Query 028203
Match_columns 212
No_of_seqs 112 out of 481
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 2.4E-51 8.1E-56 348.1 28.1 203 1-212 8-228 (233)
2 3v6i_A V-type ATP synthase sub 100.0 3E-30 1E-34 211.7 24.6 164 12-208 2-187 (187)
3 2dm9_A V-type ATP synthase sub 100.0 1.7E-28 5.9E-33 200.4 9.8 172 6-208 11-198 (198)
4 3lg8_A A-type ATP synthase sub 99.9 1.1E-25 3.8E-30 169.3 -2.8 91 102-207 15-106 (106)
5 2kk7_A V-type ATP synthase sub 97.6 0.00027 9.2E-09 45.8 6.8 40 10-53 8-47 (52)
6 2dm9_A V-type ATP synthase sub 97.4 0.00013 4.4E-09 58.4 4.3 175 9-206 3-192 (198)
7 3v6i_A V-type ATP synthase sub 97.1 0.02 7E-07 45.8 14.6 96 6-101 7-115 (187)
8 1l2p_A ATP synthase B chain; a 94.8 0.4 1.4E-05 31.1 9.4 21 17-37 3-23 (61)
9 1l2p_A ATP synthase B chain; a 94.2 0.68 2.3E-05 30.0 9.6 52 9-60 6-57 (61)
10 2kk7_A V-type ATP synthase sub 93.4 0.058 2E-06 34.6 3.0 34 5-38 14-47 (52)
11 2k6i_A Uncharacterized protein 90.4 0.6 2E-05 30.3 5.1 29 20-52 23-51 (56)
12 4efa_E V-type proton ATPase su 89.0 8.2 0.00028 31.4 14.6 37 18-58 14-50 (233)
13 2wss_S ATP synthase subunit O, 84.4 0.047 1.6E-06 43.8 -3.6 32 165-198 155-186 (190)
14 2k6i_A Uncharacterized protein 82.4 1.8 6E-05 28.1 4.0 28 10-37 24-51 (56)
15 4efa_G V-type proton ATPase su 45.8 86 0.003 23.0 9.2 39 20-62 17-55 (119)
16 4efa_G V-type proton ATPase su 45.0 89 0.0031 22.9 12.2 46 11-60 19-64 (119)
17 3v6i_B V-type ATP synthase, su 43.8 88 0.003 22.5 12.7 31 18-52 22-52 (105)
18 1nwz_A PYP, photoactive yellow 26.5 46 0.0016 24.5 2.9 26 167-192 25-50 (125)
19 1mzu_A PPR; photoactive yellow 25.2 50 0.0017 24.5 2.9 26 167-192 30-55 (129)
20 3hfe_A Potassium voltage-gated 21.4 54 0.0019 18.4 1.8 16 184-199 5-20 (31)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=2.4e-51 Score=348.15 Aligned_cols=203 Identities=34% Similarity=0.522 Sum_probs=188.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (212)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~ 80 (212)
|+|+||++||++|++||++||++||+||..+|++||+++|.+++++++.++...|+++.++++.++++..|+..+++|+.
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 028203 81 VLQAQDDLVSNMMEAASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 142 (212)
Q Consensus 81 iL~ar~e~i~~v~~~a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 142 (212)
+|.+|+++|+++|+.|+++|. +++..+.+|.++|+|+|.|..+|+++++++..+|+..+|..
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999997 67778889999999999999999999999999999988864
Q ss_pred CCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 028203 143 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212 (212)
Q Consensus 143 ~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~~~~ 212 (212)
.....++...+|++ .+|.|||+|+|.||+|+|||||++||++++++++|+||+.|||.||+
T Consensus 168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 44333444567765 48999999999999999999999999999999999999999999985
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.98 E-value=3e-30 Score=211.66 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 028203 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI-----RKKIEYSMQLNASRIKVLQAQD 86 (212)
Q Consensus 12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~-----~~ri~~s~~l~~~Rl~iL~ar~ 86 (212)
++...|..+|+.+|++|+.+|+++++ .|+.+++.++...+....+.++. .+|+.+++.+ ..|..+|.+|+
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~l-e~r~~~L~ar~ 76 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGEL-LVATARTQARG 76 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45677888888888888888888888 88888888777776666554443 2455666766 55669999999
Q ss_pred HHHHHHHHHHHHHHH-----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203 87 DLVSNMMEAASKEVL-----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 149 (212)
Q Consensus 87 e~i~~v~~~a~~~L~-----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd 149 (212)
++|++||+.|+++|. +++..+.+|+++| |+|.|..+++.++++ | | +++..+
T Consensus 77 eli~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~ 144 (187)
T 3v6i_A 77 EVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE 144 (187)
T ss_dssp HHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence 999999999999998 5555677888866 999999999988764 2 2 333221
Q ss_pred CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203 150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208 (212)
Q Consensus 150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~ 208 (212)
.+|.|||+|++.||+|+|||||++||+.++++++|+|++.|||
T Consensus 145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999998
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.95 E-value=1.7e-28 Score=200.41 Aligned_cols=172 Identities=22% Similarity=0.326 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (212)
Q Consensus 6 ~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar 85 (212)
+-++-+.+.++|+++|+++|++|..+|+++|+.++..+++++..++. ...+...|...+..|..++.+|
T Consensus 11 il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~-----------~~~~~~~s~~~~~~r~~~l~~~ 79 (198)
T 2dm9_A 11 INKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAE-----------LEKQRIIANARLEVRRKRLAIQ 79 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777766644333 2333345555667777999999
Q ss_pred HHHHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203 86 DDLVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 149 (212)
Q Consensus 86 ~e~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd 149 (212)
+++++.+|..|.+.|. +++..+.++.+.|+|+|.|..+++.+++.+...|. ++.++++
T Consensus 80 ~ev~~~~~~~a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~i~ 153 (198)
T 2dm9_A 80 EEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELG 153 (198)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEEEC
Confidence 9999999999998887 44445667889999999999999999988777774 3567775
Q ss_pred CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203 150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208 (212)
Q Consensus 150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~ 208 (212)
+ +..+.|||+|.+.+|+|.|||||++||+.+++.+.|.|++.|||
T Consensus 154 ~--------------~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 154 E--------------TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp C--------------CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred C--------------CCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 3 14789999999999999999999999999999999999999997
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.1e-25 Score=169.34 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=84.0
Q ss_pred HHHHhhcCCceEEEeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCc
Q 028203 102 NSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGK 180 (212)
Q Consensus 102 q~l~~l~e~~v~v~~~~~D~~lv~~~-l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~ 180 (212)
|++..+.+|+++|+||++|.++|++. ++++.++|+.++|. ++++++++ +.+|.|||+|++.||+
T Consensus 15 q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~--------------~~~~~GGvil~s~dg~ 79 (106)
T 3lg8_A 15 DGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE--------------PVDIAGGCIIETADGL 79 (106)
T ss_dssp HHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC--------------CCSSSCBCBCSSCSCB
T ss_pred HHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC--------------CccccccEEEEeCCCC
Confidence 88999999999999999999999999 99999999999988 56666653 2589999999999999
Q ss_pred EEEcccHHHHHHHHHHhchHHHHHHhc
Q 028203 181 IVCENTLDARLDVVFRKKLPEIRKQLV 207 (212)
Q Consensus 181 I~~dNTleaRL~~~~e~~~p~I~~~LF 207 (212)
|+|||||++||++++++++|+|++.||
T Consensus 80 I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 80 KSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=97.57 E-value=0.00027 Score=45.80 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~ 53 (212)
|+++++.|+++|+.+|+.|+.+|+.+++ .|+.++..++++
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 7899999999999999999999999999 999988877654
No 6
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.38 E-value=0.00013 Score=58.38 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~ 88 (212)
-++++++.|+++|+.++++|+.+|+++++ .|+.++..++..++.+...+...+-.......+. .........
T Consensus 3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s----~~~~~~r~~ 74 (198)
T 2dm9_A 3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIA----NARLEVRRK 74 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 47889999999999999999999999999 9999999888877766666554322111111111 111112222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCc--CCCCCCCCCCCCCC
Q 028203 89 VSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI--YLPPGPGHHNAHGP 166 (212)
Q Consensus 89 i~~v~~~a~~~L~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~--~L~~~~~~~~~~~~ 166 (212)
+..+-.+....+.....+.... + +.+....++..++.++...+ +...+.|.+++.. .+.. .-.
T Consensus 75 ~l~~~~ev~~~~~~~a~~~l~~-l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~~D~~~v~~-------~~~ 139 (198)
T 2dm9_A 75 RLAIQEEIISSVLEEVKRRLET-M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNEKTLGLIAS-------RIE 139 (198)
T ss_dssp ------CHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCHHHHHHHHH-------THH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECHhHHHHHHH-------HHH
Confidence 2222222222222222221111 1 23334567777777655433 2224555554221 0000 000
Q ss_pred CC-----CCcEEEE---ecCCcEEEcc-----cHHHHHHHHHHhchHHHHHHh
Q 028203 167 SC-----SGGVVVA---SRDGKIVCEN-----TLDARLDVVFRKKLPEIRKQL 206 (212)
Q Consensus 167 ~~-----~GGvvl~---s~dG~I~~dN-----TleaRL~~~~e~~~p~I~~~L 206 (212)
.. .+|+.+. ...|++++.. .++.-|+..++.+...+...+
T Consensus 140 ~~~~~~~~~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i 192 (198)
T 2dm9_A 140 EIKSELGDVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTI 192 (198)
T ss_dssp HHHHHCTTCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHH
T ss_pred HHHHHhcCceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHH
Confidence 00 2466664 2357788744 689999999999888877654
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.11 E-value=0.02 Score=45.75 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 028203 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI--------EYSMQLNAS 77 (212)
Q Consensus 6 ~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri--------~~s~~l~~~ 77 (212)
.+.+-+.-.+.|+.+|+.+|++|+.+|+++++..+..+..+...++...+++....+..+.|. ..+...+.+
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a 86 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV 86 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677899999999999999999999997777777666666666655554433332111 111222233
Q ss_pred HHHH--H-H--HHHHHHHHHHHHHHHHHH
Q 028203 78 RIKV--L-Q--AQDDLVSNMMEAASKEVL 101 (212)
Q Consensus 78 Rl~i--L-~--ar~e~i~~v~~~a~~~L~ 101 (212)
+..+ + . ...++|..++.++...|.
T Consensus 87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~ 115 (187)
T 3v6i_A 87 REALEALPQKPEWPEVVRKLALEALEALP 115 (187)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHHHHcC
Confidence 3111 1 1 256788888888877765
No 8
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.76 E-value=0.4 Score=31.14 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028203 17 IRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 17 I~~EA~eka~eI~~~A~ee~~ 37 (212)
.+.+|+.++.+|+..|..+++
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~ 23 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRS 23 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.19 E-value=0.68 Score=29.97 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (212)
Q Consensus 9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k 60 (212)
+...-...|+.+|+..+..|...+..++..+-.+|+..+...|..+..+-+.
T Consensus 6 ~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~ 57 (61)
T 1l2p_A 6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRARE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777779999998888877655443
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.43 E-value=0.058 Score=34.60 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNI 38 (212)
Q Consensus 5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ 38 (212)
++..+-+.-...|+.+|+.+|++|+.+|+.+++.
T Consensus 14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788999999999999999888873
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=90.40 E-value=0.6 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~ 52 (212)
+|+.+|.+|+.+|.++++ .|+..+..+++
T Consensus 23 eAE~~A~~iVeeA~~ea~----~ii~eAreeAk 51 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE----QIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 566667777777777666 66665555443
No 12
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=88.96 E-value=8.2 Score=31.38 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (212)
Q Consensus 18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k 58 (212)
..+.+.-..-|..+|++.++ .|..++..+.+.+..+.
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~ 50 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNI 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33444445667788888888 88887776665444443
No 13
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=84.41 E-value=0.047 Score=43.82 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203 165 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 198 (212)
Q Consensus 165 ~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~ 198 (212)
+++.+|||+|.- |.-++|.|+.+||+.+...+
T Consensus 155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 358999999998 88999999999998776554
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=82.39 E-value=1.8 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (212)
Q Consensus 10 i~~m~~~I~~EA~eka~eI~~~A~ee~~ 37 (212)
-++-...|..+|++++++|+..|++++.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999999988
No 15
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=45.78 E-value=86 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (212)
Q Consensus 20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~ 62 (212)
+|+.+|.+|..+|+..-. +-+.+++..+..+++.=..+.
T Consensus 17 ~AEk~A~~iV~~ARk~k~----~rLKqAK~EA~~EIe~yR~qk 55 (119)
T 4efa_G 17 QAEKEAHEIVSKARKYRQ----DKLKQAKTDAAKEIDSYKIQK 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888877655 777777777666655544333
No 16
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=44.95 E-value=89 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (212)
Q Consensus 11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k 60 (212)
++-...|.++|+..-..-+..|.++|. .=|+.-+.+-+.+|.....
T Consensus 19 Ek~A~~iV~~ARk~k~~rLKqAK~EA~----~EIe~yR~qkE~eFk~~e~ 64 (119)
T 4efa_G 19 EKEAHEIVSKARKYRQDKLKQAKTDAA----KEIDSYKIQKDKELKEFEQ 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456677999999998899999999999 6677777766777766543
No 17
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=43.80 E-value=88 Score=22.49 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (212)
Q Consensus 18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~ 52 (212)
+.+|+..|...+..|+.++. .|+.++..+..
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~----ril~eAe~~a~ 52 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAK----ALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45666667777777777777 77766655444
No 18
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=26.46 E-value=46 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCCCcEEEEecCCcEEEcccHHHHHH
Q 028203 167 SCSGGVVVASRDGKIVCENTLDARLD 192 (212)
Q Consensus 167 ~~~GGvvl~s~dG~I~~dNTleaRL~ 192 (212)
++.=|+++.+.+|+|..-|.+.+++.
T Consensus 25 ~l~~Gii~lD~~g~I~~~N~~~e~~s 50 (125)
T 1nwz_A 25 GLAFGAIQLDGDGNILQYNAAEGDIT 50 (125)
T ss_dssp TCSSEEEEEETTCBEEEECHHHHHHH
T ss_pred ccCceEEEECCCCEEEEEHHHHHHHh
Confidence 34459999999999999999998873
No 19
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=25.21 E-value=50 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCCCcEEEEecCCcEEEcccHHHHHH
Q 028203 167 SCSGGVVVASRDGKIVCENTLDARLD 192 (212)
Q Consensus 167 ~~~GGvvl~s~dG~I~~dNTleaRL~ 192 (212)
++.=|||+.+.+|+|..-|.+.+++.
T Consensus 30 ~l~~GiivlD~dg~I~~~N~~~e~is 55 (129)
T 1mzu_A 30 ALPVGAIQVDGSGVIHRYNRTESRLS 55 (129)
T ss_dssp GCSSEEEEEETTCBEEEECHHHHHHH
T ss_pred ccCceEEEECCCCeEEEEHHHHHHHh
Confidence 34459999999999999999998874
No 20
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=21.37 E-value=54 Score=18.35 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=13.3
Q ss_pred cccHHHHHHHHHHhch
Q 028203 184 ENTLDARLDVVFRKKL 199 (212)
Q Consensus 184 dNTleaRL~~~~e~~~ 199 (212)
.||+-+||.++-+.+.
T Consensus 5 ~nTIGaRLnRvE~k~t 20 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVT 20 (31)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 6899999999887654
Done!