Query 028207
Match_columns 212
No_of_seqs 146 out of 218
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 12:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a90_A Deltex protein; WWE dom 91.2 0.42 1.4E-05 41.5 6.5 54 67-121 68-142 (240)
2 3v3l_A E3 ubiquitin-protein li 89.2 0.34 1.1E-05 35.4 3.6 27 94-121 6-32 (85)
3 1ujr_A Hypothetical protein AK 84.4 0.75 2.6E-05 35.3 3.4 27 94-121 31-57 (110)
4 2dk6_A PARP11 protein; structu 78.7 0.92 3.1E-05 34.2 2.0 28 94-121 21-55 (102)
5 2a90_A Deltex protein; WWE dom 69.0 3.7 0.00013 35.6 3.6 28 93-121 26-53 (240)
6 1x4r_A PARP14 protein; WWE dom 47.7 14 0.00047 27.9 3.1 27 94-121 28-54 (99)
7 1x4r_A PARP14 protein; WWE dom 38.8 35 0.0012 25.7 4.1 34 57-92 56-89 (99)
8 2vof_B BCL-2-binding component 33.4 18 0.00062 21.0 1.3 9 15-23 3-11 (26)
9 2yj1_B Alpha-beta-PUMA BH3 fol 28.7 15 0.0005 21.4 0.4 9 15-23 1-9 (26)
10 2ra9_A Uncharacterized protein 26.8 28 0.00095 28.0 1.9 37 78-123 16-54 (150)
No 1
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=91.21 E-value=0.42 Score=41.52 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=42.4
Q ss_pred ceeEEeccCeeEeeeecCCC-----CcceEEe------------EeeeeC---C-CCceeeCCHHHHHHHHHHHhc
Q 028207 67 GLYEVDLVRRHCFPVYWNGD-----NRRVLRG------------HWFARK---G-GLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 67 glydVdl~~r~~~PvYW~g~-----~~eVrRg------------tWF~~~---~-~~~~~P~~e~la~~LE~~y~~ 121 (212)
+.|-||+.+|...--= .|. ...|||- .|+..+ + .+.|.||++.++..||.+|..
T Consensus 68 ~~y~IDf~sMtQ~~~d-tg~~~~~~~r~VRR~~~~PsS~~g~g~vWeW~d~~~D~~G~W~~Y~~~vs~~IE~Ay~~ 142 (240)
T 2a90_A 68 EQYYVNVRTMTQESEA-ETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYNMHVQSIIEDAWAR 142 (240)
T ss_dssp TTCEEETTTTEEEC----------CCCBEEEEEECTTSHHHHTEEEEEECSSSSCCSSEEECCHHHHHHHHHHHHT
T ss_pred CceEEeccccEEEeec-cCccccccceeeeeccccCCCcCCCccEEEEeCCCCCCCCceEECCHHHHHHHHHHHhc
Confidence 7799999999875422 555 7899993 788887 3 368999999999999999987
No 2
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=89.22 E-value=0.34 Score=35.40 Aligned_cols=27 Identities=22% Similarity=0.558 Sum_probs=23.9
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 94 HWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 94 tWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
.||+.+++ .|.+|++.++..||++|.+
T Consensus 6 ~W~w~~~~-GW~~Yd~~~s~~IE~af~~ 32 (85)
T 3v3l_A 6 AWYYEGRN-GWWQYDERTSRELEDAFSK 32 (85)
T ss_dssp EEEEECSS-SEEECCHHHHHHHHHHHHT
T ss_pred EEEEeCCC-CceeCCHHHHHHHHHHHHh
Confidence 59998654 5999999999999999986
No 3
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=84.42 E-value=0.75 Score=35.30 Aligned_cols=27 Identities=22% Similarity=0.558 Sum_probs=23.7
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 94 HWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 94 tWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
.||+.+++ .|.+|++..+..||++|.+
T Consensus 31 ~W~w~gd~-GW~~Yd~~~s~~IE~Ay~~ 57 (110)
T 1ujr_A 31 AWYYEGRN-GWWQYDERTSRELEDAFSK 57 (110)
T ss_dssp EEEEECSS-SEEECCSHHHHHHHHHHHH
T ss_pred EEEEeCCC-CCccCCHHHHHHHHHHHHc
Confidence 69998544 5999999999999999986
No 4
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.69 E-value=0.92 Score=34.23 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=24.1
Q ss_pred EeeeeCCCCceeeCCHHH-------HHHHHHHHhc
Q 028207 94 HWFARKGGLDWLPIREDV-------AEQLEIAYRS 121 (212)
Q Consensus 94 tWF~~~~~~~~~P~~e~l-------a~~LE~~y~~ 121 (212)
.||.+++.+.|.||+.++ +..||.+|+.
T Consensus 21 ~W~W~de~G~W~~Y~~~~~~~~sv~S~~IE~ay~~ 55 (102)
T 2dk6_A 21 GWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKT 55 (102)
T ss_dssp EEEECCSSSCCEECCCBSSTTCBCCHHHHHHHHHH
T ss_pred EEEEECCCCceeECCccccccccccHHHHHHHHhh
Confidence 599987666899999866 8999999986
No 5
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=69.04 E-value=3.7 Score=35.56 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.6
Q ss_pred eEeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 93 GHWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 93 gtWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
..|.+.++ ++|.||+..+++.||++|.+
T Consensus 26 ~vWEwqd~-g~W~pYs~~v~~~IE~a~~~ 53 (240)
T 2a90_A 26 SVWEFESR-GKWLPYSPAVSQHLERAHAK 53 (240)
T ss_dssp EEEEEEET-TEEEECCHHHHHHHHHHHHT
T ss_pred EEEEEecC-CeEeeCCHHHHHHHHHHhcC
Confidence 56888765 69999999999999999986
No 6
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.70 E-value=14 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.6
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 028207 94 HWFARKGGLDWLPIREDVAEQLEIAYRS 121 (212)
Q Consensus 94 tWF~~~~~~~~~P~~e~la~~LE~~y~~ 121 (212)
.|-|.+ ++.|.|++.-...+||++|+.
T Consensus 28 eWqY~d-~~~~~~FDk~TNl~LEeA~~~ 54 (99)
T 1x4r_A 28 EWQYID-KNITQCFDKMTNMKLEVAWKA 54 (99)
T ss_dssp EEEEEC-SSCEEECCTTHHHHHHHHHHT
T ss_pred EEEEeC-CCeEeechHHHHHHHHHHHHc
Confidence 498975 558999999999999999975
No 7
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.84 E-value=35 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=28.5
Q ss_pred CcceeEeecCceeEEeccCeeEeeeecCCCCcceEE
Q 028207 57 EERVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (212)
Q Consensus 57 ~~~~~V~V~gglydVdl~~r~~~PvYW~g~~~eVrR 92 (212)
...+.|.++|-.|.||+..+...- =.|..+.|+|
T Consensus 56 k~~v~VkI~~~~y~Vdl~t~~A~~--~~G~~~~v~R 89 (99)
T 1x4r_A 56 KKDTVVQIHNQDFTVDLSTNTATA--PQGQTFTVQR 89 (99)
T ss_dssp CSEEEEEETTEEEEEETTTTEEEC--TTSCEEEEEE
T ss_pred CCceEEEECCEEEEEEcCcceeec--CCCCEEEEEE
Confidence 556679999999999999988877 5678888888
No 8
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=33.42 E-value=18 Score=21.05 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=7.8
Q ss_pred HHHHHHHHh
Q 028207 15 NWWKEYAEC 23 (212)
Q Consensus 15 ~~w~~~~~~ 23 (212)
+||++|+-|
T Consensus 3 ~w~R~~~a~ 11 (26)
T 2vof_B 3 EWAREIGAQ 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 699999877
No 9
>2yj1_B Alpha-beta-PUMA BH3 foldamer; apoptosis, membrane protein, BH3 domain, autophagy; HET: HT7 B3E B3Q HR7; 2.24A {Synthetic construct}
Probab=28.70 E-value=15 Score=21.39 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=6.4
Q ss_pred HHHHHHHHh
Q 028207 15 NWWKEYAEC 23 (212)
Q Consensus 15 ~~w~~~~~~ 23 (212)
+||++|+-|
T Consensus 1 ~~~R~~~a~ 9 (26)
T 2yj1_B 1 XXARXIGAX 9 (26)
T ss_dssp -CHHHHHHH
T ss_pred ChHHHHHHH
Confidence 488888876
No 10
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=26.84 E-value=28 Score=27.98 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=20.8
Q ss_pred EeeeecCCCC-cceEE-eEeeeeCCCCceeeCCHHHHHHHHHHHhccc
Q 028207 78 CFPVYWNGDN-RRVLR-GHWFARKGGLDWLPIREDVAEQLEIAYRSQV 123 (212)
Q Consensus 78 ~~PvYW~g~~-~eVrR-gtWF~~~~~~~~~P~~e~la~~LE~~y~~~~ 123 (212)
-.|-+...-. ++|.| |+|||.+ .|+.. .|-+-+.+..
T Consensus 16 ~~p~~cgd~dli~I~~dG~W~y~G-----~pI~r----~lVrLFssiL 54 (150)
T 2ra9_A 16 TTTPLCSEVPLFDINALGDWTYLG-----TSLPA----KFAKLFASIL 54 (150)
T ss_dssp ------CCCCSEEECTTSCEEETT-----EECCH----HHHHHHHTTE
T ss_pred CCCCCccCcCceEECCCCcEEECC-----ccccH----HHHHHHHHhe
Confidence 3455555534 67777 9999975 58884 3566665533
Done!