Query 028201
Match_columns 212
No_of_seqs 123 out of 728
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 2.9E-51 6.4E-56 324.1 26.9 211 1-211 1-223 (224)
2 KOG3229 Vacuolar sorting prote 100.0 1.4E-46 3.1E-51 299.8 24.1 211 1-211 1-227 (227)
3 KOG3231 Predicted assembly/vac 100.0 1.7E-42 3.7E-47 268.0 23.7 208 1-211 1-208 (208)
4 KOG3232 Vacuolar assembly/sort 100.0 5.7E-37 1.2E-41 238.7 24.4 196 12-211 5-202 (203)
5 PF03357 Snf7: Snf7; InterPro 99.9 1.3E-26 2.8E-31 184.7 10.4 168 16-185 1-170 (171)
6 PTZ00464 SNF-7-like protein; P 99.9 9.4E-24 2E-28 173.8 22.7 188 1-191 1-198 (211)
7 KOG1656 Protein involved in gl 99.9 2.9E-20 6.3E-25 148.8 20.2 179 3-189 7-199 (221)
8 PTZ00446 vacuolar sorting prot 99.9 6E-20 1.3E-24 148.5 21.9 161 1-165 1-176 (191)
9 KOG2910 Uncharacterized conser 99.8 2.9E-17 6.3E-22 130.4 23.5 175 1-187 1-180 (209)
10 KOG1655 Protein involved in va 99.8 3.7E-17 8E-22 130.3 20.0 169 1-172 1-176 (218)
11 COG5491 VPS24 Conserved protei 99.4 2.5E-11 5.5E-16 99.0 17.8 177 28-211 5-201 (204)
12 KOG2911 Uncharacterized conser 99.3 1.9E-10 4E-15 102.1 20.0 171 12-184 229-400 (439)
13 PRK10698 phage shock protein P 98.4 7.1E-05 1.5E-09 62.5 18.8 126 8-133 23-173 (222)
14 COG5491 VPS24 Conserved protei 98.3 9.5E-05 2.1E-09 60.7 16.0 136 35-179 5-153 (204)
15 PTZ00464 SNF-7-like protein; P 98.1 0.0017 3.8E-08 53.8 21.1 148 6-166 12-173 (211)
16 TIGR02977 phageshock_pspA phag 98.0 0.0021 4.6E-08 53.5 20.0 127 8-134 23-174 (219)
17 PTZ00446 vacuolar sorting prot 97.8 0.006 1.3E-07 49.8 18.6 142 21-169 25-176 (191)
18 KOG3230 Vacuolar assembly/sort 97.6 0.006 1.3E-07 49.4 15.4 154 11-171 18-175 (224)
19 PF04012 PspA_IM30: PspA/IM30 97.5 0.047 1E-06 45.2 19.4 137 8-144 22-186 (221)
20 PF03357 Snf7: Snf7; InterPro 97.4 0.0015 3.3E-08 51.5 9.2 147 24-177 2-156 (171)
21 KOG1656 Protein involved in gl 97.1 0.098 2.1E-06 42.8 16.7 152 22-180 20-180 (221)
22 KOG3229 Vacuolar sorting prote 97.1 0.13 2.8E-06 42.2 17.9 166 10-184 8-183 (227)
23 KOG3231 Predicted assembly/vac 96.6 0.24 5.3E-06 39.3 16.8 158 11-181 17-183 (208)
24 KOG2910 Uncharacterized conser 96.4 0.42 9E-06 38.8 17.8 93 22-125 15-116 (209)
25 COG1842 PspA Phage shock prote 95.9 0.83 1.8E-05 38.3 20.5 126 8-136 23-176 (225)
26 PF03398 Ist1: Regulator of Vp 95.8 0.21 4.6E-06 39.8 11.2 152 19-173 2-164 (165)
27 KOG3232 Vacuolar assembly/sort 94.7 1.8 3.9E-05 34.7 15.7 34 71-104 71-104 (203)
28 KOG1655 Protein involved in va 86.4 17 0.00037 29.8 15.5 92 24-115 20-115 (218)
29 COG1937 Uncharacterized protei 86.1 9.9 0.00022 27.2 8.4 47 68-114 8-54 (89)
30 PRK15039 transcriptional repre 81.4 17 0.00037 26.0 8.2 48 68-115 8-55 (90)
31 KOG2911 Uncharacterized conser 80.7 46 0.001 30.5 13.8 147 19-173 229-385 (439)
32 PF02583 Trns_repr_metal: Meta 76.1 24 0.00052 24.7 8.7 47 69-115 5-51 (85)
33 PRK11352 regulator protein Frm 68.9 40 0.00086 24.1 8.5 47 68-114 8-54 (91)
34 PF08569 Mo25: Mo25-like; Int 65.3 50 0.0011 29.3 8.7 68 1-68 1-75 (335)
35 COG1842 PspA Phage shock prote 59.7 1E+02 0.0022 25.7 17.3 38 10-47 18-55 (225)
36 PRK13455 F0F1 ATP synthase sub 52.7 1.2E+02 0.0025 24.2 15.9 46 4-49 46-91 (184)
37 PF08946 Osmo_CC: Osmosensory 52.2 35 0.00076 21.2 3.8 36 9-44 5-40 (46)
38 PF07361 Cytochrom_B562: Cytoc 50.7 45 0.00098 24.2 5.0 33 44-76 70-102 (103)
39 PF11068 YlqD: YlqD protein; 49.8 1.1E+02 0.0023 23.5 7.1 31 17-47 21-51 (131)
40 PRK05431 seryl-tRNA synthetase 48.2 2.2E+02 0.0048 26.1 11.4 69 17-91 29-98 (425)
41 PRK09720 cybC cytochrome b562; 48.2 47 0.001 24.3 4.6 31 46-76 69-99 (100)
42 PF10458 Val_tRNA-synt_C: Valy 44.9 89 0.0019 20.6 7.3 61 28-90 2-63 (66)
43 PF01601 Corona_S2: Coronaviru 44.3 1.3E+02 0.0029 28.9 8.2 47 125-172 289-336 (610)
44 PRK09343 prefoldin subunit bet 41.8 88 0.0019 23.3 5.6 45 12-56 74-118 (121)
45 COG1382 GimC Prefoldin, chaper 38.1 1.1E+02 0.0024 23.1 5.4 43 10-52 71-113 (119)
46 PF06305 DUF1049: Protein of u 38.0 44 0.00096 21.8 3.1 23 19-41 44-66 (68)
47 COG3783 CybC Soluble cytochrom 36.8 75 0.0016 23.1 4.2 30 45-74 68-97 (100)
48 PF12958 DUF3847: Protein of u 34.9 1.6E+02 0.0036 20.8 6.8 54 20-87 5-58 (86)
49 KOG2027 Spindle pole body prot 34.0 3.7E+02 0.0079 24.5 13.8 138 33-174 11-161 (388)
50 PF02403 Seryl_tRNA_N: Seryl-t 33.9 1.8E+02 0.0038 20.8 10.6 66 19-90 32-98 (108)
51 PF08653 DASH_Dam1: DASH compl 33.1 79 0.0017 20.7 3.5 31 119-150 8-38 (58)
52 PLN03086 PRLI-interacting fact 31.5 4.8E+02 0.01 25.1 9.9 63 28-96 5-67 (567)
53 smart00685 DM14 Repeats in fly 31.3 1.5E+02 0.0034 19.4 6.3 39 34-76 3-41 (59)
54 TIGR00414 serS seryl-tRNA synt 31.1 4.1E+02 0.0089 24.2 11.2 72 16-91 30-101 (418)
55 PF04065 Not3: Not1 N-terminal 31.0 3.2E+02 0.007 23.0 8.8 40 26-73 45-84 (233)
56 PRK15058 cytochrome b562; Prov 30.9 1.2E+02 0.0026 23.2 4.7 31 46-76 97-127 (128)
57 PF04508 Pox_A_type_inc: Viral 29.4 72 0.0016 16.9 2.3 18 19-36 4-21 (23)
58 PF12205 GIT1_C: G protein-cou 27.9 2.7E+02 0.0058 21.1 6.5 34 2-36 56-89 (123)
59 PF04799 Fzo_mitofusin: fzo-li 27.3 2.8E+02 0.006 22.3 6.4 29 12-40 116-144 (171)
60 PF07743 HSCB_C: HSCB C-termin 26.7 2E+02 0.0044 19.2 8.2 48 26-77 27-74 (78)
61 COG1382 GimC Prefoldin, chaper 26.5 2.3E+02 0.005 21.3 5.5 36 14-49 68-103 (119)
62 KOG2150 CCR4-NOT transcription 26.5 1.6E+02 0.0035 28.1 5.6 41 25-73 44-84 (575)
63 PF04012 PspA_IM30: PspA/IM30 26.2 3.5E+02 0.0077 21.9 18.1 34 10-43 17-50 (221)
64 PF01452 Rota_NSP4: Rotavirus 26.2 1.8E+02 0.004 23.0 5.0 42 1-45 80-123 (173)
65 PF09424 YqeY: Yqey-like prote 26.0 3.1E+02 0.0067 21.1 12.3 19 155-173 92-110 (143)
66 PF04977 DivIC: Septum formati 26.0 2E+02 0.0043 18.9 6.5 43 19-63 20-62 (80)
67 PF04521 Viral_P18: ssRNA posi 25.8 2.1E+02 0.0046 21.6 5.1 38 24-61 73-110 (120)
68 PF14842 FliG_N: FliG N-termin 25.0 1.9E+02 0.0041 20.9 4.8 62 102-168 35-100 (108)
69 PF03961 DUF342: Protein of un 24.7 5.4E+02 0.012 23.5 9.5 31 21-51 332-362 (451)
70 PRK06798 fliD flagellar cappin 24.5 4.3E+02 0.0094 24.3 8.1 21 23-43 379-399 (440)
71 COG4911 Uncharacterized conser 23.9 1.9E+02 0.0042 21.4 4.5 38 1-39 1-41 (123)
72 PRK07737 fliD flagellar cappin 23.8 4.6E+02 0.01 24.6 8.2 21 27-47 445-465 (501)
73 PF04065 Not3: Not1 N-terminal 23.4 4.5E+02 0.0098 22.1 9.0 42 8-49 113-155 (233)
74 PF11500 Cut12: Spindle pole b 22.7 3.8E+02 0.0083 21.0 9.7 69 15-91 69-137 (152)
75 PRK07857 hypothetical protein; 22.2 2.9E+02 0.0063 20.3 5.2 37 18-54 30-66 (106)
76 PRK13694 hypothetical protein; 22.1 2.9E+02 0.0063 19.4 5.6 42 30-72 19-62 (83)
77 PF13655 RVT_N: N-terminal dom 21.9 2.9E+02 0.0063 19.3 5.3 35 34-68 8-42 (84)
78 PRK00191 tatA twin arginine tr 21.9 43 0.00094 23.7 0.8 31 3-33 18-50 (84)
79 TIGR01837 PHA_granule_1 poly(h 21.9 3.4E+02 0.0073 20.1 6.3 18 155-172 75-92 (118)
80 TIGR02338 gimC_beta prefoldin, 21.9 3.2E+02 0.0069 19.8 8.7 76 69-144 13-88 (110)
81 PF06502 Equine_IAV_S2: Equine 21.7 40 0.00087 22.4 0.6 6 1-6 1-6 (67)
82 COG0172 SerS Seryl-tRNA synthe 21.3 6.6E+02 0.014 23.2 10.4 69 17-90 30-99 (429)
83 cd04776 HTH_GnyR Helix-Turn-He 21.3 3.4E+02 0.0074 19.9 5.9 39 11-49 75-113 (118)
84 TIGR03752 conj_TIGR03752 integ 20.9 7E+02 0.015 23.4 10.1 37 9-49 56-92 (472)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-51 Score=324.09 Aligned_cols=211 Identities=50% Similarity=0.720 Sum_probs=197.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRA 80 (212)
Q Consensus 1 m~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a 80 (212)
|++||++++|.|.+|+++|.|.+..|+|+|++.+|+.+++|+...||+.+|.|+.+++||+|++|||.|+++.+|+.+++
T Consensus 1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka 80 (224)
T KOG3230|consen 1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA 80 (224)
T ss_pred CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201 81 QIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETE 160 (212)
Q Consensus 81 ql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d 160 (212)
||.+|+.++++.+++..++.+|++++++|..||+.||+|+++++|.+|++|++.|++.+|||+|++|++++++++|+|.|
T Consensus 81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd 160 (224)
T KOG3230|consen 81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD 160 (224)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhcccCCCCCC--------CCCCc----cCCCCccHHHHHHHHHhhcC
Q 028201 161 ELTNQVLDEIGVDVASQLSAAPKGKI--------ASKNT----EDASSSGIDELEKRLAALRN 211 (212)
Q Consensus 161 ~~~~~v~~E~~~~~~~~l~~ap~~~~--------~~~~~----~~~~~~~~~~l~~RL~aLr~ 211 (212)
+++++||||+|++++.+|.++|++.. ..+++ .+.....+|+|++||++||.
T Consensus 161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK 223 (224)
T ss_pred HHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence 99999999999999999999998221 11111 11223568999999999986
No 2
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-46 Score=299.78 Aligned_cols=211 Identities=29% Similarity=0.482 Sum_probs=191.7
Q ss_pred CCCCCC--CCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 1 MNIFSK--KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGS 78 (212)
Q Consensus 1 m~~fg~--~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~ 78 (212)
|++||+ +|||||++|+|++.||++.|.|||+++.+++++++.+..||+++|+||..+|++|||++++.||++.+||..
T Consensus 1 ~~l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~s 80 (227)
T KOG3229|consen 1 MGLFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYES 80 (227)
T ss_pred CCccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678987 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHH
Q 028201 79 RAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEE 158 (212)
Q Consensus 79 ~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee 158 (212)
+|||+||.++|..+.++..+.++|++++.+|+.+|+++.+|++..||.+|+++|++.|+|+||++++|+++.|+++.+++
T Consensus 81 KAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe 160 (227)
T KOG3229|consen 81 KAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEE 160 (227)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHhcchhhhhcccCCCCC----CCCC--Cc-------cC-CCCccHHHHHHHHHhhcC
Q 028201 159 TEELTNQVLDEIGVDVASQLSAAPKGK----IASK--NT-------ED-ASSSGIDELEKRLAALRN 211 (212)
Q Consensus 159 ~d~~~~~v~~E~~~~~~~~l~~ap~~~----~~~~--~~-------~~-~~~~~~~~l~~RL~aLr~ 211 (212)
+|++|++|+.+|..+-.+.+|.+|... ++.. +. +. +.+++..+|+.||++||+
T Consensus 161 ~deEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 161 ADEEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred HHHHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 999999999999988777777776543 1111 10 00 011246799999999996
No 3
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=268.02 Aligned_cols=208 Identities=39% Similarity=0.644 Sum_probs=194.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRA 80 (212)
Q Consensus 1 m~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a 80 (212)
+++|++ |||+|..|++.|.||++.|.|+|+++++++++++|+.+||+.++.||.++||++|++||..|+|..+-+...+
T Consensus 1 ~niF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ 79 (208)
T KOG3231|consen 1 ANIFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS 79 (208)
T ss_pred CCcccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 579996 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201 81 QIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETE 160 (212)
Q Consensus 81 ql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d 160 (212)
++.+++.|-..+.++..++++|.+.++.|+.+|+.|+|+++..+|.+|....++|++.+|||+|++|+.++.+++++|.+
T Consensus 80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~ 159 (208)
T KOG3231|consen 80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ 159 (208)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhcccCCCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201 161 ELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211 (212)
Q Consensus 161 ~~~~~v~~E~~~~~~~~l~~ap~~~~~~~~~~~~~~~~~~~l~~RL~aLr~ 211 (212)
++|++||||||+++++++..+|+.......++ ...+++|+++.|++||+
T Consensus 160 aiVNqVLDEIGIEisgKma~~P~a~s~~~~st--~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 160 AIVNQVLDEIGIEISGKMAKAPSARSLPSAST--SKATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHHHhhhhhcchhccCCccCCCCcccc--CCCcHHHHHHHHHHhcC
Confidence 99999999999999999999996433211111 23578899999999985
No 4
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-37 Score=238.70 Aligned_cols=196 Identities=24% Similarity=0.393 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 91 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~ 91 (212)
..+....+.|++..++|.|+..+|+++|+..+.++|+|+++||.+.|||||.++||+|++.-+|+++.+++++|.+++++
T Consensus 5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT 84 (203)
T KOG3232|consen 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT 84 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhc
Q 028201 92 MHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIG 171 (212)
Q Consensus 92 a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~ 171 (212)
+..+..++.+|.++.+.|....+.||+++|..+|+.|+.+|+.+++..+.|.++|++.+.-+.|.+++|.|+++|+||+|
T Consensus 85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG 164 (203)
T KOG3232|consen 85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG 164 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred chhhhhcccC--CCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201 172 VDVASQLSAA--PKGKIASKNTEDASSSGIDELEKRLAALRN 211 (212)
Q Consensus 172 ~~~~~~l~~a--p~~~~~~~~~~~~~~~~~~~l~~RL~aLr~ 211 (212)
++++..||.- |...+++ ... ..++|+|.+||++||+
T Consensus 165 lElnq~lp~~~~~a~~~~t---~~~-~~e~d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 165 LELNQELPQNVVPAISVKT---SAV-VDEEDDLTQRLAALRA 202 (203)
T ss_pred hhhhhcCCCCCCCCcCCCC---ccc-cchhhHHHHHHHHHhc
Confidence 9999888763 3332221 112 2334999999999996
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.94 E-value=1.3e-26 Score=184.73 Aligned_cols=168 Identities=29% Similarity=0.439 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 16 ESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAH 95 (212)
Q Consensus 16 ~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~ 95 (212)
++++.|+.+.+.|++++.+|+.+.+++..++++++++|+...|++|++...+.+++..+++....+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcchh-
Q 028201 96 SSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV- 174 (212)
Q Consensus 96 ~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~~~- 174 (212)
..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++.. +++++++++++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988754 34567899999999999999987
Q ss_pred -hhhcccCCCCC
Q 028201 175 -ASQLSAAPKGK 185 (212)
Q Consensus 175 -~~~l~~ap~~~ 185 (212)
...||++|++.
T Consensus 159 ~~~~lp~~P~~~ 170 (171)
T PF03357_consen 159 EKQQLPSVPSTE 170 (171)
T ss_dssp -SS-SS---HH-
T ss_pred ccccCCcCCCCC
Confidence 78888888764
No 6
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.93 E-value=9.4e-24 Score=173.77 Aligned_cols=188 Identities=20% Similarity=0.249 Sum_probs=151.5
Q ss_pred CC-CCCCCC-ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----H
Q 028201 1 MN-IFSKKP-NPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA----N 74 (212)
Q Consensus 1 m~-~fg~~~-~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~----~ 74 (212)
|+ |||+++ .|+..+++++..+|.....|++.+.+|+.+..+.+..+++....+ ..+.|..|..++|.||.++ +
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~-~~~~K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMT-QSRHKQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 999864 688899999999999999999999999999888888877654422 2346889999999999776 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchh
Q 028201 75 LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDE 154 (212)
Q Consensus 75 l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~ 154 (212)
+.....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++.++++..+.|+++++.+++.. ++.
T Consensus 80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~ 157 (211)
T PTZ00464 80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDI 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCC
Confidence 667888888888999999999999999999999999999999999999999999999999999999999876421 122
Q ss_pred hHHHHHHHHHHHHHHh----cchhhhhcccCCCCCCCCCCc
Q 028201 155 AEEETEELTNQVLDEI----GVDVASQLSAAPKGKIASKNT 191 (212)
Q Consensus 155 ~eee~d~~~~~v~~E~----~~~~~~~l~~ap~~~~~~~~~ 191 (212)
+|+|++++++.+..|. ........|++|+..+|..+.
T Consensus 158 DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~~~~ 198 (211)
T PTZ00464 158 DEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPDVPT 198 (211)
T ss_pred CHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCC
Confidence 3455555555555554 323345677888887765543
No 7
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.9e-20 Score=148.79 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=134.6
Q ss_pred CCCCC-----CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH-HH
Q 028201 3 IFSKK-----PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIAN-LQ 76 (212)
Q Consensus 3 ~fg~~-----~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~-l~ 76 (212)
|||+. ++|++ ++-.||.+...| ++|-+.-++++..++...+++.-.. .|..|.++++++|.+++ |.
T Consensus 7 ~FG~~k~~~~~t~~e----aI~kLrEteemL---~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~ 78 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQE----AIQKLRETEEML---EKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLA 78 (221)
T ss_pred HhCcccccCCCChHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 78873 45554 455567776666 4556666667777766644443333 46688898988887765 55
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccc
Q 028201 77 GSRAQIRGIATH---TQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALD 151 (212)
Q Consensus 77 ~~~aql~~v~~~---l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~--~~~~ 151 (212)
+...-|.++..| |++|+.+..+.++|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.++. ..+|
T Consensus 79 qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~D 158 (221)
T KOG1656|consen 79 QIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFD 158 (221)
T ss_pred HHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccC
Confidence 777888888777 56789999999999999999999999999999999999999999999999999999885 3366
Q ss_pred chhhHHHHHHHHHHHHHHhcchhh---hhcccCCCCCCCCC
Q 028201 152 NDEAEEETEELTNQVLDEIGVDVA---SQLSAAPKGKIASK 189 (212)
Q Consensus 152 ~~~~eee~d~~~~~v~~E~~~~~~---~~l~~ap~~~~~~~ 189 (212)
+++...|+|+|-+..++.-.+++. ..||.+|++..|..
T Consensus 159 EDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa~ 199 (221)
T KOG1656|consen 159 EDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPAK 199 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCcc
Confidence 666666666666666666544433 25778887776643
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.87 E-value=6e-20 Score=148.47 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=129.0
Q ss_pred CC-CCCCC-CCh---------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 028201 1 MN-IFSKK-PNP---------KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR 69 (212)
Q Consensus 1 m~-~fg~~-~~p---------ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r 69 (212)
|+ |||++ +.| ++.+.+++..||.+...|++-..+|+....++...+|+++++|+... |..++|.|
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrK 76 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRK 76 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHH
Confidence 76 99975 344 23588999999999999999999999999999999999999998544 67789999
Q ss_pred HHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 028201 70 QQIAN-LQGSRAQIRGI---ATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDT 145 (212)
Q Consensus 70 k~~~~-l~~~~aql~~v---~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~ 145 (212)
|.+++ +.++.+++..+ .+.|+++..+..+..+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.+
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~ 156 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 98875 33555555554 566788999999999999999999999999999999999999999999999999999976
Q ss_pred hhhcccchhhHHHHHHHHHH
Q 028201 146 IDDALDNDEAEEETEELTNQ 165 (212)
Q Consensus 146 ~~~~~~~~~~eee~d~~~~~ 165 (212)
+.+..|+++.++|++++.++
T Consensus 157 ~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 157 LLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 43333444444444444443
No 9
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.81 E-value=2.9e-17 Score=130.41 Aligned_cols=175 Identities=13% Similarity=0.228 Sum_probs=144.8
Q ss_pred CC-CCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HH
Q 028201 1 MN-IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GS 78 (212)
Q Consensus 1 m~-~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~ 78 (212)
|| +||+ +.+---...++..|+.+-+.|.+-.+++++.....+..+|+|++.|....|+.+ ++++++++.|+ ++
T Consensus 1 MG~lfsK-~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlll----LKkKryQE~Ll~qt 75 (209)
T KOG2910|consen 1 MGNLFSK-KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLL----LKKKRYQEELLTQT 75 (209)
T ss_pred CCccccC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHH
Confidence 76 8997 444455677888999999999999999999999999999999999998777755 99999999877 67
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhh
Q 028201 79 RAQIRGIATH---TQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEA 155 (212)
Q Consensus 79 ~aql~~v~~~---l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~ 155 (212)
..||..++.. |+-......++.+++.++.+++++|+.|+++.|+.+|++..+.+++.+.|++|+++.|... +
T Consensus 76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~-----d 150 (209)
T KOG2910|consen 76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAE-----D 150 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-----c
Confidence 7777777655 4557778899999999999999999999999999999999999999999999999998852 3
Q ss_pred HHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 028201 156 EEETEELTNQVLDEIGVDVASQLSAAPKGKIA 187 (212)
Q Consensus 156 eee~d~~~~~v~~E~~~~~~~~l~~ap~~~~~ 187 (212)
++++.++++.+..|...+ .++|.+|+..++
T Consensus 151 Eddi~~EldaLese~~~e--~e~PevPs~ep~ 180 (209)
T KOG2910|consen 151 EDDILAELDALESELEVE--AELPEVPSTEPE 180 (209)
T ss_pred HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCC
Confidence 455555666655555433 678888887543
No 10
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.7e-17 Score=130.29 Aligned_cols=169 Identities=19% Similarity=0.281 Sum_probs=154.3
Q ss_pred CC-CCCCC--CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----
Q 028201 1 MN-IFSKK--PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA---- 73 (212)
Q Consensus 1 m~-~fg~~--~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~---- 73 (212)
|+ |||++ +.|...+.+|+-.+.+..-.++..|.+|+.+..+++.+|++.-...-..+.|..|-.+++.||+|+
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d 80 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD 80 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66 99986 468999999999999999999999999999999999999999777777899999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccch
Q 028201 74 NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 153 (212)
Q Consensus 74 ~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~ 153 (212)
.|+...+.|+.+.+..++...+..++.+|+.+++.|+...+.+++++|...-+++..-|+..++|+|.++..++.. +
T Consensus 81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---e 157 (218)
T KOG1655|consen 81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---D 157 (218)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999988763 2
Q ss_pred hhHHHHHHHHHHHHHHhcc
Q 028201 154 EAEEETEELTNQVLDEIGV 172 (212)
Q Consensus 154 ~~eee~d~~~~~v~~E~~~ 172 (212)
+++++++.+++.+.+|...
T Consensus 158 ide~dL~aELdaL~~E~d~ 176 (218)
T KOG1655|consen 158 IDEADLDAELDALGQELDM 176 (218)
T ss_pred cCHHHHHHHHHHHHhHhhc
Confidence 5678888888888777643
No 11
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.42 E-value=2.5e-11 Score=99.01 Aligned_cols=177 Identities=23% Similarity=0.300 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 28 MEKEIGALQQEEKKLVAEIKRTAKT--GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA 105 (212)
Q Consensus 28 Ldre~~kle~~e~kl~~~ik~a~kk--g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~ 105 (212)
+++++.++-.+.+...+....+.++ ......+++++.+++.++++.+|...+++|.++.+.+....++..+++-|.
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~-- 82 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMA-- 82 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 6667777777766666655554442 255678889999999888888888887777777776666655555555555
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhcc--cchhhHHHHHHHHHHHHHHhcchhhhhcc
Q 028201 106 SKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDAL--DNDEAEEETEELTNQVLDEIGVDVASQLS 179 (212)
Q Consensus 106 ~~~mk~~n~~~~-~~~i~~~m~~f~~e~~~~~~~~---e~m~d~~~~~~--~~~~~eee~d~~~~~v~~E~~~~~~~~l~ 179 (212)
.++..|| ++.|..+|+.|..++..++... |.|.+.++... +..++.+++|++++.|++|+|++......
T Consensus 83 -----~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 83 -----KAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 4455555 6778888888888887777777 66666555544 34567899999999999999999885444
Q ss_pred cCCCC-----CCCCC--C-c----cCCCCccHHHHHHHHHhhcC
Q 028201 180 AAPKG-----KIASK--N-T----EDASSSGIDELEKRLAALRN 211 (212)
Q Consensus 180 ~ap~~-----~~~~~--~-~----~~~~~~~~~~l~~RL~aLr~ 211 (212)
++|.. ..+.. + + .+.+...++.+..||..|++
T Consensus 158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence 44431 11110 0 0 01112347899999999985
No 12
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.9e-10 Score=102.13 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 91 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~ 91 (212)
-.+.-....|+.+.-.|.+++..|+.+-++...+++.+.+.|....|..|++.--+.-|-.+++.....+|++|-.+|.+
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~ 308 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN 308 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999999999999999999999888888777777777778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHh
Q 028201 92 MHAHSSVAVGMKGASKAMAAMNK-QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 170 (212)
Q Consensus 92 a~~~~~~~~am~~~~~~mk~~n~-~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~ 170 (212)
+.++.-+..+++.++.+||.++. ...+++|..+|+++.+-++....++++|+...-...| .+|++++.+++.++.+.
T Consensus 309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d--~~de~lEkEL~~L~~D~ 386 (439)
T KOG2911|consen 309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNID--FEDEDLEKELEDLEADE 386 (439)
T ss_pred hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHhcc
Confidence 99999999999999999999999 5688999999999999999999999999987655333 34677888888777765
Q ss_pred cchhhhhcccCCCC
Q 028201 171 GVDVASQLSAAPKG 184 (212)
Q Consensus 171 ~~~~~~~l~~ap~~ 184 (212)
.-.-.-.+|..|..
T Consensus 387 ~k~e~~~lp~~~~s 400 (439)
T KOG2911|consen 387 KKNEDLVLPLNSVS 400 (439)
T ss_pred ccCCccCCCCCCch
Confidence 44323334544443
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=98.40 E-value=7.1e-05 Score=62.50 Aligned_cols=126 Identities=13% Similarity=0.239 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHHHH
Q 028201 8 PNPKEALRESKREMQH--------------ATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI-------LARQLI 66 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~--------------~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari-------~Ak~lv 66 (212)
-||...++...++++. ..+.++|++..++....+...++..|+.+|+-+-||. |+..+-
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788788777777764 3566888888888888888999999999999998887 777777
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028201 67 RLRQQIAN----LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSA 133 (212)
Q Consensus 67 r~rk~~~~----l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~ 133 (212)
..+.++.. ...+..++..+...|..+.+-..+.-+=..++.+...+|..+.-......|..|..--+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ 173 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFER 173 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 76665543 33456666666777777777666666666666776777666554444555555444333
No 14
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.26 E-value=9.5e-05 Score=60.66 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 35 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA--NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 112 (212)
Q Consensus 35 le~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~ 112 (212)
+++..++.....|...++|.....++-.+.-+++|.... ++..+.++|+.+.++|++...+....-+|. .+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~-------~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMR-------QV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 677778888888888888877666655555666666655 777899999999999988877665554444 44
Q ss_pred HhcCCHHHHHHHHHH------HHHHHHHhhhHHHHHh---hhhhhcccchh--hHHHHHHHHHHHHHHhcchhhhhcc
Q 028201 113 NKQMEPAKQAKVMRE------FQKQSAQMDMTTEMMS---DTIDDALDNDE--AEEETEELTNQVLDEIGVDVASQLS 179 (212)
Q Consensus 113 n~~~~~~~i~~~m~~------f~~e~~~~~~~~e~m~---d~~~~~~~~~~--~eee~d~~~~~v~~E~~~~~~~~l~ 179 (212)
.+. +.+-..+|++ +.+.++.+...=|.+. +.+....+... +..+..+.++..+..+.-+++-.|.
T Consensus 78 ~~~--~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~ 153 (204)
T COG5491 78 SGD--MAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELD 153 (204)
T ss_pred hcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhh
Confidence 444 4444455553 4444555554444444 34444334333 3445555566655555555554443
No 15
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.13 E-value=0.0017 Score=53.75 Aligned_cols=148 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCCChHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 028201 6 KKPNPKEALRE---SKREMQHATRGMEKEIGALQQEEKKL--------VAEIKRTAKTGNEGATKILARQLIRLRQQIAN 74 (212)
Q Consensus 6 ~~~~pke~~r~---~~~~lr~~~r~Ldre~~kle~~e~kl--------~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~ 74 (212)
.++++.+.+.. -...|.+.+..|++++.++...-++. +..+..|+++. |.|=+++-+.-.+..+
T Consensus 12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~K-----K~~E~ql~~l~~q~~n 86 (211)
T PTZ00464 12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQK-----RMYQNQQDMMMQQQFN 86 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 45777766544 44555666777888877776655544 55666677655 6787888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hhHHHHHh--hhhhhccc
Q 028201 75 LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM-DMTTEMMS--DTIDDALD 151 (212)
Q Consensus 75 l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~-~~~~e~m~--d~~~~~~~ 151 (212)
|..+...++..........++..-+.+|++..+-| .+- +++.+..-|.+........ ++++.-+. +.+ |
T Consensus 87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~id---~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~----D 158 (211)
T PTZ00464 87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-NVD---KVEDLQDELADLYEDTQEIQEIMGRAYDVPDDI----D 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----C
Confidence 99999999999999999999999999999988877 344 3688766666544444444 77776553 223 3
Q ss_pred chhhHHHHHHHHHHH
Q 028201 152 NDEAEEETEELTNQV 166 (212)
Q Consensus 152 ~~~~eee~d~~~~~v 166 (212)
+++.++|++++..++
T Consensus 159 EdELe~ELe~Le~e~ 173 (211)
T PTZ00464 159 EDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778888877764
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=98.03 E-value=0.0021 Score=53.45 Aligned_cols=127 Identities=13% Similarity=0.240 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Q 028201 8 PNPKEALRESKREMQHAT--------------RGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL----- 68 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~~~--------------r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~----- 68 (212)
-||...++...++++..+ +.+++++..++....+...+++.|+++|+-+-||-.+..-...
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 578878887777776544 5567778888888888899999999999988666442221111
Q ss_pred --HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028201 69 --RQQIA----NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ 134 (212)
Q Consensus 69 --rk~~~----~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~ 134 (212)
..++. ....+..+|..+..++..+.+...+..+=..++.+-..+|..+.--.+...+..|++-.++
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 11111 2224444555555555556555554444444555555555554333344555555444343
No 17
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.83 E-value=0.006 Score=49.75 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=95.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 21 MQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR-----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAH 95 (212)
Q Consensus 21 lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak-----~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~ 95 (212)
...++-.|..++..|++.+.++..+|..... .||.+.+ .+++.=+....|.....++++..+.|+.+..+
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999876542 1232211 12223333444556667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 028201 96 SSVAVGMKGASKAMAAMNKQMEPAKQAKVM-----REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 169 (212)
Q Consensus 96 ~~~~~am~~~~~~mk~~n~~~~~~~i~~~m-----~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E 169 (212)
...+..=..+..+|+..++. +..+.+-| +++..++...-..++=|++++.....++.+|+|++++++.+..|
T Consensus 100 iE~a~~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 100 LENMHLHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 77776667777888888887 45555432 33444444444455566777876544567899999999998875
No 18
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.006 Score=49.45 Aligned_cols=154 Identities=16% Similarity=0.244 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 11 KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKR-TAK--TGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 87 (212)
Q Consensus 11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~-a~k--kg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~ 87 (212)
+-.+..+.|.|-++...|+-|-++|=.+-++.-+.=-. |.| ..+.-..|.|.+.+...|. ++...+-++.++.+
T Consensus 18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlks 94 (224)
T KOG3230|consen 18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKS 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 34455666777777777777777776666654221110 111 1223345556555555554 34455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhhHHHHHhhhhhhcccchhhHHHHHHHHHHH
Q 028201 88 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ-MDMTTEMMSDTIDDALDNDEAEEETEELTNQV 166 (212)
Q Consensus 88 ~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~-~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v 166 (212)
.-..+.+|.-++++|...++-|.--. +.+|-.-.+.-++.|+- .+++.+.|+|+|++.-++++-|+-+...++.+
T Consensus 95 s~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi 170 (224)
T KOG3230|consen 95 STSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI 170 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 66667777777777776665553222 34444444443444433 25667777777766656666666777777766
Q ss_pred HHHhc
Q 028201 167 LDEIG 171 (212)
Q Consensus 167 ~~E~~ 171 (212)
-=.++
T Consensus 171 Gvdl~ 175 (224)
T KOG3230|consen 171 GVDLA 175 (224)
T ss_pred cccHH
Confidence 55444
No 19
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.45 E-value=0.047 Score=45.21 Aligned_cols=137 Identities=14% Similarity=0.284 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201 8 PNPKEALRESKREMQHA--------------TRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 73 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~~--------------~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~ 73 (212)
-||...++..++++... .+.+.+++..++....+...++..|+++|+-+.|+.++...........
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666544 4566777777778888888888999999999998888776666655443
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhHH
Q 028201 74 NLQ-----------GSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ---MEPAKQAKVMREFQKQSAQMDMTT 139 (212)
Q Consensus 74 ~l~-----------~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~---~~~~~i~~~m~~f~~e~~~~~~~~ 139 (212)
.|. .++.++..+..++.....-..+..+-..++.+-..++.. +++......++.++.....+.-..
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a 181 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARA 181 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence 322 333344444444555555444444444444444444443 334444444444444444444444
Q ss_pred HHHhh
Q 028201 140 EMMSD 144 (212)
Q Consensus 140 e~m~d 144 (212)
+.+.+
T Consensus 182 ~a~~e 186 (221)
T PF04012_consen 182 EASAE 186 (221)
T ss_pred HHHHH
Confidence 44433
No 20
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.39 E-value=0.0015 Score=51.51 Aligned_cols=147 Identities=17% Similarity=0.251 Sum_probs=85.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 24 ATRGMEKEIGALQQEEKKLVAEIKRT---AKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAV 100 (212)
Q Consensus 24 ~~r~Ldre~~kle~~e~kl~~~ik~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~ 100 (212)
++..|...+..|+++..++..+|++. +++--..+-+..|+.+++.++.+.+ ...++.....+|+........+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998764 4444455677889999888886554 44455666677777888788888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHhhhHHH---HHhhhhhhcccchhhHHHHHHHHHHHHHHhcchhh
Q 028201 101 GMKGASKAMAAMNKQMEPAKQAKVMR--EFQKQSAQMDMTTE---MMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVA 175 (212)
Q Consensus 101 am~~~~~~mk~~n~~~~~~~i~~~m~--~f~~e~~~~~~~~e---~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~~~~ 175 (212)
....+..+|+..++. +.++...|+ ++..-++.+....+ .++++|++. .....+.-+++++..++++.-+..
T Consensus 79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~--~~~~~~~dd~ele~eL~~l~~e~~ 154 (171)
T PF03357_consen 79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS--MDQVDDVDDEELEEELEQLEDEIE 154 (171)
T ss_dssp HHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCCCHHHHHHHHHHHHHHHh
Confidence 888888888888877 455554443 33333333332222 233333321 011155666677777777665554
Q ss_pred hh
Q 028201 176 SQ 177 (212)
Q Consensus 176 ~~ 177 (212)
..
T Consensus 155 ~~ 156 (171)
T PF03357_consen 155 EE 156 (171)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 21
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.098 Score=42.81 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=96.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 22 QHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSS 97 (212)
Q Consensus 22 r~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~ 97 (212)
..++-.|..-..-|.+.+.-|..+|-.-.... |+.|+. -++..=|...+|.+.-+|++++.+.|..+.-+..
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555665556666777777788777665443 455543 2444455666788888999999998888776555
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHHHHHhhhHHHHHhhhhhhcccc--hhhHHHHHHHHHHHHHHhcc
Q 028201 98 VAVGMKGASKAMAAMNKQMEPAKQAKVM---REFQKQSAQMDMTTEMMSDTIDDALDN--DEAEEETEELTNQVLDEIGV 172 (212)
Q Consensus 98 ~~~am~~~~~~mk~~n~~~~~~~i~~~m---~~f~~e~~~~~~~~e~m~d~~~~~~~~--~~~eee~d~~~~~v~~E~~~ 172 (212)
-++.=-.+-.+|+..-+.|.--.=.--+ +++..+......+.+-|+++++.-++. +.+|+|+..+++.+.+|.
T Consensus 96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee-- 173 (221)
T KOG1656|consen 96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE-- 173 (221)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH--
Confidence 5555455556666666663322222222 344444444455556677888888873 578999999999999884
Q ss_pred hhhhhccc
Q 028201 173 DVASQLSA 180 (212)
Q Consensus 173 ~~~~~l~~ 180 (212)
+..++-.
T Consensus 174 -ld~~ll~ 180 (221)
T KOG1656|consen 174 -LDKELLD 180 (221)
T ss_pred -HHHHHhc
Confidence 4444443
No 22
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.13 Score=42.24 Aligned_cols=166 Identities=14% Similarity=0.242 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 10 PKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 89 (212)
Q Consensus 10 pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l 89 (212)
|+.-+++..+.+++.+|.=-|++.+.-+.-...+.++++++|.--+.+=+.-++-+. |.+-+-.+.-.+|-.=..+|
T Consensus 8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLA---KEiv~srk~v~Rly~sKAql 84 (227)
T KOG3229|consen 8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILA---KEIVQSRKAVKRLYESKAQL 84 (227)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHHhHHHH
Confidence 566678888888888888888888888888888888888887654433333322222 22222222333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHH---HHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201 90 QAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMRE------FQK---QSAQMDMTTEMMSDTIDDALDNDEAEEETE 160 (212)
Q Consensus 90 ~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~------f~~---e~~~~~~~~e~m~d~~~~~~~~~~~eee~d 160 (212)
++... .|+..-..+.-.+..-+--+|-+.|+. +.. ++.+-=+...+|+..+++.++..++.+|.+
T Consensus 85 nSv~M------~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eeme 158 (227)
T KOG3229|consen 85 NSVSM------QLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEME 158 (227)
T ss_pred hhHHH------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 44322 222222233333332222333333322 222 233333455677778888888777777788
Q ss_pred HHHHHHHHHhcchhh-hhcccCCCC
Q 028201 161 ELTNQVLDEIGVDVA-SQLSAAPKG 184 (212)
Q Consensus 161 ~~~~~v~~E~~~~~~-~~l~~ap~~ 184 (212)
+.++.-.+.+-..+. ..++.+|..
T Consensus 159 Ee~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 159 EEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHHhccccccCCcc
Confidence 888888888877765 345555554
No 23
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.24 Score=39.30 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 11 KEALRESKREMQHATRGMEKEIGALQQEEKKLVA---------EIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQ 81 (212)
Q Consensus 11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~---------~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq 81 (212)
.-.+|...|.|-+.-|.++++-++|+.+-+++-. .+|....-. ....|.||- ..++..+..|
T Consensus 17 ~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lR-kQKtrt~a~--------s~ki~s~~~Q 87 (208)
T KOG3231|consen 17 NRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLR-KQKTRTFAV--------SSKITSMSTQ 87 (208)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH-Hhhhhhhhh--------hhhhhhhHHH
Confidence 3458889999999999999999999999888721 112211100 011233321 1223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHH
Q 028201 82 IRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEE 161 (212)
Q Consensus 82 l~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~ 161 (212)
--.+.+++..+.++..++..|+..++.|.----.-+...++..-. ..+|. -++|.+.++|.|+..-|.++.++-+..
T Consensus 88 nK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anm--KMemT-eEMiNDTLDdild~sgDeeEs~aiVNq 164 (208)
T KOG3231|consen 88 NKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANM--KMEMT-EEMINDTLDDILDGSGDEEESQAIVNQ 164 (208)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHH--HhhhH-HHHHHhhHHHHhcCCCcHHHHHHHHHH
Confidence 344666666667777777778777777643322212233332211 11111 256789999999988777888999999
Q ss_pred HHHHHHHHhcchhhhhcccC
Q 028201 162 LTNQVLDEIGVDVASQLSAA 181 (212)
Q Consensus 162 ~~~~v~~E~~~~~~~~l~~a 181 (212)
.++.+-=|+...+. ..|.+
T Consensus 165 VLDEIGIEisgKma-~~P~a 183 (208)
T KOG3231|consen 165 VLDEIGIEISGKMA-KAPSA 183 (208)
T ss_pred HHHHhhhhhcchhc-cCCcc
Confidence 99999999987654 45643
No 24
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=96.37 E-value=0.42 Score=38.83 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHH-------HHH-HHHHHHHHHHHHHHHH
Q 028201 22 QHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR-QQIA-------NLQ-GSRAQIRGIATHTQAM 92 (212)
Q Consensus 22 r~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r-k~~~-------~l~-~~~aql~~v~~~l~~a 92 (212)
.+.+-+|.+++.+|-+..+++.+.+ +.=|.+|+.|||.. |... +|+ .+-.|.+.--..|+.+
T Consensus 15 DrAIL~lK~QRdkl~qyqkR~e~~l---------e~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm 85 (209)
T KOG2910|consen 15 DRAILSLKTQRDKLKQYQKRLEKQL---------EAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM 85 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776663 44577888999863 3222 222 2223333333345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 028201 93 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125 (212)
Q Consensus 93 ~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m 125 (212)
.+....+..-+.+...++.-|.. +.+++..|
T Consensus 86 vsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~ 116 (209)
T KOG2910|consen 86 VSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEF 116 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 77777788888888888888877 55555443
No 25
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.94 E-value=0.83 Score=38.27 Aligned_cols=126 Identities=13% Similarity=0.242 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201 8 PNPKEALRESKREMQH--------------ATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 73 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~--------------~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~ 73 (212)
-||+..+...+++... ..+.+++++..+.....++..+++.|+.+|+.+-|+-.+...-..-+...
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788777776666543 45778888999999999999999999999997666544333322222111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 028201 74 -----------NLQGSRAQIRGIATHTQAMHA---HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMD 136 (212)
Q Consensus 74 -----------~l~~~~aql~~v~~~l~~a~~---~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~ 136 (212)
...+++.++..+..+|....+ +.....+..+++.-|..+...++. ...|..|..--++..
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie 176 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence 223344444444444443333 333344445555555555555565 455555554444443
No 26
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=95.81 E-value=0.21 Score=39.76 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=92.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSV 98 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~ 98 (212)
..|+..+..|.-..++.....+..+.+|-..++.|+.+.|++-+.++++-.....-|.-+..-.+-+..++.........
T Consensus 2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~ 81 (165)
T PF03398_consen 2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC 81 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34666677777777888888888899999999999999999999999999999888877777777777776665443333
Q ss_pred HHHHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHHHHHHh------hhHHHHHhhhhhhcccchhhHHHHHHHHHHHH
Q 028201 99 AVGMKGASKAMAAMNKQ-MEPAKQAKVMRE----FQKQSAQM------DMTTEMMSDTIDDALDNDEAEEETEELTNQVL 167 (212)
Q Consensus 99 ~~am~~~~~~mk~~n~~-~~~~~i~~~m~~----f~~e~~~~------~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~ 167 (212)
-..++.+...+=-+... -+++++..+=.. |.+++... +.+...+-.-++.... +++.++..+.+|+
T Consensus 82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p---~~~~v~~~L~eIA 158 (165)
T PF03398_consen 82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPP---SEELVEKYLKEIA 158 (165)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCc---CHHHHHHHHHHHH
Confidence 33333333222222222 356655543332 44444322 1112222222222211 3567888888888
Q ss_pred HHhcch
Q 028201 168 DEIGVD 173 (212)
Q Consensus 168 ~E~~~~ 173 (212)
.|+|++
T Consensus 159 ~e~~i~ 164 (165)
T PF03398_consen 159 KEYGIP 164 (165)
T ss_dssp HHCT-S
T ss_pred HHcCCC
Confidence 888764
No 27
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=1.8 Score=34.75 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 71 QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG 104 (212)
Q Consensus 71 ~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~ 104 (212)
...|+....+++.+....-.--.+|..++++|..
T Consensus 71 lssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~ 104 (203)
T KOG3232|consen 71 LSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDS 104 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333344444443
No 28
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=17 Score=29.83 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=38.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH---HHHcCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 24 ATRGMEKEIGALQQEEKKLVAEIKR---TAKTGNEGATKI-LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVA 99 (212)
Q Consensus 24 ~~r~Ldre~~kle~~e~kl~~~ik~---a~kkg~~~~ari-~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~ 99 (212)
.+-.++.-...++..-.+|..++.+ -+++-...-++. +=+.++|.=|+...|...+-+|.+-++-+..++-+.+-.
T Consensus 20 ai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~L 99 (218)
T KOG1655|consen 20 AIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESL 99 (218)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444444444422 233333333332 222244444455555555555555555554443322222
Q ss_pred HHHHHHHHHHHHHHhc
Q 028201 100 VGMKGASKAMAAMNKQ 115 (212)
Q Consensus 100 ~am~~~~~~mk~~n~~ 115 (212)
+--.....+|+..|+.
T Consensus 100 Kdtq~Tv~AmK~~~k~ 115 (218)
T KOG1655|consen 100 KDTQATVAAMKDTNKE 115 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2222233445555544
No 29
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.10 E-value=9.9 Score=27.17 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028201 68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 114 (212)
Q Consensus 68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~ 114 (212)
+++..+||-+...|+.++..-++.-.-...+...+..+..++..++.
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~ 54 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMR 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999888877777777777777776666654
No 30
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=81.36 E-value=17 Score=25.98 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028201 68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ 115 (212)
Q Consensus 68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~ 115 (212)
+++...+|.+...|+.+|..-++.-.....+...+..+-.++..+...
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~ 55 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999988887667777777777666666665543
No 31
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.67 E-value=46 Score=30.53 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=91.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG---NEGATKILARQLIRLRQQIAN-LQGSRAQIRGIATHTQAMHA 94 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg---~~~~ari~Ak~lvr~rk~~~~-l~~~~aql~~v~~~l~~a~~ 94 (212)
..+.-.+-.|-+-..+|.++-..+.++|+++-.+- -.++-|..|...+|.|+-.++ +.+.-+.++.+..=|.+...
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~ 308 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN 308 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566677888888899999999999998765543 335678889999999987764 55677666666665555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHh------hhhhhcccchhhHHHHHHHHHHHHH
Q 028201 95 HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMS------DTIDDALDNDEAEEETEELTNQVLD 168 (212)
Q Consensus 95 ~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~------d~~~~~~~~~~~eee~d~~~~~v~~ 168 (212)
+..=+-+-.+++.-+..++ .|-..+-..++--+.++.+.+.++ ++|.+.. ....+.-|+.+++-++
T Consensus 309 ----s~~nkvvl~AyksGs~alK--~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~de~lEkEL~ 380 (439)
T KOG2911|consen 309 ----SQTNKVVLQAYKSGSEALK--AILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFEDEDLEKELE 380 (439)
T ss_pred ----hcccHHHHHHHHHhHHHHH--HHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccchHHHHHHHH
Confidence 3333455567777776633 333323334444444444444444 3343322 1234677778888777
Q ss_pred Hhcch
Q 028201 169 EIGVD 173 (212)
Q Consensus 169 E~~~~ 173 (212)
++..+
T Consensus 381 ~L~~D 385 (439)
T KOG2911|consen 381 DLEAD 385 (439)
T ss_pred HHHhc
Confidence 77654
No 32
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=76.05 E-value=24 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028201 69 RQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ 115 (212)
Q Consensus 69 rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~ 115 (212)
++-..+|.+...|+.+|..-++.-....++...+..+-.+|..++..
T Consensus 5 ~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~ 51 (85)
T PF02583_consen 5 KDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999988877777777777777777777766643
No 33
>PRK11352 regulator protein FrmR; Provisional
Probab=68.89 E-value=40 Score=24.09 Aligned_cols=47 Identities=9% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028201 68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 114 (212)
Q Consensus 68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~ 114 (212)
+++-..||.+...|+.+|..-++.-.....+...+..+..++..+..
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~ 54 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMA 54 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999888877777777777777777665553
No 34
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.30 E-value=50 Score=29.32 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=35.3
Q ss_pred CC-CCCCC-CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH
Q 028201 1 MN-IFSKK-PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG-----NEGATKILARQLIRL 68 (212)
Q Consensus 1 m~-~fg~~-~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg-----~~~~ari~Ak~lvr~ 68 (212)
|. |||++ ++|.|.+|..+-.|-.-...-+....+...+-.|.-.++|.-+-.. +.+.+..+|.++.+.
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 65 78864 6899998887655544322224555566666666666677665532 334556778888765
No 35
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.75 E-value=1e+02 Score=25.75 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 028201 10 PKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIK 47 (212)
Q Consensus 10 pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik 47 (212)
.-+.+.+-...|...+|+.+.+..++.+...++...-|
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k 55 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQK 55 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566777777777777666666555544433
No 36
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=52.73 E-value=1.2e+02 Score=24.20 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=25.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 4 FSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 4 fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
|+++|.....+.+=+..|+....+.++.....+......+.++..+
T Consensus 46 f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A 91 (184)
T PRK13455 46 FKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREV 91 (184)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443323566666666666666666665555555555555554443
No 37
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=52.21 E-value=35 Score=21.19 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 028201 9 NPKEALRESKREMQHATRGMEKEIGALQQEEKKLVA 44 (212)
Q Consensus 9 ~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~ 44 (212)
..|+.+++.--.|-..+..||.+|..|+.....|..
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888899999999988877666544
No 38
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=50.68 E-value=45 Score=24.24 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 44 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 44 ~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
..+..++..|+.+.|+..++.+-..|+.+.+.+
T Consensus 70 d~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 70 DKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999887654
No 39
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=49.82 E-value=1.1e+02 Score=23.47 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 028201 17 SKREMQHATRGMEKEIGALQQEEKKLVAEIK 47 (212)
Q Consensus 17 ~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik 47 (212)
....+...+..+|++...|+.+.+++...++
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888888877766543
No 40
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.21 E-value=2.2e+02 Score=26.05 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 17 SKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG-NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 91 (212)
Q Consensus 17 ~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg-~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~ 91 (212)
....+...-|++..++..|..+.+++-++|++..+.+ +.+..+. +.+.-..++..+..++..+..++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888999999999999998866655 3222221 2233333444555555555555443
No 41
>PRK09720 cybC cytochrome b562; Provisional
Probab=48.19 E-value=47 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 46 IKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 46 ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
+...+..|+.+.|+..|+++...|+.+-+-|
T Consensus 69 A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 69 ALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999887643
No 42
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.90 E-value=89 Score=20.57 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 28 MEKEIGALQQEEKKLVAEIKRTAKT-GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQ 90 (212)
Q Consensus 28 Ldre~~kle~~e~kl~~~ik~a~kk-g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~ 90 (212)
++.++.+|+++..++...|...-++ +|.....-.-.++|..- ..++..+..++..+...|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~e--r~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKE--REKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887777665443 33322222223334322 2344455555555554443
No 43
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=44.27 E-value=1.3e+02 Score=28.86 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=19.0
Q ss_pred HHHHHHHHH-HhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcc
Q 028201 125 MREFQKQSA-QMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172 (212)
Q Consensus 125 m~~f~~e~~-~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~ 172 (212)
+..+..|.. +.+-|+..+.|.+.. +|.-+.+..+|.|+.==+.-+..
T Consensus 289 L~~L~~qL~nnF~AISssI~dIy~R-Ld~leAdaQVDRLItGRL~aLna 336 (610)
T PF01601_consen 289 LNQLTSQLSNNFGAISSSIQDIYNR-LDQLEADAQVDRLITGRLAALNA 336 (610)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHH----------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHH-HHHHhhcccccccccchHHHHHH
Confidence 334444443 348888888887776 35555677777776654444433
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.82 E-value=88 Score=23.35 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEG 56 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~ 56 (212)
.-+.+-.--+...+..|+++...+++.-..+...++.++..|.+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444555566777777777777777777777777887776543
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=1.1e+02 Score=23.07 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028201 10 PKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKT 52 (212)
Q Consensus 10 pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kk 52 (212)
..+.+++-.-.|...+..|+++..+++.+-++++..|.++...
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555666666666666666666666666666665543
No 46
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.01 E-value=44 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQQEEKK 41 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle~~e~k 41 (212)
..+|.+.|.+.+++++++++..+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666777777776666544
No 47
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=36.76 E-value=75 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 028201 45 EIKRTAKTGNEGATKILARQLIRLRQQIAN 74 (212)
Q Consensus 45 ~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~ 74 (212)
.+.+.+..|+.+.|+.-|+.+.-.|+.|.+
T Consensus 68 ~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 68 KADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999988754
No 48
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.92 E-value=1.6e+02 Score=20.79 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 20 EMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 87 (212)
Q Consensus 20 ~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~ 87 (212)
.|+.++...+.++.+++...+.++++.|...++- .++...+|+.--+-++|+--
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~e--------------RK~RtHRLi~rGa~lEsi~~ 58 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKE--------------RKERTHRLIERGAILESIFP 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhHHHHHHhh
Confidence 4566666777777777777777777777776621 12222367777777777654
No 49
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=34.00 E-value=3.7e+02 Score=24.51 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 028201 33 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA-SKAMAA 111 (212)
Q Consensus 33 ~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~-~~~mk~ 111 (212)
+|=+...++++..|-..++.|..+.|++-+..+||--+.+.-|.-+--=.+-|..++.....+...-..++.+ +.+|=.
T Consensus 11 nKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifA 90 (388)
T KOG2027|consen 11 NKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFA 90 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHH
Confidence 3445556778888999999999999999999999999988766655555566666666655555444444432 334444
Q ss_pred HHhcCCHHHHHHHHHHHHH----HHHHhh--------hHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcchh
Q 028201 112 MNKQMEPAKQAKVMREFQK----QSAQMD--------MTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV 174 (212)
Q Consensus 112 ~n~~~~~~~i~~~m~~f~~----e~~~~~--------~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~~~ 174 (212)
+-+.-+++++..+=+-|.. ++...- +-..+|.. |..... +.+-...++-.|+.|+++..
T Consensus 91 A~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiek-Ls~~~P---~~e~k~k~lkEIA~ey~v~~ 161 (388)
T KOG2027|consen 91 APRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEK-LSVEAP---PKELKEKYLKEIAKEYNVNW 161 (388)
T ss_pred hccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHH-hcCCCC---cHHHHHHHHHHHHHHhCCCc
Confidence 4455567777766555443 333321 11112222 111111 23446888899999988754
No 50
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.86 E-value=1.8e+02 Score=20.80 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=42.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG-NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQ 90 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg-~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~ 90 (212)
..+...-|.+..++..+..+.+.+-.+|..+.+.| +.+..+. +.+.-...+..+..++..+..++.
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~------e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKA------EVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999887 4333332 222223334445555555555444
No 51
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.05 E-value=79 Score=20.69 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcc
Q 028201 119 AKQAKVMREFQKQSAQMDMTTEMMSDTIDDAL 150 (212)
Q Consensus 119 ~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~ 150 (212)
..+...|.++...++.+..|.+.+.+ ++.++
T Consensus 8 ~eL~D~~~~L~~n~~~L~~ihesL~~-FNESF 38 (58)
T PF08653_consen 8 AELSDSMETLDKNMEQLNQIHESLSD-FNESF 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45667788888888888888887776 55443
No 52
>PLN03086 PRLI-interacting factor K; Provisional
Probab=31.55 E-value=4.8e+02 Score=25.09 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 28 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHS 96 (212)
Q Consensus 28 Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~ 96 (212)
|.+-+.|++++.++=+.++|.-+.+-. -.-.++.+.|..++...+.+ +|++++.++.....+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 67 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERER-----KAKEEAAKQREAIEAAQRSR-RLDAIEAQIKADQQMQ 67 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334455666666655555543332221 11122333444444433333 6777777766444433
No 53
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=31.33 E-value=1.5e+02 Score=19.38 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 34 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 34 kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
-|+....+++.-+-.|-..||.+.||.| +|.=|+++..+
T Consensus 3 ~L~~R~~~yk~Aa~~AK~~gd~~kAr~~----~R~~K~~~~~I 41 (59)
T smart00685 3 LLQQRQEQYKQAALQAKRAGDEEKARRH----LRIAKQFDDAI 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHhhHHHHH
Confidence 3566667777777788889999999877 66555555433
No 54
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.13 E-value=4.1e+02 Score=24.22 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 16 ESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 91 (212)
Q Consensus 16 ~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~ 91 (212)
+....+...-|++..++..|..+.+++-++|+...+.++..... -+.+.+.-..++..+..++..+..++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE----IKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888888765555321111 1122333334555555566666555544
No 55
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.00 E-value=3.2e+02 Score=22.98 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201 26 RGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 73 (212)
Q Consensus 26 r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~ 73 (212)
-+|.++|++|++- +.+||.-+..+++.... .|+..|+.++
T Consensus 45 ~DLKkEIKKLQR~----RdQIK~W~~~~diKdk~----~L~e~Rk~IE 84 (233)
T PF04065_consen 45 ADLKKEIKKLQRL----RDQIKTWLSSNDIKDKK----KLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHH----HHHHHHHccCcccccHH----HHHHHHHHHH
Confidence 3566788888765 45555555656554322 2466666554
No 56
>PRK15058 cytochrome b562; Provisional
Probab=30.92 E-value=1.2e+02 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=26.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 46 IKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 46 ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
+...+..|+.+.|+..++++...|++|.+-|
T Consensus 97 a~~la~~GkL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 97 ALKLANEGKVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566889999999999999999999886543
No 57
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.36 E-value=72 Score=16.89 Aligned_cols=18 Identities=6% Similarity=0.351 Sum_probs=12.2
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQ 36 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle 36 (212)
..+|..+++|+++...|-
T Consensus 4 ~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777778877776653
No 58
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=27.86 E-value=2.7e+02 Score=21.05 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=19.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028201 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQ 36 (212)
Q Consensus 2 ~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle 36 (212)
+||...| ..+.+|.+...|......|..+-.+..
T Consensus 56 ~LfP~~~-~~e~vr~~L~~L~~~~~~Lq~eC~~~~ 89 (123)
T PF12205_consen 56 ALFPKDP-RSETVRSSLRQLTSSAYRLQAECQKAQ 89 (123)
T ss_dssp HTS-SSB---HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HhCCCcc-CChHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4787654 346788887777777666665554443
No 59
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.28 E-value=2.8e+02 Score=22.29 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEK 40 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~ 40 (212)
.++.....+|..++++|++++.+|+.-..
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~ 144 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQS 144 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544433
No 60
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=26.68 E-value=2e+02 Score=19.19 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 028201 26 RGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQG 77 (212)
Q Consensus 26 r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~ 77 (212)
-.|..-...++.....+...+..+...++.+.|+.+ |+.-++..++..
T Consensus 27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~----~~kLky~~kl~~ 74 (78)
T PF07743_consen 27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKEA----LRKLKYLQKLLE 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH----HHHHHHHHHHHH
Confidence 445555667777777788888899989998777644 666677776653
No 61
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=2.3e+02 Score=21.34 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 14 LRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 14 ~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
-.++.-.|......|+..++.|+++++++..++++.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788899999999999999999998887754
No 62
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.46 E-value=1.6e+02 Score=28.08 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201 25 TRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 73 (212)
Q Consensus 25 ~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~ 73 (212)
.-+|.|||+||+|. +.+||.-+...++.-. ..|+-.|+-++
T Consensus 44 e~DLKkEIKKLQRl----RdQIKtW~ss~dIKDK----~~L~d~RrlIE 84 (575)
T KOG2150|consen 44 ESDLKKEIKKLQRL----RDQIKTWQSSSDIKDK----DSLLDNRRLIE 84 (575)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhcccccccH----HHHHHHHHHHH
Confidence 34677888888875 4555555555555433 33456665443
No 63
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.20 E-value=3.5e+02 Score=21.88 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 028201 10 PKEALRESKREMQHATRGMEKEIGALQQEEKKLV 43 (212)
Q Consensus 10 pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~ 43 (212)
.-+.+.+-...|+..+|+++..+.++...-....
T Consensus 17 ~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~ 50 (221)
T PF04012_consen 17 LLDKAEDPEKMLEQAIRDMEEQLRKARQALARVM 50 (221)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567778888888888877776655543
No 64
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=26.20 E-value=1.8e+02 Score=22.98 Aligned_cols=42 Identities=7% Similarity=0.262 Sum_probs=12.3
Q ss_pred CCCCCCC--CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 028201 1 MNIFSKK--PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAE 45 (212)
Q Consensus 1 m~~fg~~--~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ 45 (212)
++|||.| .++++.+.... .+-.++++||..-+++--++...+
T Consensus 80 lklaGykeqittkDeie~qm---drivkemrrQlemidkLTtREiEQ 123 (173)
T PF01452_consen 80 LKLAGYKEQITTKDEIEKQM---DRIVKEMRRQLEMIDKLTTREIEQ 123 (173)
T ss_dssp ---------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCcHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3588876 45666655433 233344444444444443333333
No 65
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=26.00 E-value=3.1e+02 Score=21.10 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHhcch
Q 028201 155 AEEETEELTNQVLDEIGVD 173 (212)
Q Consensus 155 ~eee~d~~~~~v~~E~~~~ 173 (212)
.++|+...|.+++.++|..
T Consensus 92 seeEi~~~v~~~i~e~ga~ 110 (143)
T PF09424_consen 92 SEEEIEAIVEEAIAELGAS 110 (143)
T ss_dssp -HHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999864
No 66
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.95 E-value=2e+02 Score=18.92 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=26.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 028201 19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR 63 (212)
Q Consensus 19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak 63 (212)
..++.++..|++++..+..+-..++.++...- ++.+...-+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~--~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK--NDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 35566677777777777777777777666542 24544444444
No 67
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=25.84 E-value=2.1e+02 Score=21.58 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=29.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 028201 24 ATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61 (212)
Q Consensus 24 ~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~ 61 (212)
..+.++-+...|++.+..++.+|+...+.-+...+-.+
T Consensus 73 ~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 73 QLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45788888999999999999999987776655444444
No 68
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=25.03 E-value=1.9e+02 Score=20.94 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhH----HHHHhhhhhhcccchhhHHHHHHHHHHHHH
Q 028201 102 MKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMT----TEMMSDTIDDALDNDEAEEETEELTNQVLD 168 (212)
Q Consensus 102 m~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~----~e~m~d~~~~~~~~~~~eee~d~~~~~v~~ 168 (212)
+...+..|..+ ..++.+.+..++.+|.......+.+ .+.+.+.+..+++ ++.+..+++++..
T Consensus 35 i~~i~~~ma~l-~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg----~~~a~~il~~~~~ 100 (108)
T PF14842_consen 35 IERISREMAKL-GSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALG----EEKAKEILDRLEQ 100 (108)
T ss_dssp HHHHHHHHHT------HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS-------HHHHH------
T ss_pred HHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCC----HHHHHHHHHHHhc
Confidence 45566666666 3578889999999998855544322 2344444444443 3455555555543
No 69
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.69 E-value=5.4e+02 Score=23.51 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=16.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 21 MQHATRGMEKEIGALQQEEKKLVAEIKRTAK 51 (212)
Q Consensus 21 lr~~~r~Ldre~~kle~~e~kl~~~ik~a~k 51 (212)
++.....|.+++..+..+..+++..+....+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344445555555555555555555554444
No 70
>PRK06798 fliD flagellar capping protein; Validated
Probab=24.52 E-value=4.3e+02 Score=24.31 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=9.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 028201 23 HATRGMEKEIGALQQEEKKLV 43 (212)
Q Consensus 23 ~~~r~Ldre~~kle~~e~kl~ 43 (212)
...+.|+.++.+++.+...+.
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e 399 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDID 399 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 71
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=1.9e+02 Score=21.44 Aligned_cols=38 Identities=37% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCCCCCCChHHHHHH---HHHHHHHHhhhHHHHHHHHHHHH
Q 028201 1 MNIFSKKPNPKEALRE---SKREMQHATRGMEKEIGALQQEE 39 (212)
Q Consensus 1 m~~fg~~~~pke~~r~---~~~~lr~~~r~Ldre~~kle~~e 39 (212)
|++|--|-.| +.+++ |-+..+.+.|.|...+..|.-++
T Consensus 1 MRiftlkEa~-e~~~el~P~l~d~~~~~r~~~n~~e~L~~qe 41 (123)
T COG4911 1 MRIFTLKEAP-ETARELLPWLRDRLIQLRKIKNEIELLLVQE 41 (123)
T ss_pred CceeehhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6777765333 44433 66666667777766666665554
No 72
>PRK07737 fliD flagellar capping protein; Validated
Probab=23.78 E-value=4.6e+02 Score=24.56 Aligned_cols=21 Identities=10% Similarity=0.389 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028201 27 GMEKEIGALQQEEKKLVAEIK 47 (212)
Q Consensus 27 ~Ldre~~kle~~e~kl~~~ik 47 (212)
.|.++++.++++...+..++.
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~ 465 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLK 465 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444443
No 73
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.37 E-value=4.5e+02 Score=22.12 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=31.3
Q ss_pred CChHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 8 PNPKEALR-ESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 8 ~~pke~~r-~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
.+|.+.-+ ++..=|...+.+|.+|+..++.+-.++...-++-
T Consensus 113 ~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKk 155 (233)
T PF04065_consen 113 LDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKK 155 (233)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 36765543 3555578999999999999999988887765433
No 74
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=22.68 E-value=3.8e+02 Score=21.05 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 15 RESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 91 (212)
Q Consensus 15 r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~ 91 (212)
+=|+.....-....++++.+|-+ .+..+|.-+++.+.++.+.. -+.|....+...+...+..+.+++.+
T Consensus 69 kYWK~eFe~Y~~~a~~Em~KLi~----yk~~aKsyAkkKD~Ea~~L~----~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 69 KYWKEEFESYHEKAEKEMEKLIK----YKQLAKSYAKKKDAEAMRLA----EKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33655554444444444444433 34556666767776666633 33455556666666666665555433
No 75
>PRK07857 hypothetical protein; Provisional
Probab=22.19 E-value=2.9e+02 Score=20.34 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 028201 18 KREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGN 54 (212)
Q Consensus 18 ~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~ 54 (212)
...+|.++.+||+++-+|-.+--.+-.+|-+.-+..+
T Consensus 30 L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3458999999999999999998888777766555443
No 76
>PRK13694 hypothetical protein; Provisional
Probab=22.12 E-value=2.9e+02 Score=19.43 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHH
Q 028201 30 KEIGALQQEEKKLVAEIKR--TAKTGNEGATKILARQLIRLRQQI 72 (212)
Q Consensus 30 re~~kle~~e~kl~~~ik~--a~kkg~~~~ari~Ak~lvr~rk~~ 72 (212)
--|.+|+.+.+-+-..||. +-.+|+---.+++ +++|+.||+-
T Consensus 19 ERIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~-r~ii~lRK~d 62 (83)
T PRK13694 19 ERIERLEEEKKTISDDIKDVYAEAKGNGFDVKAL-KTIIRLRKKD 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHcCC
Confidence 4455788888888888874 2233332233433 5779888753
No 77
>PF13655 RVT_N: N-terminal domain of reverse transcriptase
Probab=21.95 E-value=2.9e+02 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 028201 34 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL 68 (212)
Q Consensus 34 kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~ 68 (212)
++++.-.+++..|-+|.+.||...++-+-+-+++.
T Consensus 8 k~~~~V~rLQ~RI~kA~~~g~~~~v~~LQklL~~S 42 (84)
T PF13655_consen 8 KVERKVFRLQKRIYKASQEGDWKKVRKLQKLLLRS 42 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 56667777888899999999998888776666544
No 78
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=21.93 E-value=43 Score=23.65 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=13.0
Q ss_pred CCCCC--CChHHHHHHHHHHHHHHhhhHHHHHH
Q 028201 3 IFSKK--PNPKEALRESKREMQHATRGMEKEIG 33 (212)
Q Consensus 3 ~fg~~--~~pke~~r~~~~~lr~~~r~Ldre~~ 33 (212)
+||.+ |+---.+-.+.+.+|+..+.+..+..
T Consensus 18 lFGp~KLP~~~r~lGk~ir~FK~~~~~~~~d~~ 50 (84)
T PRK00191 18 LFGAKKLPDAARSIGRSMRIFKSEVKEMSKDDQ 50 (84)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 57754 22223333344444444444443333
No 79
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.93 E-value=3.4e+02 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 028201 155 AEEETEELTNQVLDEIGV 172 (212)
Q Consensus 155 ~eee~d~~~~~v~~E~~~ 172 (212)
.+.-+++-|.+++..+|+
T Consensus 75 le~~~~~~v~~~L~~lg~ 92 (118)
T TIGR01837 75 LEKAFDERVEQALNRLNI 92 (118)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 345556666666666654
No 80
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.85 E-value=3.2e+02 Score=19.76 Aligned_cols=76 Identities=7% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 028201 69 RQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSD 144 (212)
Q Consensus 69 rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d 144 (212)
......+..+..++..+..++............+...+++.+.+...+=...+..+..++.+..+.++..-..+..
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777777777777777777777777777888888877654455666666777766666444333333
No 81
>PF06502 Equine_IAV_S2: Equine infectious anaemia virus S2 protein; InterPro: IPR009480 This family consists of several equine infectious anaemia virus S2 proteins. The function of this family is unknown.
Probab=21.72 E-value=40 Score=22.38 Aligned_cols=6 Identities=50% Similarity=1.005 Sum_probs=2.5
Q ss_pred CCCCCC
Q 028201 1 MNIFSK 6 (212)
Q Consensus 1 m~~fg~ 6 (212)
|+|||+
T Consensus 1 mglfg~ 6 (67)
T PF06502_consen 1 MGLFGK 6 (67)
T ss_pred CccccC
Confidence 344443
No 82
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=6.6e+02 Score=23.24 Aligned_cols=69 Identities=25% Similarity=0.344 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 028201 17 SKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL-RQQIANLQGSRAQIRGIATHTQ 90 (212)
Q Consensus 17 ~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aql~~v~~~l~ 90 (212)
-...|....|.+.++...|+.+.+.+-++|.++.++|.. ++..++.. +.-..++......++.+...++
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345567777778888888888888888888877776654 33333333 2222344445555555554443
No 83
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.28 E-value=3.4e+02 Score=19.90 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 11 KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
...++++...+......|+.++..++.....+...+..+
T Consensus 75 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 75 RKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777777666666665544
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.85 E-value=7e+02 Score=23.38 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 9 NPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 9 ~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
||.+.+|... -+.|++.+++..+..+-+.++.+-...
T Consensus 56 TP~DTlrTlv----a~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 56 TPADTLRTLV----AEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred CccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543 344455555555555555555444433
Done!