Query 028201
Match_columns 212
No_of_seqs 123 out of 728
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 7.3E-51 2.5E-55 334.6 11.9 202 7-211 5-218 (218)
2 2gd5_A Charged multivesicular 100.0 3.5E-45 1.2E-49 294.4 5.2 179 2-184 1-179 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.9 9.8E-11 3.4E-15 74.0 -1.8 49 159-211 2-50 (50)
4 3um3_B Charged multivesicular 98.8 2.8E-08 9.7E-13 72.0 8.3 75 115-189 2-82 (104)
5 3frt_A Charged multivesicular 98.5 8.8E-08 3E-12 78.4 4.2 154 8-170 2-164 (218)
6 4abm_A Charged multivesicular 97.9 0.00039 1.3E-08 47.7 11.9 74 13-91 3-77 (79)
7 2gd5_A Charged multivesicular 97.5 5.3E-05 1.8E-09 60.0 3.7 148 20-170 11-164 (179)
8 2luh_B Vacuolar protein-sortin 97.2 0.00019 6.3E-09 46.2 3.0 54 116-169 1-54 (59)
9 3frr_A Uncharacterized protein 97.0 0.045 1.5E-06 43.6 15.2 166 3-175 3-180 (191)
10 2v6x_B DOA4-independent degrad 95.6 0.0024 8E-08 40.6 0.2 14 198-211 39-52 (54)
11 3ggy_A Increased sodium tolera 95.3 0.84 2.9E-05 36.2 14.2 158 14-175 9-185 (193)
12 3ggz_E Vacuolar protein-sortin 94.3 0.038 1.3E-06 30.1 2.7 18 194-211 12-29 (29)
13 2xze_Q Charged multivesicular 94.0 0.006 2.1E-07 36.1 -0.9 14 198-211 27-40 (40)
14 2lxm_B Charged multivesicular 89.9 0.16 5.4E-06 32.3 2.0 38 132-172 1-38 (57)
15 2hh7_A Hypothetical protein CS 78.4 16 0.00056 26.4 8.6 47 68-114 9-55 (119)
16 3twe_A Alpha4H; unknown functi 73.2 1.7 5.7E-05 22.4 1.4 14 198-211 9-22 (27)
17 3um3_B Charged multivesicular 72.0 14 0.00048 26.1 6.6 53 126-181 9-63 (104)
18 3aai_A Copper homeostasis oper 70.0 21 0.00071 24.7 7.1 47 68-114 13-60 (94)
19 4adz_A CSOR; transcription, co 68.7 29 0.001 25.7 7.9 48 67-114 50-97 (136)
20 1t3j_A Mitofusin 1; coiled coi 41.7 85 0.0029 21.7 6.4 31 11-41 42-72 (96)
21 1wyy_A E2 glycoprotein; membra 38.4 1.2E+02 0.0041 22.5 7.2 66 96-165 32-99 (149)
22 1gp8_A Protein (scaffolding pr 35.9 62 0.0021 18.6 3.8 26 40-65 11-36 (40)
23 1upk_A MO25 protein; transfera 35.2 1.5E+02 0.0052 25.2 8.0 66 1-68 3-77 (341)
24 4abm_A Charged multivesicular 33.4 1E+02 0.0036 20.3 8.6 28 21-48 4-31 (79)
25 1wrd_A TOM1, target of MYB pro 33.4 87 0.003 21.7 5.3 44 100-143 16-64 (103)
26 1naf_A ADP-ribosylation factor 32.1 1.1E+02 0.0036 23.2 5.9 98 71-171 36-139 (158)
27 1a92_A Delta antigen; leucine 30.8 76 0.0026 19.1 3.8 32 12-44 4-35 (50)
28 2ke4_A CDC42-interacting prote 30.3 1.3E+02 0.0046 20.6 7.9 51 21-74 20-73 (98)
29 1yzm_A FYVE-finger-containing 27.2 1.1E+02 0.0037 18.6 6.4 41 36-76 8-48 (51)
30 2r6a_C DNAG primase, helicase 27.1 1.6E+02 0.0054 20.5 7.9 39 34-72 102-140 (143)
31 2lw1_A ABC transporter ATP-bin 26.8 31 0.0011 23.2 1.9 33 15-47 14-46 (89)
32 2w6b_A RHO guanine nucleotide 25.7 1.2E+02 0.0042 18.7 5.8 14 38-51 39-52 (56)
33 2l5g_B Putative uncharacterize 25.6 1.1E+02 0.0036 17.9 4.9 26 23-48 9-34 (42)
34 3mud_A DNA repair protein XRCC 24.2 2.4E+02 0.0083 21.6 6.7 32 8-39 120-151 (175)
35 1oxz_A ADP-ribosylation factor 23.7 2.5E+02 0.0086 21.6 7.1 75 98-173 77-157 (186)
36 3mq9_A Bone marrow stromal ant 23.3 3.5E+02 0.012 23.1 11.7 22 7-28 368-389 (471)
37 4fm3_A Uncharacterized hypothe 23.3 1.9E+02 0.0065 20.0 10.3 59 7-66 2-61 (98)
38 1z0k_B FYVE-finger-containing 22.2 1.7E+02 0.0057 18.9 6.8 39 37-75 27-65 (69)
39 2jx0_A ARF GTPase-activating p 20.6 1.1E+02 0.0036 22.6 3.8 33 2-35 61-93 (135)
40 2aze_B Transcription factor E2 20.5 1.1E+02 0.0037 21.4 3.7 24 25-48 8-31 (106)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-51 Score=334.62 Aligned_cols=202 Identities=26% Similarity=0.421 Sum_probs=140.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 7 KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIA 86 (212)
Q Consensus 7 ~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~ 86 (212)
++||+|++|+|++.||++.|+|+|++.+|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+
T Consensus 5 ~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~ 84 (218)
T 3frt_A 5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL 84 (218)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHH
Q 028201 87 THTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQV 166 (212)
Q Consensus 87 ~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v 166 (212)
++|+++.++.+++++|++++++|+.+|+.||+++|+.+|++|++|++++|+++|||+|+|++.++++++++++|++|++|
T Consensus 85 ~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV 164 (218)
T 3frt_A 85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (218)
T ss_dssp HHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888778899999999999
Q ss_pred HHHhcchhhhhcccCCCC---CCCCCCc------c---CCCCccHHHHHHHHHhhcC
Q 028201 167 LDEIGVDVASQLSAAPKG---KIASKNT------E---DASSSGIDELEKRLAALRN 211 (212)
Q Consensus 167 ~~E~~~~~~~~l~~ap~~---~~~~~~~------~---~~~~~~~~~l~~RL~aLr~ 211 (212)
++|+|.+ +|+.+|++ .+|.+.. + ++.++.+++|++||+|||+
T Consensus 165 ldEi~~~---~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 165 LFEITAG---ALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp HHTC-----------------------------------------------------
T ss_pred HHHHhHh---HhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 9999964 45555543 2222110 0 1122346789999999995
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=3.5e-45 Score=294.36 Aligned_cols=179 Identities=27% Similarity=0.408 Sum_probs=141.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQ 81 (212)
Q Consensus 2 ~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq 81 (212)
|+|+ +|||+|.+|+|++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||.|+++.+|+.++++
T Consensus 1 ~~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~ 79 (179)
T 2gd5_A 1 GAMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAH 79 (179)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4676 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHH
Q 028201 82 IRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEE 161 (212)
Q Consensus 82 l~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~ 161 (212)
|++|.++|+++.++..++++|++++++|+.+|+.||+++|..+|++|+++++++++++|+|+++|+++++++++++++++
T Consensus 80 l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~ 159 (179)
T 2gd5_A 80 MNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM 159 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred HHHHHHHHhcchhhhhcccCCCC
Q 028201 162 LTNQVLDEIGVDVASQLSAAPKG 184 (212)
Q Consensus 162 ~~~~v~~E~~~~~~~~l~~ap~~ 184 (212)
++++|++|+|+ ++||.+|++
T Consensus 160 ~v~kVl~E~~~---~~l~~~P~~ 179 (179)
T 2gd5_A 160 EIDRILFEITA---GALGKAPSK 179 (179)
T ss_dssp HHHHTTCCC--------------
T ss_pred HHHHHHHHhhH---hhcccCCCC
Confidence 99999999985 478888763
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.86 E-value=9.8e-11 Score=74.04 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcchhhhhcccCCCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201 159 TEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211 (212)
Q Consensus 159 ~d~~~~~v~~E~~~~~~~~l~~ap~~~~~~~~~~~~~~~~~~~l~~RL~aLr~ 211 (212)
+|++++||+||+|+++..+|+.+|.+.++.. ....++|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----VASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CHHHHHH----HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhcccccccccCCC----CCcccHHHHHHHHHHHhC
Confidence 6789999999999999999999987654321 123468999999999995
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.77 E-value=2.8e-08 Score=72.05 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hcccchhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCCCCC
Q 028201 115 QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA----SQLSAAPKGKIAS 188 (212)
Q Consensus 115 ~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~--~~~~~~~~eee~d~~~~~v~~E~~~~~~----~~l~~ap~~~~~~ 188 (212)
.|++++|..+|+++..++++.+.|+++|+.+++ ..+|+++.+.|++.+....+++-.++++ ..||.+|++.+|.
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~ 81 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS 81 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence 589999999999999999999999999999874 2344444555555555555555333332 3589999887764
Q ss_pred C
Q 028201 189 K 189 (212)
Q Consensus 189 ~ 189 (212)
.
T Consensus 82 ~ 82 (104)
T 3um3_B 82 K 82 (104)
T ss_pred C
Confidence 3
No 5
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.48 E-value=8.8e-08 Score=78.40 Aligned_cols=154 Identities=12% Similarity=0.216 Sum_probs=76.8
Q ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 028201 8 PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEI---KRTAKTGNEGATKILARQLIRL-RQQIANLQGSRAQIR 83 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~i---k~a~kkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aql~ 83 (212)
++|+..+++. +|...|.|.+..+.|+++..++...= +..+|+--..+-. +.+|. =+...+..+...++-
T Consensus 2 ~~~~~~p~e~---~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~----~~arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 2 HMQEKPPKEL---VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK----DVCIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp ------CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555 56666777777777777777765543 3334332221111 12221 123345556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhHHHHHhhhhhhcccchhhHHH
Q 028201 84 GIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEE 158 (212)
Q Consensus 84 ~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m--~~f~~e~~~~---~~~~e~m~d~~~~~~~~~~~eee 158 (212)
.+.++|++.....+...++..++..|+.+... ...+...| .++..-|.++ -+.-+++++.|++.+++..++++
T Consensus 75 ~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~ 152 (218)
T 3frt_A 75 ASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCC
Confidence 88889999888888888888888888887777 45555555 5555555555 33334666778887766554455
Q ss_pred HHHHHHHHHHHh
Q 028201 159 TEELTNQVLDEI 170 (212)
Q Consensus 159 ~d~~~~~v~~E~ 170 (212)
.+++++.+.+.+
T Consensus 153 ~eee~d~~v~kV 164 (218)
T 3frt_A 153 MEEEAEMEIDRI 164 (218)
T ss_dssp CTTSTTTHHHHH
T ss_pred chHHHHHHHHHH
Confidence 555556555543
No 6
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.88 E-value=0.00039 Score=47.73 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 028201 13 ALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GSRAQIRGIATHTQA 91 (212)
Q Consensus 13 ~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~~v~~~l~~ 91 (212)
.+.+++..||.+...|+.....|+..-......+|+++ .+| +.-|..++|.||+++..+ ++.+++.+++.++.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999998888888889888 555 346788899999998754 899999999988765
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.53 E-value=5.3e-05 Score=60.01 Aligned_cols=148 Identities=11% Similarity=0.184 Sum_probs=82.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 20 EMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR-QQIANLQGSRAQIRGIATHTQAMHAHSSV 98 (212)
Q Consensus 20 ~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~~v~~~l~~a~~~~~~ 98 (212)
.||...+.|.+.++.|+++..++..+-++....= ..+++--.....|.. +...+..+...+|....++|++.....+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999877766442211 112221112222222 23334446777888888999999888888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHH---HHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHh
Q 028201 99 AVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQ---SAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 170 (212)
Q Consensus 99 ~~am~~~~~~mk~~n~~~~~~~i~~~m--~~f~~e---~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~ 170 (212)
..++..++.+|+..... +..+...| +++..- |++.-..-+++++.|++.+++..++++.+++++.+++.+
T Consensus 90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 88888888888877766 34444444 444444 444444445568888888876555556666666665554
No 8
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00019 Score=46.16 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 028201 116 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 169 (212)
Q Consensus 116 ~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E 169 (212)
+|+++|..+++++...++..+.|+++++.+++....++.++++++++++.+.+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 578999999999999999999999999999876433456789999999988877
No 9
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=96.98 E-value=0.045 Score=43.56 Aligned_cols=166 Identities=9% Similarity=0.093 Sum_probs=106.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQI 82 (212)
Q Consensus 3 ~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql 82 (212)
+||++..+ -+++..|+..+..|.-..+|-....++.+.+|-..++.|..+.||+-+.++||-....+=|.-+.--.
T Consensus 3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC 78 (191)
T 3frr_A 3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC 78 (191)
T ss_dssp -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68876553 35666677777777677777777788889999999999999999999999999999888776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc-CCHHHHHHHHH----HHHHHHHHh------hhHHHHHhhhhhhcc
Q 028201 83 RGIATHTQAMHAHSSVAVGMKGASKA-MAAMNKQ-MEPAKQAKVMR----EFQKQSAQM------DMTTEMMSDTIDDAL 150 (212)
Q Consensus 83 ~~v~~~l~~a~~~~~~~~am~~~~~~-mk~~n~~-~~~~~i~~~m~----~f~~e~~~~------~~~~e~m~d~~~~~~ 150 (212)
+-+..++.....+...-..++.+... +=...+. -+++++..+=+ .|.+++... +-+.+.+-.-++...
T Consensus 79 elL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~~~ 158 (191)
T 3frr_A 79 DLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEA 158 (191)
T ss_dssp HHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCCSC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCCCC
Confidence 66666665554433333334433333 3333443 57777765443 345555433 112222222233222
Q ss_pred cchhhHHHHHHHHHHHHHHhcchhh
Q 028201 151 DNDEAEEETEELTNQVLDEIGVDVA 175 (212)
Q Consensus 151 ~~~~~eee~d~~~~~v~~E~~~~~~ 175 (212)
. +.+-++..+..|+.++|++..
T Consensus 159 P---~~~lv~~yL~EIA~~y~V~w~ 180 (191)
T 3frr_A 159 P---PKILVERYLIEIAKNYNVPYE 180 (191)
T ss_dssp C---CHHHHHHHHHHHHHHHTCCCC
T ss_pred c---CHHHHHHHHHHHHHHcCCCCC
Confidence 2 356788899999999988653
No 10
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0024 Score=40.56 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.9
Q ss_pred cHHHHHHHHHhhcC
Q 028201 198 GIDELEKRLAALRN 211 (212)
Q Consensus 198 ~~~~l~~RL~aLr~ 211 (212)
.+|||++||++||.
T Consensus 39 ~ddDLQARLdsLRR 52 (54)
T 2v6x_B 39 PDDDLQARLNTLKK 52 (54)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhcc
Confidence 68999999999986
No 11
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=95.28 E-value=0.84 Score=36.19 Aligned_cols=158 Identities=11% Similarity=0.082 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 14 LRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 93 (212)
Q Consensus 14 ~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~ 93 (212)
.-+++..|+..+..|.-..+|-....+..+.+|-..++.|..+.||+-+.++||-.....-|.-+.--.+-+..++....
T Consensus 9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~ 88 (193)
T 3ggy_A 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVIN 88 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888889999999999999999999999999999988766665555555555554433
Q ss_pred H--------HHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHH----HHHHHHHHHh------hhHHHHHhhhhhhcccchh
Q 028201 94 A--------HSSVAVGMKGASKAMA-AMNKQMEPAKQAKVM----REFQKQSAQM------DMTTEMMSDTIDDALDNDE 154 (212)
Q Consensus 94 ~--------~~~~~~am~~~~~~mk-~~n~~~~~~~i~~~m----~~f~~e~~~~------~~~~e~m~d~~~~~~~~~~ 154 (212)
. ....-..++.+...+= ...+..+++++..+= ..|.++|... ++-..++ .-++....
T Consensus 89 ~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv-~kLs~~~P--- 164 (193)
T 3ggy_A 89 DISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKII-KKCSPSVP--- 164 (193)
T ss_dssp TCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHH-HHHSCCCC---
T ss_pred hhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHH-HHcCCCCc---
Confidence 3 2222333444333333 333335777776443 3344444432 2222222 22332222
Q ss_pred hHHHHHHHHHHHHHHhcchhh
Q 028201 155 AEEETEELTNQVLDEIGVDVA 175 (212)
Q Consensus 155 ~eee~d~~~~~v~~E~~~~~~ 175 (212)
+.+-++..+..|+.++|++.+
T Consensus 165 ~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 165 KEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CHHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC
Confidence 356788999999999998754
No 12
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.038 Score=30.08 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHhhcC
Q 028201 194 ASSSGIDELEKRLAALRN 211 (212)
Q Consensus 194 ~~~~~~~~l~~RL~aLr~ 211 (212)
..++.+|.|.+||+|||.
T Consensus 12 ~~eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALRG 29 (29)
T ss_pred ccchhhHHHHHHHHHHcC
Confidence 345678999999999994
No 13
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=93.99 E-value=0.006 Score=36.06 Aligned_cols=14 Identities=36% Similarity=0.760 Sum_probs=11.7
Q ss_pred cHHHHHHHHHhhcC
Q 028201 198 GIDELEKRLAALRN 211 (212)
Q Consensus 198 ~~~~l~~RL~aLr~ 211 (212)
++..|+.||+|||+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 34679999999996
No 14
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=89.92 E-value=0.16 Score=32.31 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=15.1
Q ss_pred HHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcc
Q 028201 132 SAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 172 (212)
Q Consensus 132 ~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~ 172 (212)
|+..+.|+++++.+++.. +.+|++++++++.+.+|...
T Consensus 1 ~e~a~EIqealsr~~g~~---diDEdEL~aELe~LeqE~~~ 38 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP---ELDEDDLEAELDALGDELLA 38 (57)
T ss_dssp ---------------CCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHhh
Confidence 355678899999887532 34577788888777777643
No 15
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=78.41 E-value=16 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028201 68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 114 (212)
Q Consensus 68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~ 114 (212)
+++...||.+...|+.+|..-|+.-.....+...+..+..++..++.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~ 55 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANR 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999998888777777777777777777776654
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=73.16 E-value=1.7 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.6
Q ss_pred cHHHHHHHHHhhcC
Q 028201 198 GIDELEKRLAALRN 211 (212)
Q Consensus 198 ~~~~l~~RL~aLr~ 211 (212)
+.++|+.||+.||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999873
No 17
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=72.04 E-value=14 Score=26.11 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhhccc--chhhHHHHHHHHHHHHHHhcchhhhhcccC
Q 028201 126 REFQKQSAQMDMTTEMMSDTIDDALD--NDEAEEETEELTNQVLDEIGVDVASQLSAA 181 (212)
Q Consensus 126 ~~f~~e~~~~~~~~e~m~d~~~~~~~--~~~~eee~d~~~~~v~~E~~~~~~~~l~~a 181 (212)
+++..++...-..++=|+++++..++ +..++++++++++.+.++. +..++..+
T Consensus 9 e~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~---l~~~~l~~ 63 (104)
T 3um3_B 9 DELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE---LDKNLLEI 63 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH---HHHHhhcc
Confidence 44555555555566677888888774 3567999999999999884 45555544
No 18
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=70.04 E-value=21 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 028201 68 LRQQIANLQGSRAQIRGIATHTQAMH-AHSSVAVGMKGASKAMAAMNK 114 (212)
Q Consensus 68 ~rk~~~~l~~~~aql~~v~~~l~~a~-~~~~~~~am~~~~~~mk~~n~ 114 (212)
+++...+|-+...|+.+|..-++.-. ....+...+..+..++..++.
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~ 60 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGE 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999998888776 777777777777777776654
No 19
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=68.70 E-value=29 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028201 67 RLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 114 (212)
Q Consensus 67 r~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~ 114 (212)
.+++...||.+...|+.+|..-|+.-.....+...+..+..++..++.
T Consensus 50 ~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~ 97 (136)
T 4adz_A 50 QKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFAL 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455566788899999999998888766677777777777777766664
No 20
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.72 E-value=85 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 028201 11 KEALRESKREMQHATRGMEKEIGALQQEEKK 41 (212)
Q Consensus 11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~k 41 (212)
..+++....+|..++++|+++|..|+.-...
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665554433
No 21
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=38.36 E-value=1.2e+02 Score=22.54 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHH
Q 028201 96 SSVAVGMKGASKAMAAMNKQMEP--AKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQ 165 (212)
Q Consensus 96 ~~~~~am~~~~~~mk~~n~~~~~--~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~ 165 (212)
..+..++..++.++.++..-+|- ..+...|..+.. +.+-|+..+.|.+.. +|.-+.+..+|.++.=
T Consensus 32 ~~~~~g~~tts~AL~kiQ~VVN~q~~aL~~l~~qL~~---nFgAISssi~dIy~r-Ld~leAdaQVDRLItG 99 (149)
T 1wyy_A 32 SQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS---NFGAISSVLNDILSR-LDKVEAEVQIDRLITG 99 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 34555566666666665554322 223344444333 346777777777665 2333445566666543
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=35.90 E-value=62 Score=18.57 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 028201 40 KKLVAEIKRTAKTGNEGATKILARQL 65 (212)
Q Consensus 40 ~kl~~~ik~a~kkg~~~~ari~Ak~l 65 (212)
..++++|--|...||.++++.+-.++
T Consensus 11 ~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 11 DAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34667799999999999999775554
No 23
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=35.23 E-value=1.5e+02 Score=25.20 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=33.8
Q ss_pred CCCCCCC-CChHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHH
Q 028201 1 MNIFSKK-PNPKEALRESKREMQHATRGM---EKEIGALQQEEKKLVAEIKRTAKT-----GNEGATKILARQLIRL 68 (212)
Q Consensus 1 m~~fg~~-~~pke~~r~~~~~lr~~~r~L---dre~~kle~~e~kl~~~ik~a~kk-----g~~~~ari~Ak~lvr~ 68 (212)
|. ||++ ++|.+.+|..+-.|-.-. .. ++...+.+.+-.|...++|.-+-. .+.+.+..+|+++.+.
T Consensus 3 m~-F~~~~ktP~elVr~l~d~l~~l~-~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 3 FP-FGKSHKSPADIVKNLKESMAVLE-KQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp --------CCHHHHHHHHHHHHHHHH-C---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCHHHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 67 8865 689988877654443221 11 022244555666666666665542 2456777788887765
No 24
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=33.45 E-value=1e+02 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 028201 21 MQHATRGMEKEIGALQQEEKKLVAEIKR 48 (212)
Q Consensus 21 lr~~~r~Ldre~~kle~~e~kl~~~ik~ 48 (212)
.+.++-.|..++..|++.++.+..+|-.
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~ 31 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQ 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999888763
No 25
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=33.42 E-value=87 Score=21.69 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHh-hhHHHHHh
Q 028201 100 VGMKGASKAMAAMNKQMEPA----KQAKVMREFQKQSAQM-DMTTEMMS 143 (212)
Q Consensus 100 ~am~~~~~~mk~~n~~~~~~----~i~~~m~~f~~e~~~~-~~~~e~m~ 143 (212)
..++...++|..|-..+++. .=..++.++-..+..+ --+..+++
T Consensus 16 ~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~ 64 (103)
T 1wrd_A 16 EMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIP 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666553 2235666666666655 33344444
No 26
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=32.12 E-value=1.1e+02 Score=23.15 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-----HHHHHHHHHHHHh-hhHHHHHhh
Q 028201 71 QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQA-----KVMREFQKQSAQM-DMTTEMMSD 144 (212)
Q Consensus 71 ~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~-----~~m~~f~~e~~~~-~~~~e~m~d 144 (212)
..++|.+.-+.=+. .+.+-..--..-...++..+.+|..|-..+++..-. .++.++-..+..+ --+..++++
T Consensus 36 ~AN~LiK~m~~~d~--~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 36 AANKLIKEMVQEDQ--KRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566654443332 222222222224455667788888888877765332 6788888888877 555666665
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHhc
Q 028201 145 TIDDALDNDEAEEETEELTNQVLDEIG 171 (212)
Q Consensus 145 ~~~~~~~~~~~eee~d~~~~~v~~E~~ 171 (212)
+-++. +.-..--.+.+.+++|+..+.
T Consensus 114 ~~dde-e~L~elL~~ND~Ln~vl~kY~ 139 (158)
T 1naf_A 114 TEDND-EALAEILQANDNLTQVINLYK 139 (158)
T ss_dssp CCSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCH-HHHHHHHHhhHHHHHHHHHHH
Confidence 32210 000112355666777777764
No 27
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=30.83 E-value=76 Score=19.09 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEKKLVA 44 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~ 44 (212)
+.+.+|. .-|+..++|+|.+++..+.-++++.
T Consensus 4 e~LeqWv-~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 4 DILEQWV-SGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556664 3466677777777777776666654
No 28
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.26 E-value=1.3e+02 Score=20.64 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHHHH
Q 028201 21 MQHATRGMEKEIGALQQEEKKLVAEIKRTAKT---GNEGATKILARQLIRLRQQIAN 74 (212)
Q Consensus 21 lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kk---g~~~~ari~Ak~lvr~rk~~~~ 74 (212)
|...+.+|.++|.+..+...-+.+-+..-.++ ||..++ +.++....+.+..
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~ 73 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIER 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHH
Confidence 45666677777777766666666666555554 454443 4455544444443
No 29
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.17 E-value=1.1e+02 Score=18.61 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 36 QQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 36 e~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
..+..-++.-|+.|.+.|..+-+.++..++=..+..+.++.
T Consensus 8 ~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567779999999999999999988887777766554
No 30
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=27.12 E-value=1.6e+02 Score=20.45 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 028201 34 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQI 72 (212)
Q Consensus 34 kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~ 72 (212)
.+.++..++..+|..+...|+.+...-++.++++.++..
T Consensus 102 ~~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 102 PKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 344555666777888888999988888888888777643
No 31
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.82 E-value=31 Score=23.20 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 028201 15 RESKREMQHATRGMEKEIGALQQEEKKLVAEIK 47 (212)
Q Consensus 15 r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik 47 (212)
++.++..++....|+..|.+|+.+...+..++-
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777788888888887777766653
No 32
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.67 E-value=1.2e+02 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 028201 38 EEKKLVAEIKRTAK 51 (212)
Q Consensus 38 ~e~kl~~~ik~a~k 51 (212)
--+.++.-+++.++
T Consensus 39 ARk~LE~~vrk~~k 52 (56)
T 2w6b_A 39 ARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444555444
No 33
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.60 E-value=1.1e+02 Score=17.89 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=15.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 028201 23 HATRGMEKEIGALQQEEKKLVAEIKR 48 (212)
Q Consensus 23 ~~~r~Ldre~~kle~~e~kl~~~ik~ 48 (212)
..+..++|+|.+-+.+-..++.+.+.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666554
No 34
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.17 E-value=2.4e+02 Score=21.58 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028201 8 PNPKEALRESKREMQHATRGMEKEIGALQQEE 39 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e 39 (212)
++|.|.+|+.+.--=+.+..|++++.+|+-+-
T Consensus 120 ~~paE~ireli~~AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 120 ENPAEVIRELICYCLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999888876444444445555555555443
No 35
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.68 E-value=2.5e+02 Score=21.59 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHh-hhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhc
Q 028201 98 VAVGMKGASKAMAAMNKQMEPAK-----QAKVMREFQKQSAQM-DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIG 171 (212)
Q Consensus 98 ~~~am~~~~~~mk~~n~~~~~~~-----i~~~m~~f~~e~~~~-~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~ 171 (212)
-...++..+.+|..|...+++.. =..++.++-..+..+ --+..+++++-++. +.-..--.+.+.+++|+..+.
T Consensus 77 eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~dde-e~L~elL~~ND~Ln~vl~kY~ 155 (186)
T 1oxz_A 77 AIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDND-EALAEILQANDNLTQVINLYK 155 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHhhHHHHHHHHHHH
Confidence 45556777888888887775532 147888888888888 55666776542210 000112456677888888875
Q ss_pred ch
Q 028201 172 VD 173 (212)
Q Consensus 172 ~~ 173 (212)
.=
T Consensus 156 ~~ 157 (186)
T 1oxz_A 156 QL 157 (186)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.30 E-value=3.5e+02 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=14.8
Q ss_pred CCChHHHHHHHHHHHHHHhhhH
Q 028201 7 KPNPKEALRESKREMQHATRGM 28 (212)
Q Consensus 7 ~~~pke~~r~~~~~lr~~~r~L 28 (212)
+.||.+.++++...++..+.++
T Consensus 368 ~~t~eeal~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 368 RQTVDEALKDAQTRITAARDGL 389 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 4578888887777666555444
No 37
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=23.30 E-value=1.9e+02 Score=20.00 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 028201 7 KPNPKEALRESKREMQHATRGMEKE-IGALQQEEKKLVAEIKRTAKTGNEGATKILARQLI 66 (212)
Q Consensus 7 ~~~pke~~r~~~~~lr~~~r~Ldre-~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lv 66 (212)
-|.|.++++.+...|....+-=-.+ .-.|..-.. -....+.++..++...||.||.+..
T Consensus 2 ~PaP~eql~~te~Ai~~A~~aga~~~apEl~~A~d-Kl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 2 DPAPLEQMRLTEQALEQAKAVGATDDVAELKLAQD-KYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCCcccccHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3778999999888887654321000 112222222 2346788999999999999988753
No 38
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=22.16 E-value=1.7e+02 Score=18.95 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 028201 37 QEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANL 75 (212)
Q Consensus 37 ~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l 75 (212)
.+..-++.-|+.|.+.+..+-+.++..++=.....+.++
T Consensus 27 EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 27 QQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 334455667889999999999999988887777766654
No 39
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=20.60 E-value=1.1e+02 Score=22.60 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028201 2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGAL 35 (212)
Q Consensus 2 ~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kl 35 (212)
.||..+| +.+.+|.+.+.|......|..+-.++
T Consensus 61 aLfp~~p-~~etvr~sL~~L~~~a~~Lq~EC~~~ 93 (135)
T 2jx0_A 61 SLFPKRP-ALEPVRSSLRLLNASAYRLQSECRKT 93 (135)
T ss_dssp HTSCSSB-CCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhcCCCC-CchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4787665 67888888877777777776666555
No 40
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.49 E-value=1.1e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 028201 25 TRGMEKEIGALQQEEKKLVAEIKR 48 (212)
Q Consensus 25 ~r~Ldre~~kle~~e~kl~~~ik~ 48 (212)
.+.|..++..|+.+|+.|...|+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~ 31 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNI 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666665555543
Done!