Query 028208
Match_columns 212
No_of_seqs 111 out of 835
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.5E-37 3.2E-42 254.9 24.9 187 11-212 31-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 3.3E-13 7.1E-18 97.0 8.6 99 78-182 1-100 (101)
3 smart00769 WHy Water Stress an 98.5 2.5E-06 5.3E-11 61.6 10.5 85 69-160 11-97 (100)
4 PF07092 DUF1356: Protein of u 98.0 0.0024 5.2E-08 52.8 18.5 83 43-130 97-180 (238)
5 PF12751 Vac7: Vacuolar segreg 97.5 0.00044 9.5E-09 60.7 7.7 88 11-107 294-381 (387)
6 COG5608 LEA14-like dessication 97.2 0.051 1.1E-06 41.9 15.4 83 45-137 31-113 (161)
7 PLN03160 uncharacterized prote 95.8 0.15 3.2E-06 42.0 10.7 108 8-124 31-147 (219)
8 PF14155 DUF4307: Domain of un 82.5 11 0.00024 27.6 7.6 31 100-133 71-102 (112)
9 TIGR02588 conserved hypothetic 72.0 10 0.00022 28.3 4.8 50 27-87 12-63 (122)
10 KOG3950 Gamma/delta sarcoglyca 69.1 6.3 0.00014 33.0 3.5 24 68-91 103-126 (292)
11 COG1580 FliL Flagellar basal b 68.7 27 0.00058 27.3 6.8 39 3-42 4-42 (159)
12 PRK05529 cell division protein 60.1 15 0.00033 30.8 4.3 48 46-94 58-128 (255)
13 PHA02844 putative transmembran 57.0 14 0.00031 25.0 2.9 27 14-40 43-69 (75)
14 PRK07021 fliL flagellar basal 56.6 52 0.0011 25.5 6.6 29 77-107 67-95 (162)
15 PF11837 DUF3357: Domain of un 56.2 3.7 8.1E-05 29.8 0.0 25 13-37 24-48 (106)
16 COG5353 Uncharacterized protei 53.8 8 0.00017 29.9 1.5 32 14-45 3-34 (161)
17 PF10907 DUF2749: Protein of u 53.7 20 0.00043 23.7 3.1 16 30-45 13-28 (66)
18 PHA02650 hypothetical protein; 53.3 10 0.00022 26.0 1.7 27 14-40 44-70 (81)
19 PF04790 Sarcoglycan_1: Sarcog 52.5 1.4E+02 0.0031 25.2 9.7 19 69-87 82-100 (264)
20 PF11906 DUF3426: Protein of u 52.3 62 0.0014 24.3 6.3 55 49-108 48-103 (149)
21 COG2332 CcmE Cytochrome c-type 52.1 1.1E+02 0.0023 23.8 7.3 32 81-112 78-109 (153)
22 PF06072 Herpes_US9: Alphaherp 51.6 4.2 9.1E-05 26.3 -0.3 6 13-18 28-33 (60)
23 PF12428 DUF3675: Protein of u 51.5 13 0.00028 27.6 2.2 27 4-30 51-77 (118)
24 PF09624 DUF2393: Protein of u 50.6 1.1E+02 0.0023 23.1 7.8 61 34-107 33-95 (149)
25 PHA02819 hypothetical protein; 50.5 15 0.00032 24.6 2.1 7 33-39 60-66 (71)
26 COG4698 Uncharacterized protei 49.9 14 0.0003 29.5 2.3 39 16-56 10-48 (197)
27 PRK10893 lipopolysaccharide ex 49.6 1.3E+02 0.0029 24.0 9.6 21 43-63 37-57 (192)
28 PF09307 MHC2-interact: CLIP, 48.5 5.9 0.00013 29.2 0.0 33 11-44 23-58 (114)
29 PHA02692 hypothetical protein; 48.3 16 0.00034 24.5 2.0 17 9-25 35-51 (70)
30 PF09604 Potass_KdpF: F subuni 45.1 7.8 0.00017 20.6 0.2 19 28-46 6-24 (25)
31 PF15012 DUF4519: Domain of un 45.1 27 0.00058 22.3 2.6 17 29-45 40-56 (56)
32 PF14927 Neurensin: Neurensin 44.8 30 0.00064 26.5 3.3 26 24-50 50-75 (140)
33 PF04478 Mid2: Mid2 like cell 44.5 18 0.00039 28.1 2.1 22 28-49 61-82 (154)
34 PRK12785 fliL flagellar basal 43.8 1.4E+02 0.0031 23.2 7.2 30 76-106 73-102 (166)
35 PRK06531 yajC preprotein trans 43.8 12 0.00025 27.6 1.0 10 37-46 15-24 (113)
36 PF12505 DUF3712: Protein of u 43.7 65 0.0014 23.6 5.1 27 71-98 98-124 (125)
37 PF15145 DUF4577: Domain of un 41.6 28 0.00061 25.5 2.6 30 15-44 59-88 (128)
38 PF12575 DUF3753: Protein of u 41.2 33 0.00071 23.1 2.7 6 35-40 64-69 (72)
39 PF11395 DUF2873: Protein of u 40.7 11 0.00024 22.0 0.3 17 27-43 17-33 (43)
40 PF00927 Transglut_C: Transglu 39.2 1.3E+02 0.0029 21.0 6.0 62 69-130 11-75 (107)
41 KOG3927 Na+/K+ ATPase, beta su 38.6 19 0.0004 31.2 1.5 51 12-63 40-93 (300)
42 PRK13183 psbN photosystem II r 38.4 50 0.0011 20.2 2.9 21 24-44 12-32 (46)
43 PRK14759 potassium-transportin 37.9 13 0.00027 20.5 0.3 19 28-46 10-28 (29)
44 TIGR02115 potass_kdpF K+-trans 37.7 5.4 0.00012 21.4 -1.2 19 28-46 5-23 (26)
45 PF06024 DUF912: Nucleopolyhed 35.5 52 0.0011 23.5 3.3 24 19-42 63-86 (101)
46 CHL00020 psbN photosystem II p 35.5 55 0.0012 19.8 2.8 21 24-44 9-29 (43)
47 PF08693 SKG6: Transmembrane a 35.3 10 0.00023 22.5 -0.3 11 33-43 27-37 (40)
48 PRK07718 fliL flagellar basal 34.3 54 0.0012 24.9 3.4 16 91-106 63-78 (142)
49 COG1589 FtsQ Cell division sep 33.9 37 0.0008 28.6 2.6 74 28-102 39-135 (269)
50 PF02468 PsbN: Photosystem II 33.2 40 0.00086 20.4 1.9 21 24-44 9-29 (43)
51 PF07423 DUF1510: Protein of u 32.8 28 0.00061 28.6 1.7 14 12-25 8-21 (217)
52 TIGR03726 strep_RK_lipo putati 32.6 36 0.00077 19.5 1.6 22 12-33 4-25 (34)
53 cd01324 cbb3_Oxidase_CcoQ Cyto 31.5 24 0.00053 21.7 0.9 20 27-46 16-35 (48)
54 PF05545 FixQ: Cbb3-type cytoc 30.3 18 0.00039 22.2 0.1 13 34-46 22-34 (49)
55 PF06092 DUF943: Enterobacteri 30.2 33 0.00071 26.8 1.6 14 31-44 15-28 (157)
56 PF01102 Glycophorin_A: Glycop 29.5 20 0.00042 26.8 0.2 24 30-53 77-101 (122)
57 PF09911 DUF2140: Uncharacteri 29.1 87 0.0019 25.0 3.9 28 18-47 4-31 (187)
58 PF14654 Epiglycanin_C: Mucin, 28.8 64 0.0014 23.1 2.7 24 17-40 18-41 (106)
59 PF12751 Vac7: Vacuolar segreg 27.2 42 0.00092 30.0 1.9 47 9-56 295-343 (387)
60 PRK13717 conjugal transfer pro 26.3 78 0.0017 23.8 2.9 17 35-51 33-49 (128)
61 PF04573 SPC22: Signal peptida 26.1 2.7E+02 0.0059 22.0 6.2 13 42-54 32-44 (175)
62 PF02009 Rifin_STEVOR: Rifin/s 26.0 22 0.00048 30.7 -0.0 17 27-43 264-280 (299)
63 PF13396 PLDc_N: Phospholipase 25.9 82 0.0018 18.6 2.5 15 31-45 32-46 (46)
64 PF09865 DUF2092: Predicted pe 25.2 3.8E+02 0.0083 21.9 9.2 40 68-108 34-75 (214)
65 COG4736 CcoQ Cbb3-type cytochr 24.7 24 0.00052 23.0 -0.1 13 34-46 22-34 (60)
66 PTZ00382 Variant-specific surf 24.5 29 0.00062 24.7 0.3 14 30-43 79-93 (96)
67 PF03100 CcmE: CcmE; InterPro 24.2 69 0.0015 23.9 2.4 8 96-103 83-90 (131)
68 PF08113 CoxIIa: Cytochrome c 24.1 34 0.00073 19.5 0.5 12 29-40 13-24 (34)
69 PF05781 MRVI1: MRVI1 protein; 23.1 52 0.0011 30.7 1.8 27 18-44 478-504 (538)
70 PF12321 DUF3634: Protein of u 22.4 32 0.0007 25.1 0.2 16 35-50 10-27 (108)
71 PF14283 DUF4366: Domain of un 22.2 86 0.0019 25.8 2.7 9 41-49 182-190 (218)
72 PF10856 DUF2678: Protein of u 21.9 1.1E+02 0.0025 22.6 3.0 28 12-39 25-52 (118)
73 PF14828 Amnionless: Amnionles 21.7 55 0.0012 29.9 1.6 23 27-49 347-369 (437)
74 PHA02902 putative IMV membrane 21.2 28 0.00061 22.9 -0.2 20 24-43 6-25 (70)
75 PRK05696 fliL flagellar basal 21.0 66 0.0014 25.1 1.8 28 77-107 76-103 (170)
76 PHA03093 EEV glycoprotein; Pro 20.9 53 0.0012 26.3 1.2 18 8-25 26-43 (185)
77 PRK13150 cytochrome c-type bio 20.6 4.2E+02 0.0091 20.7 10.6 32 76-107 79-110 (159)
78 PF04881 Adeno_GP19K: Adenovir 20.6 1.1E+02 0.0024 23.1 2.7 12 35-46 119-130 (139)
79 PHA03049 IMV membrane protein; 20.1 33 0.00071 22.7 -0.1 18 26-43 7-24 (68)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=254.89 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=160.2
Q ss_pred CcccceehhhHHHHHHHHHHHHHHhheeeEEecCCCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEE
Q 028208 11 DDRKKLVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGI 90 (212)
Q Consensus 11 ~~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i 90 (212)
.+|++|++||+|++++++++++++++++|++||||+|+|+++++++++|+++..+.....+|++++++++++|||. +++
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 4677788888888777777788889999999999999999999999999987533235688999999999999996 899
Q ss_pred EEEceEEEEEEcCeEEecccCCCceeecCCCeEEEEEEEEeeccccCHHHHHHHhccccCCeEEEEEEEEEEEEEEEeEE
Q 028208 91 YYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTW 170 (212)
Q Consensus 91 ~Y~~~~~~v~Y~g~~lg~~~~vp~F~q~~r~~~~v~~~l~~~~v~l~~~~~~~l~~d~~~g~v~l~v~v~~~vr~~vg~~ 170 (212)
+|+++++.++|+|+.+| .+.+|+|+|++|+++.+.+++......+..+ .+|.+|.++|.++|+++++.++|+++|.+
T Consensus 110 ~Y~~~~~~v~Y~g~~vG-~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i 186 (219)
T PLN03160 110 KYSNTTTTIYYGGTVVG-EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKI 186 (219)
T ss_pred EEcCeEEEEEECCEEEE-EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999 6999999999999999998876554333222 36889999999999999999999999999
Q ss_pred EEeeEEEEEEeeEEEEecCCCCCcccCcccccccCCCeeEeC
Q 028208 171 ISGRYHLHVNCPAYITFGDKSKGIASGASLKFQLVQSCSVDV 212 (212)
Q Consensus 171 ~~~~~~~~v~C~l~~~v~~~~~~~~~~~~~~~~~~~~C~~~~ 212 (212)
.++++..+++|++.+++++. .++ .++|++++
T Consensus 187 ~k~~v~~~v~C~v~V~~~~~----------~i~-~~~C~~~~ 217 (219)
T PLN03160 187 IKKHVVVKMNCTMTVNITSQ----------AIQ-GQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEeEEEEECCCC----------EEe-ccEecccc
Confidence 88999999999999987533 565 57899874
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.46 E-value=3.3e-13 Score=96.97 Aligned_cols=99 Identities=26% Similarity=0.336 Sum_probs=73.2
Q ss_pred EEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCCceeecCCCeEEEEEEEEeeccccCHHHHHHHhccccCCeEEEEE
Q 028208 78 TITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNI 157 (212)
Q Consensus 78 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~F~q~~r~~~~v~~~l~~~~v~l~~~~~~~l~~d~~~g~v~l~v 157 (212)
+|+++|||. ++++|++.++.++|+|+.+|.....|+|+|++++++.+.+.+..+...+ .+.+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 588999997 9999999999999999999944789999999999999998877776444 34555555 56677777
Q ss_pred EEEEEEEEEE-eEEEEeeEEEEEEee
Q 028208 158 KVDGRIKWKV-GTWISGRYHLHVNCP 182 (212)
Q Consensus 158 ~v~~~vr~~v-g~~~~~~~~~~v~C~ 182 (212)
.+++++++++ +.....++.+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 7778888874 433223455555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.48 E-value=2.5e-06 Score=61.62 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=64.5
Q ss_pred ceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCC-ceeecCCCeEEEEEEEEeeccccCHHHHHHHhcc
Q 028208 69 NALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLP-ATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQD 147 (212)
Q Consensus 69 ~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~F~q~~r~~~~v~~~l~~~~v~l~~~~~~~l~~d 147 (212)
...+.++.+.++++||| .+++.|++++..++|+|..+| ++..+ ++..++++++.+.+.+... ..... .+..+
T Consensus 11 ~~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~g~~v~-~g~~~~~~~ipa~~~~~v~v~~~~~-~~~~~----~~~~~ 83 (100)
T smart00769 11 SGLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLNGVELG-SGEIPDSGTLPGNGRTVLDVPVTVN-LFLAE----ALIWH 83 (100)
T ss_pred cceEEEEEEEEEEECCC-CCccccccEEEEEEECCEEEE-EEEcCCCcEECCCCcEEEEEEEEee-hhHhH----HHHHh
Confidence 45679999999999999 589999999999999999999 58875 7999999999998887763 22222 33344
Q ss_pred ccCC-eEEEEEEEE
Q 028208 148 LNAG-MVMVNIKVD 160 (212)
Q Consensus 148 ~~~g-~v~l~v~v~ 160 (212)
+.+| .++++++.+
T Consensus 84 l~~~~~~~y~l~g~ 97 (100)
T smart00769 84 IANGEEIPYRLDGK 97 (100)
T ss_pred hccCCCccEEEEEE
Confidence 4444 355555443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.96 E-value=0.0024 Score=52.83 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=60.5
Q ss_pred cCCCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCC-ceeecCCC
Q 028208 43 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLP-ATYQGHKD 121 (212)
Q Consensus 43 rP~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~F~q~~r~ 121 (212)
=||...++-.++......++.. ...+..++.-.|.+.||| +..+.-.++.++++|....+| .+... -...+|++
T Consensus 97 fPRsV~v~~~gv~s~~V~f~~~---~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG-~~~~~~~~~I~Prs 171 (238)
T PF07092_consen 97 FPRSVTVSPVGVKSVTVSFNPD---KSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVG-KGKNSNITVIGPRS 171 (238)
T ss_pred eCcEEEEecCcEEEEEEEEeCC---CCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEe-eeEecceEEecccC
Confidence 3876665544444443333332 367888999999999999 899999999999999999999 56554 34667787
Q ss_pred eEEEEEEEE
Q 028208 122 VIVWSPFLC 130 (212)
Q Consensus 122 ~~~v~~~l~ 130 (212)
.+.+...+.
T Consensus 172 ~~q~~~tV~ 180 (238)
T PF07092_consen 172 SKQVNYTVK 180 (238)
T ss_pred CceEEEEee
Confidence 776666544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.48 E-value=0.00044 Score=60.68 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=57.3
Q ss_pred CcccceehhhHHHHHHHHHHHHHHhheeeEEecCCCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEE
Q 028208 11 DDRKKLVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGI 90 (212)
Q Consensus 11 ~~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i 90 (212)
++|+.|.|+.+|+++.+++++. +.+++-++|--.+|--.|+-..+.+.-.+ .-..-|++++.+.||| .+.|
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~-ig~~~gFv~AttKpL~~v~v~~I~NVlaS-------~qELmfdl~V~A~NPn-~~~V 364 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLV-IGFAIGFVFATTKPLTDVQVVSIQNVLAS-------EQELMFDLTVEAFNPN-WFTV 364 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHH-HHHHHHhhhhcCcccccceEEEeeeeeec-------cceEEEeeEEEEECCC-eEEE
Confidence 4577777777777655443332 23333334444445444544555544332 3457889999999999 5999
Q ss_pred EEEceEEEEEEcCeEEe
Q 028208 91 YYQKADVYASYRNQQIS 107 (212)
Q Consensus 91 ~Y~~~~~~v~Y~g~~lg 107 (212)
..++.++.||-+..-+|
T Consensus 365 ~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 365 TIDDMDLDIFAKSRYVG 381 (387)
T ss_pred EeccceeeeEecCCccC
Confidence 99999999998877666
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.23 E-value=0.051 Score=41.93 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=63.0
Q ss_pred CCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCCceeecCCCeEE
Q 028208 45 SKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIV 124 (212)
Q Consensus 45 ~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~F~q~~r~~~~ 124 (212)
++|.+.--.+..-....+ ...+-.++.++||| -+++-...++..++-.|..+|......++..++++...
T Consensus 31 ~~p~ve~~ka~wGkvt~s---------~~EiV~t~KiyNPN-~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~t 100 (161)
T COG5608 31 KKPGVESMKAKWGKVTNS---------ETEIVGTLKIYNPN-PFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRET 100 (161)
T ss_pred CCCCceEEEEEEEEEecc---------ceEEEEEEEecCCC-CcceeeeceEEEEEEcceEeeccccccceEECCCCeEE
Confidence 456665555555443322 36778899999999 58999999999999999999953346789999999999
Q ss_pred EEEEEEeeccccC
Q 028208 125 WSPFLCGNSVPVS 137 (212)
Q Consensus 125 v~~~l~~~~v~l~ 137 (212)
+.+.+..+.-.+.
T Consensus 101 vdv~l~~d~~~~k 113 (161)
T COG5608 101 VDVPLRLDNSKIK 113 (161)
T ss_pred EEEEEEEehHHHH
Confidence 9998876654433
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.82 E-value=0.15 Score=42.00 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCCCcccceehhhHHHHHHHHHHHHHHhheeeEEecCC--CCEEEEEeEEEeE-------EeccCCCCCCceeeEEEEEE
Q 028208 8 HSHDDRKKLVRLILYAVGGLIIVVLLIIFLFWAITRPS--KPSFILQDATLYA-------FNLSTGPSPPNALTTNLQVT 78 (212)
Q Consensus 8 ~~~~~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP~--~P~~~v~~~~l~~-------~~~~~~~~~~~~l~~~~~~~ 78 (212)
..++++.+||.|++.+++++++++++++++++--=+|+ .-.++++++.+.. +|++-.. .=..-|.|. +.
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~-~v~v~NPN~-~~ 108 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIA-DVSVKNPNV-AS 108 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEE-EEEEECCCc-ee
Confidence 37899999999999999988888888888777767774 4566666666532 2211100 000012333 33
Q ss_pred EEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCCceeecCCCeEE
Q 028208 79 ITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIV 124 (212)
Q Consensus 79 l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~F~q~~r~~~~ 124 (212)
+... . -.+.++|++-.+.- ..+. ++..+++.+..-+.+.
T Consensus 109 ~~Y~-~-~~~~v~Y~g~~vG~----a~~p-~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 109 FKYS-N-TTTTIYYGGTVVGE----ARTP-PGKAKARRTMRMNVTV 147 (219)
T ss_pred EEEc-C-eEEEEEECCEEEEE----EEcC-CcccCCCCeEEEEEEE
Confidence 4443 2 35889998865442 2344 4677777777666664
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=82.54 E-value=11 Score=27.62 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=15.6
Q ss_pred EEcCeEEec-ccCCCceeecCCCeEEEEEEEEeec
Q 028208 100 SYRNQQISL-ATLLPATYQGHKDVIVWSPFLCGNS 133 (212)
Q Consensus 100 ~Y~g~~lg~-~~~vp~F~q~~r~~~~v~~~l~~~~ 133 (212)
.|.+..+|. ...+|| +...+..+.+.+...+
T Consensus 71 ~~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt~ 102 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP---SGERTVRVTVTVRTTA 102 (112)
T ss_pred eCCCCEEEEEEEEECC---CCCcEEEEEEEEEecC
Confidence 477778885 123455 2334444445444333
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=72.00 E-value=10 Score=28.29 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHHhheeeEEe--cCCCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCe
Q 028208 27 LIIVVLLIIFLFWAIT--RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQ 87 (212)
Q Consensus 27 l~ll~gi~~~i~~lv~--rP~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~ 87 (212)
.+++++++.+++|..+ +++.|.+.+......+-. ...+.+-++++|-...
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~-----------~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQ-----------TGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEe-----------CCEEEEEEEEEeCCCc
Confidence 3444555666666644 567899988776654322 2345667778887643
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=69.10 E-value=6.3 Score=32.96 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=18.2
Q ss_pred CceeeEEEEEEEEEeCCCCeEEEE
Q 028208 68 PNALTTNLQVTITTRNPNDQIGIY 91 (212)
Q Consensus 68 ~~~l~~~~~~~l~~~NPN~~~~i~ 91 (212)
+..+...=++++.++|||.++.=+
T Consensus 103 ~l~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred ceEEEeccCeeEEccCCCCceeee
Confidence 346677778999999999876433
No 11
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=68.65 E-value=27 Score=27.31 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=20.4
Q ss_pred ccccCCCCCcccceehhhHHHHHHHHHHHHHHhheeeEEe
Q 028208 3 EKDCGHSHDDRKKLVRLILYAVGGLIIVVLLIIFLFWAIT 42 (212)
Q Consensus 3 ~~~~~~~~~~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv~ 42 (212)
+.+-..+..+|.+...++. ++++.++++++.+..+|+..
T Consensus 4 ~~~~~~~~~~~k~~~~I~l-iv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 4 EEDAGAPAKKKKKSLWILL-IVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred hhhcCCCccCCCceeehHH-HHHHHHHHHHHHHHHHhhhc
Confidence 3445555555555433333 33334555556666777665
No 12
>PRK05529 cell division protein FtsQ; Provisional
Probab=60.14 E-value=15 Score=30.82 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=28.8
Q ss_pred CCEEEEEeEEEeEEeccCC------C---CCCcee--------------eEEEEEEEEEeCCCCeEEEEEEc
Q 028208 46 KPSFILQDATLYAFNLSTG------P---SPPNAL--------------TTNLQVTITTRNPNDQIGIYYQK 94 (212)
Q Consensus 46 ~P~~~v~~~~l~~~~~~~~------~---~~~~~l--------------~~~~~~~l~~~NPN~~~~i~Y~~ 94 (212)
.|.|.|..+.+++-...+. . .+.+.+ -.-=++.++-+.|| .+.|.-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~-tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPG-TIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCC-EEEEEEEE
Confidence 4899999999986543211 0 011111 22335677788999 57777755
No 13
>PHA02844 putative transmembrane protein; Provisional
Probab=57.00 E-value=14 Score=24.96 Aligned_cols=27 Identities=4% Similarity=0.095 Sum_probs=12.6
Q ss_pred cceehhhHHHHHHHHHHHHHHhheeeE
Q 028208 14 KKLVRLILYAVGGLIIVVLLIIFLFWA 40 (212)
Q Consensus 14 ~~~~~~~~~~~~~l~ll~gi~~~i~~l 40 (212)
+++.....++++++++++.++..++||
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444344444445555665
No 14
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.63 E-value=52 Score=25.50 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=17.9
Q ss_pred EEEEEeCCCCeEEEEEEceEEEEEEcCeEEe
Q 028208 77 VTITTRNPNDQIGIYYQKADVYASYRNQQIS 107 (212)
Q Consensus 77 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 107 (212)
++++...+.. +-+|-..++.+.+.+....
T Consensus 67 f~VNL~~~~~--~~rylkv~i~L~~~~~~~~ 95 (162)
T PRK07021 67 FTVNLQPDDD--ADRVLYVGLTLRLPDEATR 95 (162)
T ss_pred EEEEcCCCCC--CceEEEEEEEEEECCHHHH
Confidence 4555543432 4678888888877766544
No 15
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=56.18 E-value=3.7 Score=29.79 Aligned_cols=25 Identities=12% Similarity=0.410 Sum_probs=0.0
Q ss_pred ccceehhhHHHHHHHHHHHHHHhhe
Q 028208 13 RKKLVRLILYAVGGLIIVVLLIIFL 37 (212)
Q Consensus 13 r~~~~~~~~~~~~~l~ll~gi~~~i 37 (212)
|||-.+++..+++.+++++.+++++
T Consensus 24 ~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 24 RRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------------
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4443455555555555555555554
No 16
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.85 E-value=8 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=22.0
Q ss_pred cceehhhHHHHHHHHHHHHHHhheeeEEecCC
Q 028208 14 KKLVRLILYAVGGLIIVVLLIIFLFWAITRPS 45 (212)
Q Consensus 14 ~~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP~ 45 (212)
.++..++.+++++++++++.+++++|...+|.
T Consensus 3 kk~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 3 KKHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred ceEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 35556666555556666777788888888884
No 17
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=53.74 E-value=20 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=12.4
Q ss_pred HHHHHhheeeEEecCC
Q 028208 30 VVLLIIFLFWAITRPS 45 (212)
Q Consensus 30 l~gi~~~i~~lv~rP~ 45 (212)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4445678889999998
No 18
>PHA02650 hypothetical protein; Provisional
Probab=53.35 E-value=10 Score=25.98 Aligned_cols=27 Identities=4% Similarity=-0.007 Sum_probs=11.9
Q ss_pred cceehhhHHHHHHHHHHHHHHhheeeE
Q 028208 14 KKLVRLILYAVGGLIIVVLLIIFLFWA 40 (212)
Q Consensus 14 ~~~~~~~~~~~~~l~ll~gi~~~i~~l 40 (212)
+++.....++++++++++.++.+++||
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333343334444444555555
No 19
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=52.55 E-value=1.4e+02 Score=25.23 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=12.4
Q ss_pred ceeeEEEEEEEEEeCCCCe
Q 028208 69 NALTTNLQVTITTRNPNDQ 87 (212)
Q Consensus 69 ~~l~~~~~~~l~~~NPN~~ 87 (212)
..+..+=+++++++|+|..
T Consensus 82 l~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEEecCceEEEEecCCCc
Confidence 3445555677778888765
No 20
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=52.27 E-value=62 Score=24.33 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=36.6
Q ss_pred EEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEE-EcCeEEec
Q 028208 49 FILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYAS-YRNQQISL 108 (212)
Q Consensus 49 ~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~ 108 (212)
-.++.+++++..+... ..-.-.+.++.++.|..+ ....|-.+++.++ -+|+.+..
T Consensus 48 ~~~~~l~i~~~~~~~~----~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 48 RDIDALKIESSDLRPV----PDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred cCcceEEEeeeeEEee----cCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEE
Confidence 3455555544443321 112355677888999984 7899999999998 77887773
No 21
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=52.12 E-value=1.1e+02 Score=23.82 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=22.5
Q ss_pred EeCCCCeEEEEEEceEEEEEEcCeEEecccCC
Q 028208 81 TRNPNDQIGIYYQKADVYASYRNQQISLATLL 112 (212)
Q Consensus 81 ~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~v 112 (212)
+.--|..+.+.|..+--.++-+|+.+-..+.+
T Consensus 78 vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 78 VTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 33555678999988888888888876643433
No 22
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=51.59 E-value=4.2 Score=26.29 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.6
Q ss_pred ccceeh
Q 028208 13 RKKLVR 18 (212)
Q Consensus 13 r~~~~~ 18 (212)
|+|.|+
T Consensus 28 RrRrc~ 33 (60)
T PF06072_consen 28 RRRRCR 33 (60)
T ss_pred HHHHHH
Confidence 444444
No 23
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=51.48 E-value=13 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.3
Q ss_pred cccCCCCCcccceehhhHHHHHHHHHH
Q 028208 4 KDCGHSHDDRKKLVRLILYAVGGLIIV 30 (212)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~~~~l~ll 30 (212)
+||...+++.-.|||.+..++.+++++
T Consensus 51 ~e~~~~~~~~a~~CRsvAli~m~LLll 77 (118)
T PF12428_consen 51 DEYAASNTRGAACCRSVALIFMVLLLL 77 (118)
T ss_pred ccccccCCCceeHHHHHHHHHHHHHHH
Confidence 789999999999999998887765544
No 24
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=50.62 E-value=1.1e+02 Score=23.14 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=37.7
Q ss_pred HhheeeEEecC--CCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEe
Q 028208 34 IIFLFWAITRP--SKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQIS 107 (212)
Q Consensus 34 ~~~i~~lv~rP--~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 107 (212)
+.+++|.++.. ++|..++....- ++. +-.+.+..+++|-. +..+..=.+++.+...+...+
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~----------~~~~~v~g~V~N~g-~~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY----------SESFYVDGTVTNTG-KFTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee----------ccEEEEEEEEEECC-CCEeeEEEEEEEEEeCCCccC
Confidence 44445555544 345555544432 332 24556678899998 468888888888888665444
No 25
>PHA02819 hypothetical protein; Provisional
Probab=50.46 E-value=15 Score=24.61 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=2.8
Q ss_pred HHhheee
Q 028208 33 LIIFLFW 39 (212)
Q Consensus 33 i~~~i~~ 39 (212)
++.+++|
T Consensus 60 ~~~~flY 66 (71)
T PHA02819 60 IIFIIFY 66 (71)
T ss_pred HHHHHHH
Confidence 3334444
No 26
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.94 E-value=14 Score=29.48 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=22.9
Q ss_pred eehhhHHHHHHHHHHHHHHhheeeEEecCCCCEEEEEeEEE
Q 028208 16 LVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATL 56 (212)
Q Consensus 16 ~~~~~~~~~~~l~ll~gi~~~i~~lv~rP~~P~~~v~~~~l 56 (212)
+++.+|.+++++..++ +++++.+++.|+.|..++.+++=
T Consensus 10 ~WKw~f~iLLAln~l~--~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 10 YWKWLFFILLALNTLL--AVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHH--HHHhheeeccCCCCCchhhccCc
Confidence 4455555555443333 25555678899997766665543
No 27
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=49.62 E-value=1.3e+02 Score=24.01 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.5
Q ss_pred cCCCCEEEEEeEEEeEEeccC
Q 028208 43 RPSKPSFILQDATLYAFNLST 63 (212)
Q Consensus 43 rP~~P~~~v~~~~l~~~~~~~ 63 (212)
.++.|.|.+++++...++.+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467899999999999888654
No 28
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=48.48 E-value=5.9 Score=29.23 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CcccceehhhHHHHHH---HHHHHHHHhheeeEEecC
Q 028208 11 DDRKKLVRLILYAVGG---LIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 11 ~~r~~~~~~~~~~~~~---l~ll~gi~~~i~~lv~rP 44 (212)
..|++|.|.+.++-++ .++++|- ++..|++|.=
T Consensus 23 ~~~~s~sra~~vagltvLa~LLiAGQ-a~TaYfv~~Q 58 (114)
T PF09307_consen 23 PQRGSCSRALKVAGLTVLACLLIAGQ-AVTAYFVFQQ 58 (114)
T ss_dssp -------------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHhH-HHHHHHHHHh
Confidence 3566776776666443 3444443 5666888864
No 29
>PHA02692 hypothetical protein; Provisional
Probab=48.32 E-value=16 Score=24.47 Aligned_cols=17 Identities=24% Similarity=-0.027 Sum_probs=7.1
Q ss_pred CCCcccceehhhHHHHH
Q 028208 9 SHDDRKKLVRLILYAVG 25 (212)
Q Consensus 9 ~~~~r~~~~~~~~~~~~ 25 (212)
++.+++++.....++++
T Consensus 35 ~~~~~~~~~~~~~~ii~ 51 (70)
T PHA02692 35 PACDRSKGVPWTTVFLI 51 (70)
T ss_pred CcccccCCcchHHHHHH
Confidence 33444444444443333
No 30
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=45.14 E-value=7.8 Score=20.61 Aligned_cols=19 Identities=42% Similarity=0.995 Sum_probs=10.7
Q ss_pred HHHHHHHhheeeEEecCCC
Q 028208 28 IIVVLLIIFLFWAITRPSK 46 (212)
Q Consensus 28 ~ll~gi~~~i~~lv~rP~~ 46 (212)
++.+++.+-.+|..++|.+
T Consensus 6 ~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 6 IVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 3444455555566678853
No 31
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=45.06 E-value=27 Score=22.34 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=11.1
Q ss_pred HHHHHHhheeeEEecCC
Q 028208 29 IVVLLIIFLFWAITRPS 45 (212)
Q Consensus 29 ll~gi~~~i~~lv~rP~ 45 (212)
+++.++++++|+.-||+
T Consensus 40 ~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 40 AVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHhheeEEeccCC
Confidence 33334566778888885
No 32
>PF14927 Neurensin: Neurensin
Probab=44.82 E-value=30 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhheeeEEecCCCCEEE
Q 028208 24 VGGLIIVVLLIIFLFWAITRPSKPSFI 50 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~lv~rP~~P~~~ 50 (212)
+-++++++|++++++-.. -|++++..
T Consensus 50 ~g~l~Ll~Gi~~l~vgY~-vP~~~e~~ 75 (140)
T PF14927_consen 50 SGLLLLLLGIVALTVGYL-VPPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHhhcc-cCCcceec
Confidence 334567777765444332 35444443
No 33
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=44.51 E-value=18 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHhheeeEEecCCCCEE
Q 028208 28 IIVVLLIIFLFWAITRPSKPSF 49 (212)
Q Consensus 28 ~ll~gi~~~i~~lv~rP~~P~~ 49 (212)
.++++++++++|+..|++.-.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 4445677788888889876543
No 34
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=43.84 E-value=1.4e+02 Score=23.24 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=17.6
Q ss_pred EEEEEEeCCCCeEEEEEEceEEEEEEcCeEE
Q 028208 76 QVTITTRNPNDQIGIYYQKADVYASYRNQQI 106 (212)
Q Consensus 76 ~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~l 106 (212)
.+++++.-+... ..+|-...+.+.+.+...
T Consensus 73 ~fvVNL~~~~~~-~~ryLkv~i~L~~~~~~~ 102 (166)
T PRK12785 73 DMLVNLAGDPGE-RVQYLKLKVVLEVKDEKV 102 (166)
T ss_pred CEEEECCCCCCC-cceEEEEEEEEEECCHHH
Confidence 345555433321 357888888888877544
No 35
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=43.82 E-value=12 Score=27.64 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=6.9
Q ss_pred eeeEEecCCC
Q 028208 37 LFWAITRPSK 46 (212)
Q Consensus 37 i~~lv~rP~~ 46 (212)
++|+.+||..
T Consensus 15 i~yf~iRPQk 24 (113)
T PRK06531 15 LIFFMQRQQK 24 (113)
T ss_pred HHHheechHH
Confidence 4567799963
No 36
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=43.66 E-value=65 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred eeEEEEEEEEEeCCCCeEEEEEEceEEE
Q 028208 71 LTTNLQVTITTRNPNDQIGIYYQKADVY 98 (212)
Q Consensus 71 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~ 98 (212)
-..++..++.+.||+ .+++..+...+.
T Consensus 98 ~g~~~~~~~~l~NPS-~~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPS-PLTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCC-eEEEEeccEEEe
Confidence 356678888899999 588877776554
No 37
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=41.57 E-value=28 Score=25.54 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=18.8
Q ss_pred ceehhhHHHHHHHHHHHHHHhheeeEEecC
Q 028208 15 KLVRLILYAVGGLIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 15 ~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP 44 (212)
+.+-.+...++++++-++++.++++|+++-
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 444555555666666666677777777664
No 38
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=41.23 E-value=33 Score=23.14 Aligned_cols=6 Identities=0% Similarity=0.417 Sum_probs=2.4
Q ss_pred hheeeE
Q 028208 35 IFLFWA 40 (212)
Q Consensus 35 ~~i~~l 40 (212)
..++||
T Consensus 64 l~flYL 69 (72)
T PF12575_consen 64 LTFLYL 69 (72)
T ss_pred HHHHHh
Confidence 334443
No 39
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=40.72 E-value=11 Score=21.99 Aligned_cols=17 Identities=24% Similarity=0.860 Sum_probs=9.4
Q ss_pred HHHHHHHHhheeeEEec
Q 028208 27 LIIVVLLIIFLFWAITR 43 (212)
Q Consensus 27 l~ll~gi~~~i~~lv~r 43 (212)
+++++.+..+|+|+++.
T Consensus 17 llflv~imliif~f~le 33 (43)
T PF11395_consen 17 LLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444455677777543
No 40
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.22 E-value=1.3e+02 Score=21.04 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=35.8
Q ss_pred ceeeEEEEEEEEEeCCCCeE--EEEEEceEEEEEEcCeEEec-ccCCCceeecCCCeEEEEEEEE
Q 028208 69 NALTTNLQVTITTRNPNDQI--GIYYQKADVYASYRNQQISL-ATLLPATYQGHKDVIVWSPFLC 130 (212)
Q Consensus 69 ~~l~~~~~~~l~~~NPN~~~--~i~Y~~~~~~v~Y~g~~lg~-~~~vp~F~q~~r~~~~v~~~l~ 130 (212)
..+.-++.+.++++||.... .+...=....++|.|..... .........+|+++..+...+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 34567889999999997421 12222245666888876421 1234456667788877776553
No 41
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=38.60 E-value=19 Score=31.19 Aligned_cols=51 Identities=10% Similarity=0.255 Sum_probs=30.8
Q ss_pred cccceehhhHHHHHHHHHHHHHHhheeeEE---ecCCCCEEEEEeEEEeEEeccC
Q 028208 12 DRKKLVRLILYAVGGLIIVVLLIIFLFWAI---TRPSKPSFILQDATLYAFNLST 63 (212)
Q Consensus 12 ~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv---~rP~~P~~~v~~~~l~~~~~~~ 63 (212)
..++|++++..-+++-+++++++++.+|.. +.|+.|++. ++..=+++.+..
T Consensus 40 T~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~P 93 (300)
T KOG3927|consen 40 TGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFRP 93 (300)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeecC
Confidence 345666665544444455666666666664 579999999 554334455544
No 42
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=38.37 E-value=50 Score=20.23 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhheeeEEecC
Q 028208 24 VGGLIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~lv~rP 44 (212)
+.+..+++++.+..+|..|-|
T Consensus 12 i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 12 ITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHhhheeeeccCC
Confidence 444567788889999999987
No 43
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=37.95 E-value=13 Score=20.52 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=10.5
Q ss_pred HHHHHHHhheeeEEecCCC
Q 028208 28 IIVVLLIIFLFWAITRPSK 46 (212)
Q Consensus 28 ~ll~gi~~~i~~lv~rP~~ 46 (212)
++.+++.+-.+|..+||.+
T Consensus 10 ~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 10 AVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 3344444455555678853
No 44
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=37.71 E-value=5.4 Score=21.44 Aligned_cols=19 Identities=42% Similarity=0.934 Sum_probs=10.4
Q ss_pred HHHHHHHhheeeEEecCCC
Q 028208 28 IIVVLLIIFLFWAITRPSK 46 (212)
Q Consensus 28 ~ll~gi~~~i~~lv~rP~~ 46 (212)
++.+++++-++|..+||.+
T Consensus 5 ~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 5 VLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHhCHHh
Confidence 3444445555556678753
No 45
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=35.54 E-value=52 Score=23.53 Aligned_cols=24 Identities=8% Similarity=0.480 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHhheeeEEe
Q 028208 19 LILYAVGGLIIVVLLIIFLFWAIT 42 (212)
Q Consensus 19 ~~~~~~~~l~ll~gi~~~i~~lv~ 42 (212)
+++.++++++.++.++.+|.|+++
T Consensus 63 iili~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 63 IILISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred chHHHHHHHHHHHHHHhhheEEEE
Confidence 334344444444445555666643
No 46
>CHL00020 psbN photosystem II protein N
Probab=35.53 E-value=55 Score=19.76 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhheeeEEecC
Q 028208 24 VGGLIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~lv~rP 44 (212)
+++..+++++...-+|..|-|
T Consensus 9 i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 9 IFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHhhheeeeeccCC
Confidence 444567788888889999887
No 47
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=35.30 E-value=10 Score=22.52 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=5.4
Q ss_pred HHhheeeEEec
Q 028208 33 LIIFLFWAITR 43 (212)
Q Consensus 33 i~~~i~~lv~r 43 (212)
++++++|+++|
T Consensus 27 vl~~~l~~~~r 37 (40)
T PF08693_consen 27 VLGAFLFFWYR 37 (40)
T ss_pred HHHHHhheEEe
Confidence 34445555555
No 48
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.30 E-value=54 Score=24.87 Aligned_cols=16 Identities=0% Similarity=0.063 Sum_probs=9.8
Q ss_pred EEEceEEEEEEcCeEE
Q 028208 91 YYQKADVYASYRNQQI 106 (212)
Q Consensus 91 ~Y~~~~~~v~Y~g~~l 106 (212)
+|-..++.+.+.+...
T Consensus 63 ~ylk~~i~l~~~~~~~ 78 (142)
T PRK07718 63 NFIRIQFKIETDSKKA 78 (142)
T ss_pred CEEEEEEEEEECCHHH
Confidence 4556667777765543
No 49
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=33.85 E-value=37 Score=28.60 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=43.7
Q ss_pred HHHHHHHhheeeEEecCCCCEEEEEeEEEeEEeccCCC---------CCCceeeEE--------------EEEEEEEeCC
Q 028208 28 IIVVLLIIFLFWAITRPSKPSFILQDATLYAFNLSTGP---------SPPNALTTN--------------LQVTITTRNP 84 (212)
Q Consensus 28 ~ll~gi~~~i~~lv~rP~~P~~~v~~~~l~~~~~~~~~---------~~~~~l~~~--------------~~~~l~~~NP 84 (212)
++++++.++++|...-++.|-|.+..+.+++=+..+.. ++++.+..+ -+++++=.=|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~P 118 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFP 118 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeCC
Confidence 33444556677888888999999999999863322210 112222222 2345555669
Q ss_pred CCeEEEEEEceEEEEEEc
Q 028208 85 NDQIGIYYQKADVYASYR 102 (212)
Q Consensus 85 N~~~~i~Y~~~~~~v~Y~ 102 (212)
| .+.|.-.+-..-.++.
T Consensus 119 n-tv~I~v~Er~piA~w~ 135 (269)
T COG1589 119 N-TLEIEVVEREPIAYWQ 135 (269)
T ss_pred C-cEEEEEEEeeeEEEEe
Confidence 9 4888887655444444
No 50
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=33.17 E-value=40 Score=20.37 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhheeeEEecC
Q 028208 24 VGGLIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~lv~rP 44 (212)
+.+..+++++....+|..|-|
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCC
Confidence 444566777888889999976
No 51
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=32.79 E-value=28 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=6.2
Q ss_pred cccceehhhHHHHH
Q 028208 12 DRKKLVRLILYAVG 25 (212)
Q Consensus 12 ~r~~~~~~~~~~~~ 25 (212)
+|||--++|=++|.
T Consensus 8 KrRK~N~iLNiaI~ 21 (217)
T PF07423_consen 8 KRRKTNKILNIAIG 21 (217)
T ss_pred HhhhhhhhHHHHHH
Confidence 44444444444333
No 52
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=32.61 E-value=36 Score=19.46 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=15.3
Q ss_pred cccceehhhHHHHHHHHHHHHH
Q 028208 12 DRKKLVRLILYAVGGLIIVVLL 33 (212)
Q Consensus 12 ~r~~~~~~~~~~~~~l~ll~gi 33 (212)
++++.++.+|.++++..+++++
T Consensus 4 RKsK~~~tLCGa~Lgt~~~~~~ 25 (34)
T TIGR03726 4 RKSKKYRTLCGAALGTAVTASV 25 (34)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 5667788999988876554433
No 53
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=31.49 E-value=24 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=10.0
Q ss_pred HHHHHHHHhheeeEEecCCC
Q 028208 27 LIIVVLLIIFLFWAITRPSK 46 (212)
Q Consensus 27 l~ll~gi~~~i~~lv~rP~~ 46 (212)
+++++++.+.+++.+++|+.
T Consensus 16 l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 33333344444445678863
No 54
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.31 E-value=18 Score=22.16 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.9
Q ss_pred HhheeeEEecCCC
Q 028208 34 IIFLFWAITRPSK 46 (212)
Q Consensus 34 ~~~i~~lv~rP~~ 46 (212)
.+.++|.+++|+.
T Consensus 22 F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 22 FIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHcccc
Confidence 3333444678863
No 55
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=30.17 E-value=33 Score=26.80 Aligned_cols=14 Identities=29% Similarity=0.914 Sum_probs=9.5
Q ss_pred HHHHhheeeEEecC
Q 028208 31 VLLIIFLFWAITRP 44 (212)
Q Consensus 31 ~gi~~~i~~lv~rP 44 (212)
+++++.++|+.+||
T Consensus 15 ~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 15 LACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHhhhhccCC
Confidence 33333778888998
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.48 E-value=20 Score=26.82 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=8.4
Q ss_pred HHHHHhheeeEEec-CCCCEEEEEe
Q 028208 30 VVLLIIFLFWAITR-PSKPSFILQD 53 (212)
Q Consensus 30 l~gi~~~i~~lv~r-P~~P~~~v~~ 53 (212)
++|++++|+|++-| =|++...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34455666676643 2444444433
No 57
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=29.06 E-value=87 Score=25.02 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHhheeeEEecCCCC
Q 028208 18 RLILYAVGGLIIVVLLIIFLFWAITRPSKP 47 (212)
Q Consensus 18 ~~~~~~~~~l~ll~gi~~~i~~lv~rP~~P 47 (212)
+..+++++++ ++++++.+++.+++|..|
T Consensus 4 K~aF~~Lla~--~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 4 KWAFLILLAL--NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHH--HHHHHhheeeEEEccCCC
Confidence 4455554433 344456667778899866
No 58
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=28.83 E-value=64 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=14.5
Q ss_pred ehhhHHHHHHHHHHHHHHhheeeE
Q 028208 17 VRLILYAVGGLIIVVLLIIFLFWA 40 (212)
Q Consensus 17 ~~~~~~~~~~l~ll~gi~~~i~~l 40 (212)
.-+++++++..++.+|+.+.+++.
T Consensus 18 WeIfLItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666677776655543
No 59
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=27.15 E-value=42 Score=30.00 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCcccceehhhHHHHHHHHHHHHHHhheeeEEecC-CCCEE-EEEeEEE
Q 028208 9 SHDDRKKLVRLILYAVGGLIIVVLLIIFLFWAITRP-SKPSF-ILQDATL 56 (212)
Q Consensus 9 ~~~~r~~~~~~~~~~~~~l~ll~gi~~~i~~lv~rP-~~P~~-~v~~~~l 56 (212)
..+--.|...|+...|++++++.|++.+++. .-+| .+..+ .|+++-.
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~A-ttKpL~~v~v~~I~NVla 343 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLVIGFAIGFVFA-TTKPLTDVQVVSIQNVLA 343 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHhhhh-cCcccccceEEEeeeeee
Confidence 4454456667777777778889998888775 4566 55555 4555443
No 60
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=26.27 E-value=78 Score=23.81 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=8.7
Q ss_pred hheeeEEecCCCCEEEE
Q 028208 35 IFLFWAITRPSKPSFIL 51 (212)
Q Consensus 35 ~~i~~lv~rP~~P~~~v 51 (212)
+.+.|++.+-..|.+.+
T Consensus 33 a~~s~~~~~~~~P~iV~ 49 (128)
T PRK13717 33 AAVSYGIVRLNAPVTAA 49 (128)
T ss_pred HHHHHHHhhcCCCeEEE
Confidence 44555555555555543
No 61
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=26.08 E-value=2.7e+02 Score=22.01 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=7.5
Q ss_pred ecCCCCEEEEEeE
Q 028208 42 TRPSKPSFILQDA 54 (212)
Q Consensus 42 ~rP~~P~~~v~~~ 54 (212)
+.|..|..++...
T Consensus 32 ~~~~~~~~~i~v~ 44 (175)
T PF04573_consen 32 FHPPSPSVSISVS 44 (175)
T ss_pred ccCCCCceEEEEE
Confidence 6666666655443
No 62
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.96 E-value=22 Score=30.72 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=11.0
Q ss_pred HHHHHHHHhheeeEEec
Q 028208 27 LIIVVLLIIFLFWAITR 43 (212)
Q Consensus 27 l~ll~gi~~~i~~lv~r 43 (212)
+++++.++.+|+||++|
T Consensus 264 aIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444456777888876
No 63
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=25.88 E-value=82 Score=18.60 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=10.5
Q ss_pred HHHHhheeeEEecCC
Q 028208 31 VLLIIFLFWAITRPS 45 (212)
Q Consensus 31 ~gi~~~i~~lv~rP~ 45 (212)
+-++..++|++++++
T Consensus 32 ~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 32 FPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHhheEEEeCC
Confidence 455667889888754
No 64
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=25.19 E-value=3.8e+02 Score=21.89 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.8
Q ss_pred CceeeEEEEEEEEEeCCCCeEEEEEEc--eEEEEEEcCeEEec
Q 028208 68 PNALTTNLQVTITTRNPNDQIGIYYQK--ADVYASYRNQQISL 108 (212)
Q Consensus 68 ~~~l~~~~~~~l~~~NPN~~~~i~Y~~--~~~~v~Y~g~~lg~ 108 (212)
...+.+.-+.++.++-|| ++.+.+.+ .+..++|.|..+..
T Consensus 34 gqklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred CceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEEE
Confidence 367788889999999999 69999955 37889999988763
No 65
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=24 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=8.1
Q ss_pred HhheeeEEecCCC
Q 028208 34 IIFLFWAITRPSK 46 (212)
Q Consensus 34 ~~~i~~lv~rP~~ 46 (212)
...++|.+|||+.
T Consensus 22 fiavi~~ayr~~~ 34 (60)
T COG4736 22 FIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHhcccc
Confidence 3444566788864
No 66
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.48 E-value=29 Score=24.69 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=6.6
Q ss_pred HHHHHhheeeE-Eec
Q 028208 30 VVLLIIFLFWA-ITR 43 (212)
Q Consensus 30 l~gi~~~i~~l-v~r 43 (212)
+.++++++.|+ ++|
T Consensus 79 v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 79 VGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHhheeEEe
Confidence 33444445555 444
No 67
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=24.16 E-value=69 Score=23.94 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=4.0
Q ss_pred EEEEEEcC
Q 028208 96 DVYASYRN 103 (212)
Q Consensus 96 ~~~v~Y~g 103 (212)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 34555544
No 68
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.05 E-value=34 Score=19.46 Aligned_cols=12 Identities=25% Similarity=0.905 Sum_probs=5.9
Q ss_pred HHHHHHhheeeE
Q 028208 29 IVVLLIIFLFWA 40 (212)
Q Consensus 29 ll~gi~~~i~~l 40 (212)
.++++.++++|+
T Consensus 13 ~iLt~~ILvFWf 24 (34)
T PF08113_consen 13 MILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334445555554
No 69
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=23.14 E-value=52 Score=30.74 Aligned_cols=27 Identities=15% Similarity=0.296 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHhheeeEEecC
Q 028208 18 RLILYAVGGLIIVVLLIIFLFWAITRP 44 (212)
Q Consensus 18 ~~~~~~~~~l~ll~gi~~~i~~lv~rP 44 (212)
+.++..+++++|+++++.|+.-++|++
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 555555555556665666665556654
No 70
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=22.36 E-value=32 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=8.1
Q ss_pred hheeeEEecCC--CCEEE
Q 028208 35 IFLFWAITRPS--KPSFI 50 (212)
Q Consensus 35 ~~i~~lv~rP~--~P~~~ 50 (212)
++|+||++--+ .|.|.
T Consensus 10 ~li~~Lv~~~r~~~~vf~ 27 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFE 27 (108)
T ss_pred HHHHHHHHccccCceEEE
Confidence 36667754333 35554
No 71
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=22.18 E-value=86 Score=25.82 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=6.1
Q ss_pred EecCCCCEE
Q 028208 41 ITRPSKPSF 49 (212)
Q Consensus 41 v~rP~~P~~ 49 (212)
++|||....
T Consensus 182 ~~K~K~~~~ 190 (218)
T PF14283_consen 182 FYKPKQEEK 190 (218)
T ss_pred Eeccccccc
Confidence 778876544
No 72
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.90 E-value=1.1e+02 Score=22.58 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=18.4
Q ss_pred cccceehhhHHHHHHHHHHHHHHhheee
Q 028208 12 DRKKLVRLILYAVGGLIIVVLLIIFLFW 39 (212)
Q Consensus 12 ~r~~~~~~~~~~~~~l~ll~gi~~~i~~ 39 (212)
+|-|....++.++..++++++++..+++
T Consensus 25 ~r~riinliiG~vT~l~VLvtii~afvf 52 (118)
T PF10856_consen 25 ARDRIINLIIGAVTSLFVLVTIISAFVF 52 (118)
T ss_pred cccEEEEeehHHHHHHHHHHHHhheEEe
Confidence 5667778888877777766665544433
No 73
>PF14828 Amnionless: Amnionless
Probab=21.69 E-value=55 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=13.0
Q ss_pred HHHHHHHHhheeeEEecCCCCEE
Q 028208 27 LIIVVLLIIFLFWAITRPSKPSF 49 (212)
Q Consensus 27 l~ll~gi~~~i~~lv~rP~~P~~ 49 (212)
.++++++++.++|+.+.|+.|.+
T Consensus 347 ~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 347 CLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHHHHhheEEeccccccc
Confidence 34444455555566665776655
No 74
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.20 E-value=28 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhheeeEEec
Q 028208 24 VGGLIIVVLLIIFLFWAITR 43 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~lv~r 43 (212)
+.++++.+.|+.+++|.++|
T Consensus 6 fvi~~v~v~Ivclliya~Yr 25 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777765
No 75
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.04 E-value=66 Score=25.12 Aligned_cols=28 Identities=7% Similarity=-0.065 Sum_probs=18.7
Q ss_pred EEEEEeCCCCeEEEEEEceEEEEEEcCeEEe
Q 028208 77 VTITTRNPNDQIGIYYQKADVYASYRNQQIS 107 (212)
Q Consensus 77 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 107 (212)
+++++..++ +-+|-...+.+.+++....
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~~~d~~~~ 103 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLMVRGSDDE 103 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEEECCHHHH
Confidence 556665554 4578888888888776543
No 76
>PHA03093 EEV glycoprotein; Provisional
Probab=20.87 E-value=53 Score=26.25 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=11.3
Q ss_pred CCCCcccceehhhHHHHH
Q 028208 8 HSHDDRKKLVRLILYAVG 25 (212)
Q Consensus 8 ~~~~~r~~~~~~~~~~~~ 25 (212)
+|+.+++||..+|+-+.+
T Consensus 26 k~~~kk~r~i~i~~Risi 43 (185)
T PHA03093 26 KKNKKKVKCIGICIRISI 43 (185)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 344477777777766544
No 77
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.57 E-value=4.2e+02 Score=20.70 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=17.7
Q ss_pred EEEEEEeCCCCeEEEEEEceEEEEEEcCeEEe
Q 028208 76 QVTITTRNPNDQIGIYYQKADVYASYRNQQIS 107 (212)
Q Consensus 76 ~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 107 (212)
.+.+.+...+..+.+.|..+--.++-+|+.+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVV 110 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQGVV 110 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCeEE
Confidence 34444455555566666666555555555444
No 78
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=20.56 E-value=1.1e+02 Score=23.09 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=7.5
Q ss_pred hheeeEEecCCC
Q 028208 35 IFLFWAITRPSK 46 (212)
Q Consensus 35 ~~i~~lv~rP~~ 46 (212)
++.+|+.+||+.
T Consensus 119 ~i~~~i~~kpR~ 130 (139)
T PF04881_consen 119 CIHLLIKIKPRN 130 (139)
T ss_pred HHhhheeecccc
Confidence 445566788864
No 79
>PHA03049 IMV membrane protein; Provisional
Probab=20.15 E-value=33 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHHHhheeeEEec
Q 028208 26 GLIIVVLLIIFLFWAITR 43 (212)
Q Consensus 26 ~l~ll~gi~~~i~~lv~r 43 (212)
.+++.++++++|+|-+++
T Consensus 7 l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345556677888888775
Done!