Query 028201
Match_columns 212
No_of_seqs 123 out of 728
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 12:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028201.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028201hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 51.6 15 0.0011 24.1 5.5 34 43-76 72-105 (106)
2 d256ba_ a.24.3.1 (A:) Cytochro 42.9 31 0.0023 22.4 6.0 38 98-135 3-40 (106)
3 d2csga1 b.82.2.12 (A:3-419) Hy 35.4 41 0.003 27.4 6.7 46 8-53 10-55 (417)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 35.0 25 0.0018 22.8 4.4 38 12-49 68-105 (107)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 26.0 58 0.0042 18.8 7.1 24 28-51 2-25 (66)
6 d1o3xa_ a.7.8.1 (A:) ADP-ribos 21.2 1E+02 0.0074 19.9 6.6 13 123-135 56-68 (112)
7 d2azeb1 e.63.1.2 (B:201-301) T 20.3 67 0.0049 20.6 4.3 23 27-49 5-27 (101)
8 d1ng6a_ a.182.1.1 (A:) Hypothe 20.1 1.2E+02 0.0091 20.5 10.6 19 155-173 96-114 (148)
9 d2gyqa1 a.25.1.4 (A:1-160) Hyp 20.0 1.3E+02 0.0096 20.7 10.4 69 1-83 1-71 (160)
10 d2jdig1 c.49.2.1 (G:1-272) ATP 18.1 44 0.0032 24.8 3.4 26 81-106 2-27 (272)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=51.62 E-value=15 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 028201 43 VAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 76 (212)
Q Consensus 43 ~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 76 (212)
...|..++..|+.+.|+..+.++-..|+.|.+.+
T Consensus 72 ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 72 IDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4567888999999999999999999999887654
No 2
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=42.92 E-value=31 Score=22.40 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 028201 98 VAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM 135 (212)
Q Consensus 98 ~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~ 135 (212)
+...|+....+++.+.+.-+++.|...|++|...+...
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d~ 40 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 55678888888889999999999999999999887764
No 3
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=35.42 E-value=41 Score=27.43 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 028201 8 PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG 53 (212)
Q Consensus 8 ~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg 53 (212)
+++...+++.++.||.....+..--.+|+..-++...+|+...++|
T Consensus 10 ~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G 55 (417)
T d2csga1 10 ADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQG 55 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999998776555
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.99 E-value=25 Score=22.75 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028201 12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a 49 (212)
+.+.+-.-.|...+..|++++..++.+-..+...+.++
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555443
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.01 E-value=58 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 28 MEKEIGALQQEEKKLVAEIKRTAK 51 (212)
Q Consensus 28 Ldre~~kle~~e~kl~~~ik~a~k 51 (212)
++.++.+|+++..++...|...-+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~ 25 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQR 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777665443
No 6
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.17 E-value=1e+02 Score=19.90 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 028201 123 KVMREFQKQSAQM 135 (212)
Q Consensus 123 ~~m~~f~~e~~~~ 135 (212)
.++.+|-..+..+
T Consensus 56 ell~eL~~~c~~~ 68 (112)
T d1o3xa_ 56 DLMKELYQRCERM 68 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555544
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.35 E-value=67 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028201 27 GMEKEIGALQQEEKKLVAEIKRT 49 (212)
Q Consensus 27 ~Ldre~~kle~~e~kl~~~ik~a 49 (212)
.|..++..|+.+|+.|...|+.+
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~ 27 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNIC 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544433
No 8
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=20.10 E-value=1.2e+02 Score=20.48 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHhcch
Q 028201 155 AEEETEELTNQVLDEIGVD 173 (212)
Q Consensus 155 ~eee~d~~~~~v~~E~~~~ 173 (212)
+++|++.+|.+++.|.|..
T Consensus 96 seeEl~~~v~~~i~e~~a~ 114 (148)
T d1ng6a_ 96 SEEELRTIVNETIAEVGAS 114 (148)
T ss_dssp CHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 4689999999999998763
No 9
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=19.98 E-value=1.3e+02 Score=20.71 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCCCCCC-CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 1 MNIFSKK-PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAK-TGNEGATKILARQLIRLRQQIANLQGS 78 (212)
Q Consensus 1 m~~fg~~-~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~k-kg~~~~ari~Ak~lvr~rk~~~~l~~~ 78 (212)
|++|.+. .|+++..-.+-+.+-...+++ .+. ..+.++ ..+++-...+..-+-..++++.+|...
T Consensus 1 m~~~~~~~~tl~dlfi~~L~d~y~aE~q~-----------~~a---l~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~i 66 (160)
T d2gyqa1 1 MGFFSRDIQTMEDLLLHGLRDIYYAEQQI-----------TKA---LPKMIEQATNRDLSQGLTSHLEETQKQIERLDQV 66 (160)
T ss_dssp CCTTTTCBCSHHHHHHHHHHHHHHHHHHH-----------HHH---HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHH-----------HHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899865 678888888865554333222 222 222222 345666667777788888888887766
Q ss_pred HHHHH
Q 028201 79 RAQIR 83 (212)
Q Consensus 79 ~aql~ 83 (212)
-..++
T Consensus 67 ~~~lg 71 (160)
T d2gyqa1 67 FKKLG 71 (160)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 55544
No 10
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.10 E-value=44 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201 81 QIRGIATHTQAMHAHSSVAVGMKGAS 106 (212)
Q Consensus 81 ql~~v~~~l~~a~~~~~~~~am~~~~ 106 (212)
.|..+..++.+..++.+++++|+-++
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVA 27 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVA 27 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777778888877554
Done!