ AP
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185
Query: 185 -KIASKNTEDASSSGIDELEKRLAAL 209
+ S +T A+ S +E+E++L AL
Sbjct: 186 RSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 136/208 (65%), Gaps = 7/208 (3%)
Query: 6 KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
KK + ++E RE++ R + ++ AL+++EK+L EIK+ AK GN+ A ++LA+QL
Sbjct: 6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQL 65
Query: 66 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
+ LR+Q +++ ++T T+ M++ +A M +K M A+NK+M+P K + M
Sbjct: 66 VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125
Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGK 185
+ FQK++ +M+MT EM++DT+DD D + EEE++++ NQVLDEIG++++ +++ AP
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPS-- 183
Query: 186 IASKNTEDASSS----GIDELEKRLAAL 209
A+++ AS+S +E+E++L AL
Sbjct: 184 -AARSLPSASTSKSTISDEEIERQLKAL 210
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 123/180 (68%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F ++ P+E LR+++R + A R M++E L+Q+EKK++A+IK+ AK G A KI+A
Sbjct: 4 LFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMA 63
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R+ + RA I+ ++ Q + +++S+A MKG +KAMA MN+Q++ +
Sbjct: 64 KDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 182
K+M EF+KQS MDM EMM+D IDDA+ +++ EEE++ + +QVLDE+G+ + +LS P
Sbjct: 124 KIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 123/180 (68%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F ++ P+E LR+++R + A R +++E L+Q+EKK++A+IK+ AK G A KI+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMA 63
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R+ + RA I+ ++ Q + +++S+A MKG +KAMA MN+Q++ +
Sbjct: 64 KDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 182
K+M EF+KQS MDM EMM+D IDDA+ +++ EEE++ + +QVLDE+G+ + +LS P
Sbjct: 124 KIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 125/181 (69%)
Query: 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
++F ++ P+E LR+++R + A R +++E L+Q+EKK++A+IK+ AK G A KI+
Sbjct: 3 SLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIM 62
Query: 62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
A+ L+R R+ + RA I+ ++ Q + +++S+A MKG +KAMA MN+Q++ +
Sbjct: 63 AKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQI 122
Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
K+M EF++QS MDM EMM+D IDDA+ +++ EEE++ + +QVLDE+G+ ++ +LS
Sbjct: 123 QKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNL 182
Query: 182 P 182
P
Sbjct: 183 P 183
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 121/180 (67%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F ++ P+E LR+++R + A R +++E L+ +EKK++A+IK+ AK G A +I+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R+ + RA I+ ++ Q + +++S+A MKG +KAM MN+Q++ +
Sbjct: 64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 182
K+M EF++Q+ MDM EMM+D IDDA+ ++E EEE++ + +QVLDE+G+ + +LS P
Sbjct: 124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 121/180 (67%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F ++ P+E LR+++R + A R +++E L+ +EKK++A+IK+ AK G A +I+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R+ + RA I+ ++ Q + +++S+A MKG +KAM MN+Q++ +
Sbjct: 64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 182
K+M EF++Q+ MDM EMM+D IDDA+ ++E EEE++ + +QVLDE+G+ + +LS P
Sbjct: 124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 123/180 (68%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F ++ P+E LR+++R + A R +++E L+ +EKK++ +IK+ AK G A KI+A
Sbjct: 4 LFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMA 63
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R+ + RA ++ ++ Q + +++S+A+ MKG +KAMA MN+Q++ +
Sbjct: 64 KDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQ 123
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 182
K+M EF+KQ+ MDM E+M+D IDDA+ +++ EEE++ + +QVLDE+G+++ +L+ P
Sbjct: 124 KIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLP 183
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 112/187 (59%), Gaps = 1/187 (0%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F K P+E L++++R ++ R +E+E L+ ++KKLV+EIK++AK G A K+ A
Sbjct: 7 VFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQA 66
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
+ L+R R I +AQ++ I+ QA+ + + M A+ +A MN+ M +
Sbjct: 67 KDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQ 126
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDAL-DNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
++ EF+KQS M E M + ID+ + D + +EE +E+ N+VLDEIGVD+ SQL +
Sbjct: 127 RISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQST 186
Query: 182 PKGKIAS 188
P+ +++
Sbjct: 187 PQNLVSN 193
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 3/205 (1%)
Query: 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILA 62
+F +P+E LR +R + A R +++E L Q E+ L+ EIK +AK GN GA +I A
Sbjct: 7 LFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQA 66
Query: 63 RQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA 122
R L+RLR + ++ Q++ I+ Q M + M+GA++ + MNK M A
Sbjct: 67 RDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMA 126
Query: 123 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQL--SA 180
++ ++F++++ M+ EM+ + +DDAL+ D+ EE E + N+VLDEIGVD++ L +A
Sbjct: 127 RITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADELV-NKVLDEIGVDLSQGLPDAA 185
Query: 181 APKGKIASKNTEDASSSGIDELEKR 205
G + TED + +DEL KR
Sbjct: 186 TQIGTVPELKTEDNLQARLDELAKR 210
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 121/210 (57%), Gaps = 5/210 (2%)
Query: 1 MNIFS-KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATK 59
M+ F K P++ L++SKRE+ R M++E+ L+ E++ + +IK+ AK G K
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 60 ILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPA 119
+A L++LR Q+ ++ ++ + ++T T + A+ ++A M A+KAM+ MNKQ +
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLV 120
Query: 120 KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLS 179
+ K M E++KQ+ +++MT EMM D +D E +EE +++ ++V+DE+ +D ++
Sbjct: 121 QLQKTMMEYEKQTQRVEMTEEMMQDMFEDD----EVDEEADDILSKVVDEVCLDNYQKMP 176
Query: 180 AAPKGKIASKNTEDASSSGIDELEKRLAAL 209
+ + + + + +EL K L +L
Sbjct: 177 SVAQKDLPYSSKTSTFKTEDEELNKLLQSL 206
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 127/230 (55%), Gaps = 24/230 (10%)
Query: 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
MNI KP+PK+ LR+ +R+++ R +E++I +Q+EE+ + IK AK + + K
Sbjct: 5 MNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKA 64
Query: 61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVG-----MKGASKAMAAMNKQ 115
LA++++ R+ + L ++AQ+ I +MH SVA+ + +++ M +N
Sbjct: 65 LAKEIVSSRRTVNRLYENKAQMNSI-----SMHLGESVAIARTVGHLSKSAEVMKLVNNL 119
Query: 116 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVA 175
M+ + A M+EF K+ + + E +++ ID+ALD+++ EEE +E ++VL I + A
Sbjct: 120 MKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETA 179
Query: 176 SQLSAA--------PKGKIASKNTEDASSSGID------ELEKRLAALRN 211
++L A P K ++ E+A + G+D E+ RLA +R+
Sbjct: 180 AELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 115/213 (53%), Gaps = 14/213 (6%)
Query: 4 FSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR 63
F KKP P+E +++ KRE++ RG++ ++ A+ +EKK V IK K G++ + K LA+
Sbjct: 4 FLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAK 63
Query: 64 QLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAK 123
+++ R+ + ++AQ+ ++ Q+ A + V + +++ M MN ++ + K
Sbjct: 64 EIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNK 123
Query: 124 VMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP- 182
VM + + + EM+SD D + ++ EEE E N+++DEI V Q+S+AP
Sbjct: 124 VMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEILVS-GPQVSSAPL 180
Query: 183 ----KGKIASKNTEDASSSGIDELEKRLAALRN 211
+ ++ + ED+ EL RL AL++
Sbjct: 181 ETHQQEEVVQEKQEDS------ELLDRLKALKS 207
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 103
A++K+ + N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 104 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 156
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQ 143
Query: 157 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIVQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 98/185 (52%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K +P PK+ + E +++ R ++++I +Q+E++K+ IK +AK GN A
Sbjct: 1 MGLFGKTQERP-PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREA 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
ILA+++++ ++ + L S+A + + + A V+ ++ +++ M AM ++
Sbjct: 60 CVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D DE EE+ E +++L E+ A
Sbjct: 120 LPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEV---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 103
A++K+ N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 104 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 156
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQ 143
Query: 157 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIMQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 103
A++K+ N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 104 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 156
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQ 143
Query: 157 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIMQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K +P PK+ + E +++ R ++++I +Q+E++K+ IK +AK GN A
Sbjct: 1 MGLFGKTQERP-PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREA 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
ILA++++ ++ + L S+A + + + A V+ ++ +++ M AM ++
Sbjct: 60 CVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MR+ K+ + + EM+ DT + D DE EE+ E +++L EI A
Sbjct: 120 IPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 103
A++K+ + N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 104 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 156
G +K MA + K ++ A K + VM +F +Q +D+ T +M D++ A+ +
Sbjct: 84 GVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQ 143
Query: 157 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
E+ + L Q+ +E G++V QL+ P+G AS E ++ + D+L +RLA+LRN
Sbjct: 144 EQVDNLIVQIAEENGLEVMDQLNQLPQG--ASSVGESSTRTQEDQLSRRLASLRN 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F+ Q +D+ T+ M DT+ + + + + L +++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D++ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLSMEL---PQGQTGSVGTSVASTEQ-DELSQRLARLRD 197
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EE E +++L EI A
Sbjct: 120 IPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EEE E +++L EI A
Sbjct: 120 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EE E +++L EI A
Sbjct: 120 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EEE E +++L EI A
Sbjct: 120 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%)
Query: 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 103
A++K+ + N ++ A IR + + N +++ +A+ Q VA M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMT 90
Query: 104 GASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELT 163
+KA+ M+ K + VM +F+ Q +D+ T +M D++ A +++ ++L
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLI 150
Query: 164 NQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
Q+ +E G++V QLS P G A T + D+L +RLAALRN
Sbjct: 151 LQIAEESGLEVEDQLSQLPAGASALGETSARAQEKEDQLSRRLAALRN 198
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EE E +++L EI A
Sbjct: 120 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PKE + E +++ R ++++I +Q+EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
+LA+++IR R+ ++ L S+A + + + A VA ++ +++ M AM ++
Sbjct: 60 CVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MRE K+ + + EM+ DT + D +E EE E +++L EI A
Sbjct: 120 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 178 LSAAP 182
L AP
Sbjct: 177 LGKAP 181
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F+ Q +D+ T+ M DT+ + + + + L +++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASTEQ-DELSQRLARLRD 197
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 35 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA 94
+++EE+ + IK + K + K LAR+++ R+ + L ++AQ+ I+ H A
Sbjct: 10 IEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIA 69
Query: 95 HSSVAVG-MKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 153
++V VG + + + M +N M+ + A M+ F K+ + + E +SD +D+ALD++
Sbjct: 70 -TAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSE 128
Query: 154 EAEEETEELTNQVLDEIGVDVASQLSAA--------PKGKIASKNTEDASSSGID---EL 202
+ EEE EE ++VL I + A++L A P K + + EDA G+D EL
Sbjct: 129 DIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEEL 188
Query: 203 E---KRLAALRN 211
E RLA +R+
Sbjct: 189 EAIRYRLANVRS 200
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 1 MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
M +F K KP PK+ + E +++ R ++++I +Q+EE+K+ IK AK G +
Sbjct: 1 MGLFGKTQEKP-PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDV 59
Query: 58 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQME 117
ILA+++I+ ++ I L S+AQ+ + + + VA ++ +++ M AM ++
Sbjct: 60 CIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVK 119
Query: 118 PAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQ 177
+ MR+ K+ + + EM+ DT++ D +E EE E +++L EI A
Sbjct: 120 IPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEI---TAGA 176
Query: 178 LSAAPK-----------GKIASKNTEDASSSGIDELEKRLAALRN 211
L AP G A+ E I+E++ RLAALR+
Sbjct: 177 LGKAPSKVTDLPDPVAIGATAAPEEESEEEEEIEEMQSRLAALRS 221
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 50 AKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAM 109
+ GN +I A IR + Q N A++ +A Q V M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 110 AAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 169
A K M K + +M +F+ Q +D+ T+ M +T+ + + + + L ++ DE
Sbjct: 100 DATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADE 159
Query: 170 IGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
G+D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 160 AGLDLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q + V M G K M A
Sbjct: 43 GNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F++Q +D+ T M D++ + + + L ++ DE G+
Sbjct: 103 LKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLAKLRD 197
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 20 EMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSR 79
+++ ++ +EK+ +Q EK ++K+ + GN +I A+ IR + Q N
Sbjct: 7 QLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLA 66
Query: 80 AQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTT 139
++I +A+ + SV M K+M + M+ K +VM +F++Q +D+ +
Sbjct: 67 SRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQS 126
Query: 140 EMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI 199
+ + ++ ++ + L +QV DE G++V Q+ +AP K+ T
Sbjct: 127 VYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGET-------- 178
Query: 200 DELEKRLAALR 210
DEL +RL L+
Sbjct: 179 DELTERLNRLK 189
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 53 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 113 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172
+ M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 173 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211
D+ +L P+G+ S AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGASVASTEQ-DELSQRLARLRD 197
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 8 PNPKEALRESKREMQHATRGMEK---EIGALQQEEKKLVAEIKRTAKTGNEGATKILARQ 64
P+PKE R + ++ R +EK E+ LQ + ++L IK++AK + ++ A++
Sbjct: 11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQL---IKKSAKKNDVRTVRLYAKE 67
Query: 65 LIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKV 124
L ++ +Q + SRAQ+ + ++++ M ++ M +N + +
Sbjct: 68 LYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNT 127
Query: 125 MREFQKQSAQMDMTTEMMSDTIDDALD-NDEAEEETEELTNQVLDEIGVDVASQLSAAPK 183
M E +K+ + + +EM+ DT++ D +E +E +E N+++++ + + P
Sbjct: 128 MIELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPT 187
Query: 184 GKIASKNTE---------DASSSGIDELEKRLAALRN 211
++A+ E + + ++E+ +RL AL+N
Sbjct: 188 VELAANEEEQEIPDEKVDEEADRMVNEMRERLRALQN 224
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%)
Query: 14 LRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 73
L S +++ A + + K+ +EE+ ++K+ GN +I A IR +Q+
Sbjct: 4 LEASLFQLKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIRKQQESL 63
Query: 74 NLQGSRAQIRGIATHTQA---MHAHSSVAVGM-KGASKAMAAMNKQMEPAKQAKVMREFQ 129
NL ++I +++ Q M A S G+ +G +AM MN +M ++VM +F+
Sbjct: 64 NLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEM----ISQVMDKFE 119
Query: 130 KQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASK 189
Q +++ T M+ + D +E+ + L V DE G++ ++ AS
Sbjct: 120 AQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAASV 179
Query: 190 NTEDASSSGIDELEKRLAALR 210
T A D L++RL ALR
Sbjct: 180 PTPAAPVED-DNLQERLRALR 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.120 0.306
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,594,627
Number of Sequences: 539616
Number of extensions: 2324918
Number of successful extensions: 14709
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 14275
Number of HSP's gapped (non-prelim): 739
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)