Query 028203
Match_columns 212
No_of_seqs 112 out of 481
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 2.4E-56 5.1E-61 364.8 26.7 201 1-212 1-219 (220)
2 PRK03963 V-type ATP synthase s 100.0 8.7E-31 1.9E-35 217.6 25.9 175 10-208 4-198 (198)
3 PRK02292 V-type ATP synthase s 100.0 2.2E-28 4.8E-33 201.9 24.5 170 10-209 3-188 (188)
4 PF01991 vATP-synt_E: ATP synt 100.0 1.7E-29 3.7E-34 208.4 15.2 180 16-207 1-198 (198)
5 PRK01194 V-type ATP synthase s 100.0 1.4E-27 3.1E-32 197.1 21.7 158 10-209 3-182 (185)
6 COG1390 NtpE Archaeal/vacuolar 100.0 1.2E-26 2.6E-31 192.7 24.3 175 9-209 3-194 (194)
7 PRK01558 V-type ATP synthase s 99.9 1.6E-22 3.4E-27 168.8 25.1 180 3-206 2-195 (198)
8 PRK01005 V-type ATP synthase s 99.9 5.5E-19 1.2E-23 148.2 23.6 176 4-209 8-207 (207)
9 PRK09098 type III secretion sy 99.4 4.7E-10 1E-14 95.9 23.0 169 7-202 34-223 (233)
10 TIGR03825 FliH_bacil flagellar 99.3 1.2E-09 2.6E-14 94.5 23.7 75 109-203 175-249 (255)
11 PRK06937 type III secretion sy 99.2 2.5E-09 5.4E-14 89.6 20.1 157 14-201 32-202 (204)
12 PRK06669 fliH flagellar assemb 99.2 2.6E-08 5.6E-13 87.2 23.1 72 109-200 205-276 (281)
13 PRK06328 type III secretion sy 99.1 2.6E-08 5.6E-13 84.7 21.3 158 14-203 31-205 (223)
14 TIGR02499 HrpE_YscL_not type I 98.9 3.4E-07 7.3E-12 73.5 19.9 137 13-183 14-165 (166)
15 COG1317 FliH Flagellar biosynt 98.8 3E-06 6.6E-11 72.6 23.1 171 4-202 40-228 (234)
16 TIGR03321 alt_F1F0_F0_B altern 98.8 3.4E-06 7.3E-11 72.6 22.9 164 13-198 61-245 (246)
17 PF06188 HrpE: HrpE/YscL/FliH 98.7 4.6E-06 1E-10 69.4 19.6 138 13-185 31-183 (191)
18 PRK13386 fliH flagellar assemb 98.3 6.3E-05 1.4E-09 64.5 17.5 70 109-208 162-231 (236)
19 PF02108 FliH: Flagellar assem 98.3 7.9E-05 1.7E-09 56.9 15.1 61 109-193 67-127 (128)
20 PRK05687 fliH flagellar assemb 98.2 0.00019 4.2E-09 61.6 17.3 68 109-200 175-242 (246)
21 PRK06032 fliH flagellar assemb 97.8 0.012 2.6E-07 49.1 21.1 69 109-197 127-195 (199)
22 PRK14474 F0F1 ATP synthase sub 97.8 0.014 3.1E-07 50.5 21.4 52 14-65 62-113 (250)
23 PRK13428 F0F1 ATP synthase sub 97.7 0.021 4.6E-07 53.3 22.3 32 165-198 412-443 (445)
24 PRK08475 F0F1 ATP synthase sub 97.6 0.0022 4.7E-08 52.2 13.1 76 9-95 74-149 (167)
25 PF06635 NolV: Nodulation prot 97.5 0.032 6.9E-07 46.9 18.8 153 15-200 33-200 (207)
26 PRK01194 V-type ATP synthase s 97.2 0.016 3.4E-07 48.0 13.9 60 5-64 9-68 (185)
27 PRK02292 V-type ATP synthase s 96.9 0.066 1.4E-06 43.9 14.4 45 5-49 9-53 (188)
28 PRK03963 V-type ATP synthase s 96.7 0.094 2E-06 43.3 14.5 35 23-61 6-40 (198)
29 PRK13436 F0F1 ATP synthase sub 96.5 0.016 3.4E-07 47.6 8.3 32 166-199 147-178 (179)
30 PRK01558 V-type ATP synthase s 96.4 0.17 3.7E-06 42.2 13.9 39 9-58 4-42 (198)
31 COG2811 NtpF Archaeal/vacuolar 96.4 0.27 5.8E-06 37.3 13.4 55 9-63 25-79 (108)
32 PRK01005 V-type ATP synthase s 96.3 0.16 3.5E-06 42.8 13.4 42 1-53 1-42 (207)
33 PRK15354 type III secretion sy 96.3 0.6 1.3E-05 39.4 17.1 140 14-194 43-208 (224)
34 PF01991 vATP-synt_E: ATP synt 96.0 0.53 1.1E-05 38.3 14.6 29 178-206 160-193 (198)
35 PRK13434 F0F1 ATP synthase sub 95.8 0.023 4.9E-07 46.7 5.6 32 166-199 143-174 (184)
36 TIGR02926 AhaH ATP synthase ar 95.6 0.53 1.1E-05 33.8 12.1 26 12-37 9-34 (85)
37 PRK08404 V-type ATP synthase s 95.6 0.69 1.5E-05 34.7 15.0 53 11-63 12-64 (103)
38 PRK09173 F0F1 ATP synthase sub 95.6 0.73 1.6E-05 36.7 13.6 94 15-130 60-153 (159)
39 PRK09173 F0F1 ATP synthase sub 95.5 0.8 1.7E-05 36.5 13.6 88 9-100 65-158 (159)
40 PRK07352 F0F1 ATP synthase sub 95.4 0.89 1.9E-05 36.9 13.8 46 13-58 75-120 (174)
41 CHL00019 atpF ATP synthase CF0 95.4 0.87 1.9E-05 37.3 13.8 47 13-59 80-126 (184)
42 PRK13430 F0F1 ATP synthase sub 95.3 0.054 1.2E-06 47.4 6.8 31 166-198 239-269 (271)
43 PRK08404 V-type ATP synthase s 95.2 0.83 1.8E-05 34.2 12.1 69 20-96 10-78 (103)
44 TIGR02926 AhaH ATP synthase ar 95.2 0.44 9.6E-06 34.2 10.2 39 20-62 6-44 (85)
45 COG2811 NtpF Archaeal/vacuolar 95.2 0.99 2.1E-05 34.3 15.2 59 1-63 3-64 (108)
46 PRK14475 F0F1 ATP synthase sub 95.2 1.2 2.6E-05 36.0 13.7 23 15-37 68-90 (167)
47 PRK06231 F0F1 ATP synthase sub 95.1 1.3 2.8E-05 37.2 14.1 44 12-55 103-146 (205)
48 COG1390 NtpE Archaeal/vacuolar 95.0 1.4 3.1E-05 36.7 14.1 109 20-136 3-118 (194)
49 PRK00106 hypothetical protein; 95.0 3.7 7.9E-05 39.5 18.5 33 14-46 44-76 (535)
50 PRK13453 F0F1 ATP synthase sub 94.8 1.7 3.7E-05 35.3 13.7 40 14-53 75-114 (173)
51 PRK13461 F0F1 ATP synthase sub 94.7 1.7 3.7E-05 34.6 13.8 45 13-57 61-105 (159)
52 PRK13460 F0F1 ATP synthase sub 94.7 1.9 4.1E-05 34.9 13.8 42 13-54 72-113 (173)
53 PRK13460 F0F1 ATP synthase sub 94.7 1.8 4E-05 35.0 13.6 96 23-130 71-167 (173)
54 PRK14471 F0F1 ATP synthase sub 94.7 1.8 4E-05 34.6 13.7 33 13-45 64-96 (164)
55 PRK14475 F0F1 ATP synthase sub 94.4 2.2 4.7E-05 34.4 13.8 95 25-130 67-161 (167)
56 PRK06568 F0F1 ATP synthase sub 94.4 2.2 4.7E-05 34.4 13.7 48 10-61 57-104 (154)
57 PRK14473 F0F1 ATP synthase sub 94.3 2.2 4.8E-05 34.1 13.6 47 11-57 62-108 (164)
58 CHL00118 atpG ATP synthase CF0 94.2 1.2 2.7E-05 35.5 11.5 52 11-62 76-127 (156)
59 PRK14472 F0F1 ATP synthase sub 94.2 2.5 5.4E-05 34.3 13.8 39 14-52 75-113 (175)
60 PRK13455 F0F1 ATP synthase sub 94.2 2.6 5.6E-05 34.5 13.6 55 74-132 125-180 (184)
61 PRK09174 F0F1 ATP synthase sub 94.1 2.3 5E-05 35.7 13.4 32 13-44 109-140 (204)
62 PRK13454 F0F1 ATP synthase sub 94.1 2.6 5.7E-05 34.5 13.4 37 11-47 85-121 (181)
63 PRK07353 F0F1 ATP synthase sub 93.9 1.7 3.7E-05 33.7 11.5 45 13-57 61-105 (140)
64 PRK14473 F0F1 ATP synthase sub 93.9 2.7 5.9E-05 33.6 14.2 97 22-129 62-158 (164)
65 PRK14472 F0F1 ATP synthase sub 93.9 2.9 6.4E-05 33.9 13.9 96 24-131 74-170 (175)
66 TIGR03825 FliH_bacil flagellar 93.8 2.7 6E-05 36.2 13.8 38 169-206 204-248 (255)
67 PRK13461 F0F1 ATP synthase sub 93.8 2.8 6E-05 33.4 13.5 76 25-108 62-137 (159)
68 COG0712 AtpH F0F1-type ATP syn 93.6 0.25 5.4E-06 40.7 6.6 31 166-198 147-177 (178)
69 PRK08475 F0F1 ATP synthase sub 93.6 2.4 5.3E-05 34.3 12.2 73 21-101 75-147 (167)
70 PRK05759 F0F1 ATP synthase sub 93.5 3 6.6E-05 32.8 14.1 47 11-57 58-104 (156)
71 TIGR03321 alt_F1F0_F0_B altern 93.4 3.8 8.2E-05 35.1 13.9 96 25-131 62-157 (246)
72 PF03179 V-ATPase_G: Vacuolar 93.3 1.9 4.1E-05 32.0 10.4 49 10-62 12-60 (105)
73 TIGR03319 YmdA_YtgF conserved 93.2 8 0.00017 37.0 19.3 29 15-43 24-52 (514)
74 PRK06231 F0F1 ATP synthase sub 93.1 4 8.6E-05 34.2 13.2 95 24-129 104-198 (205)
75 PRK14471 F0F1 ATP synthase sub 93.1 3.8 8.2E-05 32.8 13.4 94 25-129 65-159 (164)
76 PRK14474 F0F1 ATP synthase sub 93.1 4.6 0.0001 34.9 13.8 161 7-198 70-245 (250)
77 PF03179 V-ATPase_G: Vacuolar 93.0 2.8 6E-05 31.1 13.0 42 18-63 9-50 (105)
78 PRK13441 F0F1 ATP synthase sub 93.0 0.31 6.8E-06 39.8 6.2 32 166-199 146-177 (180)
79 COG0711 AtpF F0F1-type ATP syn 92.9 4.2 9.1E-05 32.7 14.4 46 12-61 61-106 (161)
80 TIGR01144 ATP_synt_b ATP synth 92.6 4.1 8.8E-05 31.8 14.2 39 12-50 50-88 (147)
81 PF00430 ATP-synt_B: ATP synth 92.5 1.8 4E-05 32.8 9.6 46 12-57 54-99 (132)
82 PRK08476 F0F1 ATP synthase sub 92.5 4.3 9.3E-05 31.9 13.4 54 10-63 60-113 (141)
83 PRK13453 F0F1 ATP synthase sub 92.5 5 0.00011 32.6 14.1 94 25-129 75-168 (173)
84 PRK13455 F0F1 ATP synthase sub 92.5 5.1 0.00011 32.7 14.1 41 15-55 85-125 (184)
85 CHL00019 atpF ATP synthase CF0 92.1 5.7 0.00012 32.5 13.5 95 25-130 81-175 (184)
86 PRK07352 F0F1 ATP synthase sub 92.1 5.5 0.00012 32.2 13.5 74 25-106 76-149 (174)
87 PF06188 HrpE: HrpE/YscL/FliH 91.6 6.6 0.00014 32.5 12.6 82 21-110 28-109 (191)
88 PRK15322 invasion protein OrgB 91.5 7.7 0.00017 32.7 19.1 45 12-63 12-56 (210)
89 PF00213 OSCP: ATP synthase de 91.4 0.054 1.2E-06 43.6 -0.2 80 114-197 75-171 (172)
90 PRK06568 F0F1 ATP synthase sub 91.1 2.9 6.4E-05 33.6 9.6 65 25-97 61-125 (154)
91 PRK07353 F0F1 ATP synthase sub 90.9 6.2 0.00013 30.5 11.9 68 23-98 60-127 (140)
92 PRK13454 F0F1 ATP synthase sub 90.6 7.6 0.00016 31.8 11.9 77 22-107 85-162 (181)
93 TIGR03319 YmdA_YtgF conserved 90.6 12 0.00025 35.9 14.7 34 8-41 32-65 (514)
94 PRK12704 phosphodiesterase; Pr 90.5 17 0.00036 34.9 19.2 22 16-37 31-52 (520)
95 PRK09174 F0F1 ATP synthase sub 90.4 7.7 0.00017 32.5 11.9 79 23-109 108-186 (204)
96 CHL00118 atpG ATP synthase CF0 90.0 8.4 0.00018 30.6 11.9 66 23-96 77-142 (156)
97 PRK13428 F0F1 ATP synthase sub 89.7 12 0.00026 35.1 13.8 51 14-64 58-108 (445)
98 PRK09098 type III secretion sy 89.1 13 0.00029 31.7 14.2 36 18-57 34-69 (233)
99 PRK08474 F0F1 ATP synthase sub 89.0 4.3 9.4E-05 33.0 9.2 30 169-202 143-172 (176)
100 PRK08476 F0F1 ATP synthase sub 88.6 10 0.00022 29.7 11.2 39 20-62 59-97 (141)
101 PRK05759 F0F1 ATP synthase sub 88.6 10 0.00022 29.7 13.6 80 23-110 59-138 (156)
102 PRK13429 F0F1 ATP synthase sub 87.9 1.7 3.7E-05 35.3 6.1 31 166-198 147-177 (181)
103 TIGR01144 ATP_synt_b ATP synth 87.8 11 0.00024 29.3 13.2 95 23-129 50-145 (147)
104 PF00430 ATP-synt_B: ATP synth 87.5 9 0.00019 28.9 9.7 66 22-95 53-118 (132)
105 CHL00119 atpD ATP synthase CF1 87.0 1.9 4E-05 35.3 5.9 32 166-199 149-180 (184)
106 TIGR02499 HrpE_YscL_not type I 87.0 13 0.00029 29.2 15.1 112 21-150 11-122 (166)
107 TIGR01145 ATP_synt_delta ATP s 86.7 2 4.4E-05 34.6 5.9 30 166-197 142-171 (172)
108 PRK05758 F0F1 ATP synthase sub 86.5 2 4.4E-05 34.7 5.9 31 166-198 145-175 (177)
109 PRK12704 phosphodiesterase; Pr 86.5 31 0.00068 33.0 15.6 25 13-37 39-63 (520)
110 KOG1662 Mitochondrial F1F0-ATP 84.9 2.7 5.9E-05 35.2 5.8 29 166-196 176-204 (210)
111 PF12072 DUF3552: Domain of un 83.6 24 0.00052 29.3 14.5 30 15-44 26-55 (201)
112 COG0711 AtpF F0F1-type ATP syn 82.2 24 0.00052 28.3 14.2 34 26-63 64-97 (161)
113 PRK00106 hypothetical protein; 82.0 51 0.0011 31.8 15.1 9 169-177 265-273 (535)
114 PF12072 DUF3552: Domain of un 81.4 30 0.00064 28.8 13.8 28 10-37 32-59 (201)
115 PRK12705 hypothetical protein; 78.7 64 0.0014 31.0 15.0 28 10-37 31-58 (508)
116 PRK12705 hypothetical protein; 77.0 72 0.0016 30.6 16.9 41 5-45 41-81 (508)
117 PF03938 OmpH: Outer membrane 64.1 67 0.0014 25.0 10.3 39 80-118 102-145 (158)
118 KOG0066 eIF2-interacting prote 59.2 35 0.00076 32.7 6.9 15 169-183 751-765 (807)
119 PRK10930 FtsH protease regulat 58.0 1.6E+02 0.0035 27.5 12.7 29 17-49 264-292 (419)
120 PF08112 ATP-synt_E_2: ATP syn 56.9 55 0.0012 21.6 7.7 47 1-52 1-47 (56)
121 PRK06569 F0F1 ATP synthase sub 55.0 1.1E+02 0.0024 24.6 12.3 35 25-63 67-101 (155)
122 PF11657 Activator-TraM: Trans 54.4 1.1E+02 0.0024 24.4 13.2 46 5-50 50-95 (144)
123 PRK01379 cyaY frataxin-like pr 52.0 41 0.00088 25.2 5.0 14 169-182 66-79 (103)
124 PRK06669 fliH flagellar assemb 51.6 1.6E+02 0.0035 25.5 15.0 36 169-204 234-276 (281)
125 TIGR01147 V_ATP_synt_G vacuola 47.9 1.2E+02 0.0027 23.1 10.0 34 20-57 13-46 (113)
126 PF05103 DivIVA: DivIVA protei 47.0 6.4 0.00014 29.9 0.0 24 14-37 76-99 (131)
127 PHA02571 a-gt.4 hypothetical p 45.4 1.3E+02 0.0029 22.8 7.1 36 2-37 12-47 (109)
128 PRK00409 recombination and DNA 39.3 2.2E+02 0.0048 28.7 9.5 10 40-49 564-573 (782)
129 PF07227 DUF1423: Protein of u 36.2 3.8E+02 0.0083 25.4 10.0 52 9-63 354-406 (446)
130 PF06903 VirK: VirK protein; 35.2 56 0.0012 24.5 3.5 43 139-187 15-57 (100)
131 TIGR03299 LGT_TIGR03299 phage/ 34.1 27 0.00058 31.3 1.9 20 172-191 135-165 (309)
132 PRK10780 periplasmic chaperone 32.3 2.6E+02 0.0056 22.2 12.5 44 84-128 113-161 (165)
133 PRK13895 conjugal transfer pro 32.2 2.6E+02 0.0057 22.3 12.9 45 5-49 50-94 (144)
134 TIGR01933 hflK HflK protein. H 32.2 3.1E+02 0.0068 23.1 10.1 37 4-49 149-185 (261)
135 PF09561 RE_HpaII: HpaII restr 31.7 39 0.00085 30.9 2.6 22 167-188 290-311 (355)
136 KOG2880 SMAD6 interacting prot 29.6 4.3E+02 0.0092 24.5 8.7 45 6-50 78-122 (424)
137 PRK12901 secA preprotein trans 29.5 5.3E+02 0.012 27.3 10.3 45 80-124 93-138 (1112)
138 PF08480 Disaggr_assoc: Disagg 27.8 35 0.00076 28.5 1.4 27 164-190 50-76 (198)
139 PF10944 DUF2630: Protein of u 27.5 85 0.0018 22.6 3.2 26 186-211 40-65 (81)
140 PRK15354 type III secretion sy 27.3 3.9E+02 0.0085 22.8 13.4 44 10-57 50-93 (224)
141 PF15640 Tox-MPTase4: Metallop 25.8 71 0.0015 25.0 2.7 29 143-183 35-64 (132)
142 PF15513 DUF4651: Domain of un 25.5 50 0.0011 22.6 1.6 14 166-181 34-47 (62)
143 PF03927 NapD: NapD protein; 25.4 2.2E+02 0.0049 19.9 5.1 19 111-129 7-25 (79)
144 TIGR01932 hflC HflC protein. H 25.1 4.8E+02 0.01 23.0 11.7 32 12-47 223-254 (317)
145 PF05384 DegS: Sensor protein 24.9 3.7E+02 0.0081 21.7 11.6 82 10-98 4-88 (159)
146 PF12860 PAS_7: PAS fold 23.2 68 0.0015 23.1 2.2 20 167-186 3-22 (115)
147 PF06067 DUF932: Domain of unk 22.1 54 0.0012 27.7 1.6 12 180-191 86-97 (239)
148 cd03405 Band_7_HflC Band_7_Hfl 21.6 4E+02 0.0087 22.0 6.9 22 16-37 161-182 (242)
149 PF09731 Mitofilin: Mitochondr 21.3 7.2E+02 0.016 23.7 15.9 26 27-52 307-332 (582)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=2.4e-56 Score=364.75 Aligned_cols=201 Identities=54% Similarity=0.793 Sum_probs=196.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (212)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~ 80 (212)
|+|.+|++||++|+.||.+||.+||+||..+|++||++||.+||++++.+|++.|++|+++++.+++|+.|+.+|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 028203 81 VLQAQDDLVSNMMEAASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 142 (212)
Q Consensus 81 iL~ar~e~i~~v~~~a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 142 (212)
+|++|+++|+++|++|..+|. |+|+.|.+|.++||||+.|..+|+++++++..+|...+|.
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~- 159 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV- 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-
Confidence 999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred CCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 028203 143 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212 (212)
Q Consensus 143 ~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~~~~ 212 (212)
++++.+|++.|||+ +|.|||+|+|.||+|.|+|||++||+.++++.+|+||+.|||.+|.
T Consensus 160 ~~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n 219 (220)
T KOG1664|consen 160 GVEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN 219 (220)
T ss_pred CceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence 59999999999986 8999999999999999999999999999999999999999999984
No 2
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=8.7e-31 Score=217.64 Aligned_cols=175 Identities=27% Similarity=0.382 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k----~k~~~~~~ri~~s~~l~~~Rl~iL~ar 85 (212)
++++++.|+++|+.++++|+.+|+.+++ +|+++...++..+.... ...++..++...|...+..|+.+|.+|
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar 79 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 77777766666543333 334444444445555557788999999
Q ss_pred HHHHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203 86 DDLVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 149 (212)
Q Consensus 86 ~e~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd 149 (212)
+++++++|+.|+++|. +++..+.+++++|+|+|.|..++.+.++++... .| ++.+.++
T Consensus 80 ~el~~~v~~~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~----~~--~~~i~~~ 153 (198)
T PRK03963 80 EELISEVLEAVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE----LG--DVEIELG 153 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHH----hC--CeEEEEC
Confidence 9999999999999998 455566788999999999999999888766533 33 3456655
Q ss_pred CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203 150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208 (212)
Q Consensus 150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~ 208 (212)
+ +++|.|||||+|.||+|+|||||++||+.++++++|+|++.|||
T Consensus 154 ~--------------~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 154 E--------------PIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG 198 (198)
T ss_pred C--------------CCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence 3 15899999999999999999999999999999999999999997
No 3
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.97 E-value=2.2e-28 Score=201.88 Aligned_cols=170 Identities=29% Similarity=0.439 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI----RKKIEYSMQLNASRIKVLQAQ 85 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~----~~ri~~s~~l~~~Rl~iL~ar 85 (212)
++.+++.|+++|+.++++|..+|+.+++ .|+.++..++++.+....+.++. -.+...|...+..|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999 99998888866554443332222 222334455556666999999
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHH-hhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcC
Q 028203 86 DDLVSNMMEAASKEVL-----------NSLL-RLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 153 (212)
Q Consensus 86 ~e~i~~v~~~a~~~L~-----------q~l~-~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~ 153 (212)
+++|+++|..|+++|. ..|+ ...+++++|+|+|.|..+++.++... . +++ +..
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~~y~~~l~~li~~~~~~~~~i~~~~~D~~~~~~~~~~~----~------~~~--~~~--- 143 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGDKREELTKSLLDAADADGVRVYSRKDDEDLVKSLLSDY----D------GLE--YAG--- 143 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhcCCCCeEEEEccccHHHHHHHHHhc----c------cCe--eCC---
Confidence 9999999999999998 2222 23467889999999999999887642 1 122 211
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203 154 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209 (212)
Q Consensus 154 L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~ 209 (212)
+++|.|||||++++|+|+|||||++||+.++++++|+|++.|||.
T Consensus 144 -----------~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~ 188 (188)
T PRK02292 144 -----------NIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188 (188)
T ss_pred -----------CCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence 147999999999999999999999999999999999999999984
No 4
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.97 E-value=1.7e-29 Score=208.43 Aligned_cols=180 Identities=32% Similarity=0.415 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (212)
Q Consensus 16 ~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~ 95 (212)
||.++|+.+|++|+.+|+++++..+..+..+....+...+.+..++++..+....|......|..+|.+|+++|+++|+.
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999996666666666666667777777777776555555555567779999999999999999
Q ss_pred HHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203 96 ASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 157 (212)
Q Consensus 96 a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~ 157 (212)
++++|. +++..+.+++++|+|++.|.++++.+++.+...|....|...+....+. .+|
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--- 156 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL--- 156 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence 999999 2333455788999999999999999877666667654444223444442 233
Q ss_pred CCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhc
Q 028203 158 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 207 (212)
Q Consensus 158 ~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF 207 (212)
++|+|||+|+++||+|+|||||++||+.+++.+.|.|++.||
T Consensus 157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF 198 (198)
T PF01991_consen 157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF 198 (198)
T ss_dssp --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence 379999999999999999999999999999999999999999
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.96 E-value=1.4e-27 Score=197.14 Aligned_cols=158 Identities=18% Similarity=0.281 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI-----RKKIEYSMQLNASRIKVLQA 84 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~-----~~ri~~s~~l~~~Rl~iL~a 84 (212)
++++++.|+++|+.+|++|..+|+.+++ .|+.++..++++..+.-.++++. .+|+.+++.+.. |+.+|++
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~-R~~~L~a 77 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA-RSIKREK 77 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHH
Confidence 7889999999999999999999999999 99998888777554444333332 589999999955 5599999
Q ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 028203 85 QDDLVSNMMEAASKEVL-----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 147 (212)
Q Consensus 85 r~e~i~~v~~~a~~~L~-----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~ 147 (212)
|+++|++||+.|+++|. +++.. .+|+++|+|++.|..++++. +++
T Consensus 78 ree~I~~v~~~a~e~L~~l~~~~~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~~-----------------~l~ 139 (185)
T PRK01194 78 RREILKDYLDIAYEHLMNITKSKEYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINNA-----------------KIK 139 (185)
T ss_pred HHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHhC-----------------cee
Confidence 99999999999999998 44444 46899999999999988752 232
Q ss_pred ecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203 148 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209 (212)
Q Consensus 148 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~ 209 (212)
+ ++ .+|.|||||+|.||+|++||||++++ ++++|.||..||..
T Consensus 140 ~-----~~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~ 182 (185)
T PRK01194 140 F-----AD----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN 182 (185)
T ss_pred e-----CC----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence 2 21 37999999999999999999998866 88889999999963
No 6
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.96 E-value=1.2e-26 Score=192.72 Aligned_cols=175 Identities=31% Similarity=0.454 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR-KKIEYSMQLNASRIKVLQAQDD 87 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~-~ri~~s~~l~~~Rl~iL~ar~e 87 (212)
.++.|+++|.++|+++|++|..+|.++++..+..........++.-+....++++.. ++|.+++.+ .+|...|+++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~l-e~r~~~Le~~ee 81 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALL-EARRKLLEAKEE 81 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 468899999999999999999999999997777777777777777777778888875 455555455 666699999999
Q ss_pred HHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 028203 88 LVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH 151 (212)
Q Consensus 88 ~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~ 151 (212)
+|+++|+.+.++|. +++.++.+++.+||+++.|..++.+.+.+ .+ ....+.
T Consensus 82 ~l~~~~~~~~e~L~~i~~~~~~~~l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~--------~~---~~~~~~-- 148 (194)
T COG1390 82 ILESVFEAVEEKLRNIASDPEYESLQELLIEALEKLLGGELVVYLNEKDKALVEQILRE--------LK---IGVELG-- 148 (194)
T ss_pred HHHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh--------cc---cchhcc--
Confidence 99999999999999 34445678888999999999998877664 11 111121
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203 152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209 (212)
Q Consensus 152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~ 209 (212)
+ +++|.|||+|++.||++++||||++||+..++.+.|.|++.|||.
T Consensus 149 ----~--------~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~ 194 (194)
T COG1390 149 ----E--------GIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV 194 (194)
T ss_pred ----c--------cCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 258999999999999999999999999999999999999999984
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.92 E-value=1.6e-22 Score=168.75 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (212)
Q Consensus 3 ~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL 82 (212)
+.+++.=+++|.+.|+.+|+.+|++|+.+|+++++ .|+.+++.++++...+-.+++...++...|+....+|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 99999999988887776766666544444444457777899
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHh-----hcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEe
Q 028203 83 QAQDDLVSNMMEAASKEVL---------NSLLR-----LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 148 (212)
Q Consensus 83 ~ar~e~i~~v~~~a~~~L~---------q~l~~-----l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~v 148 (212)
.+++++++.+.+.+.+.+. ..+.+ ..++++.|++++.|...++..|.+ .+....|. + +++
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~~~e~~~~li~~ll~~~~~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~-g--i~i 151 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVYDSNFLRELIIRVVDSWVKGDKLEIILNESDLSELESILRA---ALGNKLKK-G--IEL 151 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC-C--eEE
Confidence 9999998544333322222 22222 235678999999999999887764 33333332 2 344
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHh
Q 028203 149 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206 (212)
Q Consensus 149 d~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~L 206 (212)
.. +.+|.|||+|.+.||++.+||||+++++..++.+.|.+++.|
T Consensus 152 ~~--------------~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l 195 (198)
T PRK01558 152 KP--------------FKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI 195 (198)
T ss_pred cc--------------cCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence 32 157999999999999999999999999999999999999987
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.85 E-value=5.5e-19 Score=148.18 Aligned_cols=176 Identities=13% Similarity=0.159 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028203 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR-KKIEYSMQLNASRIKVL 82 (212)
Q Consensus 4 ~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~-~ri~~s~~l~~~Rl~iL 82 (212)
+.+++=+++|.+.|+.+|+.+|.+|+.+|+++++ .|+.+++.++....+.-.++++.. +|+.+++.+ .+|..+|
T Consensus 8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l-~~R~~~l 82 (207)
T PRK01005 8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQ-AGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5677778999999999999999999999999999 899999998888877777777764 577777777 5555999
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHH-Hhhc----C--------CceEEEeccccHHHHHHHHHHHHHHHHHHh
Q 028203 83 QAQDDLVSNMMEAASKEVL----------NSL-LRLK----E--------PAVLLRCRKDDHHLVESVLESAKEEYAQKL 139 (212)
Q Consensus 83 ~ar~e~i~~v~~~a~~~L~----------q~l-~~l~----e--------~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~ 139 (212)
.+|+++++.+|..+.+++. +.| ..+. . .-+...++|.++.-. +.....+.+..
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~-- 158 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDPEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE-- 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH--
Confidence 9999999999999999998 111 1111 0 112334555544322 22222233321
Q ss_pred CCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203 140 QVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209 (212)
Q Consensus 140 ~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~ 209 (212)
. + +++.. ..|||+|.+.||++.+|||++++++.+|+.++|.++.+|||+
T Consensus 159 -~-g--v~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~ 207 (207)
T PRK01005 159 -K-G--VSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG 207 (207)
T ss_pred -c-C--eEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence 1 2 33431 259999999999999999999999999999999999999985
No 9
>PRK09098 type III secretion system protein HrpB; Validated
Probab=99.36 E-value=4.7e-10 Score=95.93 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 028203 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE----YERKEKQVEI--RKKIEYSMQLNASRIK 80 (212)
Q Consensus 7 ~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e----~~~k~k~~~~--~~ri~~s~~l~~~Rl~ 80 (212)
=.++..-.+.|+..|+++|++|+.+|+++++ .|++++..+.+.. |.....+... ..++...... ..+ .
T Consensus 34 ~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~-~~~-~ 107 (233)
T PRK09098 34 LAAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFA-ERR-A 107 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Confidence 3456667778888888888888888888888 8887777655433 3333333322 1222222111 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHhhc--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCC-CCCe
Q 028203 81 VLQAQDDLVSNMMEAASKEVL------------NSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-HPPE 145 (212)
Q Consensus 81 iL~ar~e~i~~v~~~a~~~L~------------q~l~~l~--e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~-~~~~ 145 (212)
....++++++=++.-++.-+. +.+..+. .+.+.|+++|.|.+++...+...... .|. ..+.
T Consensus 108 ~~~~e~~Lv~lv~~~v~kiv~~~d~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~~~l~ 183 (233)
T PRK09098 108 ARRMRERLAEIVAAAVEQIVLGEDRAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRNVPVE 183 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCCcceE
Confidence 122366666666666655544 4444432 46899999999999998877754433 222 1344
Q ss_pred EEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203 146 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 202 (212)
Q Consensus 146 i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I 202 (212)
|..| ..|++ ||++|.+.+| .+|+||++||+.+++.+...+
T Consensus 184 Iv~D--p~L~~-------------GgCviET~~G--~IDasl~~ql~~L~~al~~~l 223 (233)
T PRK09098 184 VVGD--PRLAP-------------GACVCEWDFG--VFDASLDTQLRALRRALARAL 223 (233)
T ss_pred EEeC--CCCCC-------------CCeEEEeCCC--eEecCHHHHHHHHHHHHHHHh
Confidence 5555 34544 9999999998 679999999988877665433
No 10
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.33 E-value=1.2e-09 Score=94.47 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
.+.++|||+|.|.+.|....+.+...+.. ...+.|..|+ .| ..||++|.+.+|. +|+|++
T Consensus 175 ~~~i~I~v~p~d~~~v~~~~~~l~~~~~~---~~~i~i~~D~--~l-------------~~GgcvIEt~~G~--iDasld 234 (255)
T TIGR03825 175 FDEVSIYVHPHWYERVAAQKDELQSILPA---CEHLAVYPDE--KL-------------PDGGCYVETNFGR--IDASVD 234 (255)
T ss_pred CCcEEEEECHHHHHHHHHhHHHHHhhcCC---CCceEEEeCC--CC-------------CCCCeEEEcCCce--EEeeHH
Confidence 37899999999999998777654443321 1134555553 33 4599999999996 899999
Q ss_pred HHHHHHHHhchHHHH
Q 028203 189 ARLDVVFRKKLPEIR 203 (212)
Q Consensus 189 aRL~~~~e~~~p~I~ 203 (212)
+||+.+++.++-.+.
T Consensus 235 tqLe~l~~~l~~~l~ 249 (255)
T TIGR03825 235 TQLEQLKEKLLEALK 249 (255)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877664
No 11
>PRK06937 type III secretion system protein; Reviewed
Probab=99.24 E-value=2.5e-09 Score=89.55 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~ 93 (212)
...|+.+|+++|++|...|+++|+..+..=.++...+...+..+ ++..+. .....-.-...+++++=++
T Consensus 32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e---------~l~~~~--~~~~~~~~~~e~~l~~Lvl 100 (204)
T PRK06937 32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAE---------LILETV--LQCQEFYRGVEQQMSEVVL 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999944443333333333222211 111111 0111011122233333222
Q ss_pred HHHHHHHH-------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCC
Q 028203 94 EAASKEVL-------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPG 159 (212)
Q Consensus 94 ~~a~~~L~-------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~ 159 (212)
.-+++=|. +++..+. .+.++|+++|.|.+.+...+......|.+ ...+.|..|. .|
T Consensus 101 ~ia~kil~~~~~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~---~~~l~i~~D~--~L----- 170 (204)
T PRK06937 101 EAVRKILNDYDDVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPE---VGYLEVVADA--RL----- 170 (204)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCC---CccEEEEeCC--CC-----
Confidence 22222111 3333333 47899999999999999877765444432 1124565653 34
Q ss_pred CCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHH
Q 028203 160 HHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 201 (212)
Q Consensus 160 ~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~ 201 (212)
..||++|.+.+|. +|+||++||+.+...+...
T Consensus 171 --------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~ 202 (204)
T PRK06937 171 --------DQGGCILETEVGI--IDASLDGQLEALEQAFHST 202 (204)
T ss_pred --------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence 3499999999996 9999999999888776543
No 12
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=99.15 E-value=2.6e-08 Score=87.19 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=54.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
.+.+.|+++|.|+.++...+.+....+.. ..++.|..|. .| ..|||+|.+.+|. +|+|++
T Consensus 205 ~~~i~I~V~p~d~~~l~~~~~~l~~~l~~---~~~i~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~ 264 (281)
T PRK06669 205 ATDITIRVNPEDYEYVKEQKDELISLLDN---EEHLKIYEDD--AI-------------SKGGCVIETDFGN--IDARID 264 (281)
T ss_pred CCcEEEEECHHHHHHHHHhHHHHHHhcCC---CCCeEEEECC--CC-------------CCCCeEEEcCCCe--eeccHH
Confidence 36899999999999999887765544432 2245666653 23 3399999999996 999999
Q ss_pred HHHHHHHHhchH
Q 028203 189 ARLDVVFRKKLP 200 (212)
Q Consensus 189 aRL~~~~e~~~p 200 (212)
+||+.+++.++.
T Consensus 265 tqLe~l~~~L~e 276 (281)
T PRK06669 265 TQLKQLKEKLLE 276 (281)
T ss_pred HHHHHHHHHHHh
Confidence 999988877653
No 13
>PRK06328 type III secretion system protein; Validated
Probab=99.13 E-value=2.6e-08 Score=84.74 Aligned_cols=158 Identities=18% Similarity=0.261 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE-YSMQLNASRIKVLQAQDDLVSNM 92 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~-~s~~l~~~Rl~iL~ar~e~i~~v 92 (212)
.+.|+..|++.|++|...|.++++ .+.++++.+- |+....+.. ..+. ....+...+ -...+++++=+
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~eG---y~eG~~~~~--~~~~~l~~~~~~~~---~~~e~~lv~La 98 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKNQG---FKEGSKAWS--KQLAFLEEETQKLR---EQVKEALVPLA 98 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 457889999999999999999999 5655444322 222221110 0000 001111111 11223444333
Q ss_pred HHHHHHHHH---------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCC
Q 028203 93 MEAASKEVL---------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 156 (212)
Q Consensus 93 ~~~a~~~L~---------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~ 156 (212)
+.-|++=|. ++|..+. ...++|+|+|.|..+|....++....+.+. ....|..|. .|++
T Consensus 99 l~ia~kVi~~el~~d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~I~~D~--~L~~ 173 (223)
T PRK06328 99 IASVKKIIGKELELHPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLIISPKA--DVTP 173 (223)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceEEEeCC--CCCC
Confidence 333333222 3333333 467999999999999987766544444321 245666663 4543
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHH
Q 028203 157 GPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR 203 (212)
Q Consensus 157 ~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~ 203 (212)
||++|.+..| .||.|+++||+.+...+...+.
T Consensus 174 -------------GgCiIET~~G--~VDasle~ql~~l~~al~~~l~ 205 (223)
T PRK06328 174 -------------GGCIIETEAG--IINAQLDVQLAALEKAFSTILK 205 (223)
T ss_pred -------------CCeEEEeCCc--eEEecHHHHHHHHHHHHHHHHc
Confidence 9999999988 5789999999888777655543
No 14
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.94 E-value=3.4e-07 Score=73.54 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v 92 (212)
-...|+.+|+.+|+.|+..|+++++..+..-.+++..+...+........... +...+..-..-+-.+
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~------------~~~~~~~~e~~l~~l 81 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQE------------AEQLEASLEERLAEL 81 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 56789999999999999999999996666666655555554444333222111 001111111111222
Q ss_pred HHHHHHHHH--------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203 93 MEAASKEVL--------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 157 (212)
Q Consensus 93 ~~~a~~~L~--------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~ 157 (212)
.-.+.+++. +.+..+. .+.+.|+|+|.|.+.+...+.+... .. ...|..|. .
T Consensus 82 ~~~~~~kil~~~~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~----~~---~~~i~~D~--~---- 148 (166)
T TIGR02499 82 VLQALEQILGEYDEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLA----LE---PWELEPDA--S---- 148 (166)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhc----cC---CeEEeeCC--C----
Confidence 223333333 3333333 4789999999999999887775321 11 13454442 2
Q ss_pred CCCCCCCCCCCCCcEEEEecCCcEEE
Q 028203 158 PGHHNAHGPSCSGGVVVASRDGKIVC 183 (212)
Q Consensus 158 ~~~~~~~~~~~~GGvvl~s~dG~I~~ 183 (212)
-+.||++|.+.+|.|.+
T Consensus 149 ---------l~~G~c~vet~~G~vda 165 (166)
T TIGR02499 149 ---------LAPGACVLETESGVVDL 165 (166)
T ss_pred ---------CCCCCEEEEeCCceeeC
Confidence 35599999999998754
No 15
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=3e-06 Score=72.58 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 028203 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL- 82 (212)
Q Consensus 4 ~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL- 82 (212)
++..+.+..+...+...+.+.++.|...+++-|+ ..++.+..+-.++....-+..+.-.....+... ......
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~~~e~~~~li~~~~~--~~~~~~~ 113 (234)
T COG1317 40 EELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGRVLERLAKLIAEFQA--ELEALKE 113 (234)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4567788888889999999999999999999998 777766666555543221100000000011100 000011
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHhhc-CC-ceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCe
Q 028203 83 QAQDDLVSNMMEAASKEVL---------------NSLLRLK-EP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPE 145 (212)
Q Consensus 83 ~ar~e~i~~v~~~a~~~L~---------------q~l~~l~-e~-~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~ 145 (212)
....++++-++.-|++=|. ++|..+. .+ .+.|+|+|.|+.+|...+++....+ +- ...
T Consensus 114 ~~e~qLv~lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~----~~-~l~ 188 (234)
T COG1317 114 VVEKQLVQLVLEIARKVIGKELELDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL----GW-RLE 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc----ch-hee
Confidence 1244445545544444333 3333322 33 8999999999999999887543322 21 122
Q ss_pred EEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203 146 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 202 (212)
Q Consensus 146 i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I 202 (212)
|..| ..|+ -||++|++..| .+|=|+++||..+...+.+..
T Consensus 189 l~~D--~~l~-------------~GgC~IeTe~G--~iDasld~ql~~L~~~~~~~~ 228 (234)
T COG1317 189 LVAD--PALS-------------PGGCIIETEFG--IIDASLDTQLAALKRALLESL 228 (234)
T ss_pred eccC--CCCC-------------CCCeEEEecCc--cccccHHHHHHHHHHHHHhhh
Confidence 4344 2343 39999999988 568899999999988877754
No 16
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.82 E-value=3.4e-06 Score=72.63 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHH-
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY-SMQLNASRI------KVLQA- 84 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~-s~~l~~~Rl------~iL~a- 84 (212)
-....+++|+.++.+|...|..+++.++..++.++..++....++....++.++.-.. ........+ ++|..
T Consensus 61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~ 140 (246)
T TIGR03321 61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDL 140 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455777889999999999999999888888888888887766666555554322111 111111111 22211
Q ss_pred -HHHHHHHHHHHHHHHHH-------HHHHhhc---CCceEEE-eccccHHHHHHHHHHHHHHHHHHhCCC-CCeEEecCC
Q 028203 85 -QDDLVSNMMEAASKEVL-------NSLLRLK---EPAVLLR-CRKDDHHLVESVLESAKEEYAQKLQVH-PPEIIVDHH 151 (212)
Q Consensus 85 -r~e~i~~v~~~a~~~L~-------q~l~~l~---e~~v~v~-~~~~D~~lv~~~l~~~~~~~~~~~~~~-~~~i~vd~~ 151 (212)
-.+.=..+++...++|. +.|..+. +..+.|+ ..|=+-.....+... +...+|.. .++..+|
T Consensus 141 ~d~~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~----l~~~~~~~v~~~~~vd-- 214 (246)
T TIGR03321 141 ADTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDT----IRETLGPEIRLRFQTE-- 214 (246)
T ss_pred cChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHH----HHHHHCCCeeEEeeeC--
Confidence 00111122333333333 2232211 2234443 233333333333322 22234431 2334444
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.+|||+|.. |..++|+|+.++|+.+...+
T Consensus 215 --------------p~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 215 --------------PDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred --------------chhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 48999999998 89999999999999887653
No 17
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.71 E-value=4.6e-06 Score=69.37 Aligned_cols=138 Identities=21% Similarity=0.301 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v 92 (212)
-...|+++|+.+|++|+..|+++++ .+++.+..++.+.+-+....... .....|..+...-.+....+
T Consensus 31 ~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll~--------~~~~~~e~l~~~l~~~~~~l 98 (191)
T PF06188_consen 31 QAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALLQ--------EWQQQREQLLQQLEEQAEEL 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999 88887777766666544332211 11122324444445555666
Q ss_pred HHHHHHHHH---------HHHH-----h-hcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203 93 MEAASKEVL---------NSLL-----R-LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 157 (212)
Q Consensus 93 ~~~a~~~L~---------q~l~-----~-l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~ 157 (212)
+..+.++|- ..|+ . .....+.++|.|.+.+.|...+.+.. ....++..| ..|++
T Consensus 99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~~~~~~~tL~~hP~~~~~V~~~L~~~~--------~~~w~l~~D--~sl~~- 167 (191)
T PF06188_consen 99 LSQALERLLDETPDQQRVAALLRQLLASQRQESEATLRCHPDQLEEVAAWLAEHP--------ALHWQLQAD--ESLAP- 167 (191)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcccccceEEEECHHHHHHHHHHHHhCC--------CcceeeccC--CCCCC-
Confidence 666666666 1222 1 22568899999999999988877421 113455555 45655
Q ss_pred CCCCCCCCCCCCCcEEEEecCCcEEEcc
Q 028203 158 PGHHNAHGPSCSGGVVVASRDGKIVCEN 185 (212)
Q Consensus 158 ~~~~~~~~~~~~GGvvl~s~dG~I~~dN 185 (212)
|..+|.+..|...+|.
T Consensus 168 ------------~~l~L~t~~G~~~l~w 183 (191)
T PF06188_consen 168 ------------DQLKLETANGEFRLDW 183 (191)
T ss_pred ------------CceEEEcCCCcEEECH
Confidence 7899999999988874
No 18
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.34 E-value=6.3e-05 Score=64.55 Aligned_cols=70 Identities=10% Similarity=0.241 Sum_probs=50.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
...++|+|+|.|..+|...+++.. ....|..|. .|+ .||++|.+.+| .+|.|++
T Consensus 162 ~~~v~I~vnP~D~~~l~~~~~e~~---------~~~~l~~D~--~l~-------------~GgC~Iet~~g--~iDa~ie 215 (236)
T PRK13386 162 PEQLKVHLNPEEFGRLKDLAPEKV---------QAWGLVADP--SLS-------------AGECRIVTDTS--EADAGCE 215 (236)
T ss_pred CCCeEEEECHHHHHHHHHhhhccc---------cCeEEEeCC--CcC-------------CCCEEEEeCCc--eEeeCHH
Confidence 368999999999999987665411 135666664 343 39999999877 6799999
Q ss_pred HHHHHHHHhchHHHHHHhcC
Q 028203 189 ARLDVVFRKKLPEIRKQLVS 208 (212)
Q Consensus 189 aRL~~~~e~~~p~I~~~LF~ 208 (212)
+||+.+.+. ++..|++
T Consensus 216 tRl~~~~~~----l~~~l~~ 231 (236)
T PRK13386 216 HRLDACMDA----VKEHLLT 231 (236)
T ss_pred HHHHHHHHH----HHHhccc
Confidence 999776554 4444544
No 19
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=98.27 E-value=7.9e-05 Score=56.87 Aligned_cols=61 Identities=28% Similarity=0.510 Sum_probs=45.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
.+.+.|+++|.|.+.+...+.+....+ +..+..|. .|++ ||++|.+.+| .+|.|++
T Consensus 67 ~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~~~l~~D~--~l~~-------------G~c~iet~~g--~iD~~i~ 122 (128)
T PF02108_consen 67 EEKVTIRVHPDDYEALEELLEDELPEL-------GWELVADP--SLAP-------------GDCRIETEDG--IIDASIE 122 (128)
T ss_pred CCCeEEEECHHHHHHHHHHHHHHHhhc-------CCEEEecC--CCCC-------------CCEEEEECCe--eEEeCHH
Confidence 578999999999999988877332211 34666664 4543 9999999877 6788999
Q ss_pred HHHHH
Q 028203 189 ARLDV 193 (212)
Q Consensus 189 aRL~~ 193 (212)
+||+.
T Consensus 123 ~ql~~ 127 (128)
T PF02108_consen 123 TQLEA 127 (128)
T ss_pred HHHhc
Confidence 99964
No 20
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.19 E-value=0.00019 Score=61.60 Aligned_cols=68 Identities=28% Similarity=0.412 Sum_probs=51.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
.+.+.|+|+|.|..+|+..+.. .+.. . +..|..|. .|+ .||++|.+.+|. +|.|++
T Consensus 175 ~~~v~i~v~P~D~~~v~~~~~~---~~~~-~---~~~l~~D~--~l~-------------~Ggc~iet~~g~--vDa~l~ 230 (246)
T PRK05687 175 SGKPQLRVNPDDLELVEQLLGA---ELSL-H---GWRLLADP--SLH-------------RGGCRISAEEGD--VDASLE 230 (246)
T ss_pred CCCceEEECHHHHHHHHHHHhh---HHHh-C---CeEEEeCC--CcC-------------CCCeEEEeCCCc--eeccHH
Confidence 4689999999999999987763 2211 1 45676764 444 399999999886 678999
Q ss_pred HHHHHHHHhchH
Q 028203 189 ARLDVVFRKKLP 200 (212)
Q Consensus 189 aRL~~~~e~~~p 200 (212)
+|++.+++.+.+
T Consensus 231 ~r~~~l~~~l~~ 242 (246)
T PRK05687 231 TRWQEVCRLLAP 242 (246)
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
No 21
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=97.83 E-value=0.012 Score=49.07 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203 109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle 188 (212)
.+.+.|+++|.|...+...+++....+ |. .+.+.|-.+..|++ ||++|.+.+|.+ ++|+.
T Consensus 127 ~~~v~I~v~P~d~~~l~~~l~~~~~~~----~~-~~~~~l~~D~~L~~-------------G~c~vet~~G~v--d~d~~ 186 (199)
T PRK06032 127 TPHLVVRVNDALVEAARERLERLARES----GF-EGRLVVLADPDMAP-------------GDCRLEWADGGV--VRDRA 186 (199)
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhc----Cc-CccEEEeeCCCCCC-------------CCeEEEeCCCeE--ecCHH
Confidence 467999999999999998887654433 32 34444443445654 999999998865 55667
Q ss_pred HHHHHHHHh
Q 028203 189 ARLDVVFRK 197 (212)
Q Consensus 189 aRL~~~~e~ 197 (212)
+|...+.+.
T Consensus 187 ~~~~~I~~a 195 (199)
T PRK06032 187 AIEARIEEA 195 (199)
T ss_pred HHHHHHHHH
Confidence 766655443
No 22
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=97.78 E-value=0.014 Score=50.46 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~ 65 (212)
-..-+++|+.++.+|+..|..+++.++..++.+++.++.....+....++.+
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~E 113 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLERE 113 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888999999999998888888888887777766666555543
No 23
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=97.67 E-value=0.021 Score=53.35 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=28.6
Q ss_pred CCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 165 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 165 ~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
+++++|||+|.- |..++|.|+.+||+.+...+
T Consensus 412 DpsLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 412 DPELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred CchhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence 369999999998 89999999999999887664
No 24
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=97.62 E-value=0.0022 Score=52.19 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~ 88 (212)
++..-...++.+|+.+|.+|+..|..+++.++..++.++..++....++....++ ..+.+ .+...|+++
T Consensus 74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie----------~Ek~~-a~~elk~ei 142 (167)
T PRK08475 74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELME----------FEVRK-MEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHH
Confidence 4455667788899999999999999999988888887777666555444333333 33333 778899999
Q ss_pred HHHHHHH
Q 028203 89 VSNMMEA 95 (212)
Q Consensus 89 i~~v~~~ 95 (212)
++++|+.
T Consensus 143 i~~~~~~ 149 (167)
T PRK08475 143 LNELFES 149 (167)
T ss_pred HHHHHHh
Confidence 9999998
No 25
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=97.51 E-value=0.032 Score=46.89 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~ 94 (212)
..++..|+..|..|...|+..|+.++++=.++....-.++..+ .+.....--..++..| .+++.+=|+
T Consensus 33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~---------llaqa~a~v~r~~a~L--E~~l~~LVl- 100 (207)
T PF06635_consen 33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAAR---------LLAQATAEVARYLAGL--EQELAELVL- 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHH--HHHHHHHHH-
Confidence 3567889999999999999999976666555554322222211 1111111112332333 233333333
Q ss_pred HHHHHHH--------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCC
Q 028203 95 AASKEVL--------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPG 159 (212)
Q Consensus 95 ~a~~~L~--------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~ 159 (212)
.+..+|. +.|..+. +..+.|+++|.|.+.+...+..+ ....|.+.+.|..| -.|++
T Consensus 101 ~~Vr~ILg~fd~~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~----~~~~g~~~i~I~aD--p~La~--- 171 (207)
T PF06635_consen 101 EIVRKILGEFDPDELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL----EGRPGRPKIRIVAD--PRLAA--- 171 (207)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh----hccCCCCceeeecC--CCCCC---
Confidence 3333443 3333333 45899999999999998877654 22233333455444 45654
Q ss_pred CCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchH
Q 028203 160 HHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 200 (212)
Q Consensus 160 ~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p 200 (212)
|.+||.|+-| .+|-+|++-|+.++.-+.|
T Consensus 172 ----------~~Cvlese~G--~VdagL~aQL~ALr~a~~~ 200 (207)
T PF06635_consen 172 ----------GQCVLESEFG--VVDAGLDAQLRALRLAFGP 200 (207)
T ss_pred ----------CCeeeecccc--hhhccHHHHHHHHHHHhcc
Confidence 8899999999 4677899999888777665
No 26
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=97.23 E-value=0.016 Score=47.99 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~ 64 (212)
++.++-+.-+..|+.+|+.+|++|..+|+++++..+..+..+....+...+++....+.+
T Consensus 9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~L 68 (185)
T PRK01194 9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANI 68 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445666677788888888888888888888888777777777766666665555444443
No 27
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.86 E-value=0.066 Score=43.92 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ 49 (212)
++.++-+.-++.|+.+|+.++++|..+|+++++..+..+..+...
T Consensus 9 ~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~ 53 (188)
T PRK02292 9 DIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAER 53 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888888888888888444444443333
No 28
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.74 E-value=0.094 Score=43.29 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~ 61 (212)
.-+++|...|+.+++ .|+.+++.++.+..+...++
T Consensus 6 ~i~~~il~~A~~ea~----~il~~A~~~a~~i~~~a~~~ 40 (198)
T PRK03963 6 LIIQEINREAEQKIE----YILEEAQKEAEKIKEEARKR 40 (198)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666 66666666555554443333
No 29
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=96.52 E-value=0.016 Score=47.57 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 199 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~ 199 (212)
++++|||+|.. |.-++|.|+.+||+.+...+.
T Consensus 147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 48999999998 899999999999998887654
No 30
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.39 E-value=0.17 Score=42.18 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k 58 (212)
+|+.+++.|.+ +|..+|+++++ .|+.+++.+++.-....
T Consensus 4 ~~~~l~dki~~-------~~~eeA~~eA~----~Ii~eA~~eAe~Ii~eA 42 (198)
T PRK01558 4 EVKDLINKIKK-------DGLEEAERLAN----EIILEAKEEAEEIIAKA 42 (198)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44455554443 34455555555 66666665555443333
No 31
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=96.38 E-value=0.27 Score=37.30 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+...-.+.|..+|+.+|.+|+.+|+.++...++.++......+..+...-+.+.+
T Consensus 25 eAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae 79 (108)
T COG2811 25 EAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAE 79 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677777777777777777777777777777776666666555444433
No 32
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=96.33 E-value=0.16 Score=42.84 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (212)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~ 53 (212)
|.+-..+..|+.+++.|. ++|+..|+.++. .|+.+++.+...
T Consensus 1 ~~~~~~~~k~q~L~dki~-------~eiL~eA~~eA~----~Il~eAk~~Ae~ 42 (207)
T PRK01005 1 MADLSAQDKLKQICDALR-------EETLKPAEEEAG----AIVHNAKEQAKR 42 (207)
T ss_pred CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 445556667777777776 667777888888 888877766654
No 33
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=96.26 E-value=0.6 Score=39.43 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~ 93 (212)
..-|++.|..||.+|+..|..+-. .+..+....++.-..+-+.+.| +..-.....-|-+-++....+.
T Consensus 43 s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E--------~~~L~qHV~wLve~e~lE~sLV 110 (224)
T PRK15354 43 SHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKME--------VEWLEQHVKHLQEDENQFRSLV 110 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHH
Confidence 457899999999999988887766 6666555444433333222222 2222333344555555555556
Q ss_pred HHHHHHHH-----------------HHHH--------hh-cCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 028203 94 EAASKEVL-----------------NSLL--------RL-KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 147 (212)
Q Consensus 94 ~~a~~~L~-----------------q~l~--------~l-~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~ 147 (212)
..++.+|. +.|+ ++ .++..++++.|.+...+...+.. .+++.
T Consensus 111 ~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~afG~------------R~~~v 178 (224)
T PRK15354 111 DHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETFGK------------RFTLI 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHHhc------------ceeee
Confidence 66665555 2222 22 26788999999999888665542 45666
Q ss_pred ecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHH
Q 028203 148 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVV 194 (212)
Q Consensus 148 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~ 194 (212)
+|. .|++ +--.|.|+ ...+..+|+.-|...
T Consensus 179 ~d~--~~a~-------------dQAeLsSp--~l~v~~sL~rHL~qL 208 (224)
T PRK15354 179 IEP--GFSP-------------DQAELSST--RYAVEFSLSRHFNAL 208 (224)
T ss_pred ecC--CcCh-------------hhHHhcCC--ceEEeeeHHHHHHHH
Confidence 663 3332 33345553 566666676665443
No 34
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.96 E-value=0.53 Score=38.31 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCcEEEcc-----cHHHHHHHHHHhchHHHHHHh
Q 028203 178 DGKIVCEN-----TLDARLDVVFRKKLPEIRKQL 206 (212)
Q Consensus 178 dG~I~~dN-----TleaRL~~~~e~~~p~I~~~L 206 (212)
-|++++-+ .++.-++..++.+.+.++..+
T Consensus 160 ~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i 193 (198)
T PF01991_consen 160 IGGFILESEDGKIRVDNTFESRLERLKEEIRPEI 193 (198)
T ss_dssp SSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHH
T ss_pred cceEEEEECCCCEEEECCHHHHHHHHHHHhHHHH
Confidence 56777743 377778999999888887654
No 35
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=95.76 E-value=0.023 Score=46.75 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 199 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~ 199 (212)
++++|||+|.- |.-++|.|+.+||+.+...+.
T Consensus 143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 48999999998 889999999999999988874
No 36
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.64 E-value=0.53 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
.-...|+.+|+.++.+|+..|..+++
T Consensus 9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~ 34 (85)
T TIGR02926 9 EDAEELIEEAEEERKQRIAEAREEAR 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666
No 37
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=95.57 E-value=0.69 Score=34.67 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+.-...++.+|+.++.+|+..|..+++..+..++.++..++..-.+.-.+.++
T Consensus 12 E~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie 64 (103)
T PRK08404 12 EKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGE 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777777766666666555555544444444443
No 38
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=95.56 E-value=0.73 Score=36.75 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~ 94 (212)
...+++|+.++.+|+..|..+++ .++.+...++..+..+ ....++..+-..|+.++.++..
T Consensus 60 e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~---------------~~~~a~~~I~~ek~~a~~el~~ 120 (159)
T PRK09173 60 QRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVAR---------------RNKLAEQKIAQAETDAINAVRS 120 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655 4444444444333322 2334444555556666666555
Q ss_pred HHHHHHHHHHHhhcCCceEEEeccccHHHHHHHHHH
Q 028203 95 AASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLES 130 (212)
Q Consensus 95 ~a~~~L~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~ 130 (212)
.+.+--.+...++.+..+ ....+..++..++.+
T Consensus 121 ~~~~lA~~~A~kil~~~l---~~~~~~~li~~~i~~ 153 (159)
T PRK09173 121 SAVDLAIAAAEKLLAEKV---DAKAASELFKDALAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHH
Confidence 554433344445444432 122334566666654
No 39
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=95.50 E-value=0.8 Score=36.52 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA---- 84 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~a---- 84 (212)
+.+.-...|..+|+..++.+...|..+++.+..++...+...|..+..+-..++.. .+ ....+..+. ++|..
T Consensus 65 ~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~--~~-~~lA~~~A~-kil~~~l~~ 140 (159)
T PRK09173 65 EAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS--SA-VDLAIAAAE-KLLAEKVDA 140 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHH-HHHHhhcCH
Confidence 44556778889999999999999999999888888888888887765555444432 11 222222222 33322
Q ss_pred --HHHHHHHHHHHHHHHH
Q 028203 85 --QDDLVSNMMEAASKEV 100 (212)
Q Consensus 85 --r~e~i~~v~~~a~~~L 100 (212)
...+|++.+..+-++|
T Consensus 141 ~~~~~li~~~i~~~~~~~ 158 (159)
T PRK09173 141 KAASELFKDALAQVKTRL 158 (159)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 3456666666665544
No 40
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=95.40 E-value=0.89 Score=36.87 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k 58 (212)
-....+++|+.+|.+|+..|..+++..+..++.++...+.......
T Consensus 75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a 120 (174)
T PRK07352 75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTA 120 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888776676666665555444433
No 41
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=95.39 E-value=0.87 Score=37.34 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE 59 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~ 59 (212)
-....+++|+.++.+|+..|..+++.++..++.++..++......-.
T Consensus 80 e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~ 126 (184)
T CHL00019 80 KARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKN 126 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888887777777776665554444433
No 42
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=95.34 E-value=0.054 Score=47.41 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=28.1
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.+|||+|.- |.-++|+|+.+||+.+...+
T Consensus 239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL 269 (271)
T ss_pred ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence 48999999998 89999999999999888765
No 43
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=95.24 E-value=0.83 Score=34.23 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a 96 (212)
+|+.++++++..|+.++. .|+..++......|+....++.. .....+..+|..+=..++.++.++-..+
T Consensus 10 ~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~----eA~~ile~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 10 KAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEE----EAQKLIEKKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777877777777 78877777777777776665543 2223344445455555555554444433
No 44
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.22 E-value=0.44 Score=34.24 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~ 62 (212)
+|+.++++++..|+.++. .|+..++......+......+
T Consensus 6 ~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A 44 (85)
T TIGR02926 6 KAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEA 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555 555555544444444444333
No 45
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=95.21 E-value=0.99 Score=34.26 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=42.8
Q ss_pred CChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 1 MNDADVSKQIQQ---MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 1 ~~~~~~~~~i~~---m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
|++.++-..|.+ -.....++|++.++.|+..|++++. .|+.+...++.+.++.-+....
T Consensus 3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e~l~~~~ 64 (108)
T COG2811 3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQEILEEAR 64 (108)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555543 3566778899999999999999998 8888888888877766555433
No 46
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=95.16 E-value=1.2 Score=35.98 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
...+++|+.++.+|+..|..+++
T Consensus 68 e~~L~~A~~ea~~Ii~~A~~~a~ 90 (167)
T PRK14475 68 KAEREEAERQAAAMLAAAKADAR 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666555
No 47
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=95.07 E-value=1.3 Score=37.17 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~ 55 (212)
.-.+..+++|+.+|.+|+..|.++++..+..++.++..+++...
T Consensus 103 ~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii 146 (205)
T PRK06231 103 ENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLII 146 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888666666665555444433
No 48
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=95.04 E-value=1.4 Score=36.70 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~ 99 (212)
+++...+.|...|+++++ .|..++..++....++..+.++.. ....+...+.+.-..++.++..+.-+++..
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea~~~~~~~----~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEAKREAEEA----IEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999 888877776665544443333321 111122333344455566666655555544
Q ss_pred HH-------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHH
Q 028203 100 VL-------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 136 (212)
Q Consensus 100 L~-------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~ 136 (212)
+. ++++....+.+.-..++.+...+..++.++...|.
T Consensus 75 ~Le~~ee~l~~~~~~~~e~L~~i~~~~~~~~l~~ll~~~~~~~~ 118 (194)
T COG1390 75 LLEAKEEILESVFEAVEEKLRNIASDPEYESLQELLIEALEKLL 118 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHhcC
Confidence 44 23333333333334555566667777776666554
No 49
>PRK00106 hypothetical protein; Provisional
Probab=94.96 E-value=3.7 Score=39.49 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~ 46 (212)
...|+.+|+.+|++|+.+|..+++.++..+..+
T Consensus 44 A~~IleeAe~eAe~I~keA~~EAke~~ke~~lE 76 (535)
T PRK00106 44 AVNLRGKAERDAEHIKKTAKRESKALKKELLLE 76 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777777777666665444444333
No 50
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=94.78 E-value=1.7 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~ 53 (212)
-+..+.+|+.++.+|+..|+.+++.++..++.++..++..
T Consensus 75 ~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~ 114 (173)
T PRK13453 75 NKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666666555544443
No 51
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=94.73 E-value=1.7 Score=34.60 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
-....+.+|+.++.+|+..|..+++..+..++.++..++....+.
T Consensus 61 e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~ 105 (159)
T PRK13461 61 KNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIER 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888888888877777777666655544433
No 52
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=94.68 E-value=1.9 Score=34.94 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE 54 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e 54 (212)
-....+++|+.++.+|+..|..+++..+..++.++..++...
T Consensus 72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~ 113 (173)
T PRK13460 72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ 113 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888888866666655555444433
No 53
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=94.67 E-value=1.8 Score=35.05 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q 102 (212)
.++++....|+.++. .|+.+++..+....+....++.. .....+..++..+-..++.++.++..++..--.+
T Consensus 71 ~e~e~~l~~a~~ea~----~ii~~A~~ea~~~~~~~~~~A~~----ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~ 142 (173)
T PRK13460 71 KDYEARLNSAKDEAN----AIVAEAKSDALKLKNKLLEETNN----EVKAQKDQAVKEIELAKGKALSQLQNQIVEMTIT 142 (173)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666 88888888777777766665543 2333444555566666666666665555543334
Q ss_pred HHHhhcCCceEEEecccc-HHHHHHHHHH
Q 028203 103 SLLRLKEPAVLLRCRKDD-HHLVESVLES 130 (212)
Q Consensus 103 ~l~~l~e~~v~v~~~~~D-~~lv~~~l~~ 130 (212)
...++..+.+ ++.| ..++..++.+
T Consensus 143 ~a~kil~~~l----~~~~~~~lid~~i~~ 167 (173)
T PRK13460 143 IASKVLEKQL----KKEDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence 4445444432 3343 3455665553
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=94.65 E-value=1.8 Score=34.60 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVE 45 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~ 45 (212)
-.+..+.+|+.++.+|+..|+++++..+..++.
T Consensus 64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~ 96 (164)
T PRK14471 64 DNERLLKEARAERDAILKEAREIKEKMIADAKE 96 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777633333333
No 55
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=94.41 E-value=2.2 Score=34.41 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
+++....|+.++. .|+.++.......++....++.. .....+..++..+-..++.++.++...+.+--.+..
T Consensus 67 ~e~~L~~A~~ea~----~Ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A 138 (167)
T PRK14475 67 VKAEREEAERQAA----AMLAAAKADARRMEAEAKEKLEE----QIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAA 138 (167)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666 88888888888777776665543 233445566667777777777777766655444444
Q ss_pred HhhcCCceEEEeccccHHHHHHHHHH
Q 028203 105 LRLKEPAVLLRCRKDDHHLVESVLES 130 (212)
Q Consensus 105 ~~l~e~~v~v~~~~~D~~lv~~~l~~ 130 (212)
.++....+ ....+..+|.+++.+
T Consensus 139 ~kil~~~l---~~~~~~~lid~~i~~ 161 (167)
T PRK14475 139 ETVLAARL---AGAKSDPLVDAAIGQ 161 (167)
T ss_pred HHHHHhHc---CHHHHHHHHHHHHHH
Confidence 45544332 223344566666654
No 56
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=94.40 E-value=2.2 Score=34.38 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~ 61 (212)
+..-....+.+|+.+|.+|+..|.++++ ++.++...+++.+.++...+
T Consensus 57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~----~~~~ea~~eA~~ea~r~~~~ 104 (154)
T PRK06568 57 LFEQTNAQIKKLETLRSQMIEESNEVTK----KIIQEKTKEIEEFLEHKKSD 104 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888888888888888888 66666665555555444333
No 57
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=94.31 E-value=2.2 Score=34.11 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
..-....+.+|+.+|.+|+..|..+++..+..++.++..++....+.
T Consensus 62 ~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~ 108 (164)
T PRK14473 62 KRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEE 108 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777777777766666666665555444333
No 58
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=94.23 E-value=1.2 Score=35.47 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~ 62 (212)
..-....+++|+.+|.+|...|.++++.++..++.++..++....+.-..++
T Consensus 76 ~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 76 TKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788888888888888888886666666666555554444433333
No 59
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=94.20 E-value=2.5 Score=34.27 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~ 52 (212)
.+..+.+|+.+|.+|...|+++++..+..++.++..++.
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~ 113 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAK 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777555555554444333
No 60
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=94.18 E-value=2.6 Score=34.46 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEecccc-HHHHHHHHHHHH
Q 028203 74 LNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDD-HHLVESVLESAK 132 (212)
Q Consensus 74 l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l~~l~e~~v~v~~~~~D-~~lv~~~l~~~~ 132 (212)
+..++..+-..++.++.++...+.+--.+...++.+.. .++.| ..+|...+.+..
T Consensus 125 ~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~----l~~~~~~~lid~~i~~l~ 180 (184)
T PRK13455 125 LAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQ----MTAADANALIDEAIKEVE 180 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHh
Confidence 33444455555555555555444433333333443332 13333 356666666543
No 61
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=94.14 E-value=2.3 Score=35.68 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv 44 (212)
-.+..+.+|+.++.+|+..|+++++.++..++
T Consensus 109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~ 140 (204)
T PRK09174 109 AYEQELAQARAKAHSIAQAAREAAKAKAEAER 140 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666663333333
No 62
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=94.06 E-value=2.6 Score=34.54 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE 47 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~ 47 (212)
..-.+.++++|+.++.+|+..|.++++.++..++.+.
T Consensus 85 ~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 85 EKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777777766664444444433
No 63
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=93.91 E-value=1.7 Score=33.69 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
-.+..+++|+.++.+|...|..+++.++..++.++..++....+.
T Consensus 61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~ 105 (140)
T PRK07353 61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEK 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777766666666665555444433
No 64
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=93.90 E-value=2.7 Score=33.61 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL 101 (212)
Q Consensus 22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~ 101 (212)
..+.+.....|+.++. .|+.+++.++...++....++.. .....+..++..+-..++.++.++...+..--.
T Consensus 62 ~~e~e~~l~~A~~ea~----~ii~~A~~~a~~~~~~~l~~A~~----ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~ 133 (164)
T PRK14473 62 KRDYEAELAKARQEAA----KIVAQAQERARAQEAEIIAQARR----EAEKIKEEARAQAEQERQRMLSELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777 99999988888887777766553 233445566666777777777777666555444
Q ss_pred HHHHhhcCCceEEEeccccHHHHHHHHH
Q 028203 102 NSLLRLKEPAVLLRCRKDDHHLVESVLE 129 (212)
Q Consensus 102 q~l~~l~e~~v~v~~~~~D~~lv~~~l~ 129 (212)
+...++.+..+ -...+..++..++.
T Consensus 134 ~~a~kil~~~l---~~~~~~~li~~~i~ 158 (164)
T PRK14473 134 LTASRVLGAEL---QARGHDALIAESLA 158 (164)
T ss_pred HHHHHHHHhHc---CHHHHHHHHHHHHH
Confidence 55555555443 22334556666665
No 65
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=93.86 E-value=2.9 Score=33.85 Aligned_cols=96 Identities=10% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNS 103 (212)
Q Consensus 24 ka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~ 103 (212)
+++.....|+.++. .|+.++...+....+....++.. .....+..++..+-..++.++.++...+-+--.+.
T Consensus 74 e~e~~L~~a~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~ 145 (175)
T PRK14472 74 KNRELLAKADAEAD----KIIREGKEYAEKLRAEITEKAHT----EAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKG 145 (175)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666 88888877777776666555543 23334445555666666666666666555443334
Q ss_pred HHhhcCCceEEEeccc-cHHHHHHHHHHH
Q 028203 104 LLRLKEPAVLLRCRKD-DHHLVESVLESA 131 (212)
Q Consensus 104 l~~l~e~~v~v~~~~~-D~~lv~~~l~~~ 131 (212)
..++.+..+ ++. +..+|..++.+.
T Consensus 146 a~kil~~~l----~~~~~~~li~~~i~~l 170 (175)
T PRK14472 146 AEKIIRTSL----DADKQKKVVDSMIQDL 170 (175)
T ss_pred HHHHHHHHC----CHHHHHHHHHHHHHHh
Confidence 444444332 223 334666666554
No 66
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=93.84 E-value=2.7 Score=36.20 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=27.0
Q ss_pred CCcEEEEec----CCcEEEcc---cHHHHHHHHHHhchHHHHHHh
Q 028203 169 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEIRKQL 206 (212)
Q Consensus 169 ~GGvvl~s~----dG~I~~dN---TleaRL~~~~e~~~p~I~~~L 206 (212)
.|++.|... .|+.+|.. ++++.|+.-++.+...+...|
T Consensus 204 ~~~i~i~~D~~l~~GgcvIEt~~G~iDasldtqLe~l~~~l~~~l 248 (255)
T TIGR03825 204 CEHLAVYPDEKLPDGGCYVETNFGRIDASVDTQLEQLKEKLLEAL 248 (255)
T ss_pred CCceEEEeCCCCCCCCeEEEcCCceEEeeHHHHHHHHHHHHHHHH
Confidence 467666654 47777764 467888888888877777776
No 67
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=93.81 E-value=2.8 Score=33.39 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
++.....|+.++. .|+.+++......++....++.. .....+..++..+-..+...+.++...+..--....
T Consensus 62 ~~~~l~~a~~ea~----~ii~~a~~~a~~~~~~i~~~A~~----ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a 133 (159)
T PRK13461 62 NERELKNAKEEGK----KIVEEYKSKAENVYEEIVKEAHE----EADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLS 133 (159)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666 88887777777776666555543 233344455545555566665555555544333333
Q ss_pred Hhhc
Q 028203 105 LRLK 108 (212)
Q Consensus 105 ~~l~ 108 (212)
.++.
T Consensus 134 ~kil 137 (159)
T PRK13461 134 SKAL 137 (159)
T ss_pred HHHH
Confidence 3433
No 68
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=93.64 E-value=0.25 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=27.4
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.+||++|.. |.-++|.|+.++|+.+...+
T Consensus 147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 48999999998 89999999999998876553
No 69
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=93.57 E-value=2.4 Score=34.27 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (212)
Q Consensus 21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L 100 (212)
...+++++..+|+.++. .|+.+++..++..++....++... ....+..++..+-..++.++.++..++...+
T Consensus 75 ~~~e~e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~e----a~~~~~~a~~~ie~Ek~~a~~elk~eii~~~ 146 (167)
T PRK08475 75 KKEDALKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDD----IENLIKSFEELMEFEVRKMEREVVEEVLNEL 146 (167)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888 999999998888888777766542 2233344444566666666666665555544
Q ss_pred H
Q 028203 101 L 101 (212)
Q Consensus 101 ~ 101 (212)
-
T Consensus 147 ~ 147 (167)
T PRK08475 147 F 147 (167)
T ss_pred H
Confidence 4
No 70
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=93.49 E-value=3 Score=32.83 Aligned_cols=47 Identities=15% Similarity=-0.009 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
..-....+.+|+.++.+|+..|..+++.++..++.+...++....+.
T Consensus 58 ~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~ 104 (156)
T PRK05759 58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQ 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677788888888888888888866666666555554444433
No 71
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.44 E-value=3.8 Score=35.13 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
+++....|+.++. .|+.+++..+....+....++.. .....+..+|..+-..++.++.++..++..-..+..
T Consensus 62 ~e~~l~~a~~ea~----~i~~~A~~eA~~~~~~i~~~A~~----ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A 133 (246)
T TIGR03321 62 YEEKNEELDQQRE----VLLTKAKEEAQAERQRLLDEARE----EADEIREKWQEALRREQAALSDELRRRTGAEVFAIA 133 (246)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666 99998888888777776665543 233334455555555666666555555544443333
Q ss_pred HhhcCCceEEEeccccHHHHHHHHHHH
Q 028203 105 LRLKEPAVLLRCRKDDHHLVESVLESA 131 (212)
Q Consensus 105 ~~l~e~~v~v~~~~~D~~lv~~~l~~~ 131 (212)
.++.+..+ -......++..++.+.
T Consensus 134 ~kil~~~~---d~~~~~~lid~~i~~l 157 (246)
T TIGR03321 134 RKVLTDLA---DTDLEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHhc---ChHHHHHHHHHHHHHh
Confidence 34433322 1123345667766544
No 72
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=93.30 E-value=1.9 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~ 62 (212)
.++....|..+|+.....++..|..+|+ ..+.....+.+.+|.......
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~~~~~~ 60 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKEKEAEA 60 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777777 666666666666665554443
No 73
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.25 E-value=8 Score=36.97 Aligned_cols=29 Identities=28% Similarity=0.103 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~i 43 (212)
..++.+|+.+|+.|+..|+.+++.++..+
T Consensus 24 ~~~l~~Ae~eAe~i~keA~~eAke~~ke~ 52 (514)
T TIGR03319 24 EKKLGSAEELAKRIIEEAKKEAETLKKEA 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554333333
No 74
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=93.14 E-value=4 Score=34.23 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNS 103 (212)
Q Consensus 24 ka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~ 103 (212)
.+++...+|+.++. .|+..++.++...++....++.. .....+..++..+-..++.++.++..++.+--.+.
T Consensus 104 e~e~~L~~A~~eA~----~Ii~~A~~eAe~~~e~i~~~A~~----eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~i 175 (205)
T PRK06231 104 NAKQRHENALAQAK----EIIDQANYEALQLKSELEKEANR----QANLIIFQARQEIEKERRELKEQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666 88888888887777666665443 34455566666666667766666666555433344
Q ss_pred HHhhcCCceEEEeccccHHHHHHHHH
Q 028203 104 LLRLKEPAVLLRCRKDDHHLVESVLE 129 (212)
Q Consensus 104 l~~l~e~~v~v~~~~~D~~lv~~~l~ 129 (212)
..++....+ -...+..++.+++.
T Consensus 176 A~kiL~k~l---d~~~~~~lI~~~i~ 198 (205)
T PRK06231 176 AEELIKKKV---DREDDDKLVDEFIR 198 (205)
T ss_pred HHHHHHhhC---CHHHHHHHHHHHHH
Confidence 445544432 12223356665554
No 75
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=93.09 E-value=3.8 Score=32.77 Aligned_cols=94 Identities=9% Similarity=0.198 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
.++....|+.++. .|+.+++......+.....++.. .....+..++..+-..++.++..+...+..--....
T Consensus 65 ~e~~l~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a 136 (164)
T PRK14471 65 NERLLKEARAERD----AILKEAREIKEKMIADAKEEAQV----EGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIA 136 (164)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666 88888888777776666555443 233445566666777777777776666655444444
Q ss_pred HhhcCCceEEEec-cccHHHHHHHHH
Q 028203 105 LRLKEPAVLLRCR-KDDHHLVESVLE 129 (212)
Q Consensus 105 ~~l~e~~v~v~~~-~~D~~lv~~~l~ 129 (212)
.++.+..+ -. ..+..++..++.
T Consensus 137 ~kil~~~l---~~~~~~~~lid~~i~ 159 (164)
T PRK14471 137 EKVLRKEL---SNKEKQHKLVEKMLG 159 (164)
T ss_pred HHHHHHHc---CcHhHHHHHHHHHHH
Confidence 55544431 12 234556666665
No 76
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=93.06 E-value=4.6 Score=34.89 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028203 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA-- 84 (212)
Q Consensus 7 ~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~a-- 84 (212)
.++...|++....+|+...++|..+|+++++ ++..+....++.+..+-..++.. ++ .+..+..++ ++|..
T Consensus 70 ~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~~L~~--~v-~~la~~~A~-kiL~~~~ 141 (250)
T PRK14474 70 EQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFKALQQ--QT-GQQMVKIIR-AALADLA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHH-HHHHhhc
Confidence 3444445555555555555555666666666 77777777777666555554432 21 122222333 33322
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHhh--cCCceEEEe----ccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 028203 85 QDDLVSNMMEAASKEVL-------NSLLRL--KEPAVLLRC----RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH 151 (212)
Q Consensus 85 r~e~i~~v~~~a~~~L~-------q~l~~l--~e~~v~v~~----~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~ 151 (212)
-...-..+++...++|. +.|... .+..+.|+. .|.+...+...+.+. ..|. ++.+....+
T Consensus 142 d~~~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~~~------~~~~-~~~~~f~~~ 214 (250)
T PRK14474 142 NATLEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLHQT------HLIP-GTDIHFVTS 214 (250)
T ss_pred CHHHHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHHHH------hcCC-CCceeeecC
Confidence 11122233344444444 223211 122233332 233444554444420 2332 334433321
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.++|+-|.. |+-.+.|||++.|+.+-+.+
T Consensus 215 --------------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~~ 245 (250)
T PRK14474 215 --------------PELICGIELKT--EGYKIAWTLAEYLDALESQL 245 (250)
T ss_pred --------------cccccCeEEec--CCceEeccHHHHHHHHHHHH
Confidence 47899999998 67889999999997765443
No 77
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=93.03 E-value=2.8 Score=31.09 Aligned_cols=42 Identities=31% Similarity=0.323 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+-+|+..|.+|+.+|+.... .++.+++.++..+++.-..+.+
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e 50 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988 9999998888877666554444
No 78
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=92.97 E-value=0.31 Score=39.76 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=28.6
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 199 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~ 199 (212)
++.+||+++.. |.-++|+|+.++|+.+...++
T Consensus 146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 38999999998 789999999999999888774
No 79
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=92.87 E-value=4.2 Score=32.71 Aligned_cols=46 Identities=30% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~ 61 (212)
.-.+.-+.+|+.++.+|+..|..+++ .+.++...+.+.+..+....
T Consensus 61 ~~~~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~ 106 (161)
T COG0711 61 AEYEQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEA 106 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888 55555555555554444443
No 80
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=92.58 E-value=4.1 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~k 50 (212)
.-....+++|+.+|.+|+..|..+++..+..++.+....
T Consensus 50 ~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e 88 (147)
T TIGR01144 50 KKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREE 88 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777775555555544433
No 81
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=92.51 E-value=1.8 Score=32.80 Aligned_cols=46 Identities=28% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
.-.+..+.+|+..+.+|+..|.++++..+..++.+....+......
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~ 99 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQ 99 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777755555555554444444333
No 82
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=92.47 E-value=4.3 Score=31.88 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+..-...++++|+.+|..+...|..+++.+..++++++...++.+...-..+++
T Consensus 60 ~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~ 113 (141)
T PRK08476 60 IEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLA 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777777777766667777777777766665555544
No 83
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=92.47 E-value=5 Score=32.56 Aligned_cols=94 Identities=13% Similarity=0.229 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
.++....|+.++. .|+.+++......++....++.. .....+..++..+-..++.++.++...+.+--.+..
T Consensus 75 ~e~~l~~a~~ea~----~ii~~a~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a 146 (173)
T PRK13453 75 NKQKLKETQEEVQ----KILEDAKVQARQQQEQIIHEANV----RANGMIETAQSEINSQKERAIADINNQVSELSVLIA 146 (173)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666 88888888887777776665543 233345566667777777777777766665444444
Q ss_pred HhhcCCceEEEeccccHHHHHHHHH
Q 028203 105 LRLKEPAVLLRCRKDDHHLVESVLE 129 (212)
Q Consensus 105 ~~l~e~~v~v~~~~~D~~lv~~~l~ 129 (212)
.++....+ -.+.+..++..++.
T Consensus 147 ~kll~~~l---~~~~~~~lI~~~i~ 168 (173)
T PRK13453 147 SKVLRKEI---SEQDQKALVDKYLK 168 (173)
T ss_pred HHHHHhHc---CHHHHHHHHHHHHH
Confidence 45444332 12333445555554
No 84
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=92.46 E-value=5.1 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~ 55 (212)
+.-+++|+.++.+|+..|..+++.++..++.+...++....
T Consensus 85 e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~ 125 (184)
T PRK13455 85 ERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL 125 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888555555555554444333
No 85
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=92.12 E-value=5.7 Score=32.47 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
+++....|+.++. .|+..++..+...++....++.. .....++.++..+-..++.++..+..++..-..+..
T Consensus 81 ~e~~L~~A~~ea~----~ii~~A~~~ae~~~~~il~~A~~----ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A 152 (184)
T CHL00019 81 ARARLRQAELEAD----EIRVNGYSEIEREKENLINQAKE----DLERLENYKNETIRFEQQRAINQVRQQVFQLALQRA 152 (184)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666 88888888888777776665543 333445566656666666666666665555444444
Q ss_pred HhhcCCceEEEeccccHHHHHHHHHH
Q 028203 105 LRLKEPAVLLRCRKDDHHLVESVLES 130 (212)
Q Consensus 105 ~~l~e~~v~v~~~~~D~~lv~~~l~~ 130 (212)
.++.+..+ -...+..++..++.+
T Consensus 153 ~kil~~~l---d~~~~~~lid~~i~~ 175 (184)
T CHL00019 153 LGTLNSCL---NNELHLRTINANIGL 175 (184)
T ss_pred HHHHHhHc---CHHHHHHHHHHHHHH
Confidence 45444432 223344456666654
No 86
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=92.08 E-value=5.5 Score=32.21 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL 104 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l 104 (212)
+++.+..|+.++. .|+.+++..+....+....++.. .....+..++..+-..++..+.++...+..-..+..
T Consensus 76 ~~~~L~~a~~ea~----~ii~~a~~~a~~~~~~~~~~A~~----e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A 147 (174)
T PRK07352 76 AQQKLAQAQQEAE----RIRADAKARAEAIRAEIEKQAIE----DMARLKQTAAADLSAEQERVIAQLRREAAELAIAKA 147 (174)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666 88888888888777776665543 223334455555666666666666655555444333
Q ss_pred Hh
Q 028203 105 LR 106 (212)
Q Consensus 105 ~~ 106 (212)
.+
T Consensus 148 ~k 149 (174)
T PRK07352 148 ES 149 (174)
T ss_pred HH
Confidence 33
No 87
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=91.62 E-value=6.6 Score=32.53 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (212)
Q Consensus 21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L 100 (212)
+...|.+|+..|+.+++ +|+..+..+.+...+.-..++..+-.-...+.+. .....++.+...+.+.+..-+
T Consensus 28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~----~~~~~~e~l~~~l~~~~~~ll 99 (191)
T PF06188_consen 28 AQQQAREILEDARQQAE----QILQQAEEEAEALLEQAYEQAEAQFWQQANALLQ----EWQQQREQLLQQLEEQAEELL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999 9999999888876664333333221112223332 345667888888888888778
Q ss_pred HHHHHhhcCC
Q 028203 101 LNSLLRLKEP 110 (212)
Q Consensus 101 ~q~l~~l~e~ 110 (212)
.++|..+..+
T Consensus 100 ~~al~~lL~e 109 (191)
T PF06188_consen 100 SQALERLLDE 109 (191)
T ss_pred HHHHHHHHHc
Confidence 7888887653
No 88
>PRK15322 invasion protein OrgB; Provisional
Probab=91.50 E-value=7.7 Score=32.70 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+-...+.+.|+.+|.+|...|+.|++ .|-..+.. .-|...+.++.
T Consensus 12 ~~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~~---~GYq~Gl~qa~ 56 (210)
T PRK15322 12 FSAERLEQQARRRAKRILRQAEEEAE----TLRMYAYQ---EGYEQGMIDAL 56 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH
Confidence 34567899999999999999999999 88776654 45777666654
No 89
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=91.37 E-value=0.054 Score=43.62 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred EEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCC-----------------CCCCCCCCCcEEEEe
Q 028203 114 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH-----------------NAHGPSCSGGVVVAS 176 (212)
Q Consensus 114 v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~-----------------~~~~~~~~GGvvl~s 176 (212)
+.+...-..+++.++.+....|....|. ..++|-....|+++.... ...+++.+|||+|..
T Consensus 75 ~l~~~~r~~~l~~i~~~~~~~~~~~~~~--~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~ 152 (172)
T PF00213_consen 75 LLIDNNRLSLLPEILEEFEELVNEHNGI--VEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV 152 (172)
T ss_dssp HHCCTT-CCCHHHHHHHHHHHHHHHCCT--S-B-SSS-B----SSSTTTTTTCCCTTTT---------------------
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHcCe--EEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE
Confidence 3344555556777777666666655554 333333344555432111 123468999999998
Q ss_pred cCCcEEEcccHHHHHHHHHHh
Q 028203 177 RDGKIVCENTLDARLDVVFRK 197 (212)
Q Consensus 177 ~dG~I~~dNTleaRL~~~~e~ 197 (212)
|..++|.|+.++|+.+...
T Consensus 153 --~~~~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 153 --GDKVIDASVKSRLEQLKKE 171 (172)
T ss_dssp ------TTTTTTTTTTTT-TT
T ss_pred --CCEEEehhHHHHHHHHHhc
Confidence 8899999999999876554
No 90
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=91.09 E-value=2.9 Score=33.63 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~ 97 (212)
.++.+.+|+.+++ .|+.+++.......+....++.. .....+..++..+-.+|+..+.++-.++.
T Consensus 61 ~e~~L~~Ar~EA~----~Ii~~A~~~a~~~~~ea~~eA~~----ea~r~~~~A~~~Ie~Ek~~Al~elr~eva 125 (154)
T PRK06568 61 TNAQIKKLETLRS----QMIEESNEVTKKIIQEKTKEIEE----FLEHKKSDAIQLIQNQKSTASKELQDEFC 125 (154)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666 78887777666665555444432 12222334444566666666665555444
No 91
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=90.89 E-value=6.2 Score=30.50 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~ 98 (212)
..+++....|+.++. .|+.+++..+...++.....+.. .....+..++..+...++.++.++...+-+
T Consensus 60 ~~~e~~L~~a~~ea~----~i~~~a~~~a~~~~~~~~~~a~~----ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~ 127 (140)
T PRK07353 60 AQYEQQLASARKQAQ----AVIAEAEAEADKLAAEALAEAQA----EAQASKEKARREIEQQKQAALAQLEQQVDA 127 (140)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777 88888888888887777665543 233445566666677777776666665543
No 92
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=90.61 E-value=7.6 Score=31.80 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL 101 (212)
Q Consensus 22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~ 101 (212)
..+.++++.+|+.++. .|+.+.+.++.+.++....++.. .....+..++..+-..|+..+..+...+.+ |.
T Consensus 85 ~~eye~~L~~Ar~EA~----~ii~~A~~ea~~~~~~~~~~A~~----e~~~~~aea~~~I~~~k~~a~~~l~~~a~~-lA 155 (181)
T PRK13454 85 EKAYNKALADARAEAQ----RIVAETRAEIQAELDVAIAKADA----EIAAKAAESEKRIAEIRAGALESVEEVAKD-TA 155 (181)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445666777777777 99998888888887777666643 233445555556677777776665554433 33
Q ss_pred -HHHHhh
Q 028203 102 -NSLLRL 107 (212)
Q Consensus 102 -q~l~~l 107 (212)
..+.+|
T Consensus 156 ~~i~~kL 162 (181)
T PRK13454 156 EALVAAL 162 (181)
T ss_pred HHHHHHH
Confidence 334455
No 93
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.58 E-value=12 Score=35.88 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKL 41 (212)
Q Consensus 8 ~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~ 41 (212)
++.+++......+|++...+...+|++++...+.
T Consensus 32 ~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~ 65 (514)
T TIGR03319 32 ELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRA 65 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444334444444444444444444443333
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=90.52 E-value=17 Score=34.87 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028203 16 FIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 16 ~I~~EA~eka~eI~~~A~ee~~ 37 (212)
.+..+|+.+|+.|+.+|+.+++
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eAk 52 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEAE 52 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 95
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=90.35 E-value=7.7 Score=32.54 Aligned_cols=79 Identities=9% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q 102 (212)
...++.+.+|+.++. .|+.+.+.+...+++..+.+++.+ ....+..++..+-..|+..+.++-..+.+--.+
T Consensus 108 ~~ye~~L~~Ar~eA~----~Ii~~Ar~ea~~~~e~~~~~a~~e----a~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~ 179 (204)
T PRK09174 108 AAYEQELAQARAKAH----SIAQAAREAAKAKAEAERAAIEAS----LEKKLKEAEARIAAIKAKAMADVGSIAEETAAA 179 (204)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777 888888888888777776666532 223344555566666776666655544432223
Q ss_pred HHHhhcC
Q 028203 103 SLLRLKE 109 (212)
Q Consensus 103 ~l~~l~e 109 (212)
...++.+
T Consensus 180 I~~Kllg 186 (204)
T PRK09174 180 IVEQLIG 186 (204)
T ss_pred HHHHHhC
Confidence 3344543
No 96
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=90.01 E-value=8.4 Score=30.63 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a 96 (212)
+++++...+|+.++. .|+++++.++++.++.....+.. .....+..++..+-..++.++.++...+
T Consensus 77 ~e~e~~L~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~~~v 142 (156)
T CHL00118 77 KQYEQELSKARKEAQ----LEITQSQKEAKEIVENELKQAQK----YIDSLLNEATKQLEAQKEKALKSLEEQV 142 (156)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777776 88888887777776666555443 2223344444455555555555554443
No 97
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=89.68 E-value=12 Score=35.10 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~ 64 (212)
-+.++++|+.++.+|+.+|+++++..+..++.++..++....+....+++.
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ 108 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQL 108 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888888777777776666666555554444443
No 98
>PRK09098 type III secretion system protein HrpB; Validated
Probab=89.12 E-value=13 Score=31.73 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
........++|+++|+++++ .|+.+++.++.+-.+.
T Consensus 34 ~~~~~~~~~~ila~Ar~~A~----~Il~~A~~~A~~I~~~ 69 (233)
T PRK09098 34 LAAVHAERDAVLAAARARAE----RIVAEARAQAEAILEA 69 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45566778899999999999 9999888866644433
No 99
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=89.04 E-value=4.3 Score=32.97 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203 169 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 202 (212)
Q Consensus 169 ~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I 202 (212)
+|||+|.. |..++|.| ..|+.+...+..-|
T Consensus 143 IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~ 172 (176)
T PRK08474 143 YDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYI 172 (176)
T ss_pred CCCEEEEE--CCEEEEee--eeHHHHHHHHHHHH
Confidence 89999998 88999984 45666666555444
No 100
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=88.60 E-value=10 Score=29.73 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~ 62 (212)
++....+++...|+.++. .++++...++..++++...++
T Consensus 59 ~~~~e~e~~l~~Ar~eA~----~~~~~a~~~A~~ea~~~~~~A 97 (141)
T PRK08476 59 EIEHEIETILKNAREEAN----KIRQKAIAKAKEEAEKKIEAK 97 (141)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 445566777778888888 666666666666655555444
No 101
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=88.55 E-value=10 Score=29.74 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q 102 (212)
.+++....+|+.++. .|+.++...+...++....++.. .....+..++..+-..++.+..++...+.+--.+
T Consensus 59 ~e~~~~l~~a~~ea~----~i~~~a~~ea~~~~~~~~~~a~~----ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~ 130 (156)
T PRK05759 59 AKYEAQLAEARAEAA----EIIEQAKKRAAQIIEEAKAEAEA----EAARIKAQAQAEIEQERKRAREELRKQVADLAVA 130 (156)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666 88888888888887777666553 2223344555555566666666655555544443
Q ss_pred HHHhhcCC
Q 028203 103 SLLRLKEP 110 (212)
Q Consensus 103 ~l~~l~e~ 110 (212)
...++++.
T Consensus 131 ~a~k~l~~ 138 (156)
T PRK05759 131 GAEKILGR 138 (156)
T ss_pred HHHHHHHh
Confidence 33444433
No 102
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=87.89 E-value=1.7 Score=35.25 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=27.3
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.+||+++.. |.-.+|+|+.++|+.+...+
T Consensus 147 ~sligG~~i~~--~~~~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 147 PSLIGGVVVKI--GDKVLDASVRTQLRRLKETL 177 (181)
T ss_pred hhhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 37899999998 77999999999998887765
No 103
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=87.79 E-value=11 Score=29.26 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102 (212)
Q Consensus 23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q 102 (212)
..++.....|+.++. .|+..++......++....++.. .....+..++..+-..+..++..+...+..--..
T Consensus 50 ~e~~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~----e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~ 121 (147)
T TIGR01144 50 KKAQVILKEAKDEAQ----EIIENANKRGSEILEEAKAEARE----EREKIKAQARAEIEAEKEQAREELRKQVADLSVL 121 (147)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777 88888888888777776665543 2334455666566667777777666665554334
Q ss_pred HHHhhcCCceEEEeccccH-HHHHHHHH
Q 028203 103 SLLRLKEPAVLLRCRKDDH-HLVESVLE 129 (212)
Q Consensus 103 ~l~~l~e~~v~v~~~~~D~-~lv~~~l~ 129 (212)
...++.+..+ ++.|. .++..++.
T Consensus 122 ~a~kll~~~l----~~~~~~~lid~~i~ 145 (147)
T TIGR01144 122 GAEKIIERNI----DKQAQKDLIDKLVA 145 (147)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHh
Confidence 4444444332 33333 45565554
No 104
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=87.49 E-value=9 Score=28.92 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (212)
Q Consensus 22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~ 95 (212)
...+++....|+.++. .|+.+++..++..++....++... ....+..++-.+-..++.++.++...
T Consensus 53 ~~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~----~~~~~~~a~~~i~~e~~~a~~~l~~~ 118 (132)
T PF00430_consen 53 LAEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKE----AERIIEQAEAEIEQEKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888 888888888888877776665532 22223344445555555555554443
No 105
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=87.04 E-value=1.9 Score=35.33 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 199 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~ 199 (212)
++.+||+++.. |.-.+|+|+.++|+.....+.
T Consensus 149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 37899999998 789999999999988776553
No 106
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=86.96 E-value=13 Score=29.20 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (212)
Q Consensus 21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L 100 (212)
+-.+|.+|+..|+++++ .|+..+..+.+....+...+--.+-+-...+.+ ...+..++.+...+-..+..-+
T Consensus 11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~----~~~~~~~~~~~~~~e~~l~~l~ 82 (166)
T TIGR02499 11 ALAQAQAILAAARQRAE----AILADAEEEAEASRQLGYEQGLEQFWQEAAAQL----AEWQQEAEQLEASLEERLAELV 82 (166)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999 999998887766433322211111111111111 1344455555555544444433
Q ss_pred HHHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecC
Q 028203 101 LNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 150 (212)
Q Consensus 101 ~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~ 150 (212)
.+.+.++.... .|-.++..++.++...... ...+.|.|++
T Consensus 83 ~~~~~kil~~~-------~~~e~l~~lv~~al~~~~~---~~~v~I~v~P 122 (166)
T TIGR02499 83 LQALEQILGEY-------DEPERLVRLLRQLLRAVAN---QGRLTLRVHP 122 (166)
T ss_pred HHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCC---CCceEEEECH
Confidence 35566665542 4445667777766554433 1245666653
No 107
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=86.69 E-value=2 Score=34.59 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHh
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRK 197 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~ 197 (212)
++.+||+++.. |...+|+|+.++|+.+...
T Consensus 142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 38899999998 7899999999999887654
No 108
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=86.55 E-value=2 Score=34.66 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=27.2
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
++.+||+++.. |...+|+|+.++|+.....+
T Consensus 145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 38899999998 77999999999998887765
No 109
>PRK12704 phosphodiesterase; Provisional
Probab=86.46 E-value=31 Score=33.02 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 13 MVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 13 m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
-...|..+|..+|+++..++..+++
T Consensus 39 eAe~I~keA~~eAke~~ke~~leae 63 (520)
T PRK12704 39 EAKRILEEAKKEAEAIKKEALLEAK 63 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444444443
No 110
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=84.90 E-value=2.7 Score=35.25 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.7
Q ss_pred CCCCCcEEEEecCCcEEEcccHHHHHHHHHH
Q 028203 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFR 196 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e 196 (212)
+++.||+||+. |.-.+|-+..+|++.+-.
T Consensus 176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 48999999987 899999999999977655
No 111
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=83.65 E-value=24 Score=29.29 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (212)
Q Consensus 15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv 44 (212)
..-+..|+.+|..|+..|+.+++..+....
T Consensus 26 ~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~ 55 (201)
T PF12072_consen 26 RKKLEQAEKEAEQILEEAEREAEAIKKEAE 55 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666664333333
No 112
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=82.19 E-value=24 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 26 ~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
+.-+.+|+.++. .|+..++.+.+...+....+++
T Consensus 64 ~~~l~~Ar~~a~----~Ii~~A~~~a~~~~~e~~~~a~ 97 (161)
T COG0711 64 EQELEEAREQAS----EIIEQAKKEAEQIAEEIKAEAE 97 (161)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 6666655555555555444433
No 113
>PRK00106 hypothetical protein; Provisional
Probab=81.99 E-value=51 Score=31.84 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=5.2
Q ss_pred CCcEEEEec
Q 028203 169 SGGVVVASR 177 (212)
Q Consensus 169 ~GGvvl~s~ 177 (212)
.+-|+|+|.
T Consensus 265 p~~v~lS~f 273 (535)
T PRK00106 265 PEVVVLSGF 273 (535)
T ss_pred CCeEEEeCC
Confidence 355666663
No 114
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=81.42 E-value=30 Score=28.75 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
...-...|+.+|+.+|+.+..++.-++.
T Consensus 32 A~~~A~~i~~~A~~eAe~~~ke~~~eak 59 (201)
T PF12072_consen 32 AEKEAEQILEEAEREAEAIKKEAELEAK 59 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777666666666
No 115
>PRK12705 hypothetical protein; Provisional
Probab=78.67 E-value=64 Score=30.96 Aligned_cols=28 Identities=29% Similarity=0.178 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
+.+-...|+.+|+.+|+.+..++.-++.
T Consensus 31 ~~~~a~~~~~~a~~~a~~~~~~~~~~~~ 58 (508)
T PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAK 58 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666666666666655554443
No 116
>PRK12705 hypothetical protein; Provisional
Probab=76.97 E-value=72 Score=30.63 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVE 45 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~ 45 (212)
+.+++.+.+.....-+|++++.....+++++++..+..+-.
T Consensus 41 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~ 81 (508)
T PRK12705 41 EAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQR 81 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777788888888888777766655533
No 117
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=64.14 E-value=67 Score=24.98 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcCCceEEEecc
Q 028203 80 KVLQAQDDLVSNMMEAASKEVL-----NSLLRLKEPAVLLRCRK 118 (212)
Q Consensus 80 ~iL~ar~e~i~~v~~~a~~~L~-----q~l~~l~e~~v~v~~~~ 118 (212)
.+-..++.++..+...+..-+. .|+--+.+...++|.+|
T Consensus 102 ~l~~~~~~~~~~i~~~i~~~v~~~a~~~g~~~Vl~~~~vly~~~ 145 (158)
T PF03938_consen 102 QLQQEEQELLQPIQKKINKAVEEYAKENGYDLVLDKNAVLYADP 145 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEGGGEEEE-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCceEeeCC
Confidence 3444455566666665555444 33333444455777776
No 118
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=59.23 E-value=35 Score=32.68 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=10.5
Q ss_pred CCcEEEEecCCcEEE
Q 028203 169 SGGVVVASRDGKIVC 183 (212)
Q Consensus 169 ~GGvvl~s~dG~I~~ 183 (212)
-||||+.|+|-++++
T Consensus 751 ~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 751 NGGVIMVSHDERLIV 765 (807)
T ss_pred cCcEEEEecccceee
Confidence 378888887777653
No 119
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=57.96 E-value=1.6e+02 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (212)
Q Consensus 17 I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ 49 (212)
...||+..+++|+..|+-++. +|+.++..
T Consensus 264 ~i~eAeayan~iip~A~gea~----~ii~~AeA 292 (419)
T PRK10930 264 YIREAEAYTNEVQPRANGQAQ----RILEEARA 292 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344788888888888888877 77765543
No 120
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=56.87 E-value=55 Score=21.65 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (212)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~ 52 (212)
|+..+.+ -|++-++...+--+++-.||...-..||+ .|+......++
T Consensus 1 m~~~~~~-~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~----kiLk~r~~~lE 47 (56)
T PF08112_consen 1 MSEIDKS-TIDKYISILKSKLDEKKSEILSNLNMEYE----KILKQRRKELE 47 (56)
T ss_pred Ccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3443433 57777888888888888899888888888 88876665544
No 121
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=55.04 E-value=1.1e+02 Score=24.63 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
.++...+|+.++. .|..+..+++..+.....+.++
T Consensus 67 ye~~L~~Ar~eA~----~I~~e~~~~~~a~~~~~~~~~e 101 (155)
T PRK06569 67 YNEEIDKTNTEID----RLKKEKIDSLESEFLIKKKNLE 101 (155)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555 6666555555555555444443
No 122
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=54.36 E-value=1.1e+02 Score=24.37 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~k 50 (212)
+...+++.+...--++|++||++|+..|-......-.+++++...+
T Consensus 50 ~fk~elE~~~~~w~~dak~kAEkiL~aal~~ske~m~~~l~e~~~~ 95 (144)
T PF11657_consen 50 QFKEELEEIASRWGEDAKEKAEKILNAALAASKEAMNKILQESAQE 95 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777766555555555544433
No 123
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=51.95 E-value=41 Score=25.24 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.5
Q ss_pred CCcEEEEecCCcEE
Q 028203 169 SGGVVVASRDGKIV 182 (212)
Q Consensus 169 ~GGvvl~s~dG~I~ 182 (212)
.||+--.+.+|.=+
T Consensus 66 sG~~hF~y~~g~W~ 79 (103)
T PRK01379 66 SGPYHFFYEQGKWK 79 (103)
T ss_pred CCCcceecCCCeeE
Confidence 35555444444433
No 124
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=51.58 E-value=1.6e+02 Score=25.48 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCcEEEEec----CCcEEEcc---cHHHHHHHHHHhchHHHHH
Q 028203 169 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEIRK 204 (212)
Q Consensus 169 ~GGvvl~s~----dG~I~~dN---TleaRL~~~~e~~~p~I~~ 204 (212)
.+|+-|... .|+.+|.. .+|++++.-++.+...+..
T Consensus 234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L~e 276 (281)
T PRK06669 234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLE 276 (281)
T ss_pred CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHHHh
Confidence 466777664 47788763 3566665555555444433
No 125
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=47.92 E-value=1.2e+02 Score=23.07 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
.|+..|.+|...|+..-. +-+.+++..+..+++.
T Consensus 13 ~AE~eA~~IV~~AR~~r~----~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 13 QAEKRAAEKVSEARKRKT----KRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 478888888888876444 6666666666655554
No 126
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.02 E-value=6.4 Score=29.86 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 14 VRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 14 ~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
...+...|..+|+.|+..|+.+++
T Consensus 76 a~~~~~~A~~eA~~i~~~A~~~a~ 99 (131)
T PF05103_consen 76 ADEIKAEAEEEAEEIIEEAQKEAE 99 (131)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555
No 127
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=45.44 E-value=1.3e+02 Score=22.78 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 2 NDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 2 ~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
+|.++.+-++.+-..+..+|..+|..+..+=..|.+
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk 47 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344455555666666666666666666666555555
No 128
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.29 E-value=2.2e+02 Score=28.73 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 028203 40 KLQLVEAEKK 49 (212)
Q Consensus 40 k~~iv~~~~~ 49 (212)
+.++++++..
T Consensus 564 ~~~~~~~~~~ 573 (782)
T PRK00409 564 EDKLLEEAEK 573 (782)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=36.24 E-value=3.8e+02 Score=25.37 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISV-SAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~-~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~ 63 (212)
.|+.+|.- .+|+.+--+.++ +|+.||+ -..+|+....++++++|..+.-++.
T Consensus 354 eLESIVRi--KqAEA~MFQ~kAdEARrEAE-~LqrI~~aK~~k~EEEYas~~~kl~ 406 (446)
T PF07227_consen 354 ELESIVRI--KQAEAKMFQLKADEARREAE-GLQRIALAKSEKIEEEYASRYLKLR 406 (446)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 34444442 344444433333 3555655 3347888888899999988755543
No 130
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=35.17 E-value=56 Score=24.45 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=27.7
Q ss_pred hCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccH
Q 028203 139 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTL 187 (212)
Q Consensus 139 ~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTl 187 (212)
.|+ .+++.+|-..+=|+.. ..++....||+-+.+- +|.-||||
T Consensus 15 ~Gk-~V~v~iDls~Ct~~~~---~~~~s~t~Gg~~i~ay--rI~~D~tl 57 (100)
T PF06903_consen 15 AGK-NVTVVIDLSQCTPEGE---GTPPSKTRGGLRIDAY--RITPDGTL 57 (100)
T ss_pred cCC-eEEEEEEHHHCccCCC---CCCCcccCcccceeeE--EEeCCCeE
Confidence 566 6888888777766521 2234688899887763 55555554
No 131
>TIGR03299 LGT_TIGR03299 phage/plasmid-related protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
Probab=34.09 E-value=27 Score=31.32 Aligned_cols=20 Identities=45% Similarity=0.896 Sum_probs=16.0
Q ss_pred EEEEecCC-----------cEEEcccHHHHH
Q 028203 172 VVVASRDG-----------KIVCENTLDARL 191 (212)
Q Consensus 172 vvl~s~dG-----------~I~~dNTleaRL 191 (212)
+++.|+|| +++|+|||-.=+
T Consensus 135 lL~NSHDGssa~~~~~t~vRvVC~NTL~~a~ 165 (309)
T TIGR03299 135 LLATAHDGTLATTAQFTSVRVVCANTLAAAL 165 (309)
T ss_pred EEEeccCCccceEEecCcEEEEecCHHHHhc
Confidence 66788899 589999997655
No 132
>PRK10780 periplasmic chaperone; Provisional
Probab=32.32 E-value=2.6e+02 Score=22.21 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhhcCCceEEEeccccHHHHHHHH
Q 028203 84 AQDDLVSNMMEAASKEVL-----NSLLRLKEPAVLLRCRKDDHHLVESVL 128 (212)
Q Consensus 84 ar~e~i~~v~~~a~~~L~-----q~l~~l~e~~v~v~~~~~D~~lv~~~l 128 (212)
.+++....++..+.+-+. .|+--+.+...++|.+|. .++=..++
T Consensus 113 ~~~e~~~~i~~ki~~ai~~vak~~gy~~Vld~~~v~Y~~~~-~DIT~~Vi 161 (165)
T PRK10780 113 RSNEERNKILTRIQTAVKSVANKQGYDLVVDANAVAYNSSD-KDITADVL 161 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCceeeeCCC-CCchHHHH
Confidence 345555566665555554 343334444457777765 33333333
No 133
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=32.19 E-value=2.6e+02 Score=22.28 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ 49 (212)
+...+++.+.+.--++|++||+.|+..|-.-...-..+.+++...
T Consensus 50 ~FkeelE~iasrW~~dak~KAEkiLnaaLaaSKeam~~~m~e~~~ 94 (144)
T PRK13895 50 QFKEELESIASRWGDDAKEKAERILNAALAASKEAMAKGMQEGAK 94 (144)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445677777788888888888888886655554333355444433
No 134
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=32.16 E-value=3.1e+02 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (212)
Q Consensus 4 ~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ 49 (212)
.++++-++.|.. |+..+...+.+|+.+++ .++..+..
T Consensus 149 ~~v~~a~~~~~~-----a~q~~~~~~~~ae~~~~----~~~~~a~~ 185 (261)
T TIGR01933 149 EEVKEAFDDVII-----AREDEERYINEAEAYAN----EVVPKARG 185 (261)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 345555555544 23333455555554444 55544443
No 135
>PF09561 RE_HpaII: HpaII restriction endonuclease; InterPro: IPR019062 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes HpaII, which recognises the double-stranded sequence CCGG and cleaves after C-1.
Probab=31.72 E-value=39 Score=30.89 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=19.3
Q ss_pred CCCCcEEEEecCCcEEEcccHH
Q 028203 167 SCSGGVVVASRDGKIVCENTLD 188 (212)
Q Consensus 167 ~~~GGvvl~s~dG~I~~dNTle 188 (212)
+..||.+|...||.|+|..-++
T Consensus 290 ~a~gGyivV~~dGevlcYHiy~ 311 (355)
T PF09561_consen 290 DATGGYIVVKEDGEVLCYHIYN 311 (355)
T ss_pred cccceEEEEeCCCCEEEEEehh
Confidence 6889999999999999986554
No 136
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=29.55 E-value=4.3e+02 Score=24.52 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (212)
Q Consensus 6 ~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~k 50 (212)
+..+.+-+...++.+|..+++++..+--..|+.|++......+..
T Consensus 78 ~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~ 122 (424)
T KOG2880|consen 78 VKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKN 122 (424)
T ss_pred hchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 344566678888899999999999999999999999988766543
No 137
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=29.53 E-value=5.3e+02 Score=27.34 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEEEeccccHHHH
Q 028203 80 KVLQAQDDLVSNMMEAASKEVLNSLLRLK-EPAVLLRCRKDDHHLV 124 (212)
Q Consensus 80 ~iL~ar~e~i~~v~~~a~~~L~q~l~~l~-e~~v~v~~~~~D~~lv 124 (212)
+....-.+.+++++-+|-.=++++...+. .+.+.|+.++-|+.+.
T Consensus 93 ~~~~~~~~~Ld~iLpEAFAvvREaarR~lg~~~~~v~a~~~d~~l~ 138 (1112)
T PRK12901 93 EAYEILEKVLDEILPEAFAIVKETARRFAENEEIEVTATDFDRELA 138 (1112)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHhcCcceeecccchhhhhh
Confidence 33444455666666666665556666655 4567777777787765
No 138
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=27.81 E-value=35 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCCCCCCcEEEEecCCcEEEcccHHHH
Q 028203 164 HGPSCSGGVVVASRDGKIVCENTLDAR 190 (212)
Q Consensus 164 ~~~~~~GGvvl~s~dG~I~~dNTleaR 190 (212)
+.+.-.||+|......+++.||.||.-
T Consensus 50 ~~~~wvGGIv~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 50 PNIDWVGGIVTSGFYNTLIENNVFDGV 76 (198)
T ss_pred CCCceeeeEEeccccccEEEeeeeccc
Confidence 346889999999986779999999863
No 139
>PF10944 DUF2630: Protein of unknown function (DUF2630); InterPro: IPR020311 This entry contains proteins with no known function.
Probab=27.54 E-value=85 Score=22.60 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHhchHHHHHHhcCCCC
Q 028203 186 TLDARLDVVFRKKLPEIRKQLVSQVA 211 (212)
Q Consensus 186 TleaRL~~~~e~~~p~I~~~LF~~~~ 211 (212)
.|+..|++||+-+..-=.+.=||.+|
T Consensus 40 ~lE~~LDQCWDLLRqRRA~r~~G~dP 65 (81)
T PF10944_consen 40 QLEVELDQCWDLLRQRRARREAGEDP 65 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 68899999999998888888898887
No 140
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=27.34 E-value=3.9e+02 Score=22.79 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~ 57 (212)
-..-...|++.|...-..+..+|+.+++ +|..+...+++.+.-.
T Consensus 50 A~rkA~~I~q~A~~~~~~ll~qaqqqad----~L~~~~~~~~E~~~L~ 93 (224)
T PRK15354 50 AYRKAEKIIRDAYRYQREQKVEQQQELA----CLRKNTLEKMEVEWLE 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444567888888888888888888888 8888888877766443
No 141
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=25.83 E-value=71 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCeEEecCC-cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEE
Q 028203 143 PPEIIVDHH-IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVC 183 (212)
Q Consensus 143 ~~~i~vd~~-~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~ 183 (212)
+.+|.+|+. ..||+ +..|||=-.+ |.|.+
T Consensus 35 gIkV~Idkk~kilP~----------n~aagFd~~t--g~I~l 64 (132)
T PF15640_consen 35 GIKVKIDKKDKILPE----------NKAAGFDPET--GEIYL 64 (132)
T ss_pred CcEEEECCccCCCCc----------cccccCCCCC--CcEEE
Confidence 678989875 68876 5667776554 66655
No 142
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.53 E-value=50 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=10.7
Q ss_pred CCCCCcEEEEecCCcE
Q 028203 166 PSCSGGVVVASRDGKI 181 (212)
Q Consensus 166 ~~~~GGvvl~s~dG~I 181 (212)
....||||+++ |+.
T Consensus 34 ~~~~GGvV~eD--gR~ 47 (62)
T PF15513_consen 34 DRLTGGVVMED--GRH 47 (62)
T ss_pred CeEeccEEEeC--CCE
Confidence 47889999984 654
No 143
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=25.43 E-value=2.2e+02 Score=19.88 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=13.6
Q ss_pred ceEEEeccccHHHHHHHHH
Q 028203 111 AVLLRCRKDDHHLVESVLE 129 (212)
Q Consensus 111 ~v~v~~~~~D~~lv~~~l~ 129 (212)
.++|+|+|....-|...|.
T Consensus 7 s~vV~~~p~~~~~v~~~l~ 25 (79)
T PF03927_consen 7 SLVVHARPERLEEVAEALA 25 (79)
T ss_dssp EEEEEE-CCCHHHHHHHHC
T ss_pred EEEEEECchhHHHHHHHHH
Confidence 4689999998887766543
No 144
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=25.09 E-value=4.8e+02 Score=23.05 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE 47 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~ 47 (212)
++......+|+..|..|..+|+.++. +++.++
T Consensus 223 ~~a~~~r~ege~~a~~i~a~A~~e~~----~~~aeA 254 (317)
T TIGR01932 223 QIARMHRSQGEEKAEEILGKAEYEVR----KILSEA 254 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34445556666667777666666666 555544
No 145
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.86 E-value=3.7e+02 Score=21.66 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ---VEIRKKIEYSMQLNASRIKVLQAQD 86 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~---~~~~~ri~~s~~l~~~Rl~iL~ar~ 86 (212)
|++++..| ...++..-+|-..|+.+++ .+ ..+...+..+...-... ++...|.++......+| ..-+.-+
T Consensus 4 i~~ti~~i-e~sK~qIf~I~E~~R~E~~----~l-~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~-~f~~ysE 76 (159)
T PF05384_consen 4 IKKTIDTI-ESSKEQIFEIAEQARQEYE----RL-RKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR-NFDRYSE 76 (159)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCH
Confidence 45555554 5678889999999999998 33 33333344333333222 22233333333333344 3333345
Q ss_pred HHHHHHHHHHHH
Q 028203 87 DLVSNMMEAASK 98 (212)
Q Consensus 87 e~i~~v~~~a~~ 98 (212)
+-|.++|+.|.+
T Consensus 77 ~dik~AYe~A~~ 88 (159)
T PF05384_consen 77 EDIKEAYEEAHE 88 (159)
T ss_pred HHHHHHHHHHHH
Confidence 557777777765
No 146
>PF12860 PAS_7: PAS fold
Probab=23.23 E-value=68 Score=23.11 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=16.8
Q ss_pred CCCCcEEEEecCCcEEEccc
Q 028203 167 SCSGGVVVASRDGKIVCENT 186 (212)
Q Consensus 167 ~~~GGvvl~s~dG~I~~dNT 186 (212)
++.-||+|.+.+|++++-|.
T Consensus 3 ~l~~Gv~v~D~~~rl~~~N~ 22 (115)
T PF12860_consen 3 SLPQGVAVFDSDGRLVFWNQ 22 (115)
T ss_pred CcCceEEEEcCCCeEEeEcH
Confidence 46689999999999987764
No 147
>PF06067 DUF932: Domain of unknown function (DUF932); InterPro: IPR017686 Members of this uncharacterised protein are found in various Mycobacterium phage genomes, in Streptomyces coelicolor Plasmid SCP1 and in bacterial genomes near various markers that suggest lateral gene transfer. The function of this protein is unknown.
Probab=22.11 E-value=54 Score=27.71 Aligned_cols=12 Identities=58% Similarity=0.946 Sum_probs=9.4
Q ss_pred cEEEcccHHHHH
Q 028203 180 KIVCENTLDARL 191 (212)
Q Consensus 180 ~I~~dNTleaRL 191 (212)
+++|+|||-.-|
T Consensus 86 R~VC~Ntl~~A~ 97 (239)
T PF06067_consen 86 RVVCSNTLVAAL 97 (239)
T ss_pred EEEccCCceecc
Confidence 689999987643
No 148
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=21.62 E-value=4e+02 Score=22.01 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028203 16 FIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 16 ~I~~EA~eka~eI~~~A~ee~~ 37 (212)
.+.++-+..|..+.++++.+++
T Consensus 161 ~~~ae~~~~a~~~~ae~~~~a~ 182 (242)
T cd03405 161 RMRAERERIAAEFRAEGEEEAE 182 (242)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH
Confidence 3333433445555555555554
No 149
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.33 E-value=7.2e+02 Score=23.72 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 27 EISVSAEEEFNIEKLQLVEAEKKKIR 52 (212)
Q Consensus 27 eI~~~A~ee~~~ek~~iv~~~~~ki~ 52 (212)
+....-..+|+.++..+-+....+++
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444444444333
Done!