Query 028207
Match_columns 212
No_of_seqs 146 out of 218
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308 Phosphatidic acid-pref 100.0 2.1E-30 4.5E-35 254.1 6.2 203 1-211 88-299 (741)
2 PF02825 WWE: WWE domain; Int 94.6 0.045 9.7E-07 38.7 3.4 29 93-121 8-36 (72)
3 smart00678 WWE Domain in Delte 93.1 0.14 3E-06 36.6 3.7 28 94-121 2-29 (73)
4 PF02825 WWE: WWE domain; Int 41.3 50 0.0011 22.9 3.9 34 58-92 39-72 (72)
5 COG3816 Uncharacterized protei 30.7 26 0.00057 30.3 1.2 24 87-115 46-71 (205)
6 KOG2308 Phosphatidic acid-pref 30.2 13 0.00028 38.3 -0.8 57 61-120 74-142 (741)
7 PF08043 Xin: Xin repeat; Int 29.4 43 0.00094 18.2 1.5 15 89-108 2-16 (16)
8 PF08635 ox_reductase_C: Putat 22.3 1.1E+02 0.0024 25.6 3.3 16 14-31 37-52 (142)
9 COG5111 RPC34 DNA-directed RNA 19.6 94 0.002 28.4 2.6 30 71-100 137-166 (301)
10 PF00195 Chal_sti_synt_N: Chal 16.8 67 0.0014 28.5 1.0 14 197-210 116-129 (226)
No 1
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-30 Score=254.08 Aligned_cols=203 Identities=31% Similarity=0.462 Sum_probs=157.2
Q ss_pred ChhhHhhhHHHHHHHHHHHHHHhcCCCCCccCCCcccccccccccccccchhhhccC---cceeEeecCceeEEeccCee
Q 028207 1 MVEHLLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEE---ERVGVPVKGGLYEVDLVRRH 77 (212)
Q Consensus 1 ~~~~~~~~~~~~~~~~w~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~V~V~gglydVdl~~r~ 77 (212)
+.++|+.|..+....||++|+.|..+..-.-+.-.+.... . -+.++++.|++..+ +...|+|+||+|+||+.+|+
T Consensus 88 ~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~~~~-p-~~~~ds~~le~~~~~~~e~~~v~v~gG~Y~Vd~~~r~ 165 (741)
T KOG2308|consen 88 LHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKSTWT-P-SEHSDSDDLEEGENDDQESPPVVVEGGLYEVDKENRK 165 (741)
T ss_pred cccccccccccCcccccccccCCCCChhhhcccccccccc-c-cccccccccccccccCCccCceeecCCeeeeeeeccc
Confidence 3578999999999999999999888876654322222220 0 12247888887665 88899999999999999999
Q ss_pred EeeeecCCCCcceEEeEeeeeCCCCceeeCCHHHHHHHHHHHhcccccccccccchhhhhh-hhhhhhhcccccceeeEe
Q 028207 78 CFPVYWNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLE-LTCKALLQYIYFLGLHAL 156 (212)
Q Consensus 78 ~~PvYW~g~~~eVrRgtWF~~~~~~~~~P~~e~la~~LE~~y~~~~W~~~~~~p~~e~a~~-v~~~~~l~g~~~~~~h~L 156 (212)
|.||||+|+.++||||+||+++ +++|+||+|++|++||.+|++.+|.+...+.-.-.+++ + .++| ...+.|++
T Consensus 166 ~~pvYW~~d~~ev~Rg~WF~~~-~~~~~P~~e~~s~qlE~~yl~~~~~~~~~~~~~~~~~s~~----s~~g-~~v~~~f~ 239 (741)
T KOG2308|consen 166 CSPVYWSGDEKEVRRGTWFFDG-GSTLQPLEEELSEQLEAEYLNSFRTQELPENFTLFTASYI----SIHG-KPVVVSFK 239 (741)
T ss_pred ccCCCCCCCcccceeeeeeecC-CCceeeccchhHHHHHHHHHHHhhhcccccccccccceee----eecC-CceEEEee
Confidence 9999999999999999999986 88999999999999999999988765554443322222 2 5888 77899999
Q ss_pred eecCCCCceeeeeecCCCceeEEee---cCCceEEEeCccC--CCCCCCCcccEEEEEEe
Q 028207 157 FTGEDDTWEAWLNVDASGFSSIISF---SGNGIKLRRGYSQ--TISANPSKVLVLLLLVI 211 (212)
Q Consensus 157 f~~~~d~~~Awl~~D~~g~ss~L~~---~~~g~kL~RGY~e--~~ed~p~~IdHLVFVV~ 211 (212)
++++++.|+||.+.+....+...++ ...++.|.|||.+ .+.++|.+|+||||||-
T Consensus 240 ~~~~~~~w~a~~~~~~~~r~~~~g~~~~~~~~~~l~~~~~ee~~~~~k~~~v~hllf~vh 299 (741)
T KOG2308|consen 240 YTGNDDTWGAVDDVSLKSRSGEAGLERPVVVGRGLRRFLEEENDLASKPVPVDHLLFVVH 299 (741)
T ss_pred ecCCCccccccccccccccccccccccccccccccchhhhhhccccCCCccchheeeeee
Confidence 9999997777765443322222222 2467788888877 88999999999999995
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=94.56 E-value=0.045 Score=38.71 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.5
Q ss_pred eEeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 93 GHWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 93 gtWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
..|++.++++.|.||+++.+..||++|++
T Consensus 8 ~~W~w~~~~~~W~~Y~~~~~~~IE~a~~~ 36 (72)
T PF02825_consen 8 YVWQWEDDDGGWHPYDPEVSEIIEEAYQN 36 (72)
T ss_dssp EEEEEESETSSEEE--HHHHHHHHHHHHT
T ss_pred EEEEEECCCCcEEeCCcHHHHHHHHHHHc
Confidence 46888755779999999999999999987
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=93.06 E-value=0.14 Score=36.63 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.9
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 94 HWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 94 tWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
.|++.++.+.|.||+...+..||++|.+
T Consensus 2 ~W~w~~~~g~W~~Y~~~~~~~IE~ay~~ 29 (73)
T smart00678 2 VWEYEGRNGKWWPYDPRVSEDIEEAYAA 29 (73)
T ss_pred EEEEECCCCCeeeCChHHHHHHHHHHHc
Confidence 5888866668999999999999999986
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=41.27 E-value=50 Score=22.89 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred cceeEeecCceeEEeccCeeEeeeecCCCCcceEE
Q 028207 58 ERVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (212)
Q Consensus 58 ~~~~V~V~gglydVdl~~r~~~PvYW~g~~~eVrR 92 (212)
....|.+.+..|.||+.+|.-...-.. ...+|+|
T Consensus 39 ~~~~~~~~~~~Y~IDF~~M~Q~n~~t~-~~R~IrR 72 (72)
T PF02825_consen 39 KSCQLSIGGRPYTIDFKSMTQINKDTG-TTRPIRR 72 (72)
T ss_dssp SEEEEEETTEEEEEETTTTEEEESSSS--EEEEEE
T ss_pred cEEEEEeCCcEEEEEChhcEEEeCCCC-CEeecCC
Confidence 344566779999999999987776554 4455555
No 5
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.75 E-value=26 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=16.6
Q ss_pred CcceEE-eEeeeeCCCCceeeCC-HHHHHHH
Q 028207 87 NRRVLR-GHWFARKGGLDWLPIR-EDVAEQL 115 (212)
Q Consensus 87 ~~eVrR-gtWF~~~~~~~~~P~~-e~la~~L 115 (212)
.++|++ |||||.+ .|+. +.|....
T Consensus 46 DmeIr~DGtWFylG-----TPIGR~plVrLF 71 (205)
T COG3816 46 DMEIRADGTWFYLG-----TPIGRKPLVRLF 71 (205)
T ss_pred eeEEecCceEEEec-----CccchHHHHHHH
Confidence 478887 9999985 5886 4444433
No 6
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=13 Score=38.33 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=48.7
Q ss_pred eEeec-CceeEEeccCeeEeeeecCCCCcceE-----------EeEeeeeCCCCceeeCCHHHHHHHHHHHh
Q 028207 61 GVPVK-GGLYEVDLVRRHCFPVYWNGDNRRVL-----------RGHWFARKGGLDWLPIREDVAEQLEIAYR 120 (212)
Q Consensus 61 ~V~V~-gglydVdl~~r~~~PvYW~g~~~eVr-----------RgtWF~~~~~~~~~P~~e~la~~LE~~y~ 120 (212)
...|. +++.+|+.......|-+|..+.+.|| |++|+++. .|.|.+-..+..||+.|.
T Consensus 74 p~e~~~~~l~~~~~~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~---~~~p~~~~ds~~le~~~~ 142 (741)
T KOG2308|consen 74 PEEVFRDVLSEVDTLHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKS---TWTPSEHSDSDDLEEGEN 142 (741)
T ss_pred ccccchhhcccccccccccccccccCcccccccccCCCCChhhhccccccc---cccccccccccccccccc
Confidence 35567 89999999999999999999988887 66677653 789999999999999987
No 7
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=29.44 E-value=43 Score=18.17 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.8
Q ss_pred ceEEeEeeeeCCCCceeeCC
Q 028207 89 RVLRGHWFARKGGLDWLPIR 108 (212)
Q Consensus 89 eVrRgtWF~~~~~~~~~P~~ 108 (212)
.|+.++|.+.. +|++
T Consensus 2 DV~~~~wlFEt-----qplD 16 (16)
T PF08043_consen 2 DVKTTRWLFET-----QPLD 16 (16)
T ss_pred CcceeEEEeec-----ccCC
Confidence 58899999975 6764
No 8
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=22.29 E-value=1.1e+02 Score=25.58 Aligned_cols=16 Identities=31% Similarity=0.763 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCCCCcc
Q 028207 14 SNWWKEYAECSEGPRERA 31 (212)
Q Consensus 14 ~~~w~~~~~~~~g~~~~~ 31 (212)
..||.. ..|+||.--+
T Consensus 37 ~~WW~k--s~sgGpiVEQ 52 (142)
T PF08635_consen 37 PFWWNK--SKSGGPIVEQ 52 (142)
T ss_pred chhhhh--cccCCCeeee
Confidence 368865 8899987665
No 9
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=19.56 E-value=94 Score=28.43 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=25.6
Q ss_pred EeccCeeEeeeecCCCCcceEEeEeeeeCC
Q 028207 71 VDLVRRHCFPVYWNGDNRRVLRGHWFARKG 100 (212)
Q Consensus 71 Vdl~~r~~~PvYW~g~~~eVrRgtWF~~~~ 100 (212)
|.-.+|++|-.|=--|..++.-|+||..+.
T Consensus 137 vKnptRKiYmLYdlvPS~eiTGGpWFtD~e 166 (301)
T COG5111 137 VKNPTRKIYMLYDLVPSEEITGGPWFTDNE 166 (301)
T ss_pred hcCCCceEEEEecccccccccCCCccccCc
Confidence 455678999999889999999999999754
No 10
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=16.78 E-value=67 Score=28.45 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.8
Q ss_pred CCCCCcccEEEEEE
Q 028207 197 SANPSKVLVLLLLV 210 (212)
Q Consensus 197 ed~p~~IdHLVFVV 210 (212)
...|.+|+|||||-
T Consensus 116 g~~~~dIthlv~vs 129 (226)
T PF00195_consen 116 GLDPSDITHLVTVS 129 (226)
T ss_dssp TS-GGGECEEEEEE
T ss_pred CCCCcccceEEEEe
Confidence 45678999999984
Done!