BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028208
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 21/184 (11%)
Query: 27 LIIVVLLIIFLFWAITRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPND 86
I L W R KP +Q+ + A G P + T L + NPN
Sbjct: 21 FIFTAGLTSLFLWLSLRADKPKCSIQNFFIPAL----GKDPNSRDNTTLNFMVRCDNPNK 76
Query: 87 QIGIYYQKADV-YASYRNQQISLATL-------LPATYQGH-KDVIVWSPFLCGNSVPVS 137
GIYY + +++ +I+ + L +P YQGH K W G P++
Sbjct: 77 DKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKW-----GQVKPLN 131
Query: 138 PFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAYITFGDKSKGIASG 197
L L G + + + ++++K+ W + RY + V + GD K G
Sbjct: 132 N--QTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVN-GDGVKAQKKG 188
Query: 198 ASLK 201
+K
Sbjct: 189 IKMK 192
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 41 ITRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYAS 100
+ R + F + DA L F+L + N L +L + ++ RN IGI+Y + +
Sbjct: 1 MVRSNDVKFQVYDAELTHFDLESN----NNLQYSLSLNLSIRNSKSSIGIHYDRFEATVY 56
Query: 101 YRNQQISLATLLPATYQGHKDVIVWSPFLCGNS-VPVSPFVAEALGQDLNAGMVMVNIKV 159
Y NQ++ A +P Y G K+ ++ G + V + + D G+ +++K+
Sbjct: 57 YMNQRLG-AVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKL 115
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 4/139 (2%)
Query: 43 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYR 102
RP + + ++ A++ F + NA I + NP + + Y + ++
Sbjct: 63 RPKRLIYTVEAASVQEFAIGNNDDHINA---KFSYVIKSYNPEKHVSVRYHSMRISTAHH 119
Query: 103 NQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGR 162
NQ ++ + P + + + + + N V +S F A L + + G + + + + R
Sbjct: 120 NQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRAEKSKGTIEMEVYITAR 178
Query: 163 IKWKVGTWISGRYHLHVNC 181
+ +K + S R L C
Sbjct: 179 VSYKTWIFRSRRRTLKAVC 197
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 65 PSP-PNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGH 119
P P P + TT +PND+ Y + D +ASY N+Q S L+ + + H
Sbjct: 98 PKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPH 153
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 65 PSP-PNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGH 119
P P P + TT +PND+ Y + D +ASY N+Q S L+ + + H
Sbjct: 98 PKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPH 153
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 65 PSP-PNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGH 119
P P P + TT +PND+ Y + D +ASY N+Q S L+ + + H
Sbjct: 98 PKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPH 153
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 65 PSP-PNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGH 119
P P P + TT +PND+ Y + D +ASY N+Q S L+ + + H
Sbjct: 98 PKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPH 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,475,852
Number of Sequences: 539616
Number of extensions: 3081730
Number of successful extensions: 6821
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6820
Number of HSP's gapped (non-prelim): 15
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)