Query 028208
Match_columns 212
No_of_seqs 111 out of 835
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 1.8E-06 6.3E-11 67.4 10.4 102 45-162 43-146 (174)
2 1xo8_A AT1G01470; structural g 98.1 1.2E-06 4.3E-11 66.9 3.5 103 45-163 20-124 (151)
3 3but_A Uncharacterized protein 98.0 0.00013 4.6E-09 54.5 11.6 85 72-162 17-103 (136)
4 2knc_B Integrin beta-3; transm 63.4 5.5 0.00019 26.4 2.8 18 23-40 16-33 (79)
5 2k9j_B Integrin beta-3; transm 52.8 8 0.00027 22.5 1.9 16 24-39 16-31 (43)
6 3kdp_B Sodium/potassium-transp 29.7 14 0.00049 30.5 0.6 49 13-62 12-63 (286)
7 1nrp_R Receptor based peptide 20.2 20 0.0007 17.8 -0.1 12 80-91 7-18 (26)
8 1nro_R Receptor based peptide 20.0 23 0.0008 17.7 0.1 11 80-90 7-17 (27)
9 3s8f_C Cytochrome C oxidase po 18.5 33 0.0011 18.8 0.5 14 27-40 11-24 (34)
10 3ixz_B Potassium-transporting 18.4 38 0.0013 28.0 1.1 41 10-50 31-74 (290)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.42 E-value=1.8e-06 Score=67.36 Aligned_cols=102 Identities=11% Similarity=0.088 Sum_probs=79.7
Q ss_pred CCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCC-ceeecCCCeE
Q 028208 45 SKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLP-ATYQGHKDVI 123 (212)
Q Consensus 45 ~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~F~q~~r~~~ 123 (212)
+.|++++.++.+..++... .++.+.++++|||. ..+.+..++..+.-.|..++ ++.++ ++..++++++
T Consensus 43 ~~PeV~v~~v~~~~~~l~~---------~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~la-sG~s~~~~tIpa~g~~ 111 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG---------VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIA-SGTIPDPGSLVGSGTT 111 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS---------EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEE-EEEESCCCBCCSSEEE
T ss_pred CCCEEEEEEeEEeccccce---------EEEEEEEEEECCCC-CCccccceEEEEEECCEEEE-EEecCCCceECCCCcE
Confidence 6799999999998777643 78999999999995 89999999999999999999 57766 6899999999
Q ss_pred EEEEEEEeeccccCHHHHHHHhcccc-CCeEEEEEEEEEE
Q 028208 124 VWSPFLCGNSVPVSPFVAEALGQDLN-AGMVMVNIKVDGR 162 (212)
Q Consensus 124 ~v~~~l~~~~v~l~~~~~~~l~~d~~-~g~v~l~v~v~~~ 162 (212)
.+.+.++..- ....++.+++. .+.++.++++...
T Consensus 112 ~v~Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 112 VLDVPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEEEEEEESH-----HHHHHTCCCCCSSEEECEEEEEEEE
T ss_pred EEEEEEEEEH-----HHHHHHHHhcCCCCccceEEEEEEE
Confidence 9998776442 22224445553 3467777766443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.14 E-value=1.2e-06 Score=66.88 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCEEEEEeEEEeEEeccCCCCCCceeeEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccCCC-ceeecCCCeE
Q 028208 45 SKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLP-ATYQGHKDVI 123 (212)
Q Consensus 45 ~~P~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~F~q~~r~~~ 123 (212)
+.|++++.++++..++.. ..++.+.++++|||. ..+.+..++..+.-.|..++ ++..+ ++..++++++
T Consensus 20 ~~P~v~v~~v~~~~~~~~---------~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~la-sG~~~~~~~ipa~g~~ 88 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD---------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIG-KGKIPDPGSLKAKDMT 88 (151)
T ss_dssp CSCCCBCSEEEECCCTTT---------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEE-EEEEEECCCCSSSSEE
T ss_pred CCCEEEEEEeEEeccCcc---------eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEE-EEecCCCcEECCCCcE
Confidence 569999999988755543 468899999999995 89999999999999999999 57766 6889999999
Q ss_pred EEEEEEEeeccccCHHHHHHHhccc-cCCeEEEEEEEEEEE
Q 028208 124 VWSPFLCGNSVPVSPFVAEALGQDL-NAGMVMVNIKVDGRI 163 (212)
Q Consensus 124 ~v~~~l~~~~v~l~~~~~~~l~~d~-~~g~v~l~v~v~~~v 163 (212)
.+.+.++... .+ ..++..+. ..+.++.++++...+
T Consensus 89 ~v~vpv~v~~----~~-l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 89 ALDIPVVVPY----SI-LFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp EEEECCCEEH----HH-HHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEEEEEEEH----HH-HHHHHHhcccCCcccEEEEEEEEE
Confidence 9888665442 11 22233332 346777777665543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.96 E-value=0.00013 Score=54.52 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=65.6
Q ss_pred eEEEEEEEEEeCCCCeEEEEEEceEEEEEEcCeEEecccC-CCceeecCCCeEEEEEEEEeeccccCHHHHHHHhccccC
Q 028208 72 TTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATL-LPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNA 150 (212)
Q Consensus 72 ~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~-vp~F~q~~r~~~~v~~~l~~~~v~l~~~~~~~l~~d~~~ 150 (212)
...+.+.|+++||| .+.+.++.++..++..|..+| ++. ...+..++.+.+.+.+.+..+.-.+.....+-++ +
T Consensus 17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~lng~~la-~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~----n 90 (136)
T 3but_A 17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMNGVKVA-DGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA----N 90 (136)
T ss_dssp EEEEEEEEEEECCS-SSCEEEEEEEEEEEETTEEEE-EEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH----T
T ss_pred EEEEEEEEEEeCCC-CcceeeeceEEEEEECCEEEE-eeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh----c
Confidence 57789999999999 589999999999999999999 465 7789999999998999888877666655444444 3
Q ss_pred C-eEEEEEEEEEE
Q 028208 151 G-MVMVNIKVDGR 162 (212)
Q Consensus 151 g-~v~l~v~v~~~ 162 (212)
| +-.++++.+..
T Consensus 91 ge~s~l~i~~~~~ 103 (136)
T 3but_A 91 GEKTKIRVAIKPT 103 (136)
T ss_dssp TSEEEEEEEEEEE
T ss_pred CCceEEEEEEEEE
Confidence 3 34444444443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.37 E-value=5.5 Score=26.39 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhheeeE
Q 028208 23 AVGGLIIVVLLIIFLFWA 40 (212)
Q Consensus 23 ~~~~l~ll~gi~~~i~~l 40 (212)
.+++.++++|++++++|-
T Consensus 16 gvi~gilliGllllliwk 33 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556777777777664
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=52.79 E-value=8 Score=22.46 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhheee
Q 028208 24 VGGLIIVVLLIIFLFW 39 (212)
Q Consensus 24 ~~~l~ll~gi~~~i~~ 39 (212)
+++.++++|++++++|
T Consensus 16 vi~~ivliGl~lLliw 31 (43)
T 2k9j_B 16 VMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445677777777666
No 6
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=29.66 E-value=14 Score=30.46 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=28.2
Q ss_pred ccceehhhHHHHHHHHHHHHHHhheeeEE---ecCCCCEEEEEeEEEeEEecc
Q 028208 13 RKKLVRLILYAVGGLIIVVLLIIFLFWAI---TRPSKPSFILQDATLYAFNLS 62 (212)
Q Consensus 13 r~~~~~~~~~~~~~l~ll~gi~~~i~~lv---~rP~~P~~~v~~~~l~~~~~~ 62 (212)
.++|.+++..=++.-++|+|++++.+|.. +.|+.|++. +...-+++.+.
T Consensus 12 ~~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~~~PGL~~~ 63 (286)
T 3kdp_B 12 GGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRVAPPGLTQI 63 (286)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTTCSCCCCBS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCCCCCcceec
Confidence 34555555544444455565655555554 789999998 55533444433
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=20.18 E-value=20 Score=17.77 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.2
Q ss_pred EEeCCCCeEEEE
Q 028208 80 TTRNPNDQIGIY 91 (212)
Q Consensus 80 ~~~NPN~~~~i~ 91 (212)
..+|||++..-.
T Consensus 7 llrnpndkyepf 18 (26)
T 1nrp_R 7 LLRNPNDKYEPF 18 (26)
T ss_pred hhcCCCcccCcc
Confidence 468999875433
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=20.02 E-value=23 Score=17.70 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=7.6
Q ss_pred EEeCCCCeEEE
Q 028208 80 TTRNPNDQIGI 90 (212)
Q Consensus 80 ~~~NPN~~~~i 90 (212)
..+|||++..-
T Consensus 7 llrnpndkyep 17 (27)
T 1nro_R 7 LLRNPNDKYEP 17 (27)
T ss_pred cccCCCcccCc
Confidence 46899987543
No 9
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=18.46 E-value=33 Score=18.85 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=7.2
Q ss_pred HHHHHHHHhheeeE
Q 028208 27 LIIVVLLIIFLFWA 40 (212)
Q Consensus 27 l~ll~gi~~~i~~l 40 (212)
.++++|++.+++|+
T Consensus 11 ~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 11 VILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=18.42 E-value=38 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCcccceehhhHHHHHHHHHHHHHHhheeeE---EecCCCCEEE
Q 028208 10 HDDRKKLVRLILYAVGGLIIVVLLIIFLFWA---ITRPSKPSFI 50 (212)
Q Consensus 10 ~~~r~~~~~~~~~~~~~l~ll~gi~~~i~~l---v~rP~~P~~~ 50 (212)
+|-.++|.+++..=++.-++|+|++++.+|. .+.|+.|++.
T Consensus 31 GRT~~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyq 74 (290)
T 3ixz_B 31 GRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQ 74 (290)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Done!