Query 028202
Match_columns 212
No_of_seqs 203 out of 1229
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 4.7E-33 1E-37 232.1 13.1 117 90-208 1-118 (167)
2 PRK10304 ferritin; Provisional 100.0 9.2E-32 2E-36 223.3 13.3 118 90-209 1-119 (165)
3 cd00904 Ferritin Ferritin iron 100.0 2.7E-31 5.9E-36 218.0 13.2 118 92-209 1-120 (160)
4 COG1528 Ftn Ferritin-like prot 100.0 1.4E-29 3.1E-34 210.7 12.7 118 90-209 1-119 (167)
5 cd01056 Euk_Ferritin eukaryoti 100.0 3.1E-29 6.8E-34 205.4 13.6 119 92-210 1-121 (161)
6 KOG2332 Ferritin [Inorganic io 99.9 3.5E-28 7.5E-33 204.4 8.5 122 82-207 4-131 (178)
7 cd01055 Nonheme_Ferritin nonhe 99.9 7.8E-25 1.7E-29 176.6 13.2 116 92-209 1-117 (156)
8 PRK10635 bacterioferritin; Pro 99.9 4.5E-23 9.7E-28 170.3 12.9 118 91-210 3-120 (158)
9 TIGR00754 bfr bacterioferritin 99.9 2.8E-21 6.2E-26 157.3 12.9 116 92-209 4-119 (157)
10 cd00907 Bacterioferritin Bacte 99.8 1.2E-18 2.5E-23 139.6 12.7 116 92-209 3-118 (153)
11 COG2193 Bfr Bacterioferritin ( 99.8 3.5E-18 7.5E-23 140.4 12.4 118 91-210 3-120 (157)
12 cd01041 Rubrerythrin Rubreryth 99.8 4.2E-18 9E-23 135.4 10.8 109 95-210 2-112 (134)
13 PF00210 Ferritin: Ferritin-li 99.7 4.7E-17 1E-21 126.0 9.7 112 96-210 1-118 (142)
14 cd01052 DPSL DPS-like protein, 99.7 1.1E-15 2.4E-20 121.6 12.0 116 92-210 4-130 (148)
15 cd01046 Rubrerythrin_like rubr 99.6 1.5E-14 3.3E-19 114.4 10.6 100 95-210 2-101 (123)
16 PRK13456 DNA protection protei 99.0 3.9E-09 8.6E-14 89.9 11.8 115 92-209 18-143 (186)
17 cd01043 DPS DPS protein, ferri 98.9 1.7E-08 3.7E-13 80.2 9.2 111 98-210 2-121 (139)
18 cd00657 Ferritin_like Ferritin 98.4 3.4E-06 7.3E-11 61.6 10.0 61 98-163 2-62 (130)
19 cd07908 Mn_catalase_like Manga 98.3 1.1E-05 2.4E-10 65.2 11.7 69 91-162 10-81 (154)
20 PRK09448 DNA starvation/statio 97.7 0.0006 1.3E-08 56.6 11.2 113 92-209 20-141 (162)
21 PF02915 Rubrerythrin: Rubrery 97.5 0.0019 4.1E-08 49.3 10.4 62 97-161 1-62 (137)
22 cd01045 Ferritin_like_AB Uncha 97.3 0.0011 2.3E-08 50.6 7.2 55 97-156 1-55 (139)
23 cd01051 Mn_catalase Manganese 96.9 0.026 5.6E-07 46.7 11.9 62 93-158 19-83 (156)
24 cd01044 Ferritin_CCC1_N Ferrit 96.4 0.013 2.8E-07 46.0 7.1 58 98-160 2-59 (125)
25 COG0783 Dps DNA-binding ferrit 96.2 0.088 1.9E-06 43.9 10.9 115 93-209 14-136 (156)
26 PF09537 DUF2383: Domain of un 95.5 0.11 2.3E-06 39.6 8.1 64 94-162 1-64 (111)
27 COG1592 Rubrerythrin [Energy p 95.3 0.069 1.5E-06 45.1 7.1 61 94-156 4-64 (166)
28 COG1633 Uncharacterized conser 95.3 0.19 4E-06 42.5 9.7 64 91-159 21-84 (176)
29 COG2406 Protein distantly rela 94.0 0.95 2E-05 38.0 10.5 114 93-209 16-140 (172)
30 cd01042 DMQH Demethoxyubiquino 93.2 0.48 1E-05 39.8 7.7 95 105-207 11-117 (165)
31 TIGR02284 conserved hypothetic 92.1 0.59 1.3E-05 37.8 6.6 61 96-161 2-62 (139)
32 cd01041 Rubrerythrin Rubreryth 89.6 3.7 8E-05 32.3 8.9 60 93-154 72-132 (134)
33 cd01046 Rubrerythrin_like rubr 87.5 2.7 6E-05 32.9 6.9 59 93-153 62-120 (123)
34 PF13668 Ferritin_2: Ferritin- 87.0 11 0.00024 29.4 10.2 95 96-196 3-106 (137)
35 PF12902 Ferritin-like: Ferrit 85.5 3.9 8.5E-05 35.9 7.4 63 99-163 1-63 (227)
36 PF03232 COQ7: Ubiquinone bios 84.4 3.4 7.4E-05 34.9 6.3 97 104-207 12-123 (172)
37 cd07910 MiaE MiaE tRNA-modifyi 83.9 8.6 0.00019 33.0 8.5 68 94-167 18-85 (180)
38 PF02915 Rubrerythrin: Rubrery 82.7 7.9 0.00017 29.1 7.3 52 94-150 84-135 (137)
39 COG2941 CAT5 Ubiquinone biosyn 80.4 8.9 0.00019 33.4 7.4 116 79-200 22-151 (204)
40 cd01055 Nonheme_Ferritin nonhe 80.0 11 0.00025 29.9 7.7 59 94-154 80-138 (156)
41 cd07908 Mn_catalase_like Manga 79.0 8.2 0.00018 30.9 6.5 55 92-151 99-153 (154)
42 PF04305 DUF455: Protein of un 78.6 20 0.00044 32.0 9.5 113 93-210 65-187 (253)
43 cd00907 Bacterioferritin Bacte 78.0 19 0.00042 28.3 8.3 58 93-152 80-137 (153)
44 cd01045 Ferritin_like_AB Uncha 77.6 12 0.00026 28.0 6.8 56 91-151 83-138 (139)
45 cd00657 Ferritin_like Ferritin 75.7 17 0.00036 25.7 6.8 53 94-151 77-129 (130)
46 PRK12775 putative trifunctiona 69.9 14 0.00031 38.9 7.2 56 93-153 859-914 (1006)
47 COG1633 Uncharacterized conser 66.3 39 0.00084 28.5 7.9 63 88-155 107-169 (176)
48 PF07875 Coat_F: Coat F domain 64.2 45 0.00097 23.0 7.7 55 98-157 5-59 (64)
49 PRK10635 bacterioferritin; Pro 59.0 56 0.0012 26.9 7.5 60 91-152 79-138 (158)
50 PF00210 Ferritin: Ferritin-li 57.3 77 0.0017 23.7 7.5 59 94-154 80-138 (142)
51 cd01048 Ferritin_like_AB2 Unch 56.2 1E+02 0.0022 24.5 8.7 54 97-158 3-56 (135)
52 PRK12775 putative trifunctiona 55.6 41 0.00088 35.6 7.4 57 95-155 942-998 (1006)
53 TIGR00754 bfr bacterioferritin 53.4 1.2E+02 0.0025 24.3 8.4 59 93-153 81-139 (157)
54 COG3546 Mn-containing catalase 51.6 66 0.0014 29.4 7.1 64 92-160 18-84 (277)
55 PF05974 DUF892: Domain of unk 49.0 1.4E+02 0.003 24.4 8.3 63 93-160 4-66 (159)
56 PF05067 Mn_catalase: Manganes 46.3 61 0.0013 29.7 6.2 60 92-155 18-80 (283)
57 smart00055 FCH Fes/CIP4 homolo 42.9 40 0.00087 24.0 3.7 29 126-154 24-52 (87)
58 PF11860 DUF3380: Protein of u 40.5 55 0.0012 27.8 4.7 59 96-156 77-135 (175)
59 PRK10304 ferritin; Provisional 40.5 1.8E+02 0.0039 24.0 7.7 63 94-156 82-145 (165)
60 PRK13456 DNA protection protei 40.5 1.6E+02 0.0035 25.4 7.6 58 94-154 107-164 (186)
61 cd01044 Ferritin_CCC1_N Ferrit 39.6 1.3E+02 0.0028 23.2 6.4 47 96-153 78-124 (125)
62 PF06175 MiaE: tRNA-(MS[2]IO[6 39.2 2.1E+02 0.0046 25.7 8.3 73 93-167 26-137 (240)
63 cd01051 Mn_catalase Manganese 39.1 1.3E+02 0.0028 24.8 6.6 61 90-155 95-155 (156)
64 PF00611 FCH: Fes/CIP4, and EF 35.6 59 0.0013 23.0 3.6 30 126-155 24-53 (91)
65 cd07610 FCH_F-BAR The Extended 32.5 91 0.002 25.3 4.7 35 126-160 15-49 (191)
66 COG2833 Uncharacterized protei 31.5 4E+02 0.0087 24.2 9.2 74 91-169 72-145 (268)
67 PF11553 DUF3231: Protein of u 30.3 2.9E+02 0.0064 22.3 8.8 41 128-168 124-164 (166)
68 cd07647 F-BAR_PSTPIP The F-BAR 28.5 97 0.0021 26.8 4.4 31 126-156 20-50 (239)
69 PRK13184 pknD serine/threonine 27.3 2.4E+02 0.0051 30.1 7.6 119 63-207 560-691 (932)
70 cd07652 F-BAR_Rgd1 The F-BAR ( 25.5 1.5E+02 0.0033 25.8 5.1 32 126-157 20-51 (234)
71 PF06744 DUF1215: Protein of u 24.9 2.5E+02 0.0054 21.8 5.8 81 86-166 22-106 (125)
72 cd07651 F-BAR_PombeCdc15_like 24.7 91 0.002 26.8 3.6 33 126-158 20-52 (236)
73 cd01052 DPSL DPS-like protein, 24.7 3.3E+02 0.0071 21.0 6.7 56 92-150 91-146 (148)
74 KOG0859 Synaptobrevin/VAMP-lik 24.7 4.9E+02 0.011 23.0 8.3 79 68-162 80-158 (217)
75 PF10097 DUF2335: Predicted me 24.4 1.7E+02 0.0036 19.8 4.1 29 126-154 12-40 (50)
76 cd07648 F-BAR_FCHO The F-BAR ( 23.9 1.7E+02 0.0037 25.4 5.2 34 126-159 20-53 (261)
77 cd01050 Acyl_ACP_Desat Acyl AC 22.9 3.7E+02 0.008 24.7 7.3 71 90-162 55-126 (297)
78 COG4445 MiaE Hydroxylase for s 21.3 4.9E+02 0.011 22.6 7.1 65 98-168 32-96 (203)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=232.14 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=110.9
Q ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC
Q 028202 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~ 169 (212)
+.+++++++||+|||.|++|||+|++||+||+ +.+|||||+||+.||+|||+||+||++|+++|||+|.+++|++|+.
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 46789999999999999999999999999998 5599999999999999999999999999999999999999999999
Q ss_pred cCccccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Q 028202 170 EFDHAEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVIL 208 (212)
Q Consensus 170 e~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~ 208 (212)
+|+++.. ++..+.+|+.++..|+++...+.+++||.+.-
T Consensus 79 ~~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~ 118 (167)
T PRK15022 79 KLNSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLN 118 (167)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHH
Confidence 9999865 88889999999999999999999999999864
No 2
>PRK10304 ferritin; Provisional
Probab=99.97 E-value=9.2e-32 Score=223.31 Aligned_cols=118 Identities=20% Similarity=0.358 Sum_probs=112.1
Q ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC
Q 028202 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~ 169 (212)
+++++++++||+|||.||+|+|+|++|++||+ +|||+|||+||+++|.|||+||+||++||++|||+|++++|++|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 47899999999999999999999999999999 7799999999999999999999999999999999999999999999
Q ss_pred cCccccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 170 EFDHAEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 170 e~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+|+++.. ++..+.+|..++..|++++..|.+++||++..+
T Consensus 79 ~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~f 119 (165)
T PRK10304 79 EYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNF 119 (165)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHH
Confidence 9999865 888899999999999999999999999998754
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=99.97 E-value=2.7e-31 Score=218.02 Aligned_cols=118 Identities=43% Similarity=0.641 Sum_probs=111.6
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC-c
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-E 170 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~-e 170 (212)
+++|+++||+|||.|++|||+|++||+||++++|||+|||+||+++|+|||+||++|++||++|||+|+++.|++|.. +
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE 80 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred Cccccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 171 FDHAEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 171 ~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
|+++.. ++..+.+|+.++..|++++..|.+++|+++...
T Consensus 81 ~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~f 120 (160)
T cd00904 81 WGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDF 120 (160)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 888754 778888999999999999999999999998764
No 4
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=210.72 Aligned_cols=118 Identities=27% Similarity=0.446 Sum_probs=111.6
Q ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC
Q 028202 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~ 169 (212)
+.++++.++||+|||.||+|||+|++||+||+ ..||+|+|+||+.||+||+.||+||++|+++||++|.++.|++|+.
T Consensus 1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~ 78 (167)
T COG1528 1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN 78 (167)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence 35789999999999999999999999999999 5699999999999999999999999999999999999999999999
Q ss_pred cCccccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 170 EFDHAEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 170 e~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+|+++.. +...+.+|+.++..|+++...|.++|||.|.-.
T Consensus 79 ~~~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nF 119 (167)
T COG1528 79 KFSSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNF 119 (167)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 9999865 888899999999999999999999999998643
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=99.96 E-value=3.1e-29 Score=205.35 Aligned_cols=119 Identities=43% Similarity=0.657 Sum_probs=110.5
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCC-Cc
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE 170 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~-~e 170 (212)
+++|+++||+|||.|++|+|+|++||.||++.++|++|||+||+.+|+|||+||++|++||++|||+|++++|++|. ..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 46899999999999999999999999999966569999999999999999999999999999999999999999998 77
Q ss_pred Cccccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 171 FDHAEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 171 ~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
|.++.. +.....+|+.++..|++++..|.+.+|+++..++
T Consensus 81 ~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl 121 (161)
T cd01056 81 WGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFL 121 (161)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHH
Confidence 877754 7888999999999999999999999999997653
No 6
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.5e-28 Score=204.40 Aligned_cols=122 Identities=48% Similarity=0.708 Sum_probs=108.2
Q ss_pred CccchhcccccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 028202 82 PLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (212)
Q Consensus 82 ~~~s~~Rq~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l 161 (212)
.+.+++||+++++++.+||.|||.|+++||+|++|++||+|++++|+||++||.++|+||||||++||+|+|+|||+|.+
T Consensus 4 ~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l 83 (178)
T KOG2332|consen 4 KMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIEL 83 (178)
T ss_pred cchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCcccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcCccccccccHHHHHHHHHH--HHH----HHHHHHHhcCChhhh
Q 028202 162 HSIMQPPSEFDHAEKGDALYGKFSGLTA--ALN----HLIYSISRLKSYNVI 207 (212)
Q Consensus 162 ~~I~~P~~e~~~~e~~d~l~a~E~aLt~--~In----e~i~~~~~~kD~~~~ 207 (212)
++|.+|.. .+|++.+.+||.++.. .+| ++-..+.+.+|.+..
T Consensus 84 ~~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~ 131 (178)
T KOG2332|consen 84 QDIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLC 131 (178)
T ss_pred cccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 99999954 5778889999999774 344 444456666787654
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.92 E-value=7.8e-25 Score=176.62 Aligned_cols=116 Identities=41% Similarity=0.620 Sum_probs=106.1
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcC
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~ 171 (212)
+++|+++||+||+.|+.|+++|++||.||++ +|++||++||+++|+||++||+++++|+++|||+|++++|++|+..|
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~ 78 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEF 78 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCccc
Confidence 4789999999999999999999999999995 59999999999999999999999999999999999999999998777
Q ss_pred cccc-ccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 172 DHAE-KGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 172 ~~~e-~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+++. .+.....+|..++..|++++..|.+.+|+++..+
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~ 117 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNF 117 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHH
Confidence 7664 3666778888888899999999999999998654
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.90 E-value=4.5e-23 Score=170.35 Aligned_cols=118 Identities=17% Similarity=0.062 Sum_probs=111.5
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCc
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e 170 (212)
.++++++.||++++.|+.|+++|+.||.+|+ +||+++++.+|+.+|.|||+||++|++||+++||.|+++++++|..+
T Consensus 3 ~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g 80 (158)
T PRK10635 3 GDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIG 80 (158)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 5789999999999999999999999999999 89999999999999999999999999999999999999999999988
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 171 FDHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 171 ~~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
.+..|++.....+|......|++++..|.+.+||+|..++
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll 120 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMM 120 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666778888999999999999999999999999997664
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.86 E-value=2.8e-21 Score=157.31 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=107.7
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcC
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~ 171 (212)
+++++++||+||+.|+.|+++|+.|+.||. +|+++|++.||++++.||++||.+|.+|++++||.|.++.+++|+...
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~~ 81 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIGE 81 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCCC
Confidence 679999999999999999999999999996 889999999999999999999999999999999999999999998875
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 172 DHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 172 ~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+..+.+......|..++..|++++..+.+.+|+.|..+
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~l 119 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDL 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44456888888999999999999999999999998765
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.79 E-value=1.2e-18 Score=139.56 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=104.7
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcC
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~ 171 (212)
++++++.||++|+.|+.++++|+.++.||+ +++++|+++||+.++.||++||++|.+|++.+||.|.+..+++|..+.
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~ 80 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGE 80 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCC
Confidence 678999999999999999999999999998 669999999999999999999999999999999999999888887765
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 172 DHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 172 ~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+..+.+......|..+...+++++..+.+.+|+.+..+
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~ 118 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDL 118 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 54455666777788888899999999999999998765
No 11
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.5e-18 Score=140.35 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=112.4
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCc
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e 170 (212)
..+++++.||+++..||.|.++|+.++..+. |||+..++++|+++|.+||.||++++++|++.+|.|+++.+.+...+
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG 80 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence 4589999999999999999999999999999 99999999999999999999999999999999999999999999988
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 171 FDHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 171 ~~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
-+.+|.+....++|......+.++|..|.+.+||++..+.
T Consensus 81 ~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~ 120 (157)
T COG2193 81 ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLL 120 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 8888888888999999999999999999999999998764
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.76 E-value=4.2e-18 Score=135.39 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=95.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcCccc
Q 028202 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (212)
Q Consensus 95 ve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~~~~ 174 (212)
..+.||+.+..|+.++++|+.|+.|++ ++|++|+|+||+.++.+|+.||.+|++|++++||.|. .|+..|++.
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~~~~~ 74 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIGIGDT 74 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCCcchH
Confidence 457899999999999999999999999 5699999999999999999999999999999999999 566666655
Q ss_pred -cccccHHHHHHH-HHHHHHHHHHHHHhcCChhhhhhh
Q 028202 175 -EKGDALYGKFSG-LTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 175 -e~~d~l~a~E~a-Lt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
+.+.....+|.. .+..|++++..|.+++|+++..++
T Consensus 75 ~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f 112 (134)
T cd01041 75 LENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSF 112 (134)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346667778875 668999999999999999987654
No 13
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.71 E-value=4.7e-17 Score=126.04 Aligned_cols=112 Identities=29% Similarity=0.391 Sum_probs=95.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----CCCCCCc
Q 028202 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE 170 (212)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~-----I~~P~~e 170 (212)
+++||++++.|+.++++|+.++.+|+ +.+++|+++||+++++||++|++++.+|++.|||.|.... ++.|+.
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 57899999999999999999999999 6799999999999999999999999999999999655544 566655
Q ss_pred Cccc-cccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 171 FDHA-EKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 171 ~~~~-e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
|.++ +.+......|..+...+++++..|.+.+|+.+.-++
T Consensus 78 ~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~ 118 (142)
T PF00210_consen 78 WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFL 118 (142)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4444 336666777777778999999999999999987553
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.66 E-value=1.1e-15 Score=121.64 Aligned_cols=116 Identities=19% Similarity=0.084 Sum_probs=97.3
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccC-------
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI------- 164 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I------- 164 (212)
.+++++.||++++.|+.++++|+.++.++. ++++.++++||++++.||++||+++.+|++.+||+|.....
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 357899999999999999999999999999 66899999999999999999999999999999999998553
Q ss_pred ---CCCCCcCcc-ccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 165 ---MQPPSEFDH-AEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 165 ---~~P~~e~~~-~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
+.|...+.+ .+.+......|..+...+++++..+.+ +|+.|..++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll 130 (148)
T cd01052 82 CKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLA 130 (148)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHH
Confidence 333333323 344677777888888899999998865 999887653
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.58 E-value=1.5e-14 Score=114.36 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=85.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcCccc
Q 028202 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (212)
Q Consensus 95 ve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~~~~ 174 (212)
+++.||.|++.|++++++|+.|+.|++ ..|++|+|+||+.++.+|+.||+++.+++ |+ |+ -+..
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~-----~~~~ 65 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS-----EDTK 65 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc-----ccHH
Confidence 678999999999999999999999999 55999999999999999999999999976 22 21 1223
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 175 EKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 175 e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
+.+.....+|...+..|++++..|+++||+.+..+.
T Consensus 66 ~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~ 101 (123)
T cd01046 66 ENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFF 101 (123)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHH
Confidence 446677888888888999999999999999987653
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.02 E-value=3.9e-09 Score=89.86 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=88.4
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCC--C-CC
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP 168 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~--~-P~ 168 (212)
.+++++.||+.+..|+.+.|+|..+++... .+--++++.||.+...||+.||+.+.++|.+.||.|.+.+-+ . -.
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 368999999999999999999999999999 666789999999999999999999999999999999886652 0 00
Q ss_pred CcC-ccccc-cccHHHHHHHHH------HHHHHHHHHHHhcCChhhhhh
Q 028202 169 SEF-DHAEK-GDALYGKFSGLT------AALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 169 ~e~-~~~e~-~d~l~a~E~aLt------~~Ine~i~~~~~~kD~~~~~~ 209 (212)
..+ .-++. .+....+|..|. ..|+++++.+. .+|.+|--+
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l 143 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDL 143 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHH
Confidence 000 00111 133444555554 57899999998 678887544
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=98.86 E-value=1.7e-08 Score=80.17 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=93.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc--------CCCCC-
Q 028202 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPP- 168 (212)
Q Consensus 98 aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~--------I~~P~- 168 (212)
.||..+..++..+..|....-+-. ++++..+..+|.+.++++++|+..+.+++...||.|.... ++.++
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 588888999988888887776666 7799999999999999999999999999999999999874 66665
Q ss_pred CcCccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 028202 169 SEFDHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 169 ~e~~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~~ 210 (212)
..++..+........+..+...+++++..|.+.+|++|..+.
T Consensus 80 ~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll 121 (139)
T cd01043 80 GVLSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLL 121 (139)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555556666777777778999999999999999987653
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.42 E-value=3.4e-06 Score=61.57 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=56.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc
Q 028202 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS 163 (212)
Q Consensus 98 aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~ 163 (212)
+||..+..|+.+.+.|..++..++ .+++..+|...+.+|+.|++.|.+++..+|+.+....
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~ 62 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPP 62 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH
Confidence 689999999999999999999876 6889999999999999999999999999999987553
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=98.31 E-value=1.1e-05 Score=65.19 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhhh---hhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 028202 91 YEDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (212)
Q Consensus 91 ~s~eve~aLNeQIn---~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~ 162 (212)
-+++.-..|++|+. .|+.+..+|+..+.-.. . +.+.+++.|...+.+|++|++.|.+++..+||.+.+.
T Consensus 10 ~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~ 81 (154)
T cd07908 10 PNPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR 81 (154)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 45677888899888 99999999999998776 3 6899999999999999999999999999999988754
No 20
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=97.71 E-value=0.0006 Score=56.64 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=81.4
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--------cc
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HS 163 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l--------~~ 163 (212)
.+++.+.||..+..++.....|..+.-+-. ...+..+..+|.+++.++++|+..+-+++...||.|.- ..
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence 356889999999999998888887776555 45888999999999999999999999999999998753 34
Q ss_pred CCC-CCCcCccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 164 IMQ-PPSEFDHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 164 I~~-P~~e~~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
|+. |...++..+....+..--..+...+++.+ .+++|+.|.-+
T Consensus 98 i~e~~~~~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dl 141 (162)
T PRK09448 98 LKSYPLDIHNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADI 141 (162)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHH
Confidence 544 44433333222222222223334556666 77889988654
No 21
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.47 E-value=0.0019 Score=49.29 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=56.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 028202 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (212)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l 161 (212)
+.|+..|..|..+...|..++.-+..+ | |.+.+.|+..|.+|.+|+..|.+.+..+++....
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~ 62 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP 62 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 468889999999999999999999954 7 9999999999999999999999999999876544
No 22
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=97.31 E-value=0.0011 Score=50.59 Aligned_cols=55 Identities=29% Similarity=0.317 Sum_probs=50.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028202 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RG 156 (212)
+.||..|..|..+...|...+..++. +++..+|...+.+|+.|++.|.+.+..+|
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999998772 38999999999999999999999999987
No 23
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.86 E-value=0.026 Score=46.73 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=51.8
Q ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 028202 93 DECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (212)
Q Consensus 93 ~eve~aLNeQI---n~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~ 158 (212)
+..-..|.+|+ +-|+.+..+|+..+.-++ ..+.+...|...+.||+.|++.|-+.+...||.
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~ 83 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKD 83 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444444 469999999999999884 358999999999999999999999999999983
No 24
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.45 E-value=0.013 Score=46.00 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=52.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 028202 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (212)
Q Consensus 98 aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~ 160 (212)
.+|+.++.|..+..+|..++.... =+...+.|...|++|++|++-|-+++..+|+.+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~-----~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~ 59 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREK-----DPENREILLKLAEDERRHAEFWKKFLGKRGVPPP 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 478899999999999999999876 2458999999999999999999999999998774
No 25
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.088 Score=43.91 Aligned_cols=115 Identities=21% Similarity=0.198 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee--------eccC
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~--------l~~I 164 (212)
.++.+.||+++..=+.....++ -..| .=..-.+--+-.+|.++.+|-.+|..-+-++++..||.|. +..|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~-~~HW-nV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTH-NYHW-NVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccc-ceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 6788889987644322222211 1112 2123345567899999999999999999999999999875 4445
Q ss_pred CCCCCcCccccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 165 MQPPSEFDHAEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 165 ~~P~~e~~~~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+..+.+++..+....+..--..+...+++.+..+.+.+|.+|.-+
T Consensus 92 ke~~~~~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl 136 (156)
T COG0783 92 KEEPGDYTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADL 136 (156)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH
Confidence 555544444444444444444555688999999999999998754
No 26
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.48 E-value=0.11 Score=39.65 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~ 162 (212)
++++.||+.|.....+...|-..+--++ + +.+..+|.+.+.+...|+..|-.++...||.|.-.
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~--~---~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~ 64 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE--D---PELKSLFQEFAQERQQHAEELQAEIQELGGEPEES 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 4688999999999999999999998877 2 78889999999999999999999999999988543
No 27
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=95.32 E-value=0.069 Score=45.10 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RG 156 (212)
+.++-|-+...-|=.+...|+.||...++. |++.+|+.|+..+.+|..||..+.+.+.+.+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456667777788889999999999999976 9999999999999999999999999887755
No 28
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.19 Score=42.55 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V 159 (212)
-...++++|+..|..|..|...|..++..+++. -+.+.|..-+.+||+|..+|-+.+.++++..
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345789999999999999999999999999853 6889999999999999999999999998876
No 29
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=93.99 E-value=0.95 Score=38.05 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee-----eeccC---
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV-----KLHSI--- 164 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V-----~l~~I--- 164 (212)
+++++.|-..-..|+.+.|-|..+..-.. ...=.|.-.|....-.|-+.|++.+.+++.+.||.+ .|..|
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 46677777777889999999998887665 223345667777777788999999999999999974 23333
Q ss_pred CCCC--CcCcc-ccccccHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 028202 165 MQPP--SEFDH-AEKGDALYGKFSGLTAALNHLIYSISRLKSYNVILL 209 (212)
Q Consensus 165 ~~P~--~e~~~-~e~~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~~~ 209 (212)
+.|. .++.+ .++..++-.-|.--...++++. ++..-+|+.|-+|
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic-~~T~GkDprTyeL 140 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEIC-NLTAGKDPRTYEL 140 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH-ccccCCCcchHHH
Confidence 2222 12222 2233333333333333444433 3345568877665
No 30
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=93.20 E-value=0.48 Score=39.84 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCC---CcC--------cc
Q 028202 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP---SEF--------DH 173 (212)
Q Consensus 105 ~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~---~e~--------~~ 173 (212)
-|+.|..+|....+.+. .+.+..++++...+|.+|-..|=+.+..+|++|.+-. |. ..| -.
T Consensus 11 GE~gA~~IY~gQ~~~~~-----~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~---PlW~~~gf~lG~~tal~G 82 (165)
T cd01042 11 GEVGAVRIYRGQLAVAR-----DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLL---PLWYVAGFALGALTALLG 82 (165)
T ss_pred chHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHhhC
Confidence 58899999999998876 3899999999999999999999999999999987643 10 000 01
Q ss_pred ccc-cccHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 028202 174 AEK-GDALYGKFSGLTAALNHLIYSISRLKSYNVI 207 (212)
Q Consensus 174 ~e~-~d~l~a~E~aLt~~Ine~i~~~~~~kD~~~~ 207 (212)
+++ .-...+.|..+...|++-+..+...+|-.+.
T Consensus 83 ~~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~ 117 (165)
T cd01042 83 KKAAMACTAAVETVVEEHYNDQLRELPAQPDKELR 117 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 122 3446778888888898888888765565443
No 31
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=92.06 E-value=0.59 Score=37.77 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 028202 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (212)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l 161 (212)
++.||+.|...+.+..-|-..+...+ -+.+..+|.+.+.+-..|+..|-.++...||.|.-
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~ 62 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPED 62 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 57899999999999999999887654 47889999999999999999999999999998753
No 32
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=89.56 E-value=3.7 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhhhhH-HHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 93 ~eve~aLNeQIn~El~-ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
..+...|..-+..|.. +.-.|..++..+... +....+.||..-..+|.+|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e--~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEE--GFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677888889999986 779999999999955 99999999999999999999998776643
No 33
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=87.46 E-value=2.7 Score=32.92 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln 153 (212)
+.+.+.|..-+..|...+-.|..+...+... |....+.||+.....|.+|+.++-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e--gd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKAE--GLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888889999999999999999999955 9999999999999999999999877654
No 34
>PF13668 Ferritin_2: Ferritin-like domain
Probab=87.03 E-value=11 Score=29.35 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcC-
Q 028202 96 EAAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF- 171 (212)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsMAayFdrd---nvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~- 171 (212)
.+.||-.++.|+.....|..-..-+..+ ..-=+..-.+|+.-...|+.|...|-+.+. |+.+. +.|..+|
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3678999999999999999877643210 112345678888889999999999998887 66653 3333333
Q ss_pred ----cccc-ccccHHHHHHHHHHHHHHHHH
Q 028202 172 ----DHAE-KGDALYGKFSGLTAALNHLIY 196 (212)
Q Consensus 172 ----~~~e-~~d~l~a~E~aLt~~Ine~i~ 196 (212)
+++. .......+|......++..+.
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~ 106 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAP 106 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 234445555555555554444
No 35
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=85.47 E-value=3.9 Score=35.87 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc
Q 028202 99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS 163 (212)
Q Consensus 99 LNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~ 163 (212)
|...|.+|+...-.||..+.--+.. .-...+.-.+.-+.|||-|....-+-++-.||.|.+.+
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~~--~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~~ 63 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKPG--TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLTS 63 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS-T--TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 4567899999999999665544422 22338889999999999999999999999999998873
No 36
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=84.43 E-value=3.4 Score=34.92 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC-----------cCc
Q 028202 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-----------EFD 172 (212)
Q Consensus 104 n~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~-----------e~~ 172 (212)
.-|+-|..+|..-...+.. .+....++++..++|.+|-..|-+.+..+|.+|.+- .|.- ..-
T Consensus 12 AGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l---~Plw~~~g~~LG~~tal~ 84 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLL---NPLWYVAGFALGALTALL 84 (172)
T ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHH---HHHHHHHHHHHHHHHHhh
Confidence 5689999999998888773 789999999999999999999999999999987553 2210 000
Q ss_pred cccc-cccHHHHHHHHHHHHHHHHHHHHh---cCChhhh
Q 028202 173 HAEK-GDALYGKFSGLTAALNHLIYSISR---LKSYNVI 207 (212)
Q Consensus 173 ~~e~-~d~l~a~E~aLt~~Ine~i~~~~~---~kD~~~~ 207 (212)
-.++ .....+.|..+...|++-|..+.. ..|-.+.
T Consensus 85 G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~ 123 (172)
T PF03232_consen 85 GDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELR 123 (172)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 0111 344678888888899999999985 4454443
No 37
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=83.85 E-value=8.6 Score=33.01 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCC
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P 167 (212)
.....|-++-+-|.-|+..=++|=.-+. ..+++..-+-.-+.||++|-++.++.|.+||. .++++.++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~ 85 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKD 85 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Confidence 5667788899999999988665533333 35888889999999999999999999999995 55555555
No 38
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=82.67 E-value=7.9 Score=29.07 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFME 150 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLie 150 (212)
....+|.-.+..|-.+.-.|..++..+. -+...++|...+.+|.+|...|-+
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998765 477889999999999999998864
No 39
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=80.37 E-value=8.9 Score=33.39 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=73.4
Q ss_pred CCCCccchhcccccHHHHHHHHHhh----hhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 79 PVSPLLSLARQKYEDECEAAINEQI----NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 79 ~~~~~~s~~Rq~~s~eve~aLNeQI----n~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
|..|.....|..+++.=-..+...| .-|+-|-++|..-+++....+ +.. -.++..+||-.|--.|-+++++
T Consensus 22 ~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~~---~R~--~l~em~d~E~~HL~~f~~~l~e 96 (204)
T COG2941 22 PTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSPE---PRI--QLKEMADEEIDHLAWFEQRLLE 96 (204)
T ss_pred CCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCcc---hHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556665444444333 359999999999998887542 222 7899999999999999999999
Q ss_pred cCCeeeeccC---------CCCCCcCccccc-cccHHHHHHHHHHHHHHHHHHHHh
Q 028202 155 RGGKVKLHSI---------MQPPSEFDHAEK-GDALYGKFSGLTAALNHLIYSISR 200 (212)
Q Consensus 155 RGG~V~l~~I---------~~P~~e~~~~e~-~d~l~a~E~aLt~~Ine~i~~~~~ 200 (212)
++.+|.+-.- .+-. ..-.+.+ .-...+.|..+...|++-++.+..
T Consensus 97 ~~vRPsll~P~W~~~~FalGA~a-~Llgdk~am~~teavE~vIe~Hy~~ql~~L~~ 151 (204)
T COG2941 97 LGVRPSLLNPLWYAAAFALGAGA-GLLGDKAAMGFTEAVETVIEKHYDGQLRELPN 151 (204)
T ss_pred ccCCccHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999876420 0000 0000111 233566777777777666666543
No 40
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=79.98 E-value=11 Score=29.86 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
.+.+.|..-++.|..+...|..+...+.+. +-+..+.||..--++|.+|..++-+++..
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~~--~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALEE--KDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999954 78999999998888999999888877763
No 41
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=79.03 E-value=8.2 Score=30.89 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLiey 151 (212)
.....+.|...+..|-.+...|..++...+ =+..-+.|..-+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777999999999999999999998654 3778889999999999999988654
No 42
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=78.63 E-value=20 Score=32.04 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccch-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcC
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALR-GLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~-GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~ 171 (212)
..-...|-.--+.||+|....+-...=|.+ ++| .|-.=|-+.+.||-.|...+.+++...|. .+++++.-..=|
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~---~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw 139 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP---NLPREFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLW 139 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHH
Confidence 345667777778999999999988888822 344 45444567889999999999999999994 667777665544
Q ss_pred ccccccccHHHHHHHHHH---------HHHHHHHHHHhcCChhhhhhh
Q 028202 172 DHAEKGDALYGKFSGLTA---------ALNHLIYSISRLKSYNVILLV 210 (212)
Q Consensus 172 ~~~e~~d~l~a~E~aLt~---------~Ine~i~~~~~~kD~~~~~~~ 210 (212)
+..+.......--.++.. .--..+..+.+.||..+..++
T Consensus 140 ~~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL 187 (253)
T PF04305_consen 140 EAAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAIL 187 (253)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHH
Confidence 433221100111112221 113467778888888776553
No 43
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=77.98 E-value=19 Score=28.25 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyl 152 (212)
..+.+.|...+..|-.+.-.|..+...++. .+-+..+.||..-..+|.+|...|-+.+
T Consensus 80 ~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 80 EDVPEMLENDLALEYEAIAALNEAIALCEE--VGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999988884 3788999999999999999998776554
No 44
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=77.60 E-value=12 Score=28.00 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLiey 151 (212)
......++|...|..|-.+.-.|..++.-+. =+.....|..-..+|+.|...|-+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~-----d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAE-----DPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678999999999999999999997665 2378889999999999999988653
No 45
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=75.66 E-value=17 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLiey 151 (212)
...+.|-..+..|-.+...|..+...+. -+...++|.....+|..|...+.++
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777779999999999999998876 4668999999999999999988765
No 46
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.92 E-value=14 Score=38.91 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln 153 (212)
....+.|.-.|++|-..--.|..++.-.. -+.+.++|...|++|++|.+.|.+...
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999998654 578999999999999999999988764
No 47
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=66.31 E-value=39 Score=28.53 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=53.9
Q ss_pred cccccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028202 88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 88 Rq~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~R 155 (212)
....+....++|-..|..|-.++..|.-+...-. =.+..+.|+..++.|+.|+..+..+++..
T Consensus 107 ~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 107 EMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELV-----NEEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999999999999999999988766 35677889999999999999998877654
No 48
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=64.22 E-value=45 Score=23.02 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028202 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (212)
Q Consensus 98 aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG 157 (212)
.+++-++.+=.++..|.....-+. =|.+=..|.....++.++...+++|++.+|=
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356677777788888888777666 4778899999999999999999999999984
No 49
>PRK10635 bacterioferritin; Provisional
Probab=59.04 E-value=56 Score=26.93 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyl 152 (212)
..+.+.+.|..-+..|..+.-.|-.+..+|... +=..-..+|..--.+|-+|...|=.-+
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~--~D~~s~~ll~~iL~dEe~H~~~le~~l 138 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADSV--HDYVSRDMMIEILADEEGHIDWLETEL 138 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999953 677888888888889999998776543
No 50
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=57.29 E-value=77 Score=23.73 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
.+.+.|...++.|-.....|..+...++. .+=+..+.|+...-.++-+|...|-+++..
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~--~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEK--EGDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999984 367899999999999999999888887764
No 51
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=56.19 E-value=1e+02 Score=24.49 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 028202 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (212)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~ 158 (212)
++|.-.+..|..+--.|..++--+. .-+-|..-+.+|.+|...+.+.+...|..
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~ 56 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLP 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5678889999999999999998763 34567778999999999998888776644
No 52
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=55.62 E-value=41 Score=35.59 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028202 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 95 ve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~R 155 (212)
..++|.-.|..|-.+...|.-|+..-++. ...-++|.+.++||++|-..|-+.+...
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999886621 2356899999999999999998877653
No 53
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=53.42 E-value=1.2e+02 Score=24.35 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln 153 (212)
..+.+.|..-+..|-.++..|..+...+.. .+=.+...||..-..+|.+|+..|=.++.
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~--~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIAYAEE--VRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999988874 47889999999999999999998877664
No 54
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=51.57 E-value=66 Score=29.43 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhh---hhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 028202 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (212)
Q Consensus 92 s~eve~aLNeQI---n~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~ 160 (212)
++...++|.+|+ .-|+.++.+|+.-+.-|. + +++-..+..-+-||..|.+.+-.-++.......
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~ 84 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGAT 84 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555666665 579999999999998777 3 778889999999999999998777666544433
No 55
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=48.96 E-value=1.4e+02 Score=24.37 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 028202 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~ 160 (212)
+-.+..|.+....|-.+.-.+-.|+.-.. . |.+..-|..+.+|.++|.++|-+-+...|..|.
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 44567888888899999988888887666 3 889999999999999999999999999999875
No 56
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=46.28 E-value=61 Score=29.68 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=43.9
Q ss_pred cHHHHHHHHHhh---hhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028202 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 92 s~eve~aLNeQI---n~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~R 155 (212)
++..-++|.+|+ .-|+.++.+|+..+.-|... . .+-..+..-+-||..|.|.+-.-++..
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~L 80 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQL 80 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 68999999999999988733 1 245889999999999999987755443
No 57
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=42.87 E-value=40 Score=24.03 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
-+.-+.+||++.+.=|.+||.+|-+-...
T Consensus 24 ~~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 24 LLEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987665
No 58
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=40.51 E-value=55 Score=27.84 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028202 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RG 156 (212)
-..||+.-.++=.+.-.+--|+..+. ..|++....|+.....-|.+|-+-|++||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 44567777777778888999999999 559999999999999999999999999998854
No 59
>PRK10304 ferritin; Provisional
Probab=40.48 E-value=1.8e+02 Score=24.05 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRD-NIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrd-nvgL~GfAkFFr~qS~EEreHAekLieyln~RG 156 (212)
.+.+.+..-+..|..++-.|..+...+... |-.-..|=.||-+.-.||-.|+..+++.+..-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999999999888863 223334445666666668889999998877665
No 60
>PRK13456 DNA protection protein DPS; Provisional
Probab=40.45 E-value=1.6e+02 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 94 eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
++.+.|.+-|..|--|.-.|..+--++.. .+-....-... -=.+|.+|+..|.+++..
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~--kDp~T~~l~~~-IL~dE~eH~~dl~~lL~~ 164 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAG--KDPRTYDLALA-ILQEEIEHEAWFSELLGG 164 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999983 34445444444 556788999999999863
No 61
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=39.58 E-value=1.3e+02 Score=23.17 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=37.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028202 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln 153 (212)
..++.-.+..|-.+...|..++.. -..+..-..||++|...|.+.+.
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777778999999999888766 22567899999999999987653
No 62
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=39.23 E-value=2.1e+02 Score=25.71 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHH-HHhhccCCc--cchhH------------------------------------HHH
Q 028202 93 DECEAAINEQINVEYNVSYVYHAL-YAYFDRDNI--ALRGL------------------------------------AKF 133 (212)
Q Consensus 93 ~eve~aLNeQIn~El~ASy~YlsM-AayFdrdnv--gL~Gf------------------------------------AkF 133 (212)
......|-++.|-|.-|+..=++| ..|....+- .|-.. ..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 456778899999999999887765 666532211 12222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCC
Q 028202 134 FKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 134 Fr~qS~EEreHAekLieyln~RGG~V~l~~I~~P 167 (212)
+-.-+.||+.|-++.++-|.+||.. ++.+.++
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RGi~--l~~~~~d 137 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRGIP--LGPDRKD 137 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCcC
Confidence 3456889999999999999999954 4555544
No 63
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=39.12 E-value=1.3e+02 Score=24.76 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028202 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 90 ~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~R 155 (212)
+.+.++.+-|...|..|-.|.-+|-.+....+ |-+...+-.| -...|..|.+.|-+.+.+.
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--Dp~v~~~l~~---I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMTD--DPGVKDTLSF---LLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 35667888999999999999999999999877 3344444444 5667999999999887654
No 64
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=35.63 E-value=59 Score=23.00 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~R 155 (212)
-+..+..||++.+.=|.++|..|-+.-..-
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~ 53 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKF 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998765543
No 65
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=32.55 E-value=91 Score=25.26 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~ 160 (212)
-+..++.||++.+.=|.++|.+|-+.-..-.+.+.
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~ 49 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPE 49 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 46789999999999999999999998777666543
No 66
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.50 E-value=4e+02 Score=24.22 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCC
Q 028202 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 91 ~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~ 169 (212)
-...-.+.|...-..||+|.+.=|-.+.-|. ++.+.=+-.|++ -+.||-.|-..+-+++...|.. .++.++-+.
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm~-VA~EE~~HF~Ll~~~L~~LG~~--YGDfpaHdg 145 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWMR-VADEEAKHFRLLRERLKSLGYD--YGDFPAHDG 145 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC--cCCCccccc
Confidence 3445677777788899999999998888888 667777777776 4789999999999999999954 455555443
No 67
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=30.29 E-value=2.9e+02 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCC
Q 028202 128 RGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (212)
Q Consensus 128 ~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~ 168 (212)
+-+..+|.+...++.+-.+++.+|+..+|--...+.++.|.
T Consensus 124 ~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~~ 164 (166)
T PF11553_consen 124 NDLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDPK 164 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT------B-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCC
Confidence 34899999999999999999999999999777666555553
No 68
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.48 E-value=97 Score=26.85 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~RG 156 (212)
-...|+.||++.+.=|.++|.+|-+.-..-+
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~~~ 50 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKSAG 50 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999998876543
No 69
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.27 E-value=2.4e+02 Score=30.07 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=77.2
Q ss_pred ccccch----HHhhhhhhc---CCCCCccchhcccccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHH
Q 028202 63 VVFQPF----EEVKKEVLD---VPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFK 135 (212)
Q Consensus 63 ~~~~p~----~e~~~~~~~---~~~~~~~s~~Rq~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr 135 (212)
.|||-. ||||.-+.. -|+.|-.|..|. -++--|.+-+-..-..+|+++.++.|..-.++..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 627 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD----HLVYRLHESLYKHRREALVFMLLALWIAPEKISS-------- 627 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc--------
Confidence 466643 566654433 355555565554 4455555666666889999999999988764333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCCCcCccccccccHHHHHHHHH------HHHHHHHHHHHhcCChhhh
Q 028202 136 ESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYGKFSGLT------AALNHLIYSISRLKSYNVI 207 (212)
Q Consensus 136 ~qS~EEreHAekLieyln~RGG~V~l~~I~~P~~e~~~~e~~d~l~a~E~aLt------~~Ine~i~~~~~~kD~~~~ 207 (212)
.|-++|++.+..+-...-|..++..+..+-+ ..||.-|+ --+.++++.+-+.+||..+
T Consensus 628 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (932)
T PRK13184 628 -------REEEKFLEILYHKQQATLFCQLDKTPLQFRS-------SKMELFLSFWSGFTPFLPELFQRAWDLRDYRAL 691 (932)
T ss_pred -------hHHHHHHHHHHhhccCCceeeccCchhhhhh-------hhHHHHHHHHhcCchhhHHHHHHHhhcccHHHH
Confidence 3556777777777666666666666655533 34555555 3678888888888888554
No 70
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=25.47 E-value=1.5e+02 Score=25.82 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~RGG 157 (212)
-...|++||++.+.=|.+||.+|.+....-.+
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~ 51 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLARTTLD 51 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999986655443
No 71
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=24.89 E-value=2.5e+02 Score=21.82 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=57.6
Q ss_pred hhcccccHHHHHHHHHhhhhhhHHHHHHHHHHHh-hc---cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 028202 86 LARQKYEDECEAAINEQINVEYNVSYVYHALYAY-FD---RDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (212)
Q Consensus 86 ~~Rq~~s~eve~aLNeQIn~El~ASy~YlsMAay-Fd---rdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l 161 (212)
+++.....+....||.+.+.|....|.=..-..| |+ ..++.+.-|++||.-.-.=+.---..|-.|+-.+|+.-..
T Consensus 22 ~~~~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~ 101 (125)
T PF06744_consen 22 QAWKLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRW 101 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCccee
Confidence 3344466678889999998887655442222222 33 4579999999999988777777778888888888887766
Q ss_pred ccCCC
Q 028202 162 HSIMQ 166 (212)
Q Consensus 162 ~~I~~ 166 (212)
.....
T Consensus 102 ~~~~~ 106 (125)
T PF06744_consen 102 RPGDG 106 (125)
T ss_pred CCCCC
Confidence 66543
No 72
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.74 E-value=91 Score=26.81 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~RGG~ 158 (212)
-+..+..||++.|.=|.+||.+|-+.-..-.+.
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~~ 52 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLGG 52 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 467899999999999999999999877666543
No 73
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=24.67 E-value=3.3e+02 Score=20.97 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 028202 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFME 150 (212)
Q Consensus 92 s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLie 150 (212)
...+.+.|..-+..|-.+.-.|..+...++ + +=.+...++...-.+|.+|...|-+
T Consensus 91 ~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~--~-~D~~t~~ll~~~l~de~~h~~~~~~ 146 (148)
T cd01052 91 PPDVKGILKVNLKAERCAIKVYKELCDMTH--G-KDPVTYDLALAILNEEIEHEEDLEE 146 (148)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHc--C-CChHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678999999999999999998888775 3 5677888888888899999887754
No 74
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.66 E-value=4.9e+02 Score=23.01 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=49.5
Q ss_pred hHHhhhhhhcCCCCCccchhcccccHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHH
Q 028202 68 FEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEK 147 (212)
Q Consensus 68 ~~e~~~~~~~~~~~~~~s~~Rq~~s~eve~aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAek 147 (212)
.|+||...... |-.....++--.+|.||... +...=-||.. +-+.+.+++ -+.|-.|=+.-+.+
T Consensus 80 Le~Ik~~F~k~------------YG~~a~ta~AysmN~EFs~v--L~qqm~y~s~-~p~id~lsk-vkaqv~evk~vM~e 143 (217)
T KOG0859|consen 80 LERIKEDFKKR------------YGGGAHTAVAYSMNKEFSSV--LKQQMQYCSE-HPEISKLAK-VKAQVTEVKGVMME 143 (217)
T ss_pred HHHHHHHHHHH------------hccchhHHHHhHhHHHHHHH--HHHHHHHHHc-CcchhHHHH-HHHHHHHHHHHHHH
Confidence 38999777543 22223344555566666322 2333334543 234666665 46667788888889
Q ss_pred HHHHHHhcCCeeeec
Q 028202 148 FMEYQNLRGGKVKLH 162 (212)
Q Consensus 148 Lieyln~RGG~V~l~ 162 (212)
=|+-+++||.+.++-
T Consensus 144 NIekvldRGekiELL 158 (217)
T KOG0859|consen 144 NIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHhccCeEEee
Confidence 999999999998874
No 75
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.35 E-value=1.7e+02 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~ 154 (212)
-+||.|......++.|.+|-.++-+-.++
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988655443
No 76
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.86 E-value=1.7e+02 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=28.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028202 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 126 gL~GfAkFFr~qS~EEreHAekLieyln~RGG~V 159 (212)
-+.-+++||++.+.=|.+||..|.+....-.+..
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~ 53 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASNSS 53 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567999999999999999999999887765544
No 77
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=22.90 E-value=3.7e+02 Score=24.69 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHH-HhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 028202 90 KYEDECEAAINEQINVEYNVSYVYHALY-AYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (212)
Q Consensus 90 ~~s~eve~aLNeQIn~El~ASy~YlsMA-ayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~ 162 (212)
.+++....+|---.=.| ...=.|+.+- .+|..++-.-+++++|...-..||-.|+.-|-+|+.-- |.+...
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~ 126 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPR 126 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHH
Confidence 47777777776666666 4455666443 34443222337899999999999999999999999885 444333
No 78
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=21.26 E-value=4.9e+02 Score=22.56 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=45.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccCCCCC
Q 028202 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (212)
Q Consensus 98 aLNeQIn~El~ASy~YlsMAayFdrdnvgL~GfAkFFr~qS~EEreHAekLieyln~RGG~V~l~~I~~P~ 168 (212)
.|-++..-|+.|..+=+.+-.-+. +-..+-.-+-.-+.||.+|-+...+.+..||-.+ -+|++|+
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~----~~~~lv~km~~larEEL~HFeqV~eilq~RnI~~--~~i~asr 96 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYP----SNTDLVDKMVLLAREELHHFEQVLEILQARNIPY--VPIPASR 96 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccCCccH
Confidence 345677888988887553332222 2245556677778899999999999999999543 4566654
Done!