BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028207
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWW|A Chain A, Crystal Structure Of The 'restriction Triad' Mutant Of Hla
B Beta-2-Microglobulin And Ebv Peptide
pdb|3KXF|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|C Chain C, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 276
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R ++I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTAIFKANTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP ER + I K Q S S+R+A+ Y + + G +Y D+
Sbjct: 55 EGPEYWERETQIAKGHEQ-SFRGSLRTAQSY-YNQSKGGSHTLQWMYGCDM--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLE 138
G + R+LRG+ G D++ + ED+ + +Q+ W + D LE
Sbjct: 104 --GSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLE 161
Query: 139 LTCKALLQYIYFLGLHALF 157
TC L+ LG L
Sbjct: 162 GTCMQSLRRYLELGKETLL 180
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 101 GLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF 134
G +P+ E +AEQL++ Q WH + L++F
Sbjct: 203 GSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEF 236
>pdb|3VFM|A Chain A, Crystal Structure Of Hla B3508 Lpep155a, Hla Mutant Ala155
Length = 276
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1CG9|A Chain A, Complex Recognition Of The Supertypic Bw6-Determinant On
Hla-B And-C Molecules By The Monoclonal Antibody Sfr8-B6
Length = 277
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XH3|A Chain A, Conformational Restraints And Flexibility Of 14-Meric
Peptides In Complex With Hla-B3501
pdb|1ZHK|A Chain A, Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|1ZSD|A Chain A, Crystal Structure Of Hla-B3501 Presenting An 11-Mer Ebv
Antigen Eplpqgqltay
pdb|2AXG|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2H6P|A Chain A, Crystal Structure Of Hla-B3501 Presenting The Human
Cytochrome P450 Derived Peptide, Kpivvlhgy
pdb|2CIK|A Chain A, Insights Into Crossreactivity In Human Allorecognition:
The Structure Of Hla-B35011 Presenting An Epitope
Derived From Cytochrome P450.
pdb|2FYY|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NX5|A Chain A, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|F Chain F, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|K Chain K, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|Q Chain Q, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|3MV7|A Chain A, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|A Chain A, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|A Chain A, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
pdb|3LKN|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1918 Strain
pdb|3LKO|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1934 Strain
pdb|3LKP|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1972 Strain
pdb|3LKQ|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1977 Strain
pdb|3LKR|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 2009 H1n1 Swine Origin Strain
pdb|3LKS|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1980 Strain
Length = 276
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFO|A Chain A, Crystal Structure Of Hla B3508 Lpep157a, Hla Mutant Ala157
Length = 276
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFN|A Chain A, Crystal Structure Of Hla B3508lpep151a, Hla Mutant Ala151
Length = 276
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1ZHL|A Chain A, Crystal Structure Of Hla-B3508 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|2AK4|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|F Chain F, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|Q Chain Q, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AXF|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2FZ3|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NW3|A Chain A, Crystal Structure Of Hla-B3508 Presenting Ebv Peptide
Eplpqgqltay At 1.7a
pdb|3BW9|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 12-
Mer Peptide From The Pp65 Protein
pdb|3BWA|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 8-
Mer Peptide From The Pp65 Protein
pdb|3VFS|A Chain A, Crystal Structure Of Hla B3508lpep-P5ala , Peptide Mutant
P5-Ala
pdb|3VFT|A Chain A, Crystal Structure Of Hla B3508lpep-P6ala, Peptide Mutant
P6-Ala
pdb|3VFU|A Chain A, Crystal Structure Of Hla B3508 Lpep-P7ala, Peptide Mutant
P7-Ala
pdb|3VFV|A Chain A, Crystal Structure Of Hla B3508 Lpep-P9ala, Peptide Mutant
P9-Ala
pdb|3VFW|A Chain A, Crystal Structure Of Hla B3508 Lpep-P10ala, Peptide Mutant
P10-Ala
pdb|3VFR|A Chain A, Crystal Structure Of Hla B3508lpep-P4ala, Peptide Mutant
P4-Ala
Length = 276
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A9B|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9B|D Chain D, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9E|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
Length = 277
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1N|A Chain A, Mhc Class I Molecule B3501 Complexed With Peptide Vplrpmty
From The Nef Protein (75-82) Of Hiv1
Length = 276
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFP|A Chain A, Crystal Structure Of Hla B3508 Lpep158g, Hla Mutant Gly158
Length = 276
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XR8|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|1XR9|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|3C9N|A Chain A, Crystal Structure Of A Sars Corona Virus Derived Peptide
Bound To The Human Major Histocompatibility Complex
Class I Molecule Hla-B1501
Length = 276
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3LN5|A Chain A, Crystal Structure Of Hla-B4104 In Complex With A 11mer
Self-Peptide Derived From S-Methyl-5-Thioadenosine
Phosphorylase
Length = 274
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y DL
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQSMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED+ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRK 146
>pdb|1A1O|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide Ls6
(Kpivqydnf) From The Malaria Parasite P. Falciparum
Length = 276
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1M|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide
Tpydinqml From Gag Protein Of Hiv2
Length = 278
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3IL2|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
pdb|3IL2|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
Length = 207
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGXGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|3IKV|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
pdb|3IKV|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
Length = 207
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGMGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 80 PVYWNGDNRRVLRGHWFARKGGLDWLP 106
P W DN RG WF GG++ P
Sbjct: 88 PTVWRVDNYDPSRGKWFITTGGVEGNP 114
>pdb|3FHN|A Chain A, Structure Of Tip20p
pdb|3FHN|B Chain B, Structure Of Tip20p
pdb|3FHN|C Chain C, Structure Of Tip20p
pdb|3FHN|D Chain D, Structure Of Tip20p
Length = 706
Score = 26.9 bits (58), Expect = 7.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 106 PIREDVAEQLEIAYRSQVWHRRTFNLLDFL-QLELTCKALLQYIYFLGLHALFTGEDDTW 164
PIR+ V RS ++ L+ + Q+ T K LL ++ GL + D+ W
Sbjct: 315 PIRDKV--------RSTLFQNDLKTLIVLISQILATDKNLLNSFHYHGLGLVSLISDEVW 366
Query: 165 EAWLNVD 171
E W+N +
Sbjct: 367 EKWINYE 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,162,365
Number of Sequences: 62578
Number of extensions: 236516
Number of successful extensions: 569
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 33
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)